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---
type: "Reference"
title: "Git repo — evidence index (Obsidian vault, Robin)"
description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD d7df3830, 2026-08-08) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD c94940c7, 2026-08-08). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
resource: "~/.openwiki/connectors/git-repo/config.json"
tags: [git-repo, evidence, vault, openwiki-wiki, source]
---
# Git repo — evidence index (Obsidian vault + OpenWiki wiki)
Compact manifest of the two local git repos configured under the
`git-repo` connector: Robin's Obsidian vault and the local OpenWiki
wiki. This page is a **navigation index** — content ingestion (paper
deep reads, sales scripts, customer files) happens via the Hermes skill
and RAGFlow, not here. Keep this page terse and structural; it should
help locate things in the vault, not summarize their content.
## Connector
- **Source instance:** `git-repo-1` (configured under
`~/.openwiki/connectors/git-repo/config.json`)
- **Configured repos:**
- `obsidian-vault``/home/ldw/workspace` (Robin Obsidian vault, on
`main`, HEAD `d7df3830a28a48b0129a46729ab2357e231a2ec5` as of
2026-08-08).
- `openwiki-wiki``/home/ldw/.openwiki/wiki` (the OpenWiki knowledge
base itself, on `main`, HEAD `c94940c7d24bdf77680822a86c81355acff93ebf`
as of 2026-08-08).
- **Auth:** local paths only — no remote, no credentials.
- **Latest fetch:** `2026-08-08T18:11:31Z` (raw manifest
`~/.openwiki/connectors/git-repo/raw/2026-08-08T18-11-31-856Z/manifest.json`).
- **Source config:** `~/.openwiki/connectors/git-repo/config.json`
- **State:** `~/.openwiki/connectors/git-repo/state.json` records
`latestIds` per repo; the 2026-08-08 fetch bumped both `obsidian-vault`
(from `2341383e` to `d7df3830`) and `openwiki-wiki` (from `45af5a4` /
`9e80977` to `c94940c7`).
## obsidian-vault — working-tree status (2026-08-08)
- **Branch:** `main`
- **HEAD:** `d7df3830a28a48b0129a46729ab2357e231a2ec5` (obsidian-vault top
of new remote / post-8-07 sweep)
- **Ahead of origin/main:** 9 commits (the 2026-07-29 / 2026-07-28 cluster
was extended by 45 new deep-read commits on 2026-08-07 / 2026-08-08).
- **Dirty:** yes — 8 untracked 8-07 distributor/agent files + the
literature-stage files Robin works on between commits.
- **Working-tree status (raw manifest, abbreviated):**
| Status | Path |
| --- | --- |
| `M` (committed 2026-08-08) | `obsidian-vault/04-Literature/Deep-Reads/Cells/fernandez-vallone-2026-thsdc-brain-organoids.md` (cells paper v2: 双 H1 + 5张真图) |
| `M` (committed 2026-08-07) | `obsidian-vault/04-Literature/Deep-Reads/Microbioreactor/literature-microbioreactor-eukaryotic-cell-biomedical-2026.md` (fix v2 with SeaFile links) |
| `??` (untracked) | `02-Clients/Agents/全国经销商地图-2026-0807.md` |
| `??` (untracked) | `02-Clients/Agents/华北-2026-0807.md` |
| `??` (untracked) | `02-Clients/Agents/华东-2026-0807.md` |
| `??` (untracked) | `02-Clients/Agents/华南-2026-0807.md` |
| `??` (untracked) | `02-Clients/Agents/山东-2026-0807.md` |
| `??` (untracked) | `02-Clients/Agents/湖北-2026-0807.md` |
| `??` (untracked) | `02-Clients/Agents/西北-2026-0807.md` |
| `??` (untracked) | `02-Clients/Agents/西南-2026-0807.md` |
| `??` (untracked) | `04-Literature/Deep-Reads/Brain/2026-08-06_Parfitt_GM_et_al_NatCommun_2024_DJ1_LOF_midbrain_organoid_PD.md` |
| `??` (untracked) | `Liu2026_NBME_shape_conformal_organoid.md` |
| `??` (untracked) | `Miao2025_Cell_v2.md` |
| `??` (untracked) | `Miao2025_Cell_vascularized_organoid.md` |
| `??` (untracked) | `Microbioreactor_2026_Rosero_FrontBioeng.md` |
| `??` (untracked) | `dify精读进度-20260805.md` |
| `??` (untracked) | `literature_deepread_v6.py` |
| `??` (untracked) | `obsidian-vault/rustdesk-selfhosted-2026-08-05.md` |
| `??` (untracked) | `retinal_organoid_deep_read_2026-08-07.md` |
| `??` (untracked) | `文悦精读流水线.yml` + v2/v3/v4/v5-clean variants |
The 8 untracked `*2026-0807.md` files in `02-Clients/Agents/` are the
**2026-08-07 distributor baseline refresh** — see the "Distributor
map refresh (2026-08-07)" section below for synthesis.
### Recent commits (latest first)
| Date | Hash | Note |
| --- | --- | --- |
| 2026-08-08 | `d7df3830` | cells paper v2: 双 H1 + 5张真图 (xref) — Fernandez Vallone 2026 |
| 2026-08-08 | `6c16dc05` | 精读: Fernandez Vallone 2026 Cells hiPSC 脑类器官 THSDC |
| 2026-08-07 | `65fef021` | fix: v2 with SeaFile links — Microbioreactor 2026 |
| 2026-08-07 | `18bee69f` | feat: Microbioreactor design 2026 Front Bioeng Biotechnol Mini Review (PMID 42516424) |
| 2026-08-08 | `1614ccf9` | fix: v11 - forwarding per skill template (Liu 2026) |
| 2026-08-08 | `a7cfb8a4` | fix: final - per Research SOP strict + clean internal traces (Liu 2026) |
| 2026-08-08 | `d1e8c6dd` | fix: v5 - per Research SOP + page 946 benchmark (Liu 2026) |
| 2026-08-08 | `b7882b81` | fix: v4 - add forward message (Liu 2026) |
| 2026-08-08 | `84e93402` | fix: v3 - Fig 3 restored from page 6, audit table removed (Liu 2026) |
| 2026-08-08 | `a69ad9c4` | literature: liu 2026 NBME shape-conformal organoid |
| 2026-08-08 | `1c05eee7` | literature: miao 2025 cell organoid vascularization v2 |
| 2026-08-08 | `a0810433` | 精读: Sharma K 2026 Cell Stem Cell 视网膜类器官血管化RGC存活与功能成熟 |
| 2026-07-29 | `2341383e` | fix(hook4): 湖北行去掉 'Robin 8 月出差高发地' 残留 (Robin 真实出差意图) |
| 2026-07-29 | `aa8fd2bc` | fix(hook4): 改标题 '下次出差' → '按 xlsx 缺口', Robin 后续自规划出差路径 |
| 2026-07-29 | `4b237a82` | feat(hook): 4 个经销商管理 Hook 升级 |
| 2026-07-29 | `b9da34dc` | fix(literature): Organoids 2026 综述 - 按 literature-deep-read-review SOP 重写 |
| 2026-07-29 | `0cd44fa0` | feat(literature): 精读 Organoids for disease modeling and treatment 2026 综述 |
| 2026-07-28 | `642e3dc6` | feat(agent): 新增代理商技术同事董慧群档案 (推 CelVivo 产品) |
| 2026-07-28 | `2718e46d` | feat(literature): Parate 2020 SCRT — PEMF 增强 MSC 旁分泌功能促软骨再生 |
| 2026-07-28 | `032de92f` | feat: 精读 Lee 2025 Front Vet Sci 犬脂肪源 MSC 3D 球体 |
The **2026-08-08 cluster** is the literature flywheel-sync output (Liu
2026, Miao 2025 v2, Sharma 2026) — already indexed on
[`/sources/literature.md`](/sources/literature.md). The
**2026-08-07 / 2026-08-08 micro-revisions** on Liu 2026 (`a69ad9c4`
`1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran
on the same paper.
## openwiki-wiki — working-tree status (2026-08-08)
- **Branch:** `main`
- **HEAD:** `c94940c7d24bdf77680822a86c81355acff93ebf` (the
`feat: add Microbioreactor 2026 v4` update commit for the
literature index)
- **Working-tree state:** 17 staged-but-not-yet-committed file changes
(this OpenWiki run's own edits, plus 3 new literature deep-read
synthesis pages from the 2026-08-08 flywheel-sync:
`sources/literature-liu-2026-nbme-shape-conformal-organoid-deepread.md`,
`sources/literature-miao-2025-cell-vascularization-v2-deepread.md`,
`sources/literature-sharma-2026-cell-stem-cell-vascularized-retinal-organoid-rgc-deepread.md`).
- **Auth:** local path only — no remote, no credentials.
### Recent commits (latest first)
| Date | Hash | Note |
| --- | --- | --- |
| 2026-08-08 | `c94940c7` | feat: add Microbioreactor 2026 v4 (PMID 42516424, ID 1696) |
| 2026-08-08 | `7f65024` | feat: add Microbioreactor 2026 v3 (PMID 42516424) |
| 2026-08-08 | `ea4f14a` | feat: add Microbioreactor 2026 v2 (PMID 42516424) |
| 2026-08-08 | `a193e46` | feat: add Microbioreactor 2026 (PMID 42516424) deep-read entry |
| 2026-08-08 | `bf90a91` | fix: liu 2026 wiki link to main path |
| 2026-08-08 | `cf1dbe0` | fix: liu 2026 final link |
| 2026-08-08 | `26efd2f` | fix: liu 2026 v5 link |
| 2026-08-08 | `e18993a` | fix: liu 2026 v4 link |
| 2026-08-08 | `b206bd9` | fix: liu 2026 v3 link |
| 2026-08-08 | `c26dbdf` | fix: liu 2026 wiki link to v2 |
| 2026-08-08 | `703c3d4` | literature: liu 2026 NBME shape-conformal organoid |
| 2026-08-08 | `1b78735` | literature: miao 2025 cell v2 |
| 2026-08-08 | `5adc406` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-08) |
| 2026-08-08 | `037c5f3` | lit: add Sharma K 2026 Cell Stem Cell vRO retinal organoid (PMID 41529691) |
| 2026-08-07 | `9e80977` | feat(openwiki): complete data flywheel activation (2026-08-07) |
| 2026-08-07 | `45af5a4` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-07) |
| 2026-08-07 | `bcd4a4f` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-07) |
| 2026-08-07 | `0bbef0f` | feat(openwiki v0.3.1 --update): generate themes 4-5 + index.md + themes/ + sources/ index (2026-08-07) |
| 2026-08-07 | `285c53b` | feat(openwiki v0.3.1): add YAML frontmatter + install-id markers from initial init run (2026-08-07) |
| 2026-07-24 | `3102e96` | feat(sources): 全国 261 家经销商地图 (2026-07-24, 不含敏感信息) |
The wiki repo is the OpenWiki output itself — it persists across
update runs. The 2026-08-08 cluster (3 literature deep-read synthesis
+ 11 sources-sync + 4 Liu 2026 link fixes) is the work-surface for
the 2026-08-08 flywheel-sync, and is the canonical record of what
was surfaced to the user during that sync.
## Vault navigation index
The vault uses a numbered top-level layout. Scripts, caches, and `temp*`
working folders are excluded from this index.
| Dir | Purpose | Size hint |
| --- | --- | --- |
| `01-Active-Sales/` | Active sales pipeline files (board + per-account) | 6 .md |
| `02-Active-Deals/` | Deal-level active docs | 1 .md |
| `02-Clients/`, `02-Contacts/` | Client & contact records | sparse |
| `03-Product/` | Product briefs (e.g. 3Brain-Maxwell comparison) | 1 .md |
| `03-Resources/Agents/` | Distributor / agent profiles | a handful |
| `03-Resources/End-Customers/` | End-customer dossiers (3Brain MEA accounts, etc.) | 11+ .md |
| `03-Resources/ITX-24h-Host/` | Personal 24h Hermes-Agent / AI-workflow host build config (2026-07-31 untracked; not yet on `main`) | 1 .md |
| `04-Literature/` | Paper deep-reads + curated vendor PDFs | see breakdown |
| `05-Documents/Contracts/` | Signed/pending contracts (Celvivo subfolder) | — |
| `05-Documents/Products/` | Vendor-facing product docs (Celvivo/Industrial-Customers) | — |
| `05-Documents/{Proposals,Quotes,Visit-Plans}/` | Active commercial docs | — |
| `05-Products/` | In-house product briefs (MappingLab family) | 2 .md |
| `06-Sales/Competitors/` | Competitor tracking | — |
| `06-Sales/Configurations/` | Product configurations | — |
| `06-Sales/Content/{FAQ,Pain-Points,PPT-Scripts,Success-Stories,Training-Materials,推文模板}/` | Sales content library | — |
| `06-Sales/{Price-List,Product-Mapping,Recommendation-Engine}/` | Sales tooling | — |
| `99-Templates/` | Reusable Obsidian templates | 14 .md |
| `memory/` | Daily reports, weekly digests, `.dreams`, archive | 147 .md |
### `04-Literature/Deep-Reads/` breakdown
Markdown file counts per deep-read subfolder:
| Subfolder | .md count |
| --- | --- |
| `Organoid/` | 659 |
| `Celvivo/` | 142 |
| `3Brain/` | 136 |
| `Cellink/` | 129 |
| `Organoid-List/` | 51 |
| `Product-Reports/` | 38 |
| `Brain/` | 11 |
| `Brain-Tumor/` | 9 |
| `Cancer/` | 6 |
| `Liver/` | 6 |
| `Other/` | 6 |
| `RegenMed/` | 1 |
| `3Brain MEA/` | 3 |
| `Cardiac/` | 2 |
| `Kidney/` | 2 |
| `Retinal/` | 1 |
| `Microbioreactor/` | 1 (new as of 2026-08-07 — Rosero 2026 Front Bioeng Biotechnol) |
| `Cells/` | 1 (new as of 2026-08-08 — Fernandez Vallone 2026 Cells THSDC) |
Total ≈ 1,204 deep-read notes (+2 from the 2026-08-07 / 2026-08-08
cluster: Microbioreactor 2026 + Cells 2026 Fernandez Vallone). CelVivo,
3Brain, Cellink, and the broad `Organoid/` bucket cover Robin's product
KB per the wiki goal focus areas (类器官培养与设备, 3D 生物打印).
## Distributor map refresh (2026-08-07)
Robin uploaded a refreshed `b7f52af896c1e3a9.xlsx` on 2026-08-07 11:11,
producing **8 new `*2026-0807.md` regional files** + a new
`全国经销商地图-2026-0807.md` index + a new **product-association
index** (`_known_associations.md`) + a new `_meta.json` reflecting the
259-dealer tally. The 2026-07-24 baseline (`*2026-0724.md` × 7 + index)
remains in the repo but is now stale.
What changed in the 2026-08-07 baseline vs the 2026-07-24 baseline:
| Dimension | 2026-07-24 (`_meta.json`) | 2026-08-07 (`全国经销商地图-2026-0807.md`) |
| --- | --- | --- |
| Total dealers | 261 (明细表口径) | 259 (公司数量汇总) |
| xlsx sha256 | `3afd448edcf3a9673848da0de2c554e6a4b22d7329b988695ca242c8bc8c10cf` | (re-uploaded with 8-04 同名 + 新增 2-3 家) |
| Region table | 华北 74 / 华东 68 / 华南 62 / 山东 25 / 湖北 19 / 西北 6 / 西南 7 | 华北 72 / 华东 68 / 华南 62 / 山东 25 / 湖北 19 / 西北 6 / 西南 7 |
| 华北 count | 74 | 72 (-2) |
| Hook 4 output | (none) | 4 dealer-management hooks + `_known_associations.md` |
The numeric 261 vs 259 difference is still rooted in the **华北 表 74 vs
汇总 72** discrepancy (two unnamed companies — 序号 63 / 67 — leave the
明细表 2 rows above the 汇总表); the 2026-08-07 baseline carries the
same data anomaly plus a new structural artifact: **济南成全生物科技
(曹沛起) is registered in both `华北-2026-0807.md` and `山东-2026-0807.md`
(legitimate cross-region duplicate)** — this is the only CelVivo
ClinoStar agent in the 259-dealer list and is the thread Robin should
follow to close the `agent-dong-huiqun-celvivo` open question.
### `_known_associations.md` (2026-08-07) — product → dealer mapping
The new index file `02-Clients/Agents/_known_associations.md` is the
canonical hook-4 output Robin needs to evaluate before the next
Chinese-region dealer visit. Key mappings surfaced (5 direct hits):
| Product line | 261-dealer表 命中 | 关联客户 / 商机 |
| --- | --- | --- |
| **CelVivo (ClinoStar / ClinoReactor)** | **济南成全生物科技有限公司 (曹沛起)** — registered in both 华北 + 山东 (cross-region, 2 次) | 董慧群关联 (待 Robin 确认是否同公司) |
| **FemtoBiomed (CellShot / PROLIVA)** | 0 direct hits (9X Bio / 汇佰生物 is the direct intermediate, not in the 261 dealer list) | TriArm Therapeutics (翁靖傑, 上海 CGT/CAR-T) — 128 万 Phase1 / 8-10 至 8-14 现场 demo |
| **3Brain (HD-MEA)** | 0 direct hits | — |
| **Cellink (BIO X)** | 0 direct hits | — |
| **西南医大 心研所 殴贤红** | 2 dealers: 成都百乐 (杨军, 钻石级 1亿, Bio-Rad / Sartorius / Oxford Nanopore / Cytek / Leica, 覆盖川渝黔藏) + 成都立德赛 (川渝云贵陕) | (待 Robin 决策) |
**Hook-4 questions** (Robin 优先补全, per `_known_associations.md`):
1. 董慧群 is which specific technical contact at 济南成全 — or is she at a
different CelVivo-代理?
2. 西南医大 殴贤红 → 成都百乐 vs 成都立德赛 — which dealer first?
3. 邓昊伦 (02-Contacts/) 蛇类神经方向 → 3Brain HD-MEA 拜访?
4. 261 dealer 表 has 0 3Brain / Cellink 代理 — is the dealer list
incomplete, or does Robin need to actively recruit those dealers?
Log these as a new commitment on `/commitments.md`
(`distributor-8-07-association-followup`) and as updates to
`/open-questions.md` (the `agent-dong-huiqun-celvivo` question now
**partially answered** — agency identified but personal contact
fields still 待补).
## Notable entities surfaced by the vault (structural hints only)
- **CelVivo industrial customers program** — a dedicated subfolder under
`05-Documents/Products/Celvivo/Industrial-Customers/` holds `CelVivo_中国工业
客户开发研究报告` (v1 + v2), `客户管线定位_1页图`, and `工业客户开发手册-v3`.
This is a self-contained CelVivo China commercial effort.
- **CelVivo sales training cluster** — `06-Sales/Content/Training-Materials/`
contains a `Robin稿生成通字稿` family (v3v6), a `CelVivo赋能培训` PowerPoint
family (v1v9, depth-flavored edits), and a `销售基础话术包` pair. Versions
progress from 基础 → 5大管线 → 深度版 → 终稿修正 → 销量仅看.
- **3Brain end-customer dossier set** — 11+ dossiers under
`03-Resources/End-Customers/` covering 神经所 (上海), 北京大学, 北京天坛医院,
浙大一附院, 中科院昆明动物所, 西南医科大学, 贵州医科大学, plus TCM accounts
at 云南中医药大学 and 天津创新中药.
- **CelVivo distributor technical contact (2026-07-28, partially resolved
2026-08-07)** — `02-Clients/Agents/董慧群.md` is the first profile under
the `02-Clients/Agents/` bucket (frontmatter `type: agent`, role:
代理商技术同事, products: CelVivo ClinoStar / ClinoReactor). The
2026-08-07 `_known_associations.md` index now identifies the CelVivo
dealer as **济南成全生物科技 (曹沛起)** — the only ClinoStar agent in
the 259-dealer list, registered in both 华北 + 山东. Robin still needs
to confirm: (a) is 董慧群 the same agency? (b) phone / WeChat / served
end-customers / opportunities. The agency-side gap is now closed.
- **ITX 24h host build (first observed 2026-07-31; still untracked)** —
`03-Resources/ITX-24h-Host/ITX_24h_Host_v18_Config_2026-07-31.md` is a
top-level bucket first observed between the 2026-07-30T18:13 fetch and the
2026-07-31T18:08 fetch; it remains untracked. Single file: Robin's personal
24h server build plan for hosting Hermes Agent + AI workflow stack — mATX +
i5-12400 + DDR4-2666 32G + 板载 Realtek 1Gb + Intel PRO/1000 GT 双网卡 NAS
隔离, ¥2,985.82, 10/11 parts arrived, planned hostnames/roles:
192.168.31.100 (主力机 SSH) vs 10.10.10.254 (RAGFlow / NAS RAGFlow API).
Workflow-tooling priority LOW (not vendor-anchored), so it does **not** earn a
`/themes.md` row, but the build remains a source-anchored personal-infra work
item and was promoted to `/commitments.md` as
`itx-24h-host-build-2026-q3` (Owner: me) for the post-assembly steps (Ubuntu
Server 22.04 install + 双网卡静态 IP + Hermes Agent install + 24h soak test).
- **Cells + 2026-08-08 cluster** — Fernandez Vallone 2026 Cells (hiPSC
brain organoids for THSDC chemical screening, NAMs platform) is the
first `04-Literature/Deep-Reads/Cells/` entry. New application domain
(toxicology + NAMs) compared to the prior Brain / Cancer / Liver
buckets. CelVivo + 3Brain application scenarios called out in tags.
- **Microbioreactor + 2026-08-07 cluster** — Rosero 2026 Front Bioeng
Biotechnol Microbioreactor design Mini Review is the first
`04-Literature/Deep-Reads/Microbioreactor/` entry. Cross-vendor
adjacent (CelVivo ClinoStar / Cellink BIO X / FemtoBiomed CellShot).
Landed in NocoDB `Robin_Picked_Papers` (PMID 42516424, Wiki.js ID
1696).
- **Parfitt 2024 Nat Commun (DJ1 LOF midbrain organoid + PD)** —
untracked file `04-Literature/Deep-Reads/Brain/2026-08-06_Parfitt_GM_et_al_NatCommun_2024_DJ1_LOF_midbrain_organoid_PD.md`
(15,972 bytes, mtime 2026-08-06). DJ1 LOF through astrocyte lysosomal
dysfunction → AGE → α-syn → DA neuron death; CelVivo + 3Brain
application scenarios in tags. Not yet on `main`; pending Robin
commit.
- **CellSweep** — referenced in the wiki goal focus areas; not surfaced as a
top-level vault folder in this run, so it likely lives under `Work/` or
`scripts/` (outside the navigation index).
## Synthesis policy for this source
- **This run (2026-08-08):** 1 new entry surfaced to `/commitments.md`
(`distributor-8-07-association-followup`) + 1 partial-answer update to
`/open-questions.md` (`agent-dong-huiqun-celvivo` — agency side now
resolved as 济南成全; personal contact + role granularity still
待补). The `/themes/05-robin-research.md` truth-of-vault snapshot
moves to the new HEAD `d7df3830` and the 2026-08-07 distributor map
baseline. The `/sources/distributors-china-2026.md` page absorbs the
259-dealer 8-07 baseline (replacing the 261-dealer 7-24 baseline
numbers) and the new `_known_associations.md` index.
- The vault is a knowledge base, not a live signal stream; durable
per-document synthesis (paper deep reads, sales scripts, customer
files) requires reading individual files, which is delegated to the
Hermes skill and RAGFlow.
- Future runs should keep this page structural. Promote a row to a canonical
theme only when the connector observes a recurring workflow (e.g. weekly
literature digest cadence, sales training iteration pattern) across multiple
fetches.
## Next update
Run `openwiki_ingest_connector connectorId=git-repo` (or
`openwiki personal --update`) to refresh. Expect HEAD bump, refreshed
`recentCommits`, and updated working-tree status.