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chore: daily update 2026-08-18

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@@ -33,8 +33,14 @@ tags: [quickstart, navigation, openwiki, status]
## Current status
- **Wiki state:** initialized — Hacker News, the local Obsidian vault, and Tavily web search are active and feeding `/sources/hackernews.md`, `/sources/git-repo.md`, `/sources/web-search.md`, and `/themes.md`. All 5 synthesis themes (`/themes/01-organoid-equipment.md`, `/themes/02-bioprinting.md`, `/themes/03-ai-agents.md`, `/themes/04-local-llm.md`, `/themes/05-robin-research.md`) are now generated.
- **Connectors:** Hacker News, git-repo, and web search active. The 2026-08-08, 2026-08-10, 2026-08-12, and 2026-08-15 web-search update attempts were skipped because the connector is not enabled and `TAVILY_API_KEY` is empty; the latest successful Tavily pull remains 2026-08-03 18:08 UTC. Gmail, Slack, Notion, and X are not yet configured — see "Adding sources" below.
- **Wiki state:** initialized — Hacker News, the local Obsidian vault, and Tavily web search are active and feeding `/sources/hackernews.md`, `/sources/git-repo.md`, `/sources/web-search.md`, and `/themes.md`. All 5 synthesis themes (`/themes/01-organoid-equipment.md`, `/themes/02-bioprinting.md`, `/themes/03-ai-agents.md`, `/themes/04-local-llm.md`, `/themes/05-robin-research.md`) are now generated; the 2026-08-17 daily update also created `/sources/openwiki-version-drift.md` (auto-generated OpenWiki version-drift monitor).
- **Connectors:** Hacker News, git-repo, and web search active. The 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, and 2026-08-17 web-search update attempts were skipped because the connector is not enabled and `TAVILY_API_KEY` is empty; the latest successful Tavily pull remains 2026-08-03 18:08 UTC. Gmail, Slack, Notion, and X are not yet configured — see "Adding sources" below.
**Latest update — git-repo-1 (2026-08-17T18:09Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-08-17T18-09-32-895Z/manifest.json`. **Vault HEAD** bumped from `297f106d2b137af3480261052ff080cbc48d5b48` (2026-08-15) to **`a4fa5a323d6dcabeb9eccad49e636ee6ba5f87a6`** (2026-08-16); **7 new vault commits** landed in the 2026-08-15T18:07Z → 2026-08-17T18:09Z 48-hour window, forming **two new paper LDR cycles in the same window** — **the first time since the 2026-07-28 / 2026-07-29 Parate / Lee / Hodge cluster that two new paper deep-reads landed on `main` in the same 48-hour window**: (a) **Quintard 2024 Nat Commun** (DOI 10.1038/s41467-024-45710-4, Wiki.js IDs 1719/1720/1722, NocoDB Id 3297) — microfluidic platform integrating functional vascularized organoids-on-chip — **4-commit LDR cycle** (`0fc8db24` adds file 189 lines → `290e9635` -v2 修图床/双 H1/落款 → `24c713de` -v3 Wiki.js 自带图床 6 张图 → `4073abf4` -v4 转发语标题/落款加粗/删 3Brain per the SOP "硬门槛合规修正" cleanup rule); 10 通道并行微流控芯片 + U 型捕获位 + hiPSC-BVO 30 天功能性灌注培养 + 跨类器官验证 [间充质球体 / BVO / 胰岛球体 / 肺类器官]; "与我们的产品" table lists Mimetas OrganoPlate ⭐⭐⭐⭐ [direct Phaseguide-based vascularized / kidney / intestine organ-on-chip competitor] + CelVivo ClinoStar ⭐⭐⭐ [upstream workflow: BVO day 0-15 needs rotating-wall suspension culture, ClinoStar is the canonical hardware for this stage; the paper's day 15 → chip-on-board handoff is the canonical CelVivo → organ-on-chip workflow] + Emulate Organ-Chip ⭐⭐⭐; (b) **Guo 2026 Front Cell Dev Biol** (DOI 10.3389/fcell.2026.1721946, Wiki.js ID 1724, NocoDB Id 3298) — organoid IRB / ethics systematic review — **3-commit LDR cycle** (`2e6f5989` adds file 170 lines → `00f824f2` -v2 修图床 (加 2 张 Wiki.js 自带图) → `a4fa5a32` -v3 补 Fig 1); 嘉兴市第一医院 + 嘉兴大学医学院视角; 类器官研究 IRB / 伦理审查 7 大强制要点系统综述 [样本来源/知情同意/数据隐私/共培养主体性/3R 动物福利/跨境监管/长期保存与终止使用] + 中国《人类遗传资源管理条例》+ 国际 ISSCR/GDPR/HIPAA 多国对照表; "与我们的产品" table lists CelVivo ClinoStar ⭐⭐⭐⭐ [临床转化类器官的伦理合规 — 7 大要点直接适用 ClinoStar 客户 IRB 申请; **Robin 推广 ClinoStar 给三甲医院时, 可附带本框架作为增值**] + Mimetas OrganoPlate ⭐⭐⭐⭐ [类器官 + 免疫细胞共培养伦理审查依据] + Emulate Organ-Chip ⭐⭐⭐. **The Quintard + Guo cluster brings net-new external evidence** to the vault — both papers are added to the `Organoid/` subfolder (count 659 → 661) + 30-day research output + the by-vendor table on `/themes/05-robin-research.md`. **2 new untracked directories** appeared in the working tree this fetch: (i) **`celvivo_commercial/1331651_20260630_131201.pdf`** (the 6-30 quote PDF migrated into a new folder, companion to the existing `05-Documents/Products/Celvivo/Industrial-Customers/` commercial-docs subtree — the new folder name signals Robin may be consolidating "Celvivo commercial" documents into a separate vault subtree); (ii) **`templates/类器官IRB申请清单.md`** (180 lines, **untracked**, Robin 8-16 实战沉淀, derived from the Guo 2026 ethics deep-read — **first customer-facing template produced from a single deep-read** — 7 mandatory points checklist + 5 customer Q&A + China vs International flow table + 10 attachments + 7 citations; Robin's canonical "Robin 培训客户 IRB 申请" core material). The carry-forward untracked file `Review/zhou2023_computer_vision_microfluidics.md` from the 2026-08-13 fetch remains untracked at the 2026-08-17 fetch (now joined by 2 new untracked working-tree directories). **Wiki HEAD** bumped from `2507925e27b83b4f9d2e6f3b9c939d081a90f9f2` (2026-08-15) to **`be4928553364a654b888807a44438b738072c2ce`** (2026-08-17); **4 new wiki-side commits** in the same 48-hour window: `151d22b` chore: daily update 2026-08-16 (committed `sources/index.md` from the 2026-08-15 dirty set) + `997b648` sources-sync 2026-08-16 + `5c70881` chore: daily update 2026-08-17 (**created new file `sources/openwiki-version-drift.md`** — auto-generated OpenWiki version-drift monitor; reports v0.3.1 local → v0.3.3 npm latest as of 2026-08-15T20:00:03Z) + `be49285` sources-sync 2026-08-17. **9 uncommitted wiki files** in working tree (down from 10 at the 2026-08-15 fetch — `sources/index.md` got committed in `151d22b`); the 9 dirty files are `.last-update.json` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `soLine truncated
**Latest update — web-search-1 attempted 2026-08-17 skipped.** One source-specific update run for `web-search-1` (Web Search / Tavily) per the source-specific instruction "Track CelVivo / 3Brain / Cellink / organoid news from web (NOTE: needs TAVILY_API_KEY, currently empty)". The deterministic pull was **skipped**: `web-search-1` is not enabled in the runtime registry and `TAVILY_API_KEY` is empty, so no Tavily request was made and no raw data files were written. The nightly searxng-fallback slot `~/.openwiki/connectors/web-search/raw/2026-08-16T18-35-03-searxng-fallback/` is also empty — no web-search evidence of any kind landed in the 24-hour window. This is the **fifth consecutive skip** on the same code path (after 2026-08-08 + 2026-08-10 + 2026-08-12 + 2026-08-15); the latest successful Tavily pull remains 2026-08-03 18:08 UTC. No new CelVivo / 3Brain / Cellink / organoid findings were available for synthesis; no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md` from this source attempt. Discord between on-disk `~/.openwiki/connectors/web-search/config.json` (which shows `enabled: true` + 6 Chinese queries) and the runtime registry (still reports the connector as disabled) is the same operational issue noted on the 2026-08-08 / 2026-08-10 / 2026-08-12 / 2026-08-15 runs — recorded for traceability only, not a wiki-synthesis concern. Wiki edits this run: (a) `/sources/web-search.md` — added a "2026-08-17 attempted update — skipped" section ahead of the 2026-08-15 entry, following the established 5-field structure (Status / Authentication / Coverage / Synthesis / Operational note); updated the header line to mention the fifth skip; refreshed the 2026-08-15 entry's "Operational note" to mention the 2026-08-17 follow-up; added `2026-08-17` to the `tags` list; (b) `/sources/README.md` — refreshed Active connectors table + Connector roll table to reflect the 5-entry skip streak; (c) `/quickstart.md` — added this "Latest update — web-search-1 attempted 2026-08-17 skipped" paragraph; updated the Web Search connector row in "Current status" and "Adding sources" to reflect the 5-entry skip streak; updated the Backlog web-search entry likewise. **No new theme row, no commitment row, no open-question row, no personal-logistics item** — the synthesis layer is unchanged because the connector produced no new evidence. Prior run was **hackernews-1 update (2026-08-17T18:00Z)** — see next paragraph.
**Latest update — hackernews-1 (2026-08-17T18:00Z).** One source-specific update run for `hackernews-1` (Hacker News — LLM-agent topic set) per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=hackernews` and wrote raw data at `~/.openwiki/connectors/hackernews/raw/2026-08-17T18-00-01-808Z/hackernews-results.json`. 2 feeds (`top` 26 + `best` 17) → **34 unique items** (9 overlap: `49324985` Qwen 3.8 27B, `49324087` Anthropic Claude watermarks, `49330781` DuckDB v2.0, `49326816` Linear algebra, `49325789` AI regulation, `49325061` Reticulum, `49329575` GPT 5.6 Sol, `49330597` GitHub incident, `49323686` Nvidia/OpenAI infra reduction). 6 search queries (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`) returned **zero vendor-anchored hits** — `organoid` (6 nbHits, all string-collision noise on the "organi-" substring), `CelVivo` (0), `3Brain` (6 nbHits, all string-collision noise on the "brain" substring), `Cellink` (6 nbHits, all string-collision noise on "calling"/"ceiling"/"celine"/"welling" substrings), `openwiki` (0), `deepagents` (0). The "no material HN footprint for the 4 vendor lines" finding continues to hold — this is the **sixth pull since 2026-08-07 to have an empty / noise-only Algolia lane on vendor queries** (after the 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 + 2026-08-15 + 2026-08-16 fully-zero pulls; the 2026-08-10 + 2026-08-12 pulls were also noise-only on the substring queries); Tavily (web-search) remains the productive lane for vendor news. **Three adjacents worth flagging for traceability** — **`49323381` "Stripe will reportedly acquire OpenRouter for $7B+"** (439 pts, 271 cmts, best, TechCrunch, `zacharyozer`, https://techcrunch.com/2026/08/16/stripe-will-reportedly-acquire-ai-gateway-startup-openrouter-for-7b/) — strongest single business event in the AI inference lane this pull, OpenRouter is a primary MiniMax-adjacent inference provider alongside the direct MiniMax-M3 HuggingFace + Tweet launch points; **`49331423` "AI-Generated GitHub Copilot 'Autofix' Allowed Compromise of Snowflake's Jira"** (168 pts, 81 cmts, top, Wiz blog, `galnagli`, https://www.wiz.io/blog/red-agent-snowflake-copilot-cicd-bug) — strongest agent-supply-chain / agent-tool-use security incident to surface on HN top this year, an AI-generated code suggestion from GitHub Copilot's agentic self-fix feature was allowed to merge into Snowflake's CI/CD and compromise the Snowflake Jira instance; **`49332326` "Show HN: Agent Mesh – Shared memory for multi-Agent coordination"** (1 pt, top, `balgeman`, github.com/cbalgeman/agent-mesh) — adjacent to the `agent-memory-architecture` macro-pattern (Human + multi-Agent shared memory + SQLite Agent Mail + decision log + Workbench dashboard + Claude + CODEX via `codex exec` + all decision modifications require Human approval), but 1-pt engagement keeps it adjacent-not-promoted and the implementation uses SQLite + ids rather than OKF frontmatter; surfaced as a `Cellink` Algolia string-collision noise hit on the word "calling" in body text, not because it relates to Cellink bioprinters. Two additional flag-for-traceability items stay adjacent-not-promoted: **`49324985` Qwen 3.8 27B is excellent, but it defaults to overthinking things** (732 pts, 344 cmts, top+best, Simon Willison, `bilsbie` — **highest-engagement item of the pull**; open-weight AI, off-scope per brief; the third Qwen 3.8× item across three pulls in 7 days confirms the recurrence but the open-weight-AI scope rule still applies); **`49324087` Anthropic's 'watermark' text adulteration in Claude is a perversion of writing** (670 pts, 577 cmts, top+best, Daring Fireball, `ropbear` — Claude watermarking critique, off-scope per brief). **Key call**: this pull produces **no directly-relevant item for any `/themes.md` row** — the closest items either (a) are upstream business events at non-named-stack vendors (Stripe / OpenRouter / Copilot / Simon Willison's open-weight review lane) that stay adjacent under the established scope rule, or (b) sit on the agent-memory / shared-decision-log lane where the 1-pt Agent Mesh Show HN doesn't corroborate the OKF+memory schema pattern that drove the 2026-08-13 MCP Memory / OKF refresh. The `class-organoid-3d-bioprinting` row stays at Last seen 2026-08-12 (no organoid item — the 6 organoid Algolia hits are all string-collision noise); the `agent-memory-architecture` row stays at Last seen 2026-08-13 (Agent Mesh at 1 pt is below the established refresh threshold + uses SQLite rather than OKF); the `MiniMax-m3` row stays at Last seen 2026-08-03 (no MiniMax model release; `49323381` Stripe-OpenRouter is an upstream business event, not a MiniMax change); the `hermes-agent-v0-19-quicksilver` row stays at Last seen 2026-08-03 (no Hermes Agent release; `49331423` Copilot Autofix is a GitHub Copilot incidentLine truncated
**Latest update — hackernews-1 (2026-08-16T18:00Z).** One source-specific update run for `hackernews-1` (Hacker News — LLM-agent topic set) per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=hackernews` and wrote raw data at `~/.openwiki/connectors/hackernews/raw/2026-08-16T18-00-02-618Z/hackernews-results.json`. 2 feeds (`top` 19 + `best` 12) → **25 unique items** (6 overlap: `49313428` Super El Niño, `49314235` Cultivating a state of mind, `49314902` Software Engineering fundamentals, `49319389` Research papers using "kidney disappointment", `49319556` Claude System Prompts, `49319633` Firefox for iOS native adblocker). 6 search queries (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`) returned **zero hits across all six** — all six Algolia queries returned `nbHits=0`. The "no material HN footprint for the 4 vendor lines" finding continues to hold — this is the **fifth pull since 2026-08-07 to have a fully-zero Algolia lane** (after the 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 + 2026-08-15 pulls; the 2026-08-10 + 2026-08-12 pulls had Algolia hits that were all string-collision noise rather than fully-zero); Tavily (web-search) remains the productive lane for vendor news. **Two adjacents worth flagging for traceability** — **`49316271` "Patterns and problems in emerging multi-agent systems"** (169 pts, 124 cmts, best, Anthropic research blog, `maxutility`, https://www.anthropic.com/research/multiagent-systems) — research piece on multi-agent system patterns that touches Robin's broader agent-stack lane (Hermes Agent v0.19 Quicksilver's live subagent feature is the primary multi-agent pattern on Robin's named stack); **`49319814` "Show HN: A public AI whose memory is shared across all users"** (40 pts, 28 cmts, top, wildstatic.com, `adjohu`) — adjacent to the `agent-memory-architecture` theme (shared-memory concept) but the pattern is end-user-shared memory vs. the OKF/Karpathy/MCP-Memory agent-side memory architecture. Both items stay **adjacent-not-promoted** under the existing scope discipline (per the 2026-08-13 MCP Memory / OKF Show HN anchor and the 2026-08-10 Muse Glimmer / 2026-08-13 DeepSeek Harness / 2026-07-30 Codex CLI cluster traceability entries). Five additional flag-for-traceability items stay adjacent-not-promoted: **`49312845` AI isn't outthinking mathematicians, it's out-remembering them** (558 pts, 468 cmts, best — highest-engagement item of the pull; AI-reasoning essay, off-scope); **`49314403` Abdominal fat predicts heart disease risk better than BMI** (308 pts, 275 cmts, best — American College of Cardiology press release, clinical cardiovascular, outside Robin's 4 application domains); **`49313367` AI in drug discovery — what it is, where we stand and the path forward** (173 pts, 86 cmts, best — Science.org blog, drug-discovery umbrella topic, outside Robin's 4 application domains); **`49321353` NIH is ending a key grant for budding clinical researchers** (38 pts, 7 cmts, top — Science.org news, clinical research funding, outside Robin's 4 application domains); **`49319389` Research papers using "kidney disappointment" instead of "kidney failure"** (251 pts, 97 cmts, top+best — Scholar search-result post, clinical nephrology, outside Robin's 4 application domains). **Key call**: this pull produces **no directly-relevant item for any `/themes.md` row** — the closest items either (a) fall outside Robin's 4 application domains (clinical cardiovascular / drug discovery / clinical research funding / nephrology) and stay off the `class-organoid-3d-bioprinting` watchlist per the "domain-anchored only" scope rule, or (b) sit on the AI-agent / multi-agent / shared-memory lane where the established scope rule keeps non-named-stack agent-architecture research adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself. The `class-organoid-3d-bioprinting` row stays at Last seen 2026-08-12 (no organoid item); the `agent-memory-architecture` row stays at Last seen 2026-08-13 (no OKF / MCP Memory item — `49319814` Show HN doesn't corroborate the OKF+memory schema pattern); the `MiniMax-m3` row stays at Last seen 2026-08-03 (no MiniMax model release); the `hermes-agent-v0-19-quicksilver` row stays at Last seen 2026-08-03 (no Hermes Agent release); the `openwiki-brand` watchlist row stays at Last seen 2026-07-16 (no positive `openwiki` hits). The HN lane's stable role is now "high-engagement agent-stack adjacents (Codex / DeepSeek / Muse Glimmer / MCP / Docker Sandboxes / Claude Code / Anthropic multi-agent research) + low-engagement application-domain watchlist items (organoid / neuroscience / Wired features)" rather than vendor-direct signals. Wiki edits this run: (a) `/sources/hackernews.md` — added new "Latest update — 2026-08-16 18:00 UTC" section ahead of Line truncated
@@ -66,7 +72,7 @@ When Robin is ready, configure connectors to start populating the wiki:
- **Slack** — `openwiki auth slack` (needs Slack user token with `search:read` for definitive self-message search)
- **Notion** — configure Notion MCP via `~/.openwiki/connectors/notion/`
- **X / Twitter** — `openwiki auth x` (needs `OPENWIKI_X_ACCESS_TOKEN`)
- **Web Search** — set `TAVILY_API_KEY` (active; latest successful pull 2026-08-03 18:08 UTC; the 2026-08-08, 2026-08-10, and 2026-08-12 update attempts were skipped because the connector is not enabled in the runtime registry — see [/sources/web-search.md](/sources/web-search.md))
- **Web Search** — set `TAVILY_API_KEY` (active; latest successful pull 2026-08-03 18:08 UTC; the 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, and 2026-08-17 update attempts were skipped because the connector is not enabled in the runtime registry — see [/sources/web-search.md](/sources/web-search.md))
- **Hacker News** — public feeds, no auth needed
- **Local git repo** — point the `git-repo` connector at a repo path
@@ -80,9 +86,9 @@ Deferred until Robin configures connectors or asks for specific documentation:
- **Slack evidence index** — `/sources/slack.md` (no Slack connector configured yet)
- **Notion evidence index** — `/sources/notion.md` (no Notion MCP configured yet)
- **X / Twitter evidence index** — `/sources/x.md` (no X connector configured yet)
- **Hacker News evidence index** — `/sources/hackernews.md` (active; last refreshed 2026-08-16 18:00 UTC — source-specific LLM-agent topic set (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`); **fifth pull since 2026-08-07 to have a fully-zero Algolia lane** (after 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 + 2026-08-15 — the 2026-08-10 and 2026-08-12 pulls had Algolia hits that were all string-collision noise rather than fully-zero) — vendor-anchored footprint remains null on the HN lane and Tavily (web-search) remains the productive lane; **two adjacents worth flagging for traceability surfaced this pull: `49316271` "Patterns and problems in emerging multi-agent systems"** (169 pts, 124 cmts, best, Anthropic research blog, `maxutility`, https://www.anthropic.com/research/multiagent-systems) — research piece on multi-agent system patterns that touches the Hermes Agent v0.19 Quicksilver multi-agent-subagent lane; **`49319814` "Show HN: A public AI whose memory is shared across all users"** (40 pts, 28 cmts, top, wildstatic.com, `adjohu`) — adjacent to the `agent-memory-architecture` theme (shared-memory concept) but the pattern is end-user-shared memory vs. the OKF/Karpathy/MCP-Memory agent-side memory architecture. **Both items stay adjacent-not-promoted** per the established scope rule that non-named-stack agent-architecture research + non-OKF shared-memory implementations stay adjacent-not-promoted unless they directly corroborate the existing row's pattern — so no `/themes.md` row Last-seen refresh; five additional flag-for-traceability items surfaced this run (all adjacent-not-promoted under existing scope discipline): **AI isn't outthinking mathematicians, it's out-remembering them** (558 pts, 468 cmts, best — highest-engagement item of the pull; AI-reasoning essay, off-scope), **Abdominal fat predicts heart disease risk better than BMI** (308 pts, 275 cmts, best — American College of Cardiology press release, clinical cardiovascular, outside Robin's 4 application domains), **AI in drug discovery — what it is, where we stand and the path forward** (173 pts, 86 cmts, best — Science.org blog, drug-discovery umbrella topic, outside Robin's 4 application domains), **Research papers using "kidney disappointment" instead of "kidney failure"** (251 pts, 97 cmts, top+best — Scholar search-result post, clinical nephrology, outside Robin's 4 application domains), **NIH is ending a key grant for budding clinical researchers** (38 pts, 7 cmts, top — Science.org news, clinical research funding, outside Robin's 4 application domains) — see HN source page)
- **Web search evidence index** — `/sources/web-search.md` (active; last successful pull 2026-08-03 18:08 UTC — first pull after the 3-day outage streak; CELLINK × Volumetric new Lumen X + 3Brain Utrecht Summer School + CelVivo ClinoStar 2 / Thailand Lab 2026 surfaced, see source page; 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, and 2026-08-16 update attempts skipped — connector not enabled in runtime registry, `TAVILY_API_KEY` missing; disk config shows `enabled: true` + 6 Chinese queries but the runtime registry disagrees — operational concern, not a wiki-synthesis concern)
- **Git repo evidence index** — `/sources/git-repo.md` (active; last refreshed 2026-08-15 18:07 UTC — covers Robin's Obsidian vault (HEAD `297f106d` 2026-08-12, **unchanged across both the 2026-08-13 and 2026-08-15 fetches** — 0 new vault commits in the 2026-08-13T18:08Z → 2026-08-15T18:07Z 48-hour window) + OpenWiki wiki (HEAD `2507925` 2026-08-15, **4 new wiki commits since 2026-08-13**: `021e929` daily update 2026-08-14 + `6258717` sources-sync 2026-08-14 + `173b58c` daily update 2026-08-15 + `2507925` sources-sync 2026-08-15); 13 vault commits since 2026-08-03 fetch including the **2026-08-12 Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3 轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型; Wiki.js Id=1716, NocoDB Id=770); **23 untracked vault files** unchanged from the 2026-08-13 fetch (no new untracked files in the 24-hour window) — including 8 × `02-Clients/Agents/区域-2026-0807.md` distributors-rebuild + `_known_associations.md` association index + **the first entry in the new `Review/` subfolder** (`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — Zhou 2023 computer vision + microfluidics, Robin deep-read in progress, still-uncommitted at the 2026-08-15 fetch) + `__pycache__/...pyc` Python build noise; wiki-side carries **10 uncommitted synthesis-layer edits** accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + web-search-1 2026-08-15 + this git-repo-1 2026-08-15 runs; **one operational issue surfaced this run** — the `2507925` 2026-08-15 sources-sync committed empty count values for NocoDB / SeaFile / Wiki.js / RAGFlow (NocoDB 6614 → 0 records, Wiki.js 83 → 0 unique pages, RAGFlow landing 200 → 000); the on-disk source configs are unaffected; data is recoverable from `git show 1737454:sources/nocodb.md` etc. — recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page; the synthesis layer (themes / commitments / open-questions / personal-logistics) is independent of the source-page counters and is not affected)
- **Hacker News evidence index** — `/sources/hackernews.md` (active; last refreshed 2026-08-17 18:00 UTC — source-specific LLM-agent topic set (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`); **sixth pull since 2026-08-07 to have an empty / noise-only Algolia lane on vendor queries** (after the 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 + 2026-08-15 + 2026-08-16 fully-zero pulls; the 2026-08-10 + 2026-08-12 pulls were also noise-only on the substring queries) — vendor-anchored footprint remains null on the HN lane and Tavily (web-search) remains the productive lane; **three adjacents worth flagging for traceability surfaced this pull: `49323381` "Stripe will reportedly acquire OpenRouter for $7B+"** (439 pts, 271 cmts, best, TechCrunch, `zacharyozer`, https://techcrunch.com/2026/08/16/stripe-will-reportedly-acquire-ai-gateway-startup-openrouter-for-7b/) — strongest single business event in the AI inference lane this pull, OpenRouter is a primary MiniMax-adjacent inference provider; **`49331423` "AI-Generated GitHub Copilot 'Autofix' Allowed Compromise of Snowflake's Jira"** (168 pts, 81 cmts, top, Wiz blog, `galnagli`) — strongest agent-supply-chain / agent-tool-use security incident to surface on HN top this year, AI-generated code from Copilot's self-fix feature compromised Snowflake's Jira instance; **`49332326` "Show HN: Agent Mesh – Shared memory for multi-Agent coordination"** (1 pt, top, `balgeman`) — adjacent to the `agent-memory-architecture` macro-pattern (Human + multi-Agent shared memory + SQLite Agent Mail + decision log + Workbench dashboard + Claude + CODEX via `codex exec` + all decision modifications require Human approval), but 1-pt engagement keeps it adjacent-not-promoted and the implementation uses SQLite + ids rather than OKF frontmatter; surfaced as a `Cellink` Algolia string-collision noise hit. **All three stay adjacent-not-promoted** per the established scope rule that inference-provider business events + non-named-stack agent-security incidents + non-OKF shared-memory implementations stay adjacent-not-promoted unless they directly corroborate the existing row's pattern — so no `/themes.md` row Last-seen refresh; two additional flag-for-traceability items stay adjacent-not-promoted under existing scope discipline: **`49324985` Qwen 3.8 27B is excellent, but it defaults to overthinking things** (732 pts, 344 cmts, top+best, Simon Willison, `bilsbie` — **highest-engagement item of the pull**; open-weight AI, off-scope per brief); **`49324087` Anthropic's 'watermark' text adulteration in Claude is a perversion of writing** (670 pts, 577 cmts, top+best, Daring Fireball, `ropbear` — Claude watermarking critique, off-scope per brief) — see HN source page)
- **Web search evidence index** — `/sources/web-search.md` (active; last successful pull 2026-08-03 18:08 UTC — first pull after the 3-day outage streak; CELLINK × Volumetric new Lumen X + 3Brain Utrecht Summer School + CelVivo ClinoStar 2 / Thailand Lab 2026 surfaced, see source page; 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, and 2026-08-17 update attempts skipped — connector not enabled in runtime registry, `TAVILY_API_KEY` missing; disk config shows `enabled: true` + 6 Chinese queries but the runtime registry disagrees — operational concern, not a wiki-synthesis concern)
- **Git repo evidence index** — `/sources/git-repo.md` (active; last refreshed 2026-08-17 18:09 UTC — covers Robin's Obsidian vault (HEAD `a4fa5a32` 2026-08-16, **7 new vault commits since the 2026-08-15 fetch**: the 2026-08-16 **Quintard 2024 Nat Commun microfluidic vascularized organoid chip 4-commit LDR cycle** `0fc8db24` → `290e9635` → `24c713de` → `4073abf4` [Wiki IDs 1719/1720/1722, NocoDB Id 3297] + the 2026-08-16 **Guo 2026 Front Cell Dev Biol organoid ethics systematic review 3-commit LDR cycle** `2e6f5989` → `00f824f2` → `a4fa5a32` [Wiki ID 1724, NocoDB Id 3298] — **first time two new paper deep-reads landed on `main` in the same 48-hour window since the 2026-07-28 / 2026-07-29 Parate / Lee / Hodge cluster**) + OpenWiki wiki (HEAD `be49285` 2026-08-17, **4 new wiki commits since the 2026-08-15 fetch**: `151d22b` daily update 2026-08-16 + `997b648` sources-sync 2026-08-16 + `5c70881` daily update 2026-08-17 + `be49285` sources-sync 2026-08-17) + **1 new wiki file**: `sources/openwiki-version-drift.md` (auto-generated OpenWiki version-drift monitor; v0.3.1 local → v0.3.3 npm latest as of 2026-08-15T20:00:03Z); **20 vault commits since 2026-08-03 fetch** (was 13 at the 2026-08-15 fetch; the +7 delta is the Quintard 2024 + Guo 2026 clusters); **23 untracked vault files + 2 new untracked directories**: 8 × `02-Clients/Agents/区域-2026-0807.md` distributors-rebuild + `_known_associations.md` association index + **the first entry in the new `Review/` subfolder** (`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — Zhou 2023 computer vision + microfluidics, Robin deep-read in progress, still-uncommitted at the 2026-08-17 fetch) + `__pycache__/...pyc` Python build noise + **NEW** `celvivo_commercial/1331651_20260630_131201.pdf` (6-30 quote PDF migrated into new folder) + **NEW** `templates/类器官IRB申请清单.md` v1.0 (180 lines, derived from the Guo 2026 ethics deep-read — **first customer-facing template produced from a single deep-read**); wiki-side carries **9 uncommitted synthesis-layer edits** (down from 10 at the 2026-08-15 fetch — `sources/index.md` got committed in `151d22b`) accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + HN-1 2026-08-16 + HN-1 2026-08-17 + web-search-1 2026-08-15 + web-search-1 2026-08-17 + git-repo-1 2026-08-13 + git-repo-1 2026-08-15 + this git-repo-1 2026-08-17 runs; **operational issue carries forward** — the `2507925` 2026-08-15 sources-sync count-data wipe (NocoDB 6614 → 0 records, Wiki.js 83 → 0 unique pages, RAGFlow landing 200 → 000) is now re-applied by the `997b648` 2026-08-16 sources-sync and the `be49285` 2026-08-17 sources-sync (NocoDB / Wiki.js / RAGFlow count values stay zero across all 3 sources-syncs); the on-disk source configs are unaffected; data is recoverable from `git show 1737454:sources/nocodb.md` etc. — recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page; the synthesis layer (themes / commitments / open-questions / personal-logistics) is independent of the source-page counters and is not affected)
- **Project / people / company pages** — only created when durable entities emerge from ingested data
These are intentionally blank until there is real evidence to put in them. Populating them with placeholders would dilute the synthesis layer..esis layer..sis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3 轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型; Wiki.js Id=1716, NocoDB Id=770); **23 untracked vault files** unchanged from the 2026-08-13 fetch (no new untracked files in the 24-hour window) — including 8 × `02-Clients/Agents/区域-2026-0807.md` distributors-rebuild + `_known_associations.md` association index + **the first entry in the new `Review/` subfolder** (`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — Zhou 2023 computer vision + microfluidics, Robin deep-read in progress, still-uncommitted at the 2026-08-15 fetch) + `__pycache__/...pyc` Python build noise; wiki-side carries **10 uncommitted synthesis-layer edits** accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + web-search-1 2026-08-15 + this git-repo-1 2026-08-15 runs; **one operational issue surfaced this run** — the `2507925` 2026-08-15 sources-sync committed empty count values for NocoDB / SeaFile / Wiki.js / RAGFlow (NocoDB 6614 → 0 records, Wiki.js 83 → 0 unique pages, RAGFlow landing 200 → 000); the on-disk source configs are unaffected; data is recoverable from `git show 1737454:sources/nocodb.md` etc. — recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page; the synthesis layer (themes / commitments / open-questions / personal-logistics) is independent of the source-page counters and is not affected)