OpenWiki Bot
21 KiB
21 KiB
type, title, description, resource, tags
| type | title | description | resource | tags | |||||
|---|---|---|---|---|---|---|---|---|---|
| Reference | Git repo — evidence index (Obsidian vault, Robin) | Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD d7df3830, 2026-08-08) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD c94940c7, 2026-08-08). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here. |
~/.openwiki/connectors/git-repo/config.json |
|
Git repo — evidence index (Obsidian vault + OpenWiki wiki)
Compact manifest of the two local git repos configured under the
git-repo connector: Robin's Obsidian vault and the local OpenWiki
wiki. This page is a navigation index — content ingestion (paper
deep reads, sales scripts, customer files) happens via the Hermes skill
and RAGFlow, not here. Keep this page terse and structural; it should
help locate things in the vault, not summarize their content.
Connector
- Source instance:
git-repo-1(configured under~/.openwiki/connectors/git-repo/config.json) - Configured repos:
obsidian-vault→/home/ldw/workspace(Robin Obsidian vault, onmain, HEADd7df3830a28a48b0129a46729ab2357e231a2ec5as of 2026-08-08).openwiki-wiki→/home/ldw/.openwiki/wiki(the OpenWiki knowledge base itself, onmain, HEADc94940c7d24bdf77680822a86c81355acff93ebfas of 2026-08-08).
- Auth: local paths only — no remote, no credentials.
- Latest fetch:
2026-08-08T18:11:31Z(raw manifest~/.openwiki/connectors/git-repo/raw/2026-08-08T18-11-31-856Z/manifest.json). - Source config:
~/.openwiki/connectors/git-repo/config.json - State:
~/.openwiki/connectors/git-repo/state.jsonrecordslatestIdsper repo; the 2026-08-08 fetch bumped bothobsidian-vault(from2341383etod7df3830) andopenwiki-wiki(from45af5a4/9e80977toc94940c7).
obsidian-vault — working-tree status (2026-08-08)
-
Branch:
main -
HEAD:
d7df3830a28a48b0129a46729ab2357e231a2ec5(obsidian-vault top of new remote / post-8-07 sweep) -
Ahead of origin/main: 9 commits (the 2026-07-29 / 2026-07-28 cluster was extended by 4–5 new deep-read commits on 2026-08-07 / 2026-08-08).
-
Dirty: yes — 8 untracked 8-07 distributor/agent files + the literature-stage files Robin works on between commits.
-
Working-tree status (raw manifest, abbreviated):
Status Path M(committed 2026-08-08)obsidian-vault/04-Literature/Deep-Reads/Cells/fernandez-vallone-2026-thsdc-brain-organoids.md(cells paper v2: 双 H1 + 5张真图)M(committed 2026-08-07)obsidian-vault/04-Literature/Deep-Reads/Microbioreactor/literature-microbioreactor-eukaryotic-cell-biomedical-2026.md(fix v2 with SeaFile links)??(untracked)02-Clients/Agents/全国经销商地图-2026-0807.md??(untracked)02-Clients/Agents/华北-2026-0807.md??(untracked)02-Clients/Agents/华东-2026-0807.md??(untracked)02-Clients/Agents/华南-2026-0807.md??(untracked)02-Clients/Agents/山东-2026-0807.md??(untracked)02-Clients/Agents/湖北-2026-0807.md??(untracked)02-Clients/Agents/西北-2026-0807.md??(untracked)02-Clients/Agents/西南-2026-0807.md??(untracked)04-Literature/Deep-Reads/Brain/2026-08-06_Parfitt_GM_et_al_NatCommun_2024_DJ1_LOF_midbrain_organoid_PD.md??(untracked)Liu2026_NBME_shape_conformal_organoid.md??(untracked)Miao2025_Cell_v2.md??(untracked)Miao2025_Cell_vascularized_organoid.md??(untracked)Microbioreactor_2026_Rosero_FrontBioeng.md??(untracked)dify精读进度-20260805.md??(untracked)literature_deepread_v6.py??(untracked)obsidian-vault/rustdesk-selfhosted-2026-08-05.md??(untracked)retinal_organoid_deep_read_2026-08-07.md??(untracked)文悦精读流水线.yml+ v2/v3/v4/v5-clean variantsThe 8 untracked
*2026-0807.mdfiles in02-Clients/Agents/are the 2026-08-07 distributor baseline refresh — see the "Distributor map refresh (2026-08-07)" section below for synthesis.
Recent commits (latest first)
| Date | Hash | Note |
|---|---|---|
| 2026-08-08 | d7df3830 |
cells paper v2: 双 H1 + 5张真图 (xref) — Fernandez Vallone 2026 |
| 2026-08-08 | 6c16dc05 |
精读: Fernandez Vallone 2026 Cells hiPSC 脑类器官 THSDC |
| 2026-08-07 | 65fef021 |
fix: v2 with SeaFile links — Microbioreactor 2026 |
| 2026-08-07 | 18bee69f |
feat: Microbioreactor design 2026 Front Bioeng Biotechnol Mini Review (PMID 42516424) |
| 2026-08-08 | 1614ccf9 |
fix: v11 - forwarding per skill template (Liu 2026) |
| 2026-08-08 | a7cfb8a4 |
fix: final - per Research SOP strict + clean internal traces (Liu 2026) |
| 2026-08-08 | d1e8c6dd |
fix: v5 - per Research SOP + page 946 benchmark (Liu 2026) |
| 2026-08-08 | b7882b81 |
fix: v4 - add forward message (Liu 2026) |
| 2026-08-08 | 84e93402 |
fix: v3 - Fig 3 restored from page 6, audit table removed (Liu 2026) |
| 2026-08-08 | a69ad9c4 |
literature: liu 2026 NBME shape-conformal organoid |
| 2026-08-08 | 1c05eee7 |
literature: miao 2025 cell organoid vascularization v2 |
| 2026-08-08 | a0810433 |
精读: Sharma K 2026 Cell Stem Cell 视网膜类器官血管化RGC存活与功能成熟 |
| 2026-07-29 | 2341383e |
fix(hook4): 湖北行去掉 'Robin 8 月出差高发地' 残留 (Robin 真实出差意图) |
| 2026-07-29 | aa8fd2bc |
fix(hook4): 改标题 '下次出差' → '按 xlsx 缺口', Robin 后续自规划出差路径 |
| 2026-07-29 | 4b237a82 |
feat(hook): 4 个经销商管理 Hook 升级 |
| 2026-07-29 | b9da34dc |
fix(literature): Organoids 2026 综述 - 按 literature-deep-read-review SOP 重写 |
| 2026-07-29 | 0cd44fa0 |
feat(literature): 精读 Organoids for disease modeling and treatment 2026 综述 |
| 2026-07-28 | 642e3dc6 |
feat(agent): 新增代理商技术同事董慧群档案 (推 CelVivo 产品) |
| 2026-07-28 | 2718e46d |
feat(literature): Parate 2020 SCRT — PEMF 增强 MSC 旁分泌功能促软骨再生 |
| 2026-07-28 | 032de92f |
feat: 精读 Lee 2025 Front Vet Sci 犬脂肪源 MSC 3D 球体 |
The 2026-08-08 cluster is the literature flywheel-sync output (Liu
2026, Miao 2025 v2, Sharma 2026) — already indexed on
/sources/literature.md. The
2026-08-07 / 2026-08-08 micro-revisions on Liu 2026 (a69ad9c4 →
1614ccf9) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran
on the same paper.
openwiki-wiki — working-tree status (2026-08-08)
- Branch:
main - HEAD:
c94940c7d24bdf77680822a86c81355acff93ebf(thefeat: add Microbioreactor 2026 v4update commit for the literature index) - Working-tree state: 17 staged-but-not-yet-committed file changes
(this OpenWiki run's own edits, plus 3 new literature deep-read
synthesis pages from the 2026-08-08 flywheel-sync:
sources/literature-liu-2026-nbme-shape-conformal-organoid-deepread.md,sources/literature-miao-2025-cell-vascularization-v2-deepread.md,sources/literature-sharma-2026-cell-stem-cell-vascularized-retinal-organoid-rgc-deepread.md). - Auth: local path only — no remote, no credentials.
Recent commits (latest first)
| Date | Hash | Note |
|---|---|---|
| 2026-08-08 | c94940c7 |
feat: add Microbioreactor 2026 v4 (PMID 42516424, ID 1696) |
| 2026-08-08 | 7f65024 |
feat: add Microbioreactor 2026 v3 (PMID 42516424) |
| 2026-08-08 | ea4f14a |
feat: add Microbioreactor 2026 v2 (PMID 42516424) |
| 2026-08-08 | a193e46 |
feat: add Microbioreactor 2026 (PMID 42516424) deep-read entry |
| 2026-08-08 | bf90a91 |
fix: liu 2026 wiki link to main path |
| 2026-08-08 | cf1dbe0 |
fix: liu 2026 final link |
| 2026-08-08 | 26efd2f |
fix: liu 2026 v5 link |
| 2026-08-08 | e18993a |
fix: liu 2026 v4 link |
| 2026-08-08 | b206bd9 |
fix: liu 2026 v3 link |
| 2026-08-08 | c26dbdf |
fix: liu 2026 wiki link to v2 |
| 2026-08-08 | 703c3d4 |
literature: liu 2026 NBME shape-conformal organoid |
| 2026-08-08 | 1b78735 |
literature: miao 2025 cell v2 |
| 2026-08-08 | 5adc406 |
chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-08) |
| 2026-08-08 | 037c5f3 |
lit: add Sharma K 2026 Cell Stem Cell vRO retinal organoid (PMID 41529691) |
| 2026-08-07 | 9e80977 |
feat(openwiki): complete data flywheel activation (2026-08-07) |
| 2026-08-07 | 45af5a4 |
chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-07) |
| 2026-08-07 | bcd4a4f |
chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-07) |
| 2026-08-07 | 0bbef0f |
feat(openwiki v0.3.1 --update): generate themes 4-5 + index.md + themes/ + sources/ index (2026-08-07) |
| 2026-08-07 | 285c53b |
feat(openwiki v0.3.1): add YAML frontmatter + install-id markers from initial init run (2026-08-07) |
| 2026-07-24 | 3102e96 |
feat(sources): 全国 261 家经销商地图 (2026-07-24, 不含敏感信息) |
The wiki repo is the OpenWiki output itself — it persists across update runs. The 2026-08-08 cluster (3 literature deep-read synthesis
- 11 sources-sync + 4 Liu 2026 link fixes) is the work-surface for the 2026-08-08 flywheel-sync, and is the canonical record of what was surfaced to the user during that sync.
Vault navigation index
The vault uses a numbered top-level layout. Scripts, caches, and temp*
working folders are excluded from this index.
| Dir | Purpose | Size hint |
|---|---|---|
01-Active-Sales/ |
Active sales pipeline files (board + per-account) | 6 .md |
02-Active-Deals/ |
Deal-level active docs | 1 .md |
02-Clients/, 02-Contacts/ |
Client & contact records | sparse |
03-Product/ |
Product briefs (e.g. 3Brain-Maxwell comparison) | 1 .md |
03-Resources/Agents/ |
Distributor / agent profiles | a handful |
03-Resources/End-Customers/ |
End-customer dossiers (3Brain MEA accounts, etc.) | 11+ .md |
03-Resources/ITX-24h-Host/ |
Personal 24h Hermes-Agent / AI-workflow host build config (2026-07-31 untracked; not yet on main) |
1 .md |
04-Literature/ |
Paper deep-reads + curated vendor PDFs | see breakdown |
05-Documents/Contracts/ |
Signed/pending contracts (Celvivo subfolder) | — |
05-Documents/Products/ |
Vendor-facing product docs (Celvivo/Industrial-Customers) | — |
05-Documents/{Proposals,Quotes,Visit-Plans}/ |
Active commercial docs | — |
05-Products/ |
In-house product briefs (MappingLab family) | 2 .md |
06-Sales/Competitors/ |
Competitor tracking | — |
06-Sales/Configurations/ |
Product configurations | — |
06-Sales/Content/{FAQ,Pain-Points,PPT-Scripts,Success-Stories,Training-Materials,推文模板}/ |
Sales content library | — |
06-Sales/{Price-List,Product-Mapping,Recommendation-Engine}/ |
Sales tooling | — |
99-Templates/ |
Reusable Obsidian templates | 14 .md |
memory/ |
Daily reports, weekly digests, .dreams, archive |
147 .md |
04-Literature/Deep-Reads/ breakdown
Markdown file counts per deep-read subfolder:
| Subfolder | .md count |
|---|---|
Organoid/ |
659 |
Celvivo/ |
142 |
3Brain/ |
136 |
Cellink/ |
129 |
Organoid-List/ |
51 |
Product-Reports/ |
38 |
Brain/ |
11 |
Brain-Tumor/ |
9 |
Cancer/ |
6 |
Liver/ |
6 |
Other/ |
6 |
RegenMed/ |
1 |
3Brain MEA/ |
3 |
Cardiac/ |
2 |
Kidney/ |
2 |
Retinal/ |
1 |
Microbioreactor/ |
1 (new as of 2026-08-07 — Rosero 2026 Front Bioeng Biotechnol) |
Cells/ |
1 (new as of 2026-08-08 — Fernandez Vallone 2026 Cells THSDC) |
Total ≈ 1,204 deep-read notes (+2 from the 2026-08-07 / 2026-08-08
cluster: Microbioreactor 2026 + Cells 2026 Fernandez Vallone). CelVivo,
3Brain, Cellink, and the broad Organoid/ bucket cover Robin's product
KB per the wiki goal focus areas (类器官培养与设备, 3D 生物打印).
Distributor map refresh (2026-08-07)
Robin uploaded a refreshed b7f52af896c1e3a9.xlsx on 2026-08-07 11:11,
producing 8 new *2026-0807.md regional files + a new
全国经销商地图-2026-0807.md index + a new product-association
index (_known_associations.md) + a new _meta.json reflecting the
259-dealer tally. The 2026-07-24 baseline (*2026-0724.md × 7 + index)
remains in the repo but is now stale.
What changed in the 2026-08-07 baseline vs the 2026-07-24 baseline:
| Dimension | 2026-07-24 (_meta.json) |
2026-08-07 (全国经销商地图-2026-0807.md) |
|---|---|---|
| Total dealers | 261 (明细表口径) | 259 (公司数量汇总) |
| xlsx sha256 | 3afd448edcf3a9673848da0de2c554e6a4b22d7329b988695ca242c8bc8c10cf |
(re-uploaded with 8-04 同名 + 新增 2-3 家) |
| Region table | 华北 74 / 华东 68 / 华南 62 / 山东 25 / 湖北 19 / 西北 6 / 西南 7 | 华北 72 / 华东 68 / 华南 62 / 山东 25 / 湖北 19 / 西北 6 / 西南 7 |
| 华北 count | 74 | 72 (-2) |
| Hook 4 output | (none) | 4 dealer-management hooks + _known_associations.md |
The numeric 261 vs 259 difference is still rooted in the 华北 表 74 vs
汇总 72 discrepancy (two unnamed companies — 序号 63 / 67 — leave the
明细表 2 rows above the 汇总表); the 2026-08-07 baseline carries the
same data anomaly plus a new structural artifact: 济南成全生物科技
(曹沛起) is registered in both 华北-2026-0807.md and 山东-2026-0807.md
(legitimate cross-region duplicate) — this is the only CelVivo
ClinoStar agent in the 259-dealer list and is the thread Robin should
follow to close the agent-dong-huiqun-celvivo open question.
_known_associations.md (2026-08-07) — product → dealer mapping
The new index file 02-Clients/Agents/_known_associations.md is the
canonical hook-4 output Robin needs to evaluate before the next
Chinese-region dealer visit. Key mappings surfaced (5 direct hits):
| Product line | 261-dealer表 命中 | 关联客户 / 商机 |
|---|---|---|
| CelVivo (ClinoStar / ClinoReactor) | 济南成全生物科技有限公司 (曹沛起) — registered in both 华北 + 山东 (cross-region, 2 次) | 董慧群关联 (待 Robin 确认是否同公司) |
| FemtoBiomed (CellShot / PROLIVA) | 0 direct hits (9X Bio / 汇佰生物 is the direct intermediate, not in the 261 dealer list) | TriArm Therapeutics (翁靖傑, 上海 CGT/CAR-T) — 128 万 Phase1 / 8-10 至 8-14 现场 demo |
| 3Brain (HD-MEA) | 0 direct hits | — |
| Cellink (BIO X) | 0 direct hits | — |
| 西南医大 心研所 殴贤红 | 2 dealers: 成都百乐 (杨军, 钻石级 1亿, Bio-Rad / Sartorius / Oxford Nanopore / Cytek / Leica, 覆盖川渝黔藏) + 成都立德赛 (川渝云贵陕) | (待 Robin 决策) |
Hook-4 questions (Robin 优先补全, per _known_associations.md):
- 董慧群 is which specific technical contact at 济南成全 — or is she at a different CelVivo-代理?
- 西南医大 殴贤红 → 成都百乐 vs 成都立德赛 — which dealer first?
- 邓昊伦 (02-Contacts/) 蛇类神经方向 → 3Brain HD-MEA 拜访?
- 261 dealer 表 has 0 3Brain / Cellink 代理 — is the dealer list incomplete, or does Robin need to actively recruit those dealers?
Log these as a new commitment on /commitments.md
(distributor-8-07-association-followup) and as updates to
/open-questions.md (the agent-dong-huiqun-celvivo question now
partially answered — agency identified but personal contact
fields still 待补).
Notable entities surfaced by the vault (structural hints only)
- CelVivo industrial customers program — a dedicated subfolder under
05-Documents/Products/Celvivo/Industrial-Customers/holdsCelVivo_中国工业 客户开发研究报告(v1 + v2),客户管线定位_1页图, and工业客户开发手册-v3. This is a self-contained CelVivo China commercial effort. - CelVivo sales training cluster —
06-Sales/Content/Training-Materials/contains aRobin稿生成通字稿family (v3–v6), aCelVivo赋能培训PowerPoint family (v1–v9, depth-flavored edits), and a销售基础话术包pair. Versions progress from 基础 → 5大管线 → 深度版 → 终稿修正 → 销量仅看. - 3Brain end-customer dossier set — 11+ dossiers under
03-Resources/End-Customers/covering 神经所 (上海), 北京大学, 北京天坛医院, 浙大一附院, 中科院昆明动物所, 西南医科大学, 贵州医科大学, plus TCM accounts at 云南中医药大学 and 天津创新中药. - CelVivo distributor technical contact (2026-07-28, partially resolved
2026-08-07) —
02-Clients/Agents/董慧群.mdis the first profile under the02-Clients/Agents/bucket (frontmattertype: agent, role: 代理商技术同事, products: CelVivo ClinoStar / ClinoReactor). The 2026-08-07_known_associations.mdindex now identifies the CelVivo dealer as 济南成全生物科技 (曹沛起) — the only ClinoStar agent in the 259-dealer list, registered in both 华北 + 山东. Robin still needs to confirm: (a) is 董慧群 the same agency? (b) phone / WeChat / served end-customers / opportunities. The agency-side gap is now closed. - ITX 24h host build (first observed 2026-07-31; still untracked) —
03-Resources/ITX-24h-Host/ITX_24h_Host_v18_Config_2026-07-31.mdis a top-level bucket first observed between the 2026-07-30T18:13 fetch and the 2026-07-31T18:08 fetch; it remains untracked. Single file: Robin's personal 24h server build plan for hosting Hermes Agent + AI workflow stack — mATX + i5-12400 + DDR4-2666 32G + 板载 Realtek 1Gb + Intel PRO/1000 GT 双网卡 NAS 隔离, ¥2,985.82, 10/11 parts arrived, planned hostnames/roles: 192.168.31.100 (主力机 SSH) vs 10.10.10.254 (RAGFlow / NAS RAGFlow API). Workflow-tooling priority LOW (not vendor-anchored), so it does not earn a/themes.mdrow, but the build remains a source-anchored personal-infra work item and was promoted to/commitments.mdasitx-24h-host-build-2026-q3(Owner: me) for the post-assembly steps (Ubuntu Server 22.04 install + 双网卡静态 IP + Hermes Agent install + 24h soak test). - Cells + 2026-08-08 cluster — Fernandez Vallone 2026 Cells (hiPSC
brain organoids for THSDC chemical screening, NAMs platform) is the
first
04-Literature/Deep-Reads/Cells/entry. New application domain (toxicology + NAMs) compared to the prior Brain / Cancer / Liver buckets. CelVivo + 3Brain application scenarios called out in tags. - Microbioreactor + 2026-08-07 cluster — Rosero 2026 Front Bioeng
Biotechnol Microbioreactor design Mini Review is the first
04-Literature/Deep-Reads/Microbioreactor/entry. Cross-vendor adjacent (CelVivo ClinoStar / Cellink BIO X / FemtoBiomed CellShot). Landed in NocoDBRobin_Picked_Papers(PMID 42516424, Wiki.js ID 1696). - Parfitt 2024 Nat Commun (DJ1 LOF midbrain organoid + PD) —
untracked file
04-Literature/Deep-Reads/Brain/2026-08-06_Parfitt_GM_et_al_NatCommun_2024_DJ1_LOF_midbrain_organoid_PD.md(15,972 bytes, mtime 2026-08-06). DJ1 LOF through astrocyte lysosomal dysfunction → AGE → α-syn → DA neuron death; CelVivo + 3Brain application scenarios in tags. Not yet onmain; pending Robin commit. - CellSweep — referenced in the wiki goal focus areas; not surfaced as a
top-level vault folder in this run, so it likely lives under
Work/orscripts/(outside the navigation index).
Synthesis policy for this source
- This run (2026-08-08): 1 new entry surfaced to
/commitments.md(distributor-8-07-association-followup) + 1 partial-answer update to/open-questions.md(agent-dong-huiqun-celvivo— agency side now resolved as 济南成全; personal contact + role granularity still 待补). The/themes/05-robin-research.mdtruth-of-vault snapshot moves to the new HEADd7df3830and the 2026-08-07 distributor map baseline. The/sources/distributors-china-2026.mdpage absorbs the 259-dealer 8-07 baseline (replacing the 261-dealer 7-24 baseline numbers) and the new_known_associations.mdindex. - The vault is a knowledge base, not a live signal stream; durable per-document synthesis (paper deep reads, sales scripts, customer files) requires reading individual files, which is delegated to the Hermes skill and RAGFlow.
- Future runs should keep this page structural. Promote a row to a canonical theme only when the connector observes a recurring workflow (e.g. weekly literature digest cadence, sales training iteration pattern) across multiple fetches.
Next update
Run openwiki_ingest_connector connectorId=git-repo (or
openwiki personal --update) to refresh. Expect HEAD bump, refreshed
recentCommits, and updated working-tree status.