openwiki-wiki/themes/index.md

Files

• Theme 1 · Organoid culture and equipment (CelVivo / 3Brain) - Synthesis page for Robin's organoid culture and equipment theme — CelVivo ClinoStar/ClinoReactor for 3D suspension culture and 3Brain HD-MEA for neural/cardiac electrophysiology readout.
• Theme 2 · 3D bioprinting (Cellink / BIONOVA) - Synthesis page for Robin's 3D bioprinting theme — Cellink BIO X / BIONOVA X / Lumen X extrusion and DLP printing hardware for tissue engineering, drug tablets, and scaffold fabrication.
• Theme 3 · AI Agent tools (Hermes / Codex / MiniMax code) - Synthesis page for Robin's daily-driver AI agent stack — Hermes Agent on WSL, MiniMax code on the desktop, Codex CLI fallback, OpenWiki as cross-agent memory substrate, and supporting toolchain (RustDesk, Gitea, Wiki.js, RAGFlow).
• Theme 4 · Local LLM deployment (Ollama / bge-reranker / RAGFlow) - Synthesis page for Robin's local-LLM fleet — Ollama serve + qwen2.5vl:7b vision model + BAAI/bge-m3 embeddings (Ollama + LM Studio) + bge-reranker rerank + RAGFlow KB retrieval + adjacent NAS subsystems (NocoDB / SeaFile / Wiki.js / Feishu mail).
• Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM) - Synthesis page for Robin's personal research portfolio — Obsidian vault + literature deep-read pipeline + sales ammunition + China distributor map + active CRM profiles + work-rhythm snapshots. Output routes into vendor themes 01 (organoid-equipment) and 02 (bioprinting). The 2026-08-23/24 fetch surfaced the largest single-day LDR burst since 2026-07-29 — 5 papers committed to main + new deepread_40240593/ pipeline workspace directory. The 2026-08-26 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 fetches observed vault HEAD unchanged at 9d4767c7 (vault silent for the 1st + 2nd + 3rd + 4th + 5th consecutive fetches since the 2026-08-24/25 SECOND 5-paper LDR burst, 5 calendar days stale). The 2026-08-31 fetch observed vault HEAD bumped 9d4767c7 → 391e4713 — THIRD consecutive single-day 5-paper LDR burst (Stewart + Aiello + Nguyen + Miao + Yan, all CelVivo-anchored, all in the NEW obsidian-vault/04-Literature/Deep-Reads/CelVivo/ capital-V subfolder — Robin's first parallel-naming deep-read subfolder convention), ending the 5-day vault silence; combined with the 2026-08-23/24 + 2026-08-24/25 clusters, 15 LDR files in 8 calendar days = the largest sustained 8-day research output in Robin's vault activity log. The 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 fetches observed vault HEAD unchanged at 391e4713 (vault silent for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th consecutive fetches since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR burst, 9 calendar days stale). The 2026-09-11 fetch observed vault HEAD bumped 391e4713 → 09bec367 — vault silence streak BROKEN after 11 calendar days with 2 new vault commits: 1fd63019 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, 0 vendor callouts) + 09bec367 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, first v4 Flywheel auto-sink pipeline entry); the pipeline has resumed after the 11-day pause. The 4 carry-forward untracked directories (Review + templates + celvivo_commercial + deepread_40240593) bump their carry-forward counts to 30/25/25/18 days at the 2026-09-11T18:14Z fetch — the Review/ + templates/ + celvivo_commercial/ entries remain confirmed one-off (carrying forward unchanged since the 2026-08-28 fetch) and continue as stale / not recurring carry-forward notes; the deepread_40240593/ working-folder pipeline hypothesis continues to weaken (mtime unchanged across 17 consecutive silent fetches since the 2026-08-24/25 burst). The 2026-09-13T18:08Z fetch is the 31st git-repo-1 fetch of the 2026-08-07 streak + the 2nd consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367); 1 working-tree modification was observed at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) — Robin actively editing the MOC index file but NOT yet committed; the 4 carry-forward untracked directories bump to 32/27/27/20 days at the 2026-09-13T18:08Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 4 new automated wiki commits in the 48-hour window (7cfb801 sources-sync 2026-09-12 twenty-ninth + 999a37d daily update 2026-09-12 + 0447186 daily update 2026-09-13 + 5f33bd3 sources-sync 2026-09-13 thirtieth) bumped wiki HEAD 55d930f → 5f33bd3; the 8-dirty-file baseline (down from the prior 10-dirty-file baseline) shows the daily-update cycle cleared index.md + quickstart.md + sources/git-repo.md + themes.md while sources/openwiki-version-drift.md was newly re-touched; synthesis-layer impact is none because vault produced no new external evidence. The 2026-09-16T18:18Z fetch is the 32nd git-repo-1 fetch of the 2026-08-07 streak + the 5th consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367, 5 calendar days of vault silence); the 1 working-tree modification at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) persists uncommitted for 3 calendar days at the 2026-09-16T18:18Z fetch without further changes; the 4 carry-forward untracked directories bump to 35/30/30/23 days at the 2026-09-16T18:18Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 6 new automated wiki commits in the 72-hour window (667730f daily update 2026-09-14 + 09f47d6 sources-sync 2026-09-14 thirty-first + f38cebf daily update 2026-09-15 + f5465f9 sources-sync 2026-09-15 thirty-second + 73dae5e daily update 2026-09-16 + ac46732 sources-sync 2026-09-16 thirty-third) bumped wiki HEAD 5f33bd3 → ac46732; the 11-dirty-file baseline (up from the prior 8-dirty-file baseline) shows the 3 daily-update cycles re-touched index.md + quickstart.md + themes.md + the 3 sources-syncs re-touched the 4 source-sync files each cycle; synthesis-layer impact is none because vault produced no new external evidence. The 2026-09-17T18:22Z fetch is the 33rd git-repo-1 fetch of the 2026-08-07 streak + the 6th consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367, 6 calendar days of vault silence); the 1 working-tree modification at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) persists uncommitted for 4 calendar days at the 2026-09-17T18:22Z fetch without further changes; the 4 carry-forward untracked directories bump to 36/31/31/24 days at the 2026-09-17T18:22Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 2 new automated wiki commits in the 24-hour window (3d95e56 daily update 2026-09-17 + 307e038 sources-sync 2026-09-17 thirty-fourth) bumped wiki HEAD ac46732 → 307e038; the 10-dirty-file baseline (down from the prior 11-dirty-file baseline) shows the 3d95e56 daily update cleared index.md + sources/README.md while sources/literature.md was newly re-touched; synthesis-layer impact is none because vault produced no new external evidence. The 2026-09-18T18:15Z fetch is the 34th git-repo-1 fetch of the 2026-08-07 streak + the 7th consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367, 7 calendar days of vault silence); the 1 working-tree modification at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) persists uncommitted for 5 calendar days at the 2026-09-18T18:15Z fetch without further changes; the 4 carry-forward untracked directories bump to 37/32/32/25 days at the 2026-09-18T18:15Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 2 new automated wiki commits in the 24-hour window (46a508d daily update 2026-09-18 + c6e81a5 sources-sync 2026-09-18 thirty-fifth) bumped wiki HEAD 307e038 → c6e81a5; the 11-dirty-file baseline (up from the prior 10-dirty-file baseline at 2026-09-17) shows the 46a508d daily update re-touched the same synthesis-layer files while sources/index.md was newly re-touched and sources/README.md was cleared from the dirty list; synthesis-layer impact is none because vault produced no new external evidence. The 2026-09-19T18:04Z fetch is the 35th git-repo-1 fetch of the 2026-08-07 streak + the 8th consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367, 8 calendar days of vault silence); the 1 working-tree modification at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) persists uncommitted for 6 calendar days at the 2026-09-19T18:04Z fetch without further changes; the 4 carry-forward untracked directories bump to 38/33/33/26 days at the 2026-09-19T18:04Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 2 new automated wiki commits in the 24-hour window (1ba0fb1 sources-sync 2026-09-19 thirty-sixth + 6e2a733 daily update 2026-09-19) bumped wiki HEAD c6e81a5 → 6e2a733; the 5-dirty-file baseline (down from the prior 11-dirty-file baseline at 2026-09-18) shows the 6e2a733 daily update cycle cleared the prior dirty list (the standard 15-file cycle staging+committing 11 of the previously-dirty files) and 5 files were re-touched in the working tree post-commit (M .last-update.json + M sources/hackernews.md + M sources/index.md + M sources/web-search.md + M themes.md); synthesis-layer impact is none because vault produced no new external evidence. The 2026-09-20T18:07Z fetch is the 36th git-repo-1 fetch of the 2026-08-07 streak + the 9th consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367, 9 calendar days of vault silence); the 1 working-tree modification at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) persists uncommitted for 7 calendar days at the 2026-09-20T18:07Z fetch without further changes; the 4 carry-forward untracked directories bump to 39/34/34/27 days at the 2026-09-20T18:07Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 2 new automated wiki commits in the 24-hour window (95f286d sources-sync 2026-09-20 thirty-seventh + 49e3f63 daily update 2026-09-20) bumped wiki HEAD 6e2a733 → 95f286d; the 12-dirty-file baseline (up from the prior 5-dirty-file baseline at 2026-09-19) shows the 49e3f63 daily update cycle cleared the prior 5-dirty-file baseline (the standard 15-file cycle per git show --stat 49e3f63) and the 95f286d sources-sync re-touched sources/nocodb.md + sources/ragflow.md + sources/seafile.md + sources/wikijs.md + sources/openwiki-version-drift.md, while the synthesis-side write path re-touched quickstart.md + themes.md + sources/README.md + sources/index.md + sources/hackernews.md + sources/web-search.md + sources/git-repo.md; synthesis-layer impact is none because vault produced no new external evidence. The 2026-09-21T18:17Z fetch is the 37th git-repo-1 fetch of the 2026-08-07 streak + the 10th consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367, 10 calendar days of vault silence); the 1 working-tree modification at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) persists uncommitted for 8 calendar days at the 2026-09-21T18:17Z fetch without further changes; the 4 carry-forward untracked directories bump to 40/35/35/28 days at the 2026-09-21T18:17Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 2 new automated wiki commits in the 24-hour window (d5a2b15 sources-sync 2026-09-21 thirty-eighth + 5cc20ce daily update 2026-09-21) bumped wiki HEAD 95f286d → d5a2b15; the 10-dirty-file baseline (down from the prior 12-dirty-file baseline at 2026-09-20) shows the 5cc20ce daily update cycle cleared 6 files that the prior daily update had not been able to clean (index.md + sources/README.md + sources/git-repo.md + sources/openwiki-version-drift.md + themes/05-robin-research.md + themes/index.md) and the d5a2b15 sources-sync re-touched sources/nocodb.md + sources/ragflow.md + sources/seafile.md + sources/wikijs.md, while the synthesis-side write path re-touched quickstart.md + themes.md + sources/index.md + sources/hackernews.md + sources/web-search.md; synthesis-layer impact is none because vault produced no new external evidence. The 2026-09-22T18:08Z fetch is the 38th git-repo-1 fetch of the 2026-08-07 streak + the 11th consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at 09bec367, 11 calendar days of vault silence); the 1 working-tree modification at 04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md (mtime 2026-09-13 11:55:42 +0800) persists uncommitted for 9 calendar days at the 2026-09-22T18:08Z fetch without further changes; the 4 carry-forward untracked directories bump to 41/36/36/29 days at the 2026-09-22T18:08Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 2 new automated wiki commits in the 24-hour window (4ee7fc1 sources-sync 2026-09-22 thirty-ninth + 4e257c9 daily update 2026-09-22) bumped wiki HEAD d5a2b15 → 4ee7fc1; the 8-dirty-file baseline (down from the prior 10-dirty-file baseline at 2026-09-21) shows the 4e257c9 daily update cycle cleared 7 files that the prior daily update had not been able to clean (index.md + quickstart.md + sources/README.md + sources/git-repo.md + themes.md + themes/05-robin-research.md + themes/index.md) and the 4ee7fc1 sources-sync re-touched sources/nocodb.md + sources/ragflow.md + sources/seafile.md + sources/wikijs.md; synthesis-layer impact is none because vault produced no new external evidence.