66 lines
9.7 KiB
Markdown
66 lines
9.7 KiB
Markdown
---
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type: "Reference"
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title: "Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)"
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description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `391e4713`, 2026-09-07, **vault HEAD unchanged** at the 2026-08-31T18:09Z fetch level for the 7th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster, **0 new vault commits** in the 2026-09-06T18:19Z → 2026-09-07T18:08Z 24-hour window, **7 calendar days of vault silence** since the 2026-08-31 cluster (Yan + Stewart + Nguyen + Aiello + Miao all `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 26 → **27-day carry-forward** (24 → **25 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 21 → **22-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + **2026-09-07** fetches), `deepread_40240593/` 14 → **15-day carry-forward** (mtime unchanged across **14 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `3e04ce75d3b61e5c71c0c86f655097004084c713`, 2026-09-07, **2 new automated wiki commits in the 2026-09-06T18:19Z → 2026-09-07T18:08Z 24-hour window: `56aeb69` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-07 — the **twenty-fourth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + `bd30339` 2026-08-20 + `f6c2576` 2026-08-21 + `43d4548` 2026-08-22 + `8f8f767` 2026-08-23 + `127c2dc` 2026-08-24 + `1003b92` 2026-08-25 + `ebb95c0` 2026-08-26 + `502281f` 2026-08-27 + `c992dd6` 2026-08-28 + `37d1ba6` 2026-08-29 + `d56da3a` 2026-08-30 + `9582dea` 2026-08-31 + `0890fdb` 2026-09-01 + `cedbb7f` 2026-09-02 + `58168e7` 2026-09-03 + `88635ed` 2026-09-04 + `0be3b8a` 2026-09-05 + `0f8555e` 2026-09-06 + now `56aeb69` 2026-09-07) committed `sources/{nocodb,ragflow,seafile,wikijs}.md` re-touched by the sources-sync, then `3e04ce7` chore: daily update 2026-09-07 (per `git show --stat 3e04ce7` the commit touched 16 files including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/openwiki-version-drift.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md`); the very next synthesis edits from the HN-1 2026-09-07 (skipped, next pull after the 2026-09-06 18:00 UTC pull — the 2026-09-07T18:08Z fetch is the git-repo-1 slot in the daily update cycle) + web-search-1 2026-09-07 (skipped) + this git-repo-1 2026-09-07T18:08Z run re-touched files leaving the dirty count at **4 per the manifest `changedFiles` list** — `M .last-update.json` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/web-search.md` — **down from 11** at the 2026-09-06T18:19Z fetch (the `3e04ce7` daily update on 2026-09-07 re-touched 16 files including all 11 from the 2026-09-06 dirty baseline + 5 more, then the synthesis edits cleared 12 of those via commit leaving only 4 still dirty); the 4-dirty-file list does not include `index.md` (the `3e04ce7` daily update on 2026-09-07 re-touched it then cleared it via commit) or `sources/git-repo.md` + `sources/README.md` + `sources/index.md` (the `3e04ce7` daily update on 2026-09-07 re-touched them then cleared them via commit) or `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` + `sources/openwiki-version-drift.md` (the `3e04ce7` daily update on 2026-09-07 re-touched them via commit + the `56aeb69` sources-sync on 2026-09-07 re-touched 4 of those) or `themes.md` + `themes/05-robin-research.md` + `themes/index.md` (the `3e04ce7` daily update on 2026-09-07 re-touched them then cleared them via commit)**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
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tags: [sources, git-repo, vault, wiki, manifest, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, vault-silent-7d, twenty-fourth-sources-sync, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-fifteen-silent-fetches]
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timestamp: 2026-09-07T18:08:00Z
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---
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# Git repo — evidence index
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This page is the **compact source-evidence index** for the local git-repo connector, which ingests Robin's Obsidian vault (`/home/ldw/workspace`) and the local OpenWiki wiki (`/home/ldw/.openwiki/wiki`). Each ingestion run writes a JSON manifest under `~/.openwiki/connectors/git-repo/raw/`.
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## Source config
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- Connector config path: `~/.openwiki/connectors/git-repo/config.json`
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- Two configured local repos:
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- `obsidian-vault` at `/home/ldw/workspace` (branch: `main`, HEAD `391e4713`, 2026-08-31 — 35 commits since 2026-08-03 fetch)
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- `openwiki-wiki` at `/home/ldw/.openwiki/wiki` (branch: `main`, HEAD `3e04ce7`, 2026-09-07)
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- Authentication: local path only — no remote, no credentials
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## Latest manifest
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- `~/.openwiki/connectors/git-repo/raw/2026-09-07T18-08-20-982Z/manifest.json` (generated 2026-09-07T18:08:21Z)
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- Vault HEAD: `391e47131679ce9edf0f525236e78ebb13e0d232` (unchanged since 2026-08-31T13:42 +0800)
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- Wiki HEAD: `3e04ce75d3b61e5c71c0c86f655097004084c713` (bumped from `0f8555e` at 2026-09-07)
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- **0 new vault commits** in the 24-hour window (vault silent for the 7th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster)
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- **2 new automated wiki commits** in the 24-hour window (`56aeb69` sources-sync 2026-09-07 — the **twenty-fourth** consecutive sources-sync + `3e04ce7` daily update 2026-09-07)
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- 4 uncommitted wiki files in working tree per the manifest `changedFiles` list (down from 11 at the 2026-09-06T18:19Z fetch; the `3e04ce7` daily update cleared `index.md` + `sources/{git-repo,README,index}.md` + `sources/{nocodb,ragflow,seafile,wikijs,openwiki-version-drift}.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` via commit, leaving only `M .last-update.json` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/web-search.md` still dirty after the synthesis edits)
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## Carry-forward untracked directories
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| Directory / file | Carry-forward | Fetches silent | Status |
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| --- | ---: | ---: | --- |
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| `Review/zhou2023_computer_vision_microfluidics.md` | **27-day** | 25 | stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch) |
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| `celvivo_commercial/` | **22-day** | 22 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
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| `templates/` | **22-day** | 22 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
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| `deepread_40240593/` | **15-day** | 14 | working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 14 consecutive silent fetches since creation) |
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## Recent commits — vault (last 5)
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The most recent vault commits remain the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR burst (no new commits in the 24-hour window):
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1. `391e4713` 2026-08-31 — deep-read: Yan 2024 Cell Reports TMEM106B SARS-CoV-2 ACE2-independent brain organoids (CelVivo)
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2. `4fca0123` 2026-08-31 — deep-read: Miao 2025 Cell vascularized lung/gut organoids (CelVivo ClinoReactor)
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3. `fad7e21e` 2026-08-31 — deep-read: Nguyen 2024 npj Viruses JEV G4 2022 Australia brain organoids (CelVivo)
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4. `030f31ed` 2026-08-31 — deep-read: Aiello 2025 EMBO reports reproducible brain organoids (CelVivo ClinoReactor)
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5. `eb24ab72` 2026-08-31 — deep-read: Stewart 2023 Front Microbiol BA.5/XBB neurotropic brain organoids (CelVivo)
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## Recent commits — wiki (last 5)
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1. `3e04ce7` 2026-09-07 — chore: daily update 2026-09-07 (16 files modified per `git show --stat 3e04ce7`)
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2. `56aeb69` 2026-09-07 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-07, **twenty-fourth** consecutive sources-sync)
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3. `0f8555e` 2026-09-06 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-06, **twenty-third** consecutive sources-sync)
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4. `2c75e4a` 2026-09-06 — chore: daily update 2026-09-06 (16 files modified per `git show --stat 2c75e4a`)
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5. `0be3b8a` 2026-09-05 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-05, twenty-second consecutive sources-sync)
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## Synthesis-policy — this run
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- Vault delta: empty (no new commits, no new mtime changes).
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- Wiki delta: automated maintenance only (CLI metadata cycle + sources-sync + daily update).
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- Synthesis-layer impact: **none**. The themes / commitments / open-questions / personal-logistics pages are independent of the wiki-side automated maintenance commits.
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- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-07T18:08Z)" paragraph on `/quickstart.md` for the full delta list.
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## Previous run
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- 2026-09-06T18:19Z — vault HEAD unchanged at `391e4713`, 2 new wiki commits (`2c75e4a` + `0f8555e` — the **twenty-third** consecutive sources-sync), 11-dirty-file baseline, the 4 carry-forward untracked directories bumped to 26/21/21/14-day carry-forward. See [`/themes/05-robin-research.md`](/themes/05-robin-research.md) + `/quickstart.md` for the full synthesis of that run. |