chore: daily update 2026-08-19
This commit is contained in:
OpenWiki Bot
+192
-72
@@ -1,10 +1,10 @@
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---
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type: "Reference"
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title: "Git repo — evidence index (Obsidian vault, Robin)"
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description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD a4fa5a32, 2026-08-16, 7 new vault commits in the 2026-08-15T18:07Z → 2026-08-17T18:09Z 48-hour window) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD be49285, 2026-08-17). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
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description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD a4fa5a32, 2026-08-16, 7 new vault commits in the 2026-08-15T18:07Z → 2026-08-17T18:09Z 48-hour window; **0 new vault commits in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour window — vault is silent**) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 1fc73ae, 2026-08-18, **2 new automated wiki commits in the 2026-08-17T18:09Z → 2026-08-18T18:10Z window: `8127797` daily update 2026-08-18 + `1fc73ae` sources-sync 2026-08-18**). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
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resource: "~/.openwiki/connectors/git-repo/config.json"
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tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-17, 2026-08-15, 2026-08-13]
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timestamp: 2026-08-17T18:09:32Z
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tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-18, 2026-08-17, 2026-08-15, 2026-08-13]
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timestamp: 2026-08-18T18:10:12Z
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---
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# Git repo — evidence index (Obsidian vault + OpenWiki wiki)
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@@ -43,51 +43,62 @@ help locate things in the vault, not summarize their content.
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`5c70881` daily update also created the new `sources/openwiki-version-drift.md`
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auto-generated page).
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- **Auth:** local paths only — no remote, no credentials.
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- **Latest fetch:** `2026-08-17T18:09:32Z` (raw manifest
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`~/.openwiki/connectors/git-repo/raw/2026-08-17T18-09-32-895Z/manifest.json`).
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- **Latest fetch:** `2026-08-18T18:10:12Z` (raw manifest
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`~/.openwiki/connectors/git-repo/raw/2026-08-18T18-10-12-916Z/manifest.json`).
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- **Source config:** `~/.openwiki/connectors/git-repo/config.json`
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- **State:** `~/.openwiki/connectors/git-repo/state.json` records
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`latestIds` per repo; the 2026-08-17 fetch observed vault HEAD
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bumped from `297f106d` (2026-08-15 fetch) to `a4fa5a32` (7 new
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vault commits in the 48-hour window) and bumped `openwiki-wiki`
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from `2507925` (2026-08-15 fetch) to `be49285` (4 new wiki commits
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in the same 48-hour window, plus 1 new wiki-side file
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`sources/openwiki-version-drift.md`).
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`latestIds` per repo; the 2026-08-18T18:10Z fetch observed vault HEAD
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unchanged at `a4fa5a32` (2026-08-16 — same as the 2026-08-17T18:09Z
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fetch; **0 new vault commits in the 24-hour window**), and observed
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`openwiki-wiki` bumped from `be49285` (2026-08-17T18:09Z fetch) to
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`1fc73ae` (2 new automated wiki commits in the 24-hour window:
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`8127797` daily update 2026-08-18 + `1fc73ae` sources-sync
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2026-08-18).
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## obsidian-vault — working-tree status (2026-08-17)
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## obsidian-vault — working-tree status (2026-08-18)
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- **Branch:** `main`
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- **HEAD:** `a4fa5a323d6dcabeb9eccad49e636ee6ba5f87a6` (vault HEAD
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**bumped** from `297f106d` across the 2026-08-17 fetch — **7 new
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commits** in the 2026-08-15T18:07Z → 2026-08-17T18:09Z 48-hour
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window: the 2026-08-16 **Quintard 2024 Nat Commun 4-commit LDR cycle**
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+ the 2026-08-16 **Guo 2026 Front Cell Dev Biol 3-commit LDR cycle**.
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Two new paper LDR cycles in the same 48-hour window is the first time
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this pattern has occurred since the 2026-07-28 / 2026-07-29 Parate /
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Lee / Hodge cluster).
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- **Ahead of origin/main:** 20 commits new since 2026-08-03 fetch (was
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13 at the 2026-08-15 fetch; the +7 delta is the Quintard 2024 +
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Guo 2026 clusters).
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- **Dirty:** yes — the untracked file set **+2 new entries** in the
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2026-08-17 48-hour window: `celvivo_commercial/1331651_20260630_131201.pdf`
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(the 6-30 quote PDF, moved into a new folder) + `templates/类器官IRB申请清单.md`
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(the IRB application checklist derived from Guo 2026; 180 lines; 7
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mandatory points + 5 customer Q&A + China vs International flow + 10
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attachments; Robin's first customer-facing template derived from a
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single deep-read). The carry-forward untracked set is unchanged: 8
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× `02-Clients/Agents/区域-2026-0807.md` distributor-rebuild files
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(per the 2026-08-07 Hermes hook 4 sweep) + the existing 14 working-
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folder files (Parfitt 2024 DJ1 LOF midbrain + Liu2026 / Miao2025 v2 /
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Miao2025 vascularized / Microbioreactor 2026 / `__pycache__/literature_deepread_v6.cpython-312.pyc`
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/ `dify精读进度-20260805.md` / `literature_deepread_v6.py` /
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**unchanged** at `a4fa5a32` across the 2026-08-18T18:10Z fetch — **0
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new commits** in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour
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window. The 2026-08-16 Quintard 2024 Nat Commun 4-commit LDR cycle +
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Guo 2026 Front Cell Dev Biol 3-commit LDR cycle remain the most
|
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recent committed vault activity (vault HEAD last bumped on
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2026-08-16, 2 calendar days before this fetch — same state as the
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2026-08-17T18:09Z fetch)).
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- **mtime activity in window:** **0 new mtime changes** in the
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2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour window. The 2
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untracked dirs from the 2026-08-17T18:09Z fetch are unchanged:
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`celvivo_commercial/` last touched 2026-08-17 15:04 +0800 (= 07:04
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UTC, **before** the 24h window) + `templates/` last touched
|
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2026-08-16 10:27 +0800 (= 02:27 UTC, well before the window). The
|
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`Review/zhou2023_computer_vision_microfluidics.md` first-entry
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file is unchanged from the 2026-08-17T18:09Z fetch (mtime
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2026-08-11, **7-day carry-forward** in the untracked set; the
|
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structural signal continues to weaken per the Notable-entity entry
|
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on the `Review/` subfolder).
|
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- **Ahead of origin/main:** 20 commits new since 2026-08-03 fetch (unchanged from the 2026-08-17T18:09Z fetch — vault is silent in the 2026-08-17T18:09Z → 2026-08-18T18:10Z window).
|
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- **Dirty:** yes — the untracked file set is **unchanged** from the
|
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2026-08-17T18:09Z fetch (no new untracked files or directories
|
||||
appeared in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour
|
||||
window). The 25+ untracked entries from the 2026-08-17T18:09Z fetch
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carry forward unchanged: 8 × `02-Clients/Agents/区域-2026-0807.md`
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distributor-rebuild files (per the 2026-08-07 Hermes hook 4 sweep)
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+ 14 working-folder files (Parfitt 2024 DJ1 LOF midbrain + Liu2026
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/ Miao2025 v2 / Miao2025 vascularized / Microbioreactor 2026 /
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`__pycache__/literature_deepread_v6.cpython-312.pyc` /
|
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`dify精读进度-20260805.md` / `literature_deepread_v6.py` /
|
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`obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`
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/ `obsidian-vault/rustdesk-selfhosted-2026-08-05.md` /
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`retinal_organoid_deep_read_2026-08-07.md` / `文悦精读流水线.yml` + v2/v3/v4/v5-clean
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variants). The **`Review/zhou2023_computer_vision_microfluidics.md`
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||||
`retinal_organoid_deep_read_2026-08-07.md` / `文悦精读流水线.yml` +
|
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v2/v3/v4/v5-clean variants) + 2 new untracked working-tree
|
||||
directories from the 2026-08-17T18:09Z fetch (`celvivo_commercial/`
|
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+ `templates/`). The **`Review/zhou2023_computer_vision_microfluidics.md`
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first entry in the new `Review/` subfolder** is still **untracked**
|
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(Robin has not yet committed it) — the structural signal carried
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forward from the 2026-08-13 fetch and is **now joined** by 2 new
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untracked working-tree directories (`celvivo_commercial/` + `templates/`).
|
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(Robin has not yet committed it) — **7-day carry-forward** at this
|
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fetch; the structural signal continues to weaken per the
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Notable-entity entry on the `Review/` subfolder (the subfolder has
|
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been a single-entry watchlist since 2026-08-13).
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- **Working-tree status (raw manifest, abbreviated):**
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| Status | Path |
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@@ -297,59 +308,98 @@ indexed on [`/sources/literature.md`](/sources/literature.md). The
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`1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran
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on the same paper.
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## openwiki-wiki — working-tree status (2026-08-17)
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## openwiki-wiki — working-tree status (2026-08-18)
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- **Branch:** `main`
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- **HEAD:** `be4928553364a654b888807a44438b738072c2ce` (the
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- **HEAD:** `1fc73aeeff541a9f0079ace0fd2d3206ee639193` (the
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`chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts
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(sources-sync 2026-08-17)` commit — same auto-source-sync job that
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carried the 2026-08-15 count-data wipe; see Notable-entity §
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"2026-08-15 sources-sync bug" for the operational note).
|
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(sources-sync 2026-08-18)` commit — same auto-source-sync job that
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carried the 2026-08-15 count-data wipe + re-applied the pattern on
|
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2026-08-16 + 2026-08-17 + now 2026-08-18; see Notable-entity §
|
||||
"2026-08-15 sources-sync bug" for the operational note). The
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2026-08-18T18:10Z fetch observed wiki HEAD bumped from `be49285`
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(2026-08-17T18:09Z fetch) to `1fc73ae` — **2 new automated wiki
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commits** in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour
|
||||
window: (a) `8127797` chore: daily update 2026-08-18 (2026-08-18
|
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02:23 +0800); (b) `1fc73ae` chore(sources): refresh
|
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NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-18,
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2026-08-18 02:30 +0800). Both commits are routine auto-orchestration
|
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— the `8127797` daily update carried the synthesis-layer edits from
|
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the prior HN-1 2026-08-18T18:00Z run + this git-repo-1 2026-08-17T18:09Z
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run; the `1fc73ae` sources-sync re-applied the count-data wipe
|
||||
pattern on NocoDB / SeaFile / Wiki.js / RAGFlow for the **fourth**
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consecutive time.
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- **Working-tree state:** 9 modified files (uncommitted — pending next
|
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CLI orchestration), **down from 10 at the 2026-08-15 fetch**
|
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(the `sources/index.md` from the 2026-08-15 dirty set was committed
|
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in the 2026-08-16 daily update `151d22b`). The 9 dirty files are:
|
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CLI orchestration), **unchanged from the 2026-08-17T18:09Z fetch**
|
||||
(the `8127797` 2026-08-18 daily update committed some synthesis
|
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edits but the working tree still shows 9 uncommitted files because
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the very next synthesis edits from this git-repo-1 2026-08-18T18:10Z
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||||
run re-touch the same files). The 9 dirty files are:
|
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- `.last-update.json` — CLI metadata, will be updated when this run's
|
||||
`status: complete` lands.
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- `quickstart.md` — contains the accumulated "Latest update"
|
||||
paragraphs from the prior HN-1 2026-08-15 + web-search-1 2026-08-15
|
||||
+ git-repo-1 2026-08-13 runs, plus the new "Latest update —
|
||||
git-repo-1 (2026-08-15T18:07Z)" paragraph this run is adding.
|
||||
+ git-repo-1 2026-08-13 runs, plus the "Latest update —
|
||||
git-repo-1 (2026-08-15T18:07Z)" paragraph added by the
|
||||
2026-08-15T18:07Z git-repo run, plus the "Latest update —
|
||||
git-repo-1 (2026-08-17T18:09Z)" paragraph added by the
|
||||
2026-08-17T18:09Z git-repo run; this git-repo-1 2026-08-18T18:10Z
|
||||
run adds the "Latest update — git-repo-1 (2026-08-18T18:10Z)"
|
||||
paragraph and updates the Backlog git-repo entry to reflect the
|
||||
new wiki HEAD `1fc73ae`.
|
||||
- `sources/README.md` — refreshed connector-roll table row for
|
||||
web-search-1 (added the 2026-08-15 skip to the 4-entry skip streak)
|
||||
+ added frontmatter placeholders to nocodb.md / ragflow.md /
|
||||
seafile.md / wikijs.md during the 2026-08-15 daily update.
|
||||
- `sources/hackernews.md` — accumulated "Latest update —
|
||||
2026-08-15 18:00 UTC" + "Latest update — 2026-08-16 18:00 UTC" +
|
||||
"Latest update — 2026-08-17 18:00 UTC" sections from the prior
|
||||
HN-1 2026-08-15 + HN-1 2026-08-16 + HN-1 2026-08-17 runs
|
||||
"Latest update — 2026-08-17 18:00 UTC" + "Latest update —
|
||||
2026-08-18 18:00 UTC" sections from the prior HN-1 2026-08-15 +
|
||||
HN-1 2026-08-16 + HN-1 2026-08-17 + HN-1 2026-08-18 runs
|
||||
(Auto-research with codex 232x Faster Kernel + Anthropic multi-agent
|
||||
+ Stripe/OpenRouter + Copilot Autofix + Qwen 3.8 27B + Agent Mesh
|
||||
flag-for-traceability callouts + the 4th / 5th / 6th consecutive
|
||||
empty / noise-only Algolia lane streak notes) — landed in
|
||||
uncommitted state during the HN-1 runs.
|
||||
+ Stripe/OpenRouter + Copilot Autofix + Qwen 3.8 27B + Agent Mesh +
|
||||
machine0 YC S26 + Amazon order emails AI-agent data
|
||||
flag-for-traceability callouts + the 4th / 5th / 6th / 7th
|
||||
consecutive empty / noise-only Algolia lane streak notes) — landed
|
||||
in uncommitted state during the HN-1 runs.
|
||||
- `sources/nocodb.md` — `openwiki_generated: true` placeholder
|
||||
frontmatter auto-applied during the 2026-08-15 daily update +
|
||||
carried forward in 2026-08-16 + 2026-08-17 daily updates; **count
|
||||
data wiped** by `2507925` 2026-08-15 sources-sync (NocoDB went
|
||||
from 6614 → 0 records).
|
||||
carried forward in 2026-08-16 + 2026-08-17 + 2026-08-18 daily
|
||||
updates; **placeholder resolved by the 2026-08-18T18:10Z update
|
||||
run** (proper `type` / `title` / `description` / `tags` frontmatter
|
||||
now in place); **count data wiped** by `2507925` 2026-08-15
|
||||
sources-sync (NocoDB went from 6614 → 0 records) and the wipe
|
||||
persists across the 3 subsequent sources-syncs (`997b648` 2026-08-16
|
||||
+ `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 — the count stays at
|
||||
0 across all 4 sources-syncs); body content (13 literature tables +
|
||||
record counts from `1737454` baseline) remains intact.
|
||||
- `sources/ragflow.md` — same `openwiki_generated: true` placeholder
|
||||
auto-applied during the 2026-08-15 daily update; **count data
|
||||
wiped** by `2507925` 2026-08-15 sources-sync (landing went from
|
||||
200 → 000).
|
||||
auto-applied during the 2026-08-15 daily update;
|
||||
**placeholder resolved by the 2026-08-18T18:10Z update run**
|
||||
(proper `type` / `title` / `description` / `tags` frontmatter now
|
||||
in place); **count data wiped** by `2507925` 2026-08-15
|
||||
sources-sync (landing went from 200 → 000); body content (14 KBs +
|
||||
service-availability table + degraded-path note) remains intact.
|
||||
- `sources/seafile.md` — same `openwiki_generated: true` placeholder
|
||||
auto-applied during the 2026-08-15 daily update; **count data
|
||||
wiped** by `2507925` 2026-08-15 sources-sync (libraries table
|
||||
emptied — SeaFile was already empty in `1737454` already — a
|
||||
separate, older cron issue not introduced by `2507925`).
|
||||
auto-applied during the 2026-08-15 daily update;
|
||||
**placeholder resolved by the 2026-08-18T18:10Z update run**
|
||||
(proper `type` / `title` / `description` / `tags` frontmatter now
|
||||
in place); **count data wiped** by `2507925` 2026-08-15
|
||||
sources-sync (libraries table emptied — SeaFile was already empty
|
||||
in `1737454` already — a separate, older cron issue not introduced
|
||||
by `2507925`); body content (API config + integration chain) remains
|
||||
intact.
|
||||
- `sources/web-search.md` — accumulated "2026-08-15 attempted
|
||||
update — skipped" + "2026-08-17 attempted update — skipped"
|
||||
sections from the web-search-1 2026-08-15 + 2026-08-17 runs
|
||||
(5th + 6th consecutive skips on the same code path).
|
||||
update — skipped" + "2026-08-17 attempted update — skipped" +
|
||||
"2026-08-18 attempted update — skipped" sections from the
|
||||
web-search-1 2026-08-15 + web-search-1 2026-08-17 + web-search-1
|
||||
2026-08-18 runs (5th + 6th + 7th consecutive skips on the same
|
||||
code path).
|
||||
- `sources/wikijs.md` — same `openwiki_generated: true` placeholder
|
||||
auto-applied during the 2026-08-15 daily update; **count data
|
||||
wiped** by `2507925` 2026-08-15 sources-sync (Wiki.js went from
|
||||
83 → 0 unique pages; ID range 22..1704 → 0..0).
|
||||
83 → 0 unique pages; ID range 22..1704 → 0..0) and the wipe
|
||||
persists across the 3 subsequent sources-syncs.
|
||||
- **Auth:** local path only — no remote, no credentials.
|
||||
- **New file in this window:** `sources/openwiki-version-drift.md`
|
||||
was created in the 2026-08-17 daily update commit `5c70881` (auto-
|
||||
@@ -363,6 +413,8 @@ on the same paper.
|
||||
|
||||
| Date | Hash | Note |
|
||||
| --- | --- | --- |
|
||||
| 2026-08-18 | `1fc73ae` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-18) — **count-data wipe re-applied** for the **fourth** consecutive sources-sync (after 2026-08-15 `2507925` + 2026-08-16 `997b648` + 2026-08-17 `be49285`); see Notable-entity § "2026-08-15 sources-sync bug" |
|
||||
| 2026-08-18 | `8127797` | chore: daily update 2026-08-18 (synthesis-layer edits accumulated from the prior HN-1 2026-08-18T18:00Z + git-repo-1 2026-08-17T18:09Z runs + the new `sources/openwiki-version-drift.md` carryover) |
|
||||
| 2026-08-17 | `be49285` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-17) |
|
||||
| 2026-08-17 | `5c70881` | chore: daily update 2026-08-17 (added `sources/openwiki-version-drift.md` auto-generated page + refreshed HN-1 / web-search-1 / git-repo-1 sections) |
|
||||
| 2026-08-16 | `997b648` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-16) |
|
||||
@@ -436,9 +488,10 @@ pipeline catches up.
|
||||
| Window (UTC) | Vault | Wiki |
|
||||
| --- | --- | --- |
|
||||
| 2026-08-15T18:07:49Z → 2026-08-17T18:09:32Z | HEAD `297f106d` → `a4fa5a32` (**7 new commits**: `0fc8db24` + `290e9635` + `24c713de` + `4073abf4` Quintard 2024 Nat Commun microfluidic vascularized organoid chip 4-commit LDR cycle + `2e6f5989` + `00f824f2` + `a4fa5a32` Guo 2026 Front Cell Dev Biol organoid ethics systematic review 3-commit LDR cycle — **first time since the 2026-07-28 / 2026-07-29 Parate / Lee / Hodge cluster that two new paper deep-reads landed on `main` in the same 48-hour window**) | HEAD `2507925` → `be49285` (**4 new commits**: `151d22b` daily update 2026-08-16 + `997b648` sources-sync 2026-08-16 + `5c70881` daily update 2026-08-17 + `be49285` sources-sync 2026-08-17) |
|
||||
| **Net new external evidence** | **2 new paper deep-reads**: Quintard 2024 Nat Commun microfluidic vascularized organoid chip + Guo 2026 Front Cell Dev Biol organoid ethics systematic review. **2 new untracked directories**: `celvivo_commercial/1331651_20260630_131201.pdf` (the 6-30 quote PDF migrated into a new folder) + `templates/类器官IRB申请清单.md` (the IRB application checklist derived from Guo 2026 — Robin's first customer-facing sales ammunition template produced from a single deep-read). The `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder is still untracked, carrying forward from the 2026-08-13 fetch | **1 new wiki file**: `sources/openwiki-version-drift.md` (auto-generated OpenWiki version-drift monitor; v0.3.1 local → v0.3.3 npm latest as of 2026-08-15T20:00:03Z). Synthesis-layer edits accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + HN-1 2026-08-16 + HN-1 2026-08-17 + web-search-1 2026-08-15 + web-search-1 2026-08-17 + git-repo-1 2026-08-13 + git-repo-1 2026-08-15 runs are pending the next CLI commit cycle |
|
||||
| Untracked → committed migrations | **Quintard 2024 file (4 commits)** + **Guo 2026 file (3 commits)** all moved from absent → committed on `main`; **the 2 new untracked directories** are net-new in this window | **none** of the 9 dirty files were committed in this window (the `sources/index.md` from the 2026-08-15 dirty set was committed by the 2026-08-16 daily update `151d22b`; the remaining 9 dirty files are uncommitted synthesis edits accumulated across the prior HN-1 + web-search-1 + git-repo-1 runs); the 9 dirty files (`.last-update.json` + `quickstart.md` + `sources/{README,hackernews,nocodb,ragflow,seafile,web-search,wikijs}.md`) are awaiting the next CLI commit cycle |
|
||||
| **Operational issue carried over from prior runs** | n/a | **`2507925` 2026-08-15 sources-sync bug** + the 2026-08-16 `997b648` + 2026-08-17 `be49285` sources-syncs (which re-applied the same operational pattern as `2507925` — NocoDB / Wiki.js / RAGFlow count values stayed zero across all 3 sources-syncs). The on-disk `~/.openwiki/connectors/web-search/config.json` is unaffected — this is a wiki-side CRON issue with the auto-source-sync job, not a connector config issue. Recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page. The data is recoverable from `git show 8ddc6d9:sources/nocodb.md` etc. for any future recovery commit |
|
||||
| 2026-08-17T18:09:32Z → 2026-08-18T18:10:12Z | HEAD **unchanged** at `a4fa5a32` (**0 new commits**, **0 new mtime changes** — vault is silent in this 24-hour window; the 2026-08-16 Quintard 2024 + Guo 2026 cluster remains the most recent vault activity) | HEAD `be49285` → `1fc73ae` (**2 new automated commits**: `8127797` chore: daily update 2026-08-18 + `1fc73ae` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-18, the **fourth** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern)) |
|
||||
| **Net new external evidence** | **2 new paper deep-reads**: Quintard 2024 Nat Commun microfluidic vascularized organoid chip + Guo 2026 Front Cell Dev Biol organoid ethics systematic review. **2 new untracked directories**: `celvivo_commercial/1331651_20260630_131201.pdf` (the 6-30 quote PDF migrated into a new folder) + `templates/类器官IRB申请清单.md` (the IRB application checklist derived from Guo 2026 — Robin's first customer-facing sales ammunition template produced from a single deep-read). The `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder is still untracked, carrying forward from the 2026-08-13 fetch | **1 new wiki file** (carried from 2026-08-17): `sources/openwiki-version-drift.md` (auto-generated OpenWiki version-drift monitor; v0.3.1 local → v0.3.3 npm latest as of 2026-08-15T20:00:03Z). Synthesis-layer edits accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + HN-1 2026-08-16 + HN-1 2026-08-17 + HN-1 2026-08-18 + web-search-1 2026-08-15 + web-search-1 2026-08-17 + web-search-1 2026-08-18 + git-repo-1 2026-08-13 + git-repo-1 2026-08-15 + git-repo-1 2026-08-17 + git-repo-1 2026-08-18 runs are pending the next CLI commit cycle |
|
||||
| Untracked → committed migrations | **Quintard 2024 file (4 commits)** + **Guo 2026 file (3 commits)** all moved from absent → committed on `main`; **the 2 new untracked directories** are net-new in the 2026-08-15 → 2026-08-17 window. **None** in the 2026-08-17 → 2026-08-18 window (vault silent). | **2026-08-15 → 2026-08-17 window**: **none** of the 9 dirty files were committed in this window (the `sources/index.md` from the 2026-08-15 dirty set was committed by the 2026-08-16 daily update `151d22b`; the remaining 9 dirty files are uncommitted synthesis edits accumulated across the prior HN-1 + web-search-1 + git-repo-1 runs). **2026-08-17 → 2026-08-18 window**: the `8127797` 2026-08-18 daily update committed a subset of the synthesis-layer edits from the prior HN-1 2026-08-18T18:00Z + git-repo-1 2026-08-17T18:09Z runs (touching `commitments.md` + `index.md` + `quickstart.md` + `sources/{README,git-repo,hackernews,index,literature,nocodb,ragflow,seafile,web-search,wikijs}.md` + `themes/{01-organoid-equipment,05-robin-research}.md` per `git show --stat 8127797`); the 9 dirty files (`.last-update.json` + `quickstart.md` + `sources/{README,hackernews,nocodb,ragflow,seafile,web-search,wikijs}.md`) re-appear in the working tree because the very next synthesis edits from this git-repo-1 2026-08-18T18:10Z run re-touch the same files. The 9 dirty files are awaiting the next CLI commit cycle |
|
||||
| **Operational issue carried over from prior runs** | n/a | **`2507925` 2026-08-15 sources-sync bug** + the 2026-08-16 `997b648` + 2026-08-17 `be49285` + 2026-08-18 `1fc73ae` sources-syncs (which re-applied the same operational pattern as `2507925` — NocoDB / Wiki.js / RAGFlow count values stayed zero across all **4** sources-syncs). The on-disk `~/.openwiki/connectors/web-search/config.json` is unaffected — this is a wiki-side CRON issue with the auto-source-sync job, not a connector config issue. Recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page. The data is recoverable from `git show 8ddc6d9:sources/nocodb.md` etc. for any future recovery commit |
|
||||
|
||||
## Vault navigation index
|
||||
|
||||
@@ -645,6 +698,72 @@ fields still 待补).
|
||||
|
||||
## Synthesis policy for this source
|
||||
|
||||
- **This run (2026-08-18, git-repo-1 18:10Z):** **0 new vault commits**
|
||||
in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour window — the
|
||||
vault HEAD is **unchanged at `a4fa5a32`** (the 2026-08-16 Quintard
|
||||
2024 Nat Commun 4-commit LDR cycle + Guo 2026 Front Cell Dev Biol
|
||||
3-commit LDR cycle remain the most recent vault activity, 2 calendar
|
||||
days stale at this fetch). **0 new vault mtime changes** — the 2
|
||||
untracked directories (`celvivo_commercial/` + `templates/`) and the
|
||||
23+ untracked files from the 2026-08-17T18:09Z fetch carry forward
|
||||
unchanged. The `Review/zhou2023_computer_vision_microfluidics.md`
|
||||
first-entry in the new `Review/` subfolder is **7-day carry-forward**
|
||||
at this fetch (uncommitted since 2026-08-11); the structural signal
|
||||
for `Review/` continues to weaken per the Notable-entity entry (the
|
||||
subfolder has been a single-entry watchlist since 2026-08-13).
|
||||
Wiki-side: **2 new automated wiki commits** landed in the 24-hour
|
||||
window — `8127797` chore: daily update 2026-08-18 (2026-08-18
|
||||
02:23 +0800) + `1fc73ae` chore(sources): refresh
|
||||
NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-18,
|
||||
2026-08-18 02:30 +0800) — advancing wiki HEAD from `be49285`
|
||||
(2026-08-17T18:09Z fetch) to `1fc73ae`. Both commits are routine
|
||||
auto-orchestration: (a) the `8127797` daily update carried the
|
||||
synthesis-layer edits from the prior HN-1 2026-08-18T18:00Z run +
|
||||
this git-repo-1 2026-08-17T18:09Z run (touching `commitments.md` +
|
||||
`index.md` + `quickstart.md` + `sources/{README,git-repo,hackernews,index,literature,nocodb,ragflow,seafile,web-search,wikijs}.md`
|
||||
+ `themes/{01-organoid-equipment,05-robin-research}.md` per
|
||||
`git show --stat 8127797`); (b) the `1fc73ae` sources-sync
|
||||
re-applied the count-data wipe pattern on NocoDB / SeaFile / Wiki.js
|
||||
/ RAGFlow for the **fourth** consecutive sources-sync (after
|
||||
2026-08-15 `2507925` + 2026-08-16 `997b648` + 2026-08-17 `be49285`).
|
||||
**No new external evidence** in this run (vault silent), **no
|
||||
new theme row**, **no new commitment row**, **no new open-question
|
||||
row**, **no new personal-logistics item** — the synthesis layer
|
||||
is unchanged. Wiki edits this run: (a) `/sources/git-repo.md` (this
|
||||
page) — refreshed frontmatter HEAD pointers (vault HEAD unchanged at
|
||||
`a4fa5a32`, wiki HEAD `be49285` → `1fc73ae`, tags + `2026-08-18`,
|
||||
timestamp → `2026-08-18T18:10:12Z`), refreshed the Connector /
|
||||
State section to the new `2026-08-18T18-10-12-916Z` raw manifest,
|
||||
refreshed the obsidian-vault working-tree-status section to
|
||||
2026-08-18 (0 new commits, 0 new mtime changes, untracked set
|
||||
unchanged), refreshed the openwiki-wiki working-tree-status section
|
||||
to 2026-08-18 (2 new automated wiki commits + the carry-forward 9
|
||||
uncommitted synthesis-layer edits), added 2 new entries at the top
|
||||
of the Recent-commits-for-wiki table (`1fc73ae` + `8127797`),
|
||||
refreshed the Summary-of-last-48-hours table to add the
|
||||
2026-08-17T18:09Z → 2026-08-18T18:10Z window data (0 vault commits /
|
||||
2 wiki commits / operational row noting the **fourth** consecutive
|
||||
sources-sync re-applying the count-data wipe pattern), refreshed
|
||||
the Synthesis-policy section with this run's delta summary; (b)
|
||||
`/themes/05-robin-research.md` — vault-snapshot metadata refreshed
|
||||
(fetch timestamp → `2026-08-18T18:10:12Z`, raw-manifest path → the
|
||||
new `2026-08-18T18-10-12-916Z` manifest); the vault HEAD pointer
|
||||
stays `a4fa5a32` (unchanged across both 2026-08-17 and 2026-08-18
|
||||
fetches); (c) `/quickstart.md` — added the "Latest update —
|
||||
git-repo-1 (2026-08-18T18:10Z)" paragraph; updated the Backlog
|
||||
git-repo entry to reflect the new wiki HEAD `1fc73ae` + 2 new
|
||||
automated wiki commits + the carry-forward 9 uncommitted files +
|
||||
the **fourth** consecutive sources-sync note. **No `/themes.md` row
|
||||
change, no `/commitments.md` row, no `/open-questions.md` row, no
|
||||
`/personal-logistics.md` item** — the vault delta is empty and the
|
||||
wiki delta is automated maintenance only. The "vault is silent on
|
||||
a 24-hour window" pattern continues to be normal cadence for Robin's
|
||||
workflow (the 2026-08-13 fetch was also a 0-new-vault-commits
|
||||
daily-cycle follow-up; the 2026-08-15 fetch was also a 0-new-vault-
|
||||
commits daily-cycle follow-up). The synthesis layer (themes /
|
||||
commitments / open-questions / personal-logistics) is independent
|
||||
of the wiki-side automated maintenance commits.
|
||||
|
||||
- **This run (2026-08-17, git-repo-1 18:09Z):** **7 new vault commits**
|
||||
landed in the 2026-08-15T18:07Z → 2026-08-17T18:09Z window — the vault
|
||||
HEAD bumped from `297f106d` (the 2026-08-12 Liang 2026 cluster) to
|
||||
@@ -866,3 +985,4 @@ fields still 待补).
|
||||
Run `openwiki_ingest_connector connectorId=git-repo` (or
|
||||
`openwiki personal --update`) to refresh. Expect HEAD bump, refreshed
|
||||
`recentCommits`, and updated working-tree status.
|
||||
rking-tree status.
|
||||
|
||||
Reference in New Issue
Block a user