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Reference Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin) Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `391e4713`, 2026-09-09, **vault HEAD unchanged** at the 2026-08-31T18:09Z fetch level for the 9th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster, **0 new vault commits** in the 2026-09-08T18:07Z → 2026-09-09T18:11Z 24-hour window, **9 calendar days of vault silence** since the 2026-08-31 cluster (Yan + Stewart + Nguyen + Aiello + Miao all `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 28 → **29-day carry-forward** (26 → **27 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 23 → **24-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + **2026-09-09** fetches), `deepread_40240593/` 16 → **17-day carry-forward** (mtime unchanged across **16 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `7e2072cef52a842ccde9daab27ad82699c9e127c`, 2026-09-09, **2 new automated wiki commits in the 2026-09-08T18:07Z → 2026-09-09T18:11Z 24-hour window: `7e2072c` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-09 — the **twenty-sixth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15) committed `sources/{nocodb,ragflow,seafile,wikijs}.md` re-touched by the sources-sync, then `f7450e9` chore: daily update 2026-09-09 (per `git show --stat f7450e9` the commit touched 16 files including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` + one more file); the very next synthesis edits from the HN-1 2026-09-09 (next pull after the 2026-09-08 18:00 UTC pull — the 2026-09-09T18:11Z fetch is the git-repo-1 slot in the daily update cycle) + web-search-1 2026-09-09 (skipped) + this git-repo-1 2026-09-09T18:11Z run re-touched files leaving the dirty count at **10 per the manifest `changedFiles` list** — `M .last-update.json` + `M open-questions.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` — **same shape as the 2026-09-08T18:07Z fetch (10-dirty-file baseline)** because the `7e2072c` sources-sync on 2026-09-09 re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) that the `f7450e9` daily update had cleared via commit, plus the CLI metadata cycle re-touched `open-questions.md` + `sources/index.md` (replacing `quickstart.md` + `index.md` from the 2026-09-08 metadata cycle) + `.last-update.json` + `sources/hackernews.md` + `sources/web-search.md` + `themes.md` (4 metadata-cycle files that carried over from the 2026-09-08 cycle); the 10-dirty-file list does not include `quickstart.md` + `index.md` (the `f7450e9` daily update on 2026-09-09 re-touched them and cleared them via commit) or `sources/git-repo.md` + `sources/README.md` + `sources/literature.md` + `themes/05-robin-research.md` + `themes/index.md` (the `f7450e9` daily update on 2026-09-09 re-touched them and cleared them via commit) or `commitments.md` + `sources/openwiki-version-drift.md` (not re-touched by either the daily update or the CLI metadata cycle at this fetch)**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
sources
git-repo
vault
wiki
manifest
2026-09-09
2026-09-08
2026-09-07
2026-09-06
2026-09-05
2026-09-04
2026-09-03
2026-09-02
2026-09-01
2026-08-31
vault-silent-9d
twenty-sixth-sources-sync
review-templates-celvivo-commercial-confirmed-one-off
deepread-40240593-seventeen-silent-fetches
2026-09-09T18:11:00Z

Git repo — evidence index

This page is the compact source-evidence index for the local git-repo connector, which ingests Robin's Obsidian vault (/home/ldw/workspace) and the local OpenWiki wiki (/home/ldw/.openwiki/wiki). Each ingestion run writes a JSON manifest under ~/.openwiki/connectors/git-repo/raw/.

Source config

  • Connector config path: ~/.openwiki/connectors/git-repo/config.json
  • Two configured local repos:
    • obsidian-vault at /home/ldw/workspace (branch: main, HEAD 391e4713, 2026-08-31 — 35 commits since 2026-08-03 fetch)
    • openwiki-wiki at /home/ldw/.openwiki/wiki (branch: main, HEAD 7e2072c, 2026-09-09)
  • Authentication: local path only — no remote, no credentials

Latest manifest

  • ~/.openwiki/connectors/git-repo/raw/2026-09-09T18-11-48-700Z/manifest.json (generated 2026-09-09T18:11:48Z)
  • Vault HEAD: 391e47131679ce9edf0f525236e78ebb13e0d232 (unchanged since 2026-08-31T13:42 +0800)
  • Wiki HEAD: 7e2072cef52a842ccde9daab27ad82699c9e127c (bumped from 556d937 at 2026-09-09)
  • 0 new vault commits in the 24-hour window (vault silent for the 9th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster)
  • 2 new automated wiki commits in the 24-hour window (7e2072c sources-sync 2026-09-09 — the twenty-sixth consecutive sources-sync + f7450e9 daily update 2026-09-09)
  • 10 uncommitted wiki files in working tree per the manifest changedFiles list (same shape as the 2026-09-08T18:07Z fetch — the f7450e9 daily update cleared quickstart.md + index.md + sources/{git-repo,README,literature}.md + themes/05-robin-research.md + themes/index.md via commit, but the 7e2072c sources-sync on 2026-09-09 re-touched the 4 source-sync files sources/{nocodb,ragflow,seafile,wikijs}.md that the daily update had cleared — leaving those 4 + the 4 CLI metadata-cycle files .last-update.json + open-questions.md + sources/hackernews.md + sources/web-search.md + sources/index.md + themes.md still dirty after the synthesis edits = 10-dirty-file baseline, same shape as 2026-09-08T18:07Z fetch — open-questions.md + sources/index.md replaced quickstart.md + index.md from the 2026-09-08 metadata cycle, all other entries carry forward unchanged)

Carry-forward untracked directories

Directory / file Carry-forward Fetches silent Status
Review/zhou2023_computer_vision_microfluidics.md 29-day 27 stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch)
celvivo_commercial/ 24-day 24 stale carry-forward note (confirmed one-off alongside Review/ at 2026-08-28 fetch)
templates/ 24-day 24 stale carry-forward note (confirmed one-off alongside Review/ at 2026-08-28 fetch)
deepread_40240593/ 17-day 16 working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 16 consecutive silent fetches since creation)

Robin 8-07 added — untracked regional agent files (context only)

The 8 untracked regional agent files Robin added on 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") remain in the vault working tree as uncommitted artifacts, with no mtime change observed since the 2026-08-07 baseline:

  • 02-Clients/Agents/全国经销商地图-2026-0807.md
  • 02-Clients/Agents/华东-2026-0807.md
  • 02-Clients/Agents/华北-2026-0807.md
  • 02-Clients/Agents/华南-2026-0807.md
  • 02-Clients/Agents/山东-2026-0807.md
  • 02-Clients/Agents/湖北-2026-0807.md
  • 02-Clients/Agents/西北-2026-0807.md
  • 02-Clients/Agents/西南-2026-0807.md

These files are documented in /sources/distributors-china-2026.md (with privacy rules per /sources/agents.md) — no fresh synthesis update needed at this fetch.

Recent commits — vault (last 5)

The most recent vault commits remain the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR burst (no new commits in the 24-hour window):

  1. 391e4713 2026-08-31 — deep-read: Yan 2024 Cell Reports TMEM106B SARS-CoV-2 ACE2-independent brain organoids (CelVivo)
  2. 4fca0123 2026-08-31 — deep-read: Miao 2025 Cell vascularized lung/gut organoids (CelVivo ClinoReactor)
  3. fad7e21e 2026-08-31 — deep-read: Nguyen 2024 npj Viruses JEV G4 2022 Australia brain organoids (CelVivo)
  4. 030f31ed 2026-08-31 — deep-read: Aiello 2025 EMBO reports reproducible brain organoids (CelVivo ClinoReactor)
  5. eb24ab72 2026-08-31 — deep-read: Stewart 2023 Front Microbiol BA.5/XBB neurotropic brain organoids (CelVivo)

Recent commits — wiki (last 5)

  1. f7450e9 2026-09-09 — chore: daily update 2026-09-09 (16 files modified per git show --stat f7450e9)
  2. 7e2072c 2026-09-09 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-09, twenty-sixth consecutive sources-sync)
  3. 57be545 2026-09-08 — chore: daily update 2026-09-08 (10 files modified per git show --stat 57be545)
  4. 556d937 2026-09-08 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-08, twenty-fifth consecutive sources-sync)
  5. 3e04ce7 2026-09-07 — chore: daily update 2026-09-07 (16 files modified per git show --stat 3e04ce7)

Synthesis-policy — this run

  • Vault delta: empty (no new commits, no new mtime changes; the 8 Robin-8-07 regional agent files carry forward unchanged).
  • Wiki delta: automated maintenance only (CLI metadata cycle + sources-sync + daily update).
  • Synthesis-layer impact: none. The themes / commitments / open-questions / personal-logistics pages are independent of the wiki-side automated maintenance commits.
  • Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-09T18:11Z)" paragraph on /quickstart.md for the full delta list.

Previous run

  • 2026-09-08T18:07Z — vault HEAD unchanged at 391e4713, 2 new wiki commits (556d937 + 57be545 — the twenty-fifth consecutive sources-sync), 10-dirty-file baseline (up from 4), the 4 carry-forward untracked directories bumped to 28/23/23/16-day carry-forward. See /themes/05-robin-research.md + /quickstart.md for the full synthesis of that run.
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