298 lines
101 KiB
Markdown
298 lines
101 KiB
Markdown
---
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type: "Reference"
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title: "Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)"
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description: >
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Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested
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through the local git-repo connector. **Latest fetch (2026-09-25T18:17Z — 41st
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git-repo-1 fetch since 2026-08-07): vault HEAD unchanged at `09bec367` for the
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14th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption; wiki
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HEAD bumped `17e9fafc` → `f9bb2e5e` via 2 new automated wiki commits (`069eef3`
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daily update 2026-09-25 + `f9bb2e5` sources-sync 2026-09-25 — the **forty-second**
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consecutive sources-sync); 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md`
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(mtime 2026-09-13 11:55:42 +0800 — persists uncommitted for 12 calendar days at
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this fetch); 11-dirty-file baseline (down from 12-dirty at the 2026-09-24 fetch —
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the `069eef3` daily update cycle cleared `sources/git-repo.md` from the dirty list;
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the `f9bb2e5` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md`
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+ `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the post-sources-sync
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synthesis-side write path re-touched `index.md` + `quickstart.md` + `sources/README.md` +
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`sources/hackernews.md` + `sources/index.md` + `sources/web-search.md` + `themes.md`;
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net: −1 vs the 12-dirty baseline);
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carry-forward bump 43/38/38/31 → **44/39/39/32-day** (highest carry-forward
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durations of the 2026-08-07 streak).** Two configured repos: obsidian-vault at
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/home/ldw/workspace (main branch, HEAD `09bec367`, 2026-09-11, vault HEAD unchanged
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at `09bec367` for the 14th consecutive fetch after the Tomas 2026 + Vijakumaran
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2026 resumption; the MOC working-tree modification persists uncommitted for 12
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calendar days at this fetch); and openwiki-wiki at /home/ldw/.openwiki/wiki (main
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branch, HEAD `f9bb2e5e`, 2026-09-25, bumped from `17e9fafc` via 2 automated commits
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in the 24-hour window — `069eef3` daily update + `f9bb2e5` sources-sync forty-second).
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This page is a navigation index — content ingestion (paper deep reads, sales
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scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
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tags: [sources, git-repo, vault, wiki, manifest, 2026-09-25, 2026-09-24, 2026-09-23, 2026-09-22, 2026-09-21, 2026-09-20, 2026-09-19, 2026-09-18, 2026-09-17, 2026-09-16, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, vault-silence-broken, vault-resumed-after-11d, twenty-seventh-sources-sync, twenty-eighth-sources-sync, twenty-ninth-sources-sync, thirtieth-sources-sync, thirty-first-sources-sync, thirty-second-sources-sync, thirty-third-sources-sync, thirty-fourth-sources-sync, thirty-fifth-sources-sync, thirty-sixth-sources-sync, thirty-seventh-sources-sync, thirty-eighth-sources-sync, thirty-ninth-sources-sync, fortieth-sources-sync, forty-first-sources-sync, forty-second-sources-sync, thirty-second-git-repo-fetch, thirty-third-git-repo-fetch, thirty-fourth-git-repo-fetch, thirty-fifth-git-repo-fetch, thirty-sixth-git-repo-fetch, thirty-seventh-git-repo-fetch, thirty-eighth-git-repo-fetch, thirty-ninth-git-repo-fetch, fortieth-git-repo-fetch, forty-first-git-repo-fetch, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, wiki-2-new-commits, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-twenty-three-silent-fetches, deepread-40240593-twenty-four-silent-fetches, deepread-40240593-twenty-five-silent-fetches, deepread-40240593-twenty-six-silent-fetches, deepread-40240593-twenty-seven-silent-fetches, deepread-40240593-twenty-eight-silent-fetches, deepread-40240593-twenty-nine-silent-fetches, deepread-40240593-thirty-silent-fetches, deepread-40240593-thirty-one-silent-fetches, deepread-40240593-thirty-two-silent-fetches, vault-silent-5d, vault-silent-6d, vault-silent-7d, vault-silent-8d, vault-silent-9d, vault-silent-10d, vault-silent-11d, vault-silent-12d, vault-silent-13d, vault-silent-14d, moc-organoid-3d-culture-uncommitted-edit-4d, moc-organoid-3d-culture-uncommitted-edit-5d, moc-organoid-3d-culture-uncommitted-edit-6d, moc-organoid-3d-culture-uncommitted-edit-7d, moc-organoid-3d-culture-uncommitted-edit-8d, moc-organoid-3d-culture-uncommitted-edit-9d, moc-organoid-3d-culture-uncommitted-edit-10d, moc-organoid-3d-culture-uncommitted-edit-11d, moc-organoid-3d-culture-uncommitted-edit-12d, vault-working-tree-moc-modification-2026-09-13-persists, vault-silent-8d-consecutive-fetch, vault-silent-9d-consecutive-fetch, vault-silent-10d-consecutive-fetch, vault-silent-11d-consecutive-fetch, vault-silent-12d-consecutive-fetch, vault-silent-13d-consecutive-fetch, vault-silent-14d-consecutive-fetch, thirty-fourth-git-repo-fetch-34th, thirty-fifth-git-repo-fetch-35th, thirty-sixth-git-repo-fetch-36th, thirty-seventh-git-repo-fetch-37th, thirty-eighth-git-repo-fetch-38th, thirty-ninth-git-repo-fetch-39th, fortieth-git-repo-fetch-40th, forty-first-git-repo-fetch-41st, thirty-sixth-sources-sync-2026-09-19, thirty-seventh-sources-sync-2026-09-20, thirty-eighth-sources-sync-2026-09-21, thirty-ninth-sources-sync-2026-09-22, fortieth-sources-sync-2026-09-23, forty-first-sources-sync-2026-09-24, forty-second-sources-sync-2026-09-25, dirty-12-files-baseline-2026-09-24, dirty-11-files-baseline-2026-09-25, dirty-10-files-baseline-2026-09-23, dirty-8-files-baseline-2026-09-22, robin-8-07-added-untracked-regional-agent-files]
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timestamp: 2026-09-25T18:17:00Z
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---
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# Git repo — evidence index
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This page is the **compact source-evidence index** for the local git-repo connector, which ingests Robin's Obsidian vault (`/home/ldw/workspace`) and the local OpenWiki wiki (`/home/ldw/.openwiki/wiki`). Each ingestion run writes a JSON manifest under `~/.openwiki/connectors/git-repo/raw/`.
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## Source config
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- Connector config path: `~/.openwiki/connectors/git-repo/config.json`
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- Two configured local repos:
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- `obsidian-vault` at `/home/ldw/workspace` (branch: `main`, HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff`, 2026-09-11 — **37 commits since 2026-08-03 fetch**, +2 since 2026-09-09T18:11Z fetch; vault HEAD unchanged for the 14th consecutive git-repo-1 fetch since the 2026-09-11T18:14Z resumption)
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- `openwiki-wiki` at `/home/ldw/.openwiki/wiki` (branch: `main`, HEAD `f9bb2e5e41f54fc4bdebd8aef8feb7a6ad80185e`, 2026-09-25 — bumped from `17e9fafc9b360a2e1384515b4fcd86fcd4625877` via 2 automated commits in the 24-hour window)
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- Authentication: local path only — no remote, no credentials
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## Latest manifest
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- `~/.openwiki/connectors/git-repo/raw/2026-09-25T18-17-10-153Z/manifest.json` (generated 2026-09-25T18:17Z — **41st git-repo-1 fetch since 2026-08-07**)
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- Vault HEAD: `09bec36702cdbd8ef1d2644919ca337248ae6bff` (**unchanged at `09bec367` for the 14th consecutive fetch** after the 2026-09-11T18:14Z bump from `391e4713`; **14 calendar days of vault silence** since the 2026-09-11 resumption)
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- Wiki HEAD: `f9bb2e5e41f54fc4bdebd8aef8feb7a6ad80185e` (bumped from `17e9fafc9b360a2e1384515b4fcd86fcd4625877` via 2 automated commits in the 24-hour window)
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- **0 new vault commits** in the 24-hour window + **1 working-tree modification** at `M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"` (mtime 2026-09-13 11:55:42 +0800; Robin actively editing MOC index file but has not yet committed — the modification now persists uncommitted for **12 calendar days** at this fetch)
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- **2 new automated wiki commits** in the 24-hour window (`f9bb2e5` sources-sync 2026-09-25 — the **forty-second** consecutive sources-sync — + `069eef3` daily update 2026-09-25)
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- **11 uncommitted wiki files** in working tree per the manifest `changedFiles` list (down from the 12-dirty baseline at the 2026-09-24T18:07Z fetch — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/README.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`; the `069eef3` daily update cleared `sources/git-repo.md` from the dirty list; the `f9bb2e5` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the post-sources-sync synthesis-side write path re-touched `index.md` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/index.md` + `sources/web-search.md` + `themes.md`; the CLI metadata cycle re-touched `.last-update.json`; net: −1 vs the 12-dirty baseline)
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- **Carry-forward untracked-file bumps**: `Review/zhou2023_computer_vision_microfluidics.md` 43 → **44-day** (42 → **43 fetches silent**), `celvivo_commercial/` + `templates/` 38 → **39-day**, `deepread_40240593/` 31 → **32-day** (mtime unchanged across **31 consecutive silent fetches** since creation)
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## Carry-forward untracked directories
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| Directory / file | Carry-forward | Fetches silent | Status |
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| --- | ---: | ---: | --- |
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| `Review/zhou2023_computer_vision_microfluidics.md` | **44-day** | 43 | stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch) |
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| `celvivo_commercial/` | **39-day** | 40 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
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| `templates/` | **39-day** | 40 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
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| `deepread_40240593/` | **32-day** | 31 | working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 31 consecutive silent fetches since creation) |
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## Robin 8-07 added — untracked regional agent files (context only)
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The 8 untracked regional agent files Robin added on 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") remain in the vault working tree as uncommitted artifacts, with no mtime change observed since the 2026-08-07 baseline:
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- `02-Clients/Agents/全国经销商地图-2026-0807.md`
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- `02-Clients/Agents/华东-2026-0807.md`
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- `02-Clients/Agents/华北-2026-0807.md`
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- `02-Clients/Agents/华南-2026-0807.md`
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- `02-Clients/Agents/山东-2026-0807.md`
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- `02-Clients/Agents/湖北-2026-0807.md`
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- `02-Clients/Agents/西北-2026-0807.md`
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- `02-Clients/Agents/西南-2026-0807.md`
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These files are documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md) (with privacy rules per [`/sources/agents.md`](/sources/agents.md)) — no fresh synthesis update needed at this fetch.
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## Recent commits — vault (last 7)
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The 5 most recent vault commits are the new 2 (Tomas 2026 + Vijakumaran 2026) on top of the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR burst. **Vault HEAD bumped `391e4713` → `09bec367`** — vault silence streak BROKEN after 11 calendar days:
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1. `09bec367` 2026-09-11 — `literature: 精读 NocoDB Id=3029 Air-liquid interface-centered oxygen engineering in human br (飞轮 v4 自动 sink)` (brain-organoid ALI oxygen engineering — first paper routed through the **v4 Flywheel auto-sink pipeline**; new file at `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md`)
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2. `1fd63019` 2026-09-10 — `feat(literature): Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read` (Western University; new file at `04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md`)
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3. `391e4713` 2026-08-31 — deep-read: Yan 2024 Cell Reports TMEM106B SARS-CoV-2 ACE2-independent brain organoids (CelVivo)
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4. `4fca0123` 2026-08-31 — deep-read: Miao 2025 Cell vascularized lung/gut organoids (CelVivo ClinoReactor)
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5. `fad7e21e` 2026-08-31 — deep-read: Nguyen 2024 npj Viruses JEV G4 2022 Australia brain organoids (CelVivo)
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6. `030f31ed` 2026-08-31 — deep-read: Aiello 2025 EMBO reports reproducible brain organoids (CelVivo ClinoReactor)
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7. `eb24ab72` 2026-08-31 — deep-read: Stewart 2023 Front Microbiol BA.5/XBB neurotropic brain organoids (CelVivo)
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## Recent commits — wiki (last 8)
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1. `f9bb2e5` 2026-09-25 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-25, **forty-second** consecutive sources-sync — the per `git show --stat f9bb2e5` commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files)
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2. `069eef3` 2026-09-25 — chore: daily update 2026-09-25 (per `git show --stat 069eef3` the commit re-touched `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — the standard daily-update cycle)
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3. `17e9faf` 2026-09-24 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-24, **forty-first** consecutive sources-sync — the per `git show --stat 17e9faf` commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files)
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4. `dc1a9fb` 2026-09-24 — chore: daily update 2026-09-24 (per `git show --stat dc1a9fb` the commit re-touched `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes/05-robin-research.md` + `themes/index.md` — the standard daily-update cycle)
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5. `6aa1db2` 2026-09-23 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-23, **fortieth** consecutive sources-sync — the per `git show --stat 6aa1db2` commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files)
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6. `4c145e2` 2026-09-23 — chore: daily update 2026-09-23 (per `git show --stat 4c145e2` the commit re-touched `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes/05-robin-research.md` + `themes/index.md` — the standard daily-update cycle)
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7. `4ee7fc1` 2026-09-22 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-22, **thirty-ninth** consecutive sources-sync — the per `git show --stat 4ee7fc1` commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files)
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8. `4e257c9` 2026-09-22 — chore: daily update 2026-09-22 (per `git show --stat 4e257c9` the commit re-touched `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — the standard daily-update cycle that cleared 7 files from the prior 10-dirty baseline)
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9. `d5a2b15` 2026-09-21 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-21, **thirty-eighth** consecutive sources-sync — the per `git show --stat d5a2b15` commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files)
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10. `5cc20ce` 2026-09-21 — chore: daily update 2026-09-21 (per `git show --stat 5cc20ce` the commit re-touched `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/openwiki-version-drift.md` + `sources/web-search.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — the standard daily-update cycle that cleared 6 files from the prior 12-dirty baseline)
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11. `95f286d` 2026-09-20 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-20, **thirty-seventh** consecutive sources-sync — the per `git show --stat 95f286d` commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files)
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12. `49e3f63` 2026-09-20 — chore: daily update 2026-09-20 (per `git show --stat 49e3f63` the commit re-touched `.last-update.json` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/web-search.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` + `quickstart.md` — the standard daily-update cycle)
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13. `6e2a733` 2026-09-19 — chore: daily update 2026-09-19 (per `git show --stat 6e2a733` the commit re-touched `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — the standard daily-update cycle; the commit cleared the prior 11-dirty-file baseline down to 5-dirty)
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14. `1ba0fb1` 2026-09-19 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-19, **thirty-sixth** consecutive sources-sync — the per `git show --stat 1ba0fb1` commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files)
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15. `c6e81a5` 2026-09-18 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-18, **thirty-fifth** consecutive sources-sync)
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16. `46a508d` 2026-09-18 — chore: daily update 2026-09-18 (per `git show --stat 46a508d` the commit re-touched `.last-update.json` + `index.md` + `quickstart.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` — the standard daily-update cycle)
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17. `307e038` 2026-09-17 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-17, **thirty-fourth** consecutive sources-sync)
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18. `3d95e56` 2026-09-17 — chore: daily update 2026-09-17 (per `git show --stat 3d95e56` the commit re-touched `index.md` + `quickstart.md` + `themes.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes/05-robin-research.md` + `themes/index.md` + the `.last-update.json` metadata file — the standard daily-update cycle)
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19. `ac46732` 2026-09-16 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-16, **thirty-third** consecutive sources-sync)
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20. `73dae5e` 2026-09-16 — chore: daily update 2026-09-16 (per `git show --stat 73dae5e` the commit re-touched the same source-sync files)
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21. `f5465f9` 2026-09-15 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-15, **thirty-second** consecutive sources-sync)
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## Synthesis-policy — this run (2026-09-25T18:17Z)
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- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **14th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **14 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-24T18:07Z fetch recorded 13 calendar days; +1 calendar day from 2026-09-24 → 2026-09-25). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 12 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-24T18:07Z → 2026-09-25T18:17Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md). The new 2 untracked vault files noted at the 2026-09-24T18:07Z fetch (`04-Literature/Deep-Reads/Brain/2026-08-06_Parfitt_GM_et_al_NatCommun_2024_DJ1_LOF_midbrain_organoid_PD.md` 15972 bytes + `04-Literature/Deep-Reads/MOCs/papamichail-2025-organoids-on-chip.md` 13143 bytes) continue to carry forward unchanged from the 2026-09-24T18:07Z fetch — both pre-date the 2026-09-24 fetch and have been in the vault working tree since 2026-08-06 / 2026-09-13 respectively without being promoted to commits.
|
||
- **Wiki delta: automated maintenance only** (1 daily update + 1 sources-sync). The 2 new wiki commits in the 24-hour window are routine: `069eef3` daily update 2026-09-25 + `f9bb2e5` sources-sync 2026-09-25 — the **forty-second** consecutive sources-sync (continuing the count-data wipe pattern that started at the 2026-08-15 `2507925` commit). The wiki HEAD bump `17e9fafc` → `f9bb2e5e` covers 1 calendar day.
|
||
- **Dirty-file baseline change**: 12-dirty baseline (at 2026-09-24T18:07Z) → **11-dirty baseline** (at 2026-09-25T18:17Z). The `069eef3` daily update cleared `sources/git-repo.md` from the dirty list (the standard 15-file cycle per `git show --stat 069eef3` re-touched the same synthesis-layer files as the prior daily update plus `themes.md`). The `f9bb2e5` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the post-sources-sync synthesis-side write path re-touched `index.md` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/index.md` + `sources/web-search.md` + `themes.md`; the CLI metadata cycle re-touched `.last-update.json`. The 11-dirty-file list at 2026-09-25T18:17Z: `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/README.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`. (Note: the standard `069eef3` daily update cycle cleared the prior 12-dirty baseline down to a smaller count, but the `f9bb2e5` sources-sync that landed after the daily update re-dirtied the 4 source-sync files plus 7 synthesis-side files re-touched by the post-commit write path = net −1 vs the 12-dirty baseline because the daily update cleared `sources/git-repo.md` while the sources-sync did not re-touch it.)
|
||
- **Carry-forward bump** to **44/39/39/32-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak, +1 day from the 2026-09-24 fetch's 43/38/38/31-day): `Review/zhou2023_computer_vision_microfluidics.md` 43 → **44-day** (42 → **43 fetches silent**), `celvivo_commercial/` + `templates/` 38 → **39-day** (39 → **40 fetches silent** each), `deepread_40240593/` 31 → **32-day** (30 → **31 consecutive silent fetches** since creation; mtime unchanged at 2026-08-24 16:31 +0800).
|
||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 12 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-25T18:17Z)" paragraph + the description frontmatter mentions the 2026-09-25T18:17Z git-repo-1 fetch + the **41st git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-14th-consecutive-fetch** event + the 2 new wiki commits (41st/42nd sources-sync sequence: `069eef3` daily update + `f9bb2e5` sources-sync forty-second) + the 44/39/39/32-day carry-forward bump + the 11-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 12 calendar days + the Robin 8-07 added untracked regional agent files
|
||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-25T18:17Z fetch; tags refreshed to add `2026-09-25`, `vault-silent-14d-consecutive-fetch`, `forty-second-sources-sync-2026-09-25`, `forty-first-git-repo-fetch-41st`, `wiki-2-new-commits`, `moc-organoid-3d-culture-uncommitted-edit-12d`, `deepread-40240593-thirty-two-silent-fetches`, `dirty-11-files-baseline-2026-09-25`, `robin-8-07-added-untracked-regional-agent-files`; timestamp refreshed to `2026-09-25T18:17:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 44/39/39/32-day; Recent-commits-wiki table refreshed (2 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-25T18:17Z fetch + the vault HEAD unchanged for the 14th consecutive fetch + the 2 new wiki commits (41st/42nd sources-sync sequence) + the 44/39/39/32-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted for 12 calendar days; 04-Literature/Deep-Reads/ breakdown table refreshed with the 44/39/39/32-day carry-forward bump
|
||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-25T18:17Z fetch + the vault HEAD unchanged at `09bec367` for the 14th consecutive fetch + the wiki HEAD `f9bb2e5e` + the 44/39/39/32-day carry-forward bump + the **41st git-repo-1 fetch** of the 2026-08-07 streak + the 11-dirty-file baseline
|
||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-25T18:17Z fetch + the **forty-second** consecutive sources-sync + the 11-dirty-file baseline + the 44/39/39/32-day carry-forward bump
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-25T18:17Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
||
## Synthesis-policy — this run (2026-09-24T18:07Z)
|
||
|
||
- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **13th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **13 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-23T18:10Z fetch recorded 12 calendar days; +1 calendar day from 2026-09-23 → 2026-09-24). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 11 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-23T18:10Z → 2026-09-24T18:07Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md).
|
||
- **Wiki delta: automated maintenance only** (1 daily update + 1 sources-sync). The 2 new wiki commits in the 24-hour window are routine: `dc1a9fb` daily update 2026-09-24 + `17e9faf` sources-sync 2026-09-24 — the **forty-first** consecutive sources-sync (continuing the count-data wipe pattern that started at the 2026-08-15 `2507925` commit). The wiki HEAD bump `6aa1db2` → `17e9faf` covers 1 calendar day.
|
||
- **Dirty-file baseline change**: 10-dirty baseline (at 2026-09-23T18:10Z) → **12-dirty baseline** (at 2026-09-24T18:07Z). The `17e9faf` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the post-sources-sync synthesis-side write path re-touched `index.md` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/index.md` + `sources/web-search.md` + `themes.md`; the CLI metadata cycle re-touched `.last-update.json`. The 12-dirty-file list at 2026-09-24T18:07Z: `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/README.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`. (Note: the standard `dc1a9fb` daily update cycle cleared the prior 10-dirty baseline down to a smaller count, but the `17e9faf` sources-sync that landed after the daily update re-dirtied the 4 source-sync files plus 7 synthesis-side files re-touched by the post-commit write path = net +2 vs the 10-dirty baseline.)
|
||
- **Carry-forward bump** to **43/38/38/31-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak, +1 day from the 2026-09-23 fetch's 42/37/37/30-day): `Review/zhou2023_computer_vision_microfluidics.md` 42 → **43-day** (40 → **41 fetches silent**), `celvivo_commercial/` + `templates/` 37 → **38-day** (37 → **38 fetches silent** each), `deepread_40240593/` 30 → **31-day** (29 → **30 consecutive silent fetches** since creation; mtime unchanged at 2026-08-24 16:31 +0800).
|
||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 11 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-24T18:07Z)" paragraph + the description frontmatter mentions the 2026-09-24T18:07Z git-repo-1 fetch + the **40th git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-13th-consecutive-fetch** event + the 2 new wiki commits (40th/41st sources-sync sequence: `dc1a9fb` daily update + `17e9faf` sources-sync forty-first) + the 43/38/38/31-day carry-forward bump + the 12-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 11 calendar days + the Robin 8-07 added untracked regional agent files
|
||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-24T18:07Z fetch; tags refreshed to add `2026-09-24`, `vault-silent-13d-consecutive-fetch`, `forty-first-sources-sync-2026-09-24`, `fortieth-git-repo-fetch-40th`, `wiki-2-new-commits`, `moc-organoid-3d-culture-uncommitted-edit-11d`, `deepread-40240593-thirty-one-silent-fetches`, `dirty-12-files-baseline-2026-09-24`, `robin-8-07-added-untracked-regional-agent-files`; timestamp refreshed to `2026-09-24T18:07:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 43/38/38/31-day; Recent-commits-wiki table refreshed (2 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-24T18:07Z fetch + the vault HEAD unchanged for the 13th consecutive fetch + the 2 new wiki commits (40th/41st sources-sync sequence) + the 43/38/38/31-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted for 11 calendar days; 04-Literature/Deep-Reads/ breakdown table refreshed with the 43/38/38/31-day carry-forward bump
|
||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-24T18:07Z fetch + the vault HEAD unchanged at `09bec367` for the 13th consecutive fetch + the wiki HEAD `17e9fafc` + the 43/38/38/31-day carry-forward bump + the **40th git-repo-1 fetch** of the 2026-08-07 streak + the 12-dirty-file baseline
|
||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-24T18:07Z fetch + the **forty-first** consecutive sources-sync + the 12-dirty-file baseline + the 43/38/38/31-day carry-forward bump
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-24T18:07Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
||
## Synthesis-policy — this run (2026-09-23T18:10Z)
|
||
|
||
- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **12th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **12 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-22T18:08Z fetch recorded 11 calendar days; +1 calendar day from 2026-09-22 → 2026-09-23). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 10 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-22T18:08Z → 2026-09-23T18:10Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md).
|
||
- **Wiki delta: automated maintenance only** (1 daily update + 1 sources-sync). The 2 new wiki commits in the 24-hour window are routine: `4c145e2` daily update 2026-09-23 + `6aa1db2` sources-sync 2026-09-23 — the **fortieth** consecutive sources-sync (continuing the count-data wipe pattern that started at the 2026-08-15 `2507925` commit). The wiki HEAD bump `4ee7fc1` → `6aa1db2` covers 1 calendar day.
|
||
- **Dirty-file baseline change**: 8-dirty baseline (at 2026-09-22T18:08Z) → **10-dirty baseline** (at 2026-09-23T18:10Z). The `6aa1db2` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the post-sources-sync synthesis-side write path re-touched `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/web-search.md`; the CLI metadata cycle re-touched `.last-update.json`; the sources index synthesis re-touched `sources/index.md`. The 10-dirty-file list at 2026-09-23T18:10Z: `M .last-update.json` + `M quickstart.md` + `M sources/README.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md`. (Note: the standard `4c145e2` daily update cycle cleared the prior 8-dirty baseline down to a smaller count, but the `6aa1db2` sources-sync that landed after the daily update re-dirtied the 4 source-sync files plus 4 synthesis-side files re-touched by the post-commit write path = net +2 vs the 8-dirty baseline.)
|
||
- **Carry-forward bump** to **42/37/37/30-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak, +1 day from the 2026-09-22 fetch's 41/36/36/29-day): `Review/zhou2023_computer_vision_microfluidics.md` 41 → **42-day** (39 → **40 fetches silent**), `celvivo_commercial/` + `templates/` 36 → **37-day** (36 → **37 fetches silent** each), `deepread_40240593/` 29 → **30-day** (28 → **29 consecutive silent fetches** since creation; mtime unchanged at 2026-08-24 16:31 +0800).
|
||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 10 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-23T18:10Z)" paragraph + the description frontmatter mentions the 2026-09-23T18:10Z git-repo-1 fetch + the **39th git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-12th-consecutive-fetch** event + the 2 new wiki commits (39th/40th sources-sync sequence: `4c145e2` daily update + `6aa1db2` sources-sync fortieth) + the 42/37/37/30-day carry-forward bump + the 10-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 10 calendar days + the Robin 8-07 added untracked regional agent files
|
||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-23T18:10Z fetch; tags refreshed to add `2026-09-23`, `vault-silent-12d-consecutive-fetch`, `fortieth-sources-sync-2026-09-23`, `thirty-ninth-git-repo-fetch-39th`, `wiki-2-new-commits`, `moc-organoid-3d-culture-uncommitted-edit-10d`, `deepread-40240593-thirty-silent-fetches`, `dirty-10-files-baseline-2026-09-23`, `robin-8-07-added-untracked-regional-agent-files`; timestamp refreshed to `2026-09-23T18:10:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 42/37/37/30-day; Recent-commits-wiki table refreshed (2 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-23T18:10Z fetch + the vault HEAD unchanged for the 12th consecutive fetch + the 2 new wiki commits (39th/40th sources-sync sequence) + the 42/37/37/30-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted for 10 calendar days; 04-Literature/Deep-Reads/ breakdown table refreshed with the 42/37/37/30-day carry-forward bump
|
||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-23T18:10Z fetch + the vault HEAD unchanged at `09bec367` for the 12th consecutive fetch + the wiki HEAD `6aa1db2` + the 42/37/37/30-day carry-forward bump + the **39th git-repo-1 fetch** of the 2026-08-07 streak + the 10-dirty-file baseline
|
||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-23T18:10Z fetch + the **fortieth** consecutive sources-sync + the 10-dirty-file baseline + the 42/37/37/30-day carry-forward bump
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-23T18:10Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
||
## Synthesis-policy — this run (2026-09-22T18:08Z)
|
||
|
||
- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **11th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **11 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-21T18:17Z fetch recorded 10 calendar days; +1 calendar day from 2026-09-21 → 2026-09-22). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 9 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-21T18:17Z → 2026-09-22T18:08Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md).
|
||
- **Wiki delta: automated maintenance only** (1 daily update + 1 sources-sync). The 2 new wiki commits in the 24-hour window are routine: `4e257c9` daily update 2026-09-22 + `4ee7fc1` sources-sync 2026-09-22 — the **thirty-ninth** consecutive sources-sync (continuing the count-data wipe pattern that started at the 2026-08-15 `2507925` commit). The wiki HEAD bump `d5a2b15` → `4ee7fc1` covers 1 calendar day.
|
||
- **Dirty-file baseline change**: 10-dirty baseline (at 2026-09-21T18:17Z) → **8-dirty baseline** (at 2026-09-22T18:08Z). The `4e257c9` daily update commit cleared `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` that the prior daily update had not been able to clean (those 7 files were in the 10-dirty list at 2026-09-21 because the `d5a2b15` sources-sync re-touched them or because the synthesis-side write path re-touched them after the daily update committed). The `4ee7fc1` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the synthesis-side write path did not re-touch any synthesis-layer files at this fetch (the post-commit dirty list is just the sources-sync + the CLI metadata cycle `.last-update.json` + the synthesis-layer pages that the sources-sync itself touches). The 8-dirty-file list at 2026-09-22T18:08Z: `M .last-update.json` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md`.
|
||
- **Carry-forward bump** to **41/36/36/29-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak, +1 day from the 2026-09-21 fetch's 40/35/35/28-day): `Review/zhou2023_computer_vision_microfluidics.md` 40 → **41-day** (38 → **39 fetches silent**), `celvivo_commercial/` + `templates/` 35 → **36-day** (35 → **36 fetches silent** each), `deepread_40240593/` 28 → **29-day** (27 → **28 consecutive silent fetches** since creation; mtime unchanged at 2026-08-24 16:31 +0800).
|
||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 9 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-22T18:08Z)" paragraph + the description frontmatter mentions the 2026-09-22T18:08Z git-repo-1 fetch + the **38th git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-11th-consecutive-fetch** event + the 2 new wiki commits (38th/39th sources-sync sequence: `4e257c9` daily update + `4ee7fc1` sources-sync thirty-ninth) + the 41/36/36/29-day carry-forward bump + the 8-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 9 calendar days + the Robin 8-07 added untracked regional agent files
|
||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-22T18:08Z fetch; tags refreshed to add `2026-09-22`, `vault-silent-11d-consecutive-fetch`, `thirty-ninth-sources-sync-2026-09-22`, `thirty-eighth-git-repo-fetch-38th`, `wiki-2-new-commits`, `moc-organoid-3d-culture-uncommitted-edit-9d`, `deepread-40240593-twenty-nine-silent-fetches`, `dirty-8-files-baseline-2026-09-22`, `robin-8-07-added-untracked-regional-agent-files`; timestamp refreshed to `2026-09-22T18:08:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 41/36/36/29-day; Recent-commits-wiki table refreshed (2 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-22T18:08Z fetch + the vault HEAD unchanged for the 11th consecutive fetch + the 2 new wiki commits (38th/39th sources-sync sequence) + the 41/36/36/29-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted for 9 calendar days; 04-Literature/Deep-Reads/ breakdown table refreshed with the 41/36/36/29-day carry-forward bump
|
||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-22T18:08Z fetch + the vault HEAD unchanged at `09bec367` for the 11th consecutive fetch + the wiki HEAD `4ee7fc1` + the 41/36/36/29-day carry-forward bump + the **38th git-repo-1 fetch** of the 2026-08-07 streak + the 8-dirty-file baseline
|
||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-22T18:08Z fetch + the **thirty-ninth** consecutive sources-sync + the 8-dirty-file baseline + the 41/36/36/29-day carry-forward bump
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-22T18:08Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
||
## Synthesis-policy — this run (2026-09-21T18:17Z)
|
||
|
||
- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **10th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **10 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-20T18:07Z fetch recorded 9 calendar days; +1 calendar day from 2026-09-20 → 2026-09-21). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 8 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-20T18:07Z → 2026-09-21T18:17Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md).
|
||
- **Wiki delta: automated maintenance only** (1 daily update + 1 sources-sync). The 2 new wiki commits in the 24-hour window are routine: `5cc20ce` daily update 2026-09-21 + `d5a2b15` sources-sync 2026-09-21 — the **thirty-eighth** consecutive sources-sync (continuing the count-data wipe pattern that started at the 2026-08-15 `2507925` commit). The wiki HEAD bump `95f286d` → `d5a2b15` covers 1 calendar day.
|
||
- **Dirty-file baseline change**: 12-dirty baseline (at 2026-09-20T18:07Z) → **10-dirty baseline** (at 2026-09-21T18:17Z). The `5cc20ce` daily update commit cleared `index.md` + `sources/README.md` + `sources/git-repo.md` + `sources/openwiki-version-drift.md` + `themes/05-robin-research.md` + `themes/index.md` that the prior daily update had not been able to clean (those 6 files were in the 12-dirty list at 2026-09-20 because the `95f286d` sources-sync re-touched them or because the synthesis-side write path re-touched them after the daily update committed). The `d5a2b15` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the synthesis-side write path re-touched `quickstart.md` + `themes.md` + `sources/index.md` + `sources/hackernews.md` + `sources/web-search.md`. The 10-dirty-file list at 2026-09-21T18:17Z: `M .last-update.json` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`.
|
||
- **Carry-forward bump** to **40/35/35/28-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak, +1 day from the 2026-09-20 fetch's 39/34/34/27-day): `Review/zhou2023_computer_vision_microfluidics.md` 39 → **40-day** (37 → **38 fetches silent**), `celvivo_commercial/` + `templates/` 34 → **35-day** (34 → **35 fetches silent** each), `deepread_40240593/` 27 → **28-day** (26 → **27 consecutive silent fetches** since creation; mtime unchanged at 2026-08-24 16:31 +0800).
|
||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 8 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-21T18:17Z)" paragraph + the description frontmatter mentions the 2026-09-21T18:17Z git-repo-1 fetch + the **37th git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-10th-consecutive-fetch** event + the 2 new wiki commits (37th/38th sources-sync sequence: `5cc20ce` daily update + `d5a2b15` sources-sync thirty-eighth) + the 40/35/35/28-day carry-forward bump + the 10-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 8 calendar days + the Robin 8-07 added untracked regional agent files
|
||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-21T18:17Z fetch; tags refreshed to add `2026-09-21`, `vault-silent-10d-consecutive-fetch`, `thirty-eighth-sources-sync-2026-09-21`, `thirty-seventh-git-repo-fetch-37th`, `wiki-2-new-commits`, `moc-organoid-3d-culture-uncommitted-edit-8d`, `deepread-40240593-twenty-eight-silent-fetches`, `robin-8-07-added-untracked-regional-agent-files`; timestamp refreshed to `2026-09-21T18:17:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 40/35/35/28-day; Recent-commits-wiki table refreshed (2 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-21T18:17Z fetch + the vault HEAD unchanged for the 10th consecutive fetch + the 2 new wiki commits (37th/38th sources-sync sequence) + the 40/35/35/28-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted for 8 calendar days; 04-Literature/Deep-Reads/ breakdown table refreshed with the 40/35/35/28-day carry-forward bump
|
||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-21T18:17Z fetch + the vault HEAD unchanged at `09bec367` for the 10th consecutive fetch + the wiki HEAD `d5a2b15` + the 40/35/35/28-day carry-forward bump + the **37th git-repo-1 fetch** of the 2026-08-07 streak + the 10-dirty-file baseline
|
||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-21T18:17Z fetch + the **thirty-eighth** consecutive sources-sync + the 10-dirty-file baseline + the 40/35/35/28-day carry-forward bump
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-21T18:17Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
||
## Synthesis-policy — this run (2026-09-20T18:07Z)
|
||
|
||
- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **9th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **9 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-19T18:04Z fetch recorded 8 calendar days; +1 calendar day from 2026-09-19 → 2026-09-20). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 7 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-19T18:04Z → 2026-09-20T18:07Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md).
|
||
- **Wiki delta: automated maintenance only** (1 daily update + 1 sources-sync). The 2 new wiki commits in the 24-hour window are routine: `49e3f63` daily update 2026-09-20 + `95f286d` sources-sync 2026-09-20 — the **thirty-seventh** consecutive sources-sync (continuing the count-data wipe pattern that started at the 2026-08-15 `2507925` commit). The wiki HEAD bump `6e2a733` → `95f286d` covers 1 calendar day.
|
||
- **Dirty-file baseline change**: 5-dirty baseline (at 2026-09-19T18:04Z) → **12-dirty baseline** (at 2026-09-20T18:07Z). The `49e3f63` daily update re-touched the standard 10-file cycle (`.last-update.json` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/web-search.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` + `quickstart.md`); the `95f286d` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the CLI metadata cycle re-touched `sources/openwiki-version-drift.md` — net effect: the 4 source-sync files were re-dirtied by the sources-sync that landed after the daily update cleared them, +7 vs the 5-dirty baseline. The 12-dirty-file list at 2026-09-20T18:07Z: `M .last-update.json` + `M quickstart.md` + `M sources/README.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`.
|
||
- **Carry-forward bump** to **39/34/34/27-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak, +1 day from the 2026-09-19 fetch's 38/33/33/26-day): `Review/zhou2023_computer_vision_microfluidics.md` 38 → **39-day** (36 → **37 fetches silent**), `celvivo_commercial/` + `templates/` 33 → **34-day** (33 → **34 fetches silent** each), `deepread_40240593/` 26 → **27-day** (25 → **26 consecutive silent fetches** since creation; mtime unchanged at 2026-08-24 16:31 +0800).
|
||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 7 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-20T18:07Z)" paragraph + the description frontmatter mentions the 2026-09-20T18:07Z git-repo-1 fetch + the **36th git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-9th-consecutive-fetch** event + the 2 new wiki commits (36th/37th sources-sync sequence: `49e3f63` daily update + `95f286d` sources-sync thirty-seventh) + the 39/34/34/27-day carry-forward bump + the 12-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 7 calendar days + the Robin 8-07 added untracked regional agent files
|
||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-20T18:07Z fetch; tags refreshed to add `2026-09-20`, `vault-silent-9d-consecutive-fetch`, `thirty-seventh-sources-sync-2026-09-20`, `thirty-sixth-git-repo-fetch-36th`, `wiki-2-new-commits`, `moc-organoid-3d-culture-uncommitted-edit-7d`, `deepread-40240593-twenty-seven-silent-fetches`, `robin-8-07-added-untracked-regional-agent-files`; timestamp refreshed to `2026-09-20T18:07:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 39/34/34/27-day; Recent-commits-wiki table refreshed (2 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-20T18:07Z fetch + the vault HEAD unchanged for the 9th consecutive fetch + the 2 new wiki commits (36th/37th sources-sync sequence) + the 39/34/34/27-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted for 7 calendar days; 04-Literature/Deep-Reads/ breakdown table refreshed with the 39/34/34/27-day carry-forward bump
|
||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-20T18:07Z fetch + the vault HEAD unchanged at `09bec367` for the 9th consecutive fetch + the wiki HEAD `95f286d` + the 39/34/34/27-day carry-forward bump + the **36th git-repo-1 fetch** of the 2026-08-07 streak + the 12-dirty-file baseline
|
||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-20T18:07Z fetch + the **thirty-seventh** consecutive sources-sync + the 12-dirty-file baseline + the 39/34/34/27-day carry-forward bump
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-20T18:07Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
||
## Synthesis-policy — this run (2026-09-19T18:04Z)
|
||
|
||
- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **8th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **8 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-18T18:15Z fetch recorded 7 calendar days; +1 calendar day from 2026-09-18 → 2026-09-19). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 6 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-18T18:15Z → 2026-09-19T18:04Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md).
|
||
- **Wiki delta: automated maintenance only** (1 daily update + 1 sources-sync). The 2 new wiki commits in the 24-hour window are routine: `1ba0fb1` sources-sync 2026-09-19 — the **thirty-sixth** consecutive sources-sync — + `6e2a733` daily update 2026-09-19 (continuing the count-data wipe pattern that started at the 2026-08-15 `2507925` commit). The wiki HEAD bump `c6e81a5` → `6e2a733` covers 1 calendar day. The `6e2a733` daily update commit re-touched 15 files (the standard cycle) including `themes/05-robin-research.md` + `sources/git-repo.md` + all 4 source-sync files; the `1ba0fb1` sources-sync re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`.
|
||
- **Dirty-file baseline change**: 11-dirty baseline (at 2026-09-18T18:15Z) → **5-dirty baseline** (at 2026-09-19T18:04Z). The `6e2a733` daily update commit cleared the prior 11-dirty-file baseline — `index.md` + `quickstart.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` + `sources/README.md` + `themes/05-robin-research.md` + `themes/index.md` + `sources/git-repo.md` were all staged+committed — then 5 files were re-touched in the working tree by the post-commit synthesis pipeline (likely `.last-update.json` from the CLI metadata cycle + `sources/hackernews.md` from the hackernews-1 connector daily update + `sources/web-search.md` from the web-search connector daily update + `themes.md` from the synthesis layer + `sources/index.md` from the sources index synthesis). The 5-dirty-file list at 2026-09-19T18:04Z: `M .last-update.json` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/web-search.md` + `M themes.md`.
|
||
- **Carry-forward bump** to **38/33/33/26-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak, +1 day from the 2026-09-18 fetch's 37/32/32/25-day): `Review/zhou2023_computer_vision_microfluidics.md` 37 → **38-day** (35 → **36 fetches silent**), `celvivo_commercial/` + `templates/` 32 → **33-day** (32 → **33 fetches silent** each), `deepread_40240593/` 25 → **26-day** (24 → **25 consecutive silent fetches** since creation; mtime unchanged at 2026-08-24 16:31 +0800).
|
||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 6 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-19T18:04Z)" paragraph + the description frontmatter mentions the 2026-09-19T18:04Z git-repo-1 fetch + the **35th git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-8th-consecutive-fetch** event + the 2 new wiki commits (35th/36th sources-sync sequence: `1ba0fb1` sources-sync thirty-sixth + `6e2a733` daily update) + the 38/33/33/26-day carry-forward bump + the 5-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 6 calendar days + the Robin 8-07 added untracked regional agent files
|
||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-19T18:04Z fetch; tags refreshed to add `2026-09-19`, `vault-silent-8d-consecutive-fetch`, `thirty-sixth-sources-sync-2026-09-19`, `thirty-fifth-git-repo-fetch-35th`, `wiki-2-new-commits`, `moc-organoid-3d-culture-uncommitted-edit-6d`, `deepread-40240593-twenty-six-silent-fetches`, `robin-8-07-added-untracked-regional-agent-files`; timestamp refreshed to `2026-09-19T18:04:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 38/33/33/26-day; Recent-commits-wiki table refreshed (2 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-19T18:04Z fetch + the vault HEAD unchanged for the 8th consecutive fetch + the 2 new wiki commits (35th/36th sources-sync sequence) + the 38/33/33/26-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted for 6 calendar days; 04-Literature/Deep-Reads/ breakdown table refreshed with the 38/33/33/26-day carry-forward bump
|
||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-19T18:04Z fetch + the vault HEAD unchanged at `09bec367` for the 8th consecutive fetch + the wiki HEAD `6e2a733` + the 38/33/33/26-day carry-forward bump + the **35th git-repo-1 fetch** of the 2026-08-07 streak + the 5-dirty-file baseline
|
||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-19T18:04Z fetch + the **thirty-sixth** consecutive sources-sync + the 5-dirty-file baseline + the 38/33/33/26-day carry-forward bump
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-19T18:04Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
||
## Synthesis-policy — this run (2026-09-18T18:15Z)
|
||
|
||
- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **7th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **7 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-17T18:22Z fetch recorded 6 calendar days; +1 calendar day from 2026-09-17 → 2026-09-18). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 5 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-17T18:22Z → 2026-09-18T18:15Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md).
|
||
- **Wiki delta: automated maintenance only** (1 daily update + 1 sources-sync). The 2 new wiki commits in the 24-hour window are routine: `46a508d` daily update 2026-09-18 + `c6e81a5` sources-sync 2026-09-18 — the **thirty-fifth** consecutive sources-sync (continuing the count-data wipe pattern that started at the 2026-08-15 `2507925` commit). The wiki HEAD bump `307e038` → `c6e81a5` covers 1 calendar day.
|
||
- **Dirty-file baseline change**: 10-dirty baseline (at 2026-09-17T18:22Z) → **11-dirty baseline** (at 2026-09-18T18:15Z). The `46a508d` daily update re-touched the same synthesis-layer files; `sources/index.md` was newly re-touched this run (not in the 10-dirty list at 2026-09-17 — likely a re-touch from the synthesis-side write path); the `c6e81a5` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); `sources/README.md` was cleared from the dirty list (it had been in the 10-dirty list at 2026-09-17 because the daily update at that fetch re-touched it). The 11-dirty-file list at 2026-09-18T18:15Z: `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/literature.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`.
|
||
- **Carry-forward bump** to **37/32/32/25-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak, +1 day from the 2026-09-17 fetch's 36/31/31/24-day): `Review/zhou2023_computer_vision_microfluidics.md` 36 → **37-day** (34 → **35 fetches silent**), `celvivo_commercial/` + `templates/` 31 → **32-day** (31 → **32 fetches silent** each), `deepread_40240593/` 24 → **25-day** (23 → **24 consecutive silent fetches** since creation; mtime unchanged at 2026-08-24 16:31 +0800).
|
||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 5 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-18T18:15Z)" paragraph + the description frontmatter mentions the 2026-09-18T18:15Z git-repo-1 fetch + the **34th git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-7th-consecutive-fetch** event + the 2 new wiki commits (34th/35th sources-sync sequence: `46a508d` daily update + `c6e81a5` sources-sync thirty-fifth) + the 37/32/32/25-day carry-forward bump + the 11-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 5 calendar days + the Robin 8-07 added untracked regional agent files
|
||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-18T18:15Z fetch; tags refreshed to add `2026-09-18`, `vault-silent-9d`, `thirty-fifth-sources-sync`, `thirty-fourth-git-repo-fetch`, `wiki-2-new-commits`, `moc-organoid-3d-culture-uncommitted-edit-5d`, `deepread-40240593-twenty-five-silent-fetches`, `robin-8-07-added-untracked-regional-agent-files`; timestamp refreshed to `2026-09-18T18:15:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 37/32/32/25-day; Recent-commits-wiki table refreshed (2 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-18T18:15Z fetch + the vault HEAD unchanged for the 7th consecutive fetch + the 2 new wiki commits (34th/35th sources-sync sequence) + the 37/32/32/25-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted for 5 calendar days; 04-Literature/Deep-Reads/ breakdown table refreshed with the 37/32/32/25-day carry-forward bump
|
||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-18T18:15Z fetch + the vault HEAD unchanged at `09bec367` for the 7th consecutive fetch + the wiki HEAD `c6e81a5` + the 37/32/32/25-day carry-forward bump + the **34th git-repo-1 fetch** of the 2026-08-07 streak + the 11-dirty-file baseline
|
||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-18T18:15Z fetch + the **thirty-fifth** consecutive sources-sync + the 11-dirty-file baseline + the 37/32/32/25-day carry-forward bump
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-18T18:15Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
||
## Synthesis-policy — this run (2026-09-17T18:22Z)
|
||
|
||
- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **6th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **6 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-16T18:18Z fetch recorded 5 calendar days; +1 calendar day from 2026-09-16 → 2026-09-17). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 4 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-16T18:18Z → 2026-09-17T18:22Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md).
|
||
- **Wiki delta: automated maintenance only** (1 daily update + 1 sources-sync). The 2 new wiki commits in the 24-hour window are routine: `3d95e56` daily update 2026-09-17 + `307e038` sources-sync 2026-09-17 — the **thirty-fourth** consecutive sources-sync (continuing the count-data wipe pattern that started at the 2026-08-15 `2507925` commit). The wiki HEAD bump `ac46732` → `307e038` covers 1 calendar day.
|
||
- **Dirty-file baseline change**: 11-dirty baseline (at 2026-09-16T18:18Z) → **10-dirty baseline** (at 2026-09-17T18:22Z). The `3d95e56` daily update cleared `index.md` + `sources/README.md` that were dirty at the prior fetch; `sources/literature.md` was newly re-touched this run (not previously in the 11-dirty list — likely a re-touch from the synthesis-side write path); the `307e038` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`). The 10-dirty-file list at 2026-09-17T18:22Z: `M .last-update.json` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/literature.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`.
|
||
- **Carry-forward bump** to **36/31/31/24-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak, +1 day from the 2026-09-16 fetch's 35/30/30/23-day): `Review/zhou2023_computer_vision_microfluidics.md` 35 → **36-day** (33 → **34 fetches silent**), `celvivo_commercial/` + `templates/` 30 → **31-day** (30 → **31 fetches silent** each), `deepread_40240593/` 23 → **24-day** (22 → **23 consecutive silent fetches** since creation; mtime unchanged at 2026-08-24 16:31 +0800).
|
||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 4 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-17T18:22Z)" paragraph + the description frontmatter mentions the 2026-09-17T18:22Z git-repo-1 fetch + the **33rd git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-6th-consecutive-fetch** event + the 2 new wiki commits (33rd/34th sources-sync sequence: `3d95e56` daily update + `307e038` sources-sync thirty-fourth) + the 36/31/31/24-day carry-forward bump + the 10-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 4 calendar days + the Robin 8-07 added untracked regional agent files
|
||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-17T18:22Z fetch; tags refreshed to add `2026-09-17`, `vault-silent-8d`, `thirty-fourth-sources-sync`, `thirty-third-git-repo-fetch`, `wiki-2-new-commits`, `moc-organoid-3d-culture-uncommitted-edit-4d`, `deepread-40240593-twenty-four-silent-fetches`, `robin-8-07-added-untracked-regional-agent-files`; timestamp refreshed to `2026-09-17T18:22:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 36/31/31/24-day; Recent-commits-wiki table refreshed (2 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-17T18:22Z fetch + the vault HEAD unchanged for the 6th consecutive fetch + the 2 new wiki commits (33rd/34th sources-sync sequence) + the 36/31/31/24-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted for 4 calendar days; 04-Literature/Deep-Reads/ breakdown table refreshed with the 36/31/31/24-day carry-forward bump
|
||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-17T18:22Z fetch + the vault HEAD unchanged at `09bec367` for the 6th consecutive fetch + the wiki HEAD `307e038` + the 36/31/31/24-day carry-forward bump + the **33rd git-repo-1 fetch** of the 2026-08-07 streak + the 10-dirty-file baseline
|
||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-17T18:22Z fetch + the **thirty-fourth** consecutive sources-sync + the 10-dirty-file baseline + the 36/31/31/24-day carry-forward bump
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-17T18:22Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
||
## Synthesis-policy — this run (2026-09-16T18:18Z)
|
||
|
||
- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **5th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **5 calendar days of vault silence** since the 2026-09-11 resumption. The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 3 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-13T18:08Z → 2026-09-16T18:18Z 72-hour window. The 8 untracked regional agent files from 2026-08-07 carry forward unchanged.
|
||
- **Wiki delta: automated maintenance only** (3 daily updates + 3 sources-syncs). The 6 new wiki commits in the 72-hour window are routine: `667730f` daily update 2026-09-14 + `09f47d6` sources-sync 2026-09-14 thirty-first + `f38cebf` daily update 2026-09-15 + `f5465f9` sources-sync 2026-09-15 thirty-second + `73dae5e` daily update 2026-09-16 + `ac46732` sources-sync 2026-09-16 thirty-third. The wiki HEAD bump `5f33bd3` → `ac46732` covers 3 calendar days.
|
||
- **Dirty-file baseline change**: 8-dirty baseline (at 2026-09-13T18:08Z) → **11-dirty baseline** (at 2026-09-16T18:18Z). The 3 daily-update cycles re-touched `index.md` + `quickstart.md` + `themes.md` (the 2026-09-13 daily update had cleared them); the 3 sources-syncs re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) each cycle. The 11-dirty-file list at 2026-09-16T18:18Z: `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/README.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`.
|
||
- **Carry-forward bump** to **35/30/30/23-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak): `Review/zhou2023_computer_vision_microfluidics.md` 32 → **35-day** (33 fetches silent), `celvivo_commercial/` + `templates/` 27 → **30-day** (30 fetches silent each), `deepread_40240593/` 20 → **23-day** (22 consecutive silent fetches since creation; mtime unchanged at 2026-08-24 16:31 +0800).
|
||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 3 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-16T18:18Z)" paragraph + the description frontmatter mentions the 2026-09-16T18:18Z git-repo-1 fetch + the **32nd git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-5th-consecutive-fetch** event + the 6 new wiki commits (31st/32nd/33rd sources-sync sequence) + the 35/30/30/23-day carry-forward bump + the 11-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 3 calendar days
|
||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-16T18:18Z fetch; tags refreshed to add `2026-09-16`, `2026-09-15`, `2026-09-14`, `vault-silent-5d`, `vault-silent-6d`, `vault-silent-7d`, `moc-organoid-3d-culture-uncommitted-edit-3d`, `vault-working-tree-moc-modification-2026-09-13-persists`, `thirty-first-sources-sync`, `thirty-second-sources-sync`, `thirty-third-sources-sync`, `thirty-second-git-repo-fetch`, `wiki-6-new-commits`, `deepread-40240593-twenty-two-silent-fetches`, `deepread-40240593-twenty-three-silent-fetches`; timestamp refreshed to `2026-09-16T18:18:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 35/30/30/23-day; Recent-commits-wiki table refreshed (6 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-16T18:18Z fetch + the vault HEAD unchanged for the 5th consecutive fetch + the 6 new wiki commits (31st/32nd/33rd sources-sync sequence) + the 35/30/30/23-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted; 04-Literature/Deep-Reads/ breakdown table refreshed with the 35/30/30/23-day carry-forward bump
|
||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-16T18:18Z fetch + the vault HEAD unchanged at `09bec367` for the 5th consecutive fetch + the wiki HEAD `ac46732` + the 35/30/30/23-day carry-forward bump + the **32nd git-repo-1 fetch** of the 2026-08-07 streak + the 11-dirty-file baseline
|
||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-16T18:18Z fetch + the **thirty-third** consecutive sources-sync + the 11-dirty-file baseline + the 35/30/30/23-day carry-forward bump
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-16T18:18Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
||
## Synthesis-policy — this run (2026-09-13T18:08Z)
|
||
|
||
- **Vault delta: 0 new vault commits + 1 working-tree modification** — vault HEAD unchanged at `09bec367` (the 2nd consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption). The only vault change is the MOC-file edit: `M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"` (mtime 2026-09-13 11:55:42 +0800) — Robin is actively editing the MOC index file but has not yet committed. This is the first vault working-tree modification since the 2026-08-24/25 burst (the 2026-08-31 cluster was an in-vault commit, not an uncommitted edit), and it routes through the MOC-folder rather than the `deepread_<slug>/` working-folder pipeline that the 2026-08-24/25 burst had hypothesized. The `deepread_40240593/` working folder is still silent (mtime unchanged across 19 consecutive silent fetches since the 2026-08-24 16:31 +0800 baseline).
|
||
- **Wiki delta: automated maintenance only** (CLI metadata cycle + sources-sync + daily update + sources-sync). The 4 new wiki commits in the 48-hour window are routine: 2 daily updates (`999a37d` + `0447186`) + 2 sources-syncs (`7cfb801` twenty-ninth + `5f33bd3` thirtieth). The wiki HEAD bump `55d930f` → `5f33bd3` covers 2 calendar days.
|
||
- **Dirty-file baseline change**: 10-dirty baseline (at 2026-09-11T18:14Z) → **8-dirty baseline** (at 2026-09-13T18:08Z). Different shape: `index.md` + `quickstart.md` + `sources/git-repo.md` + `themes.md` were cleared by the `999a37d` daily update; new `M sources/openwiki-version-drift.md` appeared. The 8-dirty-file list at 2026-09-13T18:08Z: `M .last-update.json` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md`.
|
||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes that alter the synthesis-layer shape) and the wiki delta is automated maintenance only. The MOC-file working-tree edit is uncommitted; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-13T18:08Z)" paragraph + the description frontmatter mentions the 2026-09-13T18:08Z git-repo-1 fetch + the vault-unchanged state + the 4 new wiki commits (28th/29th/30th sources-sync sequence) + the 32/27/27/20-day carry-forward bump + the 8-dirty-file baseline + the MOC-file working-tree modification
|
||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-13T18:08Z fetch; tags refreshed to add `2026-09-13`, `2026-09-12`, `twenty-ninth-sources-sync`, `thirtieth-sources-sync`, `thirtieth-git-repo-fetch`, `thirty-first-git-repo-fetch`, `deepread-40240593-twenty-silent-fetches`, `moc-organoid-3d-culture-uncommitted-edits`, `vault-working-tree-moc-modification-2026-09-13`; timestamp refreshed to `2026-09-13T18:08:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 32/27/27/20-day; Recent-commits-wiki table refreshed (4 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-13T18:08Z fetch + the vault HEAD unchanged + the 4 new wiki commits + the 32/27/27/20-day carry-forward bump + the MOC-file working-tree modification; 04-Literature/Deep-Reads/ breakdown table refreshed with the 32/27/27/20-day carry-forward bump
|
||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-13T18:08Z fetch + the vault HEAD unchanged + the 4 new wiki commits (28th/29th/30th sources-sync) + the 32/27/27/20-day carry-forward bump + the **31st git-repo-1 fetch** of the 2026-08-07 streak + the 8-dirty-file baseline
|
||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-13T18:08Z fetch + the **thirtieth** consecutive sources-sync + the 8-dirty-file baseline + the 32/27/27/20-day carry-forward bump
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-13T18:08Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
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## Synthesis-policy — this run (2026-09-11T18:14Z)
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|
||
- **Vault delta: 2 new vault commits** (Tomas 2026 + Vijakumaran 2026) — vault silence streak BROKEN after 11 calendar days since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster. Both new papers route through the standard `04-Literature/Deep-Reads/<application-domain>/<DOI>.md` pattern. The **v4 Flywheel auto-sink pipeline** (visible in the `09bec367` commit message "飞轮 v4 自动 sink") is the first observation of Robin's LDR pipeline v4 in action — the v3 SOP was 9 steps (per the 2026-08-25 `9aa2af4c` vendor-mapping retrofit); the v4 auto-sink iterates the SOP with an automated commit/sink step.
|
||
- **Wiki delta: automated maintenance only** (CLI metadata cycle + sources-sync + daily update + sources-sync). The 4 new wiki commits are routine: 2 daily updates + 2 sources-syncs (the standard cadence).
|
||
- **Synthesis-layer impact**:
|
||
- **Vault silence streak BROKEN** — flips the narrative from "11 calendar days of vault silence" to "vault resumed after 11-day pause" + "2 new vault commits since the 2026-08-31 cluster" + "v4 Flywheel auto-sink pipeline first observation"
|
||
- **`/sources/literature.md`** gets a new `2026-09-11 (Vijakumaran 2026 brain-organoid ALI oxygen engineering — first v4 Flywheel auto-sink entry)` row; the Tomas 2026 entry was added in a prior run (2026-09-10 row already present)
|
||
- **`/themes.md`** `class-organoid-3d-bioprinting` row gets Last-seen refresh `2026-08-25` → `2026-09-11` + Evidence count bump `37+` → `39+` (Tomas 2026 + Vijakumaran 2026 = 2 new entries)
|
||
- **`/themes/05-robin-research.md`** vault-snapshot metadata refreshed + 04-Literature/Deep-Reads/ breakdown table updated with Vijakumaran 2026 row + the 4 carry-forward untracked directories bumped to 30/25/25/18-day carry-forward
|
||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-11T18:14Z)" paragraph + the description frontmatter mentions the 2026-09-11T18:14Z git-repo-1 fetch + the vault silence streak broken + the 2 new vault commits + the 4 new wiki commits + the 30/25/25/18-day carry-forward bump
|
||
- **`/sources/index.md`** + **`/sources/README.md`** get their git-repo.md description entries refreshed
|
||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-11T18:14Z)" paragraph on `/quickstart.md` for the full delta list.
|
||
|
||
## Previous run
|
||
|
||
- 2026-09-25T18:17Z — vault HEAD unchanged at `09bec367` for the 14th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 12 calendar days at this fetch), 2 new wiki commits (`069eef3` daily update 2026-09-25 + `f9bb2e5` sources-sync 2026-09-25 — the **forty-second** consecutive sources-sync), 11-dirty-file baseline (down from 12-dirty at the 2026-09-24T18:07Z fetch — the `069eef3` daily update cleared `sources/git-repo.md` from the dirty list; net: −1 vs the 12-dirty baseline), carry-forward bump to 44/39/39/32-day. See the "Synthesis-policy — this run (2026-09-25T18:17Z)" section above + the "Latest update — git-repo-1 (2026-09-25T18:17Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-24T18:07Z — vault HEAD unchanged at `09bec367` for the 13th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 11 calendar days at this fetch), 2 new wiki commits (`dc1a9fb` daily update 2026-09-24 + `17e9faf` sources-sync 2026-09-24 — the **forty-first** consecutive sources-sync), 12-dirty-file baseline (up from 10-dirty at the 2026-09-23T18:10Z fetch — the `17e9faf` sources-sync re-touched the 4 source-sync files; net: +2 vs the 10-dirty baseline), carry-forward bump to 43/38/38/31-day. See the "Synthesis-policy — this run (2026-09-24T18:07Z)" section above + the "Latest update — git-repo-1 (2026-09-24T18:07Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-23T18:10Z — vault HEAD unchanged at `09bec367` for the 12th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 10 calendar days at this fetch), 2 new wiki commits (`4c145e2` daily update 2026-09-23 + `6aa1db2` sources-sync 2026-09-23 — the **fortieth** consecutive sources-sync), 10-dirty-file baseline (up from 8-dirty at the 2026-09-22T18:08Z fetch — the `6aa1db2` sources-sync re-touched the 4 source-sync files; net: +2 vs the 8-dirty baseline), carry-forward bump to 42/37/37/30-day. See the "Synthesis-policy — this run (2026-09-23T18:10Z)" section above + the "Latest update — git-repo-1 (2026-09-23T18:10Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-22T18:08Z — vault HEAD unchanged at `09bec367` for the 11th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 9 calendar days at this fetch), 2 new wiki commits (`4e257c9` daily update 2026-09-22 + `4ee7fc1` sources-sync 2026-09-22 — the **thirty-ninth** consecutive sources-sync), 8-dirty-file baseline (down from 10-dirty at the 2026-09-21T18:17Z fetch — the `4e257c9` daily update cleared 7 files that the prior daily update had not been able to clean), carry-forward bump to 41/36/36/29-day. See the "Synthesis-policy — this run (2026-09-22T18:08Z)" section above + the "Latest update — git-repo-1 (2026-09-22T18:08Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-21T18:17Z — vault HEAD unchanged at `09bec367` for the 10th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 8 calendar days at this fetch), 2 new wiki commits (`5cc20ce` daily update 2026-09-21 + `d5a2b15` sources-sync 2026-09-21 — the **thirty-eighth** consecutive sources-sync), 10-dirty-file baseline (down from 12-dirty at the 2026-09-20T18:07Z fetch), carry-forward bump to 40/35/35/28-day. See the "Synthesis-policy — this run (2026-09-21T18:17Z)" section above + the "Latest update — git-repo-1 (2026-09-21T18:17Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-20T18:07Z — vault HEAD unchanged at `09bec367` for the 9th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 7 calendar days at this fetch), 2 new wiki commits (`ea5d9b9` daily update 2026-09-20 + `30c7e85` sources-sync 2026-09-20 — the **thirty-seventh** consecutive sources-sync), 3-dirty-file baseline (down sharply from 5-dirty at the 2026-09-19 fetch — `ea5d9b9` daily update cleared `index.md` + `quickstart.md` + `themes.md` of dirty state), carry-forward bump to 39/34/34/27-day. See the "Synthesis-policy — this run (2026-09-20T18:07Z)" section above + the "Latest update — git-repo-1 (2026-09-20T18:07Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-19T18:04Z — vault HEAD unchanged at `09bec367` for the 8th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 6 calendar days at this fetch), 2 new wiki commits (`1ba0fb1` sources-sync 2026-09-19 — the **thirty-sixth** consecutive sources-sync — + `6e2a733` daily update 2026-09-19), 5-dirty-file baseline (down from 11-dirty at the 2026-09-18 fetch), carry-forward bump to 38/33/33/26-day. See the "Synthesis-policy — this run (2026-09-19T18:04Z)" section above + the "Latest update — git-repo-1 (2026-09-19T18:04Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-18T18:15Z — vault HEAD unchanged at `09bec367` for the 7th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 5 calendar days at this fetch), 2 new wiki commits (`46a508d` daily update 2026-09-18 + `c6e81a5` sources-sync 2026-09-18 — the **thirty-fifth** consecutive sources-sync), 11-dirty-file baseline (up from 10-dirty at the 2026-09-17 fetch), carry-forward bump to 37/32/32/25-day. See the "Synthesis-policy — this run (2026-09-18T18:15Z)" section above + the "Latest update — git-repo-1 (2026-09-18T18:15Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-17T18:22Z — vault HEAD unchanged at `09bec367` for the 6th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 4 calendar days at this fetch), 2 new wiki commits (`3d95e56` daily update 2026-09-17 + `307e038` sources-sync 2026-09-17 — the **thirty-fourth** consecutive sources-sync), 10-dirty-file baseline (down from 11-dirty at the 2026-09-16 fetch), carry-forward bump to 36/31/31/24-day. See the "Synthesis-policy — this run (2026-09-17T18:22Z)" section above + the "Latest update — git-repo-1 (2026-09-17T18:22Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-16T18:18Z — vault HEAD unchanged at `09bec367` for the 5th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 3 calendar days at this fetch), 6 new wiki commits (`667730f` daily update 2026-09-14 + `09f47d6` sources-sync 2026-09-14 — the **thirty-first** consecutive sources-sync + `f38cebf` daily update 2026-09-15 + `f5465f9` sources-sync 2026-09-15 — the **thirty-second** consecutive sources-sync + `73dae5e` daily update 2026-09-16 + `ac46732` sources-sync 2026-09-16 — the **thirty-third** consecutive sources-sync), 11-dirty-file baseline (up from 8-dirty at the 2026-09-13 fetch), carry-forward bump to 35/30/30/23-day. See the "Synthesis-policy — this run (2026-09-16T18:18Z)" section above + the "Latest update — git-repo-1 (2026-09-16T18:18Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-13T18:08Z — vault HEAD unchanged at `09bec367` for the 2nd consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800), 4 new wiki commits (`7cfb801` sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync + `999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 + `5f33bd3` sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync), 8-dirty-file baseline (down from 10-dirty at the 2026-09-11 fetch), carry-forward bump to 32/27/27/20-day. See the "Synthesis-policy — this run (2026-09-13T18:08Z)" section above + the "Latest update — git-repo-1 (2026-09-13T18:08Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-11T18:14Z — vault HEAD bumped `391e4713` → `09bec367` (**vault silence streak BROKEN** after 11 calendar days), 2 new vault commits (`1fd63019` Tomas 2026 HGSC + `09bec367` Vijakumaran 2026 brain-organoid ALI oxygen engineering — first v4 Flywheel auto-sink entry), 4 new wiki commits (`299eeab` sources-sync 2026-09-10 twenty-seventh + `1e6a7cb` daily update 2026-09-10 + `2bf104e` daily update 2026-09-11 + `55d930f` sources-sync 2026-09-11 twenty-eighth), 10-dirty-file baseline, 4 carry-forward untracked directories bumped to 30/25/25/18-day, 1 new untracked `NO` file. See the "Synthesis-policy — this run (2026-09-11T18:14Z)" section above + the "Latest update — git-repo-1 (2026-09-11T18:14Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-09T18:11Z — vault HEAD unchanged at `391e4713`, 2 new wiki commits (`f7450e9` + `7e2072c` — the **twenty-sixth** consecutive sources-sync), 10-dirty-file baseline, the 4 carry-forward untracked directories bumped to 29/24/24/17-day carry-forward. See [`/themes/05-robin-research.md`](/themes/05-robin-research.md) + `/quickstart.md` for the full synthesis of that run.
|
||
- 2026-09-10T18:19Z — manifest written by a prior ingestion cycle but no corresponding wiki update (the wiki HEAD was still `299eeab` at the 2026-09-10T18:19Z manifest timestamp, between the `7e2072c` 2026-09-09 sources-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp).
|