openwiki-wiki/themes/index.md

Files

• Theme 1 · Organoid culture and equipment (CelVivo / 3Brain) - Synthesis page for Robin's organoid culture and equipment theme — CelVivo ClinoStar/ClinoReactor for 3D suspension culture and 3Brain HD-MEA for neural/cardiac electrophysiology readout.
• Theme 2 · 3D bioprinting (Cellink / BIONOVA) - Synthesis page for Robin's 3D bioprinting theme — Cellink BIO X / BIONOVA X / Lumen X extrusion and DLP printing hardware for tissue engineering, drug tablets, and scaffold fabrication.
• Theme 3 · AI Agent tools (Hermes / Codex / MiniMax code) - Synthesis page for Robin's daily-driver AI agent stack — Hermes Agent on WSL, MiniMax code on the desktop, Codex CLI fallback, OpenWiki as cross-agent memory substrate, and supporting toolchain (RustDesk, Gitea, Wiki.js, RAGFlow).
• Theme 4 · Local LLM deployment (Ollama / bge-reranker / RAGFlow) - Synthesis page for Robin's local-LLM fleet — Ollama serve + qwen2.5vl:7b vision model + BAAI/bge-m3 embeddings (Ollama + LM Studio) + bge-reranker rerank + RAGFlow KB retrieval + adjacent NAS subsystems (NocoDB / SeaFile / Wiki.js / Feishu mail).
• Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM) - Synthesis page for Robin's personal research portfolio — Obsidian vault + literature deep-read pipeline + sales ammunition + China distributor map + active CRM profiles + work-rhythm snapshots. Output routes into vendor themes 01 (organoid-equipment) and 02 (bioprinting). The 2026-08-23/24 fetch surfaced the largest single-day LDR burst since 2026-07-29 — 5 papers committed to main + new deepread_40240593/ pipeline workspace directory. The 2026-08-26 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 fetches observed vault HEAD unchanged at 9d4767c7 (vault silent for the 1st + 2nd + 3rd + 4th + 5th consecutive fetches since the 2026-08-24/25 SECOND 5-paper LDR burst, 5 calendar days stale). The 2026-08-31 fetch observed vault HEAD bumped 9d4767c7 → 391e4713 — THIRD consecutive single-day 5-paper LDR burst (Stewart + Aiello + Nguyen + Miao + Yan, all CelVivo-anchored, all in the NEW obsidian-vault/04-Literature/Deep-Reads/CelVivo/ capital-V subfolder — Robin's first parallel-naming deep-read subfolder convention), ending the 5-day vault silence; combined with the 2026-08-23/24 + 2026-08-24/25 clusters, 15 LDR files in 8 calendar days = the largest sustained 8-day research output in Robin's vault activity log. The 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 fetches observed vault HEAD unchanged at 391e4713 (vault silent for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th consecutive fetches since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR burst, 9 calendar days stale). The 2026-09-11 fetch observed vault HEAD bumped 391e4713 → 09bec367 — vault silence streak BROKEN after 11 calendar days with 2 new vault commits: 1fd63019 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, 0 vendor callouts) + 09bec367 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, first v4 Flywheel auto-sink pipeline entry); the pipeline has resumed after the 11-day pause. The 4 carry-forward untracked directories (Review + templates + celvivo_commercial + deepread_40240593) bump their carry-forward counts to 30/25/25/18 days at the 2026-09-11T18:14Z fetch — the Review/ + templates/ + celvivo_commercial/ entries remain confirmed one-off (carrying forward unchanged since the 2026-08-28 fetch) and continue as stale / not recurring carry-forward notes; the deepread_40240593/ working-folder pipeline hypothesis continues to weaken (mtime unchanged across 17 consecutive silent fetches since the 2026-08-24/25 burst). The 2026-09-13T18:08Z fetch is the 31st git-repo-1 fetch of the 2026-08-07 streak + the 2nd consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367); 1 working-tree modification was observed at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) — Robin actively editing the MOC index file but NOT yet committed; the 4 carry-forward untracked directories bump to 32/27/27/20 days at the 2026-09-13T18:08Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 4 new automated wiki commits in the 48-hour window (7cfb801 sources-sync 2026-09-12 twenty-ninth + 999a37d daily update 2026-09-12 + 0447186 daily update 2026-09-13 + 5f33bd3 sources-sync 2026-09-13 thirtieth) bumped wiki HEAD 55d930f → 5f33bd3; the 8-dirty-file baseline (down from the prior 10-dirty-file baseline) shows the daily-update cycle cleared index.md + quickstart.md + sources/git-repo.md + themes.md while sources/openwiki-version-drift.md was newly re-touched; synthesis-layer impact is none because vault produced no new external evidence. The 2026-09-16T18:18Z fetch is the 32nd git-repo-1 fetch of the 2026-08-07 streak + the 5th consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367, 5 calendar days of vault silence); the 1 working-tree modification at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) persists uncommitted for 3 calendar days at the 2026-09-16T18:18Z fetch without further changes; the 4 carry-forward untracked directories bump to 35/30/30/23 days at the 2026-09-16T18:18Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 6 new automated wiki commits in the 72-hour window (667730f daily update 2026-09-14 + 09f47d6 sources-sync 2026-09-14 thirty-first + f38cebf daily update 2026-09-15 + f5465f9 sources-sync 2026-09-15 thirty-second + 73dae5e daily update 2026-09-16 + ac46732 sources-sync 2026-09-16 thirty-third) bumped wiki HEAD 5f33bd3 → ac46732; the 11-dirty-file baseline (up from the prior 8-dirty-file baseline) shows the 3 daily-update cycles re-touched index.md + quickstart.md + themes.md + the 3 sources-syncs re-touched the 4 source-sync files each cycle; synthesis-layer impact is none because vault produced no new external evidence. The 2026-09-17T18:22Z fetch is the 33rd git-repo-1 fetch of the 2026-08-07 streak + the 6th consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367, 6 calendar days of vault silence); the 1 working-tree modification at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) persists uncommitted for 4 calendar days at the 2026-09-17T18:22Z fetch without further changes; the 4 carry-forward untracked directories bump to 36/31/31/24 days at the 2026-09-17T18:22Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 2 new automated wiki commits in the 24-hour window (3d95e56 daily update 2026-09-17 + 307e038 sources-sync 2026-09-17 thirty-fourth) bumped wiki HEAD ac46732 → 307e038; the 10-dirty-file baseline (down from the prior 11-dirty-file baseline) shows the 3d95e56 daily update cleared index.md + sources/README.md while sources/literature.md was newly re-touched; synthesis-layer impact is none because vault produced no new external evidence. The 2026-09-18T18:15Z fetch is the 34th git-repo-1 fetch of the 2026-08-07 streak + the 7th consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367, 7 calendar days of vault silence); the 1 working-tree modification at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) persists uncommitted for 5 calendar days at the 2026-09-18T18:15Z fetch without further changes; the 4 carry-forward untracked directories bump to 37/32/32/25 days at the 2026-09-18T18:15Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 2 new automated wiki commits in the 24-hour window (46a508d daily update 2026-09-18 + c6e81a5 sources-sync 2026-09-18 thirty-fifth) bumped wiki HEAD 307e038 → c6e81a5; the 11-dirty-file baseline (up from the prior 10-dirty-file baseline at 2026-09-17) shows the 46a508d daily update re-touched the same synthesis-layer files while sources/index.md was newly re-touched and sources/README.md was cleared from the dirty list; synthesis-layer impact is none because vault produced no new external evidence.