chore: daily update 2026-09-14

sources/index.md

@@ -4,8 +4,8 @@
 - [Agents 代理商档案索引 — 跨 agent CRM 同步](agents.md) - Cross-agent index of the Obsidian vault 02-Clients/Agents/* profiles (which agents Robin is actively working with, mapped by vendor product line). Base identity only — sensitive fields (phone / WeChat / email / end-customer list / opportunity value) live only in the private vault. Updated 2026-08-07 with _known_associations.md product-line → agent → end-customer mapping.
 - [全国经销商地图 (2026-08-07 时点)](distributors-china-2026.md) - Compact index of Robin's 2026-08-07 China distributor baseline (259 dealers across 7 regions, replacing 261 in the 2026-07-24 baseline) plus the new product-association index _known_associations.md. Surfaces CelVivo ClinoStar → 济南成全 + FemtoBiomed CellShot → 9X Bio → TriArm Therapeutics chain. Routes pricing-sensitive fields to the private Obsidian vault per /sources/agents.md privacy rule.
 - [飞书邮箱 (Robin customer mailbox)](feishu-mail.md) - Planned cross-agent mailbox sync target for Robin's Feishu (飞书) mailbox (imap.feishu.cn:993 / imap.larksuite.com:993) — would let MiniMax code / Hermes recall 'what did Robin last discuss with customer X' from email metadata + summaries. Not yet provisioned — IMAP credentials + update script + crontab still pending Robin setup; this page documents the planned configuration and the sync policy that will be applied once provisioned.
-- [Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff`, 2026-09-11, **vault HEAD bumped `391e4713` → `09bec367`** in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window, **vault silence streak BROKEN after 11 calendar days** — **2 new vault commits** since the 2026-08-31T18:09Z THIRD consecutive 5-paper CelVivo LDR cluster: `1fd63019` 2026-09-10 `feat(literature): Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read` adding `04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md` (Western University HGSC ovarian-cancer precision-medicine deep-read, **0 vendor callouts**, `?? 0` per vendor-mapping discipline, no 3Brain reference per SOP cleanup rule) + `09bec367` 2026-09-11 `literature: 精读 NocoDB Id=3029 Air-liquid interface-centered oxygen engineering in human br (飞轮 v4 自动 sink)` adding `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md` (brain-organoid ALI oxygen engineering — first paper routed through the v4 Flywheel auto-sink pipeline)); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 29 → **30-day carry-forward** (27 → **28 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 24 → **25-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + **2026-09-11** fetches), `deepread_40240593/` 17 → **18-day carry-forward** (mtime unchanged across **17 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `55d930ffbc0a658aa335683f0d412496b32af549`, 2026-09-11, **4 new automated wiki commits in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window: `299eeab` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `7e2072c` 2026-09-09 + `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15) committed `sources/{nocodb,ragflow,seafile,wikijs}.md`, then `1e6a7cb` chore: daily update 2026-09-10 (per `git show --stat 1e6a7cb` the commit touched 14 files including `.last-update.json` + `open-questions.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md`), then `2bf104e` chore: daily update 2026-09-11 (per `git show --stat 2bf104e` the commit touched 12 files including `.last-update.json` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + additional files), then `55d930f` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern); the very next synthesis edits from the HN-1 2026-09-11 + web-search-1 2026-09-11 (skipped) + this git-repo-1 2026-09-11T18:14Z run re-touched files leaving the dirty count at **10 per the manifest `changedFiles` list** — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` — **same shape as the 2026-09-10T18:19Z fetch (10-dirty-file baseline)** because the `55d930f` sources-sync on 2026-09-11 re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) that the prior daily updates had cleared via commit, plus the CLI metadata cycle re-touched `index.md` + `quiLine truncated
-?: 0` — appears to be a stray test artifact, no synthesis relevance)**.**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
+- [Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. **Latest fetch (2026-09-13T18:08Z — 31st git-repo-1 fetch since 2026-08-07): vault HEAD unchanged at `09bec367` for the 2nd consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption; wiki HEAD bumped `55d930f` → `5f33bd3` via 4 new automated wiki commits (`7cfb801` sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync + `999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 + `5f33bd3` sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync); 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800); 8-dirty-file baseline (down from 10-dirty at the 2026-09-11 fetch); carry-forward bump 30/25/25/18 → 32/27/27/20-day.** Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `09bec367`, 2026-09-11, vault silence streak BROKEN after 11 calendar days with 2 new commits — Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering, the first v4 Flywheel auto-sink pipeline entry); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `5f33bd3`, 2026-09-13, bumped from `55d930f` via 4 automated commits in the 48-hour window — `7cfb801` sources-sync twenty-ninth + `999a37d` daily update + `0447186` daily update + `5f33bd3` sources-sync thirtieth). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
+
 - [Hacker News — evidence index](hackernews.md) - Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items.
 - [文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件)](ldr-report-template.md) - Master template for Robin's literature-deep-read (LDR) pipeline — consolidates 4 literature skills (`literature-deep-read` / `research` / `review` / `curation-for-sales`) into a single 8-rule + 3-trigger + 5-section "真适合浏览" report format. Synthesized from 4-27 SOP范本 + 7-27 实战 lessons (Tasevska / Raji / Bosnjakovic). Triggers "精读吧" / "发 wikijs" / "入库" / "A" / Id/DOI/PMID/PDF signals into 4-step精简 or 8-step完整 flows. PDF全文必传 + PyMuPDF xref去重 + 9项强制 + SeaFile hostname `fb.biokingdom.top` + NocoDB v1 JSON + 3张真图 + `journal-year-topic` 报告路径.
 - [Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)](literature-cel-bosnjakovic-2025-pah-deepread.md) - Deep-read synthesis of Bosnjakovic A et al. 2025 bioRxiv preprint (DOI 10.1101/2025.07.10.663939v1, 2025-07-10) — 21-day mature HepG2 3D spheroids with graded non-cytotoxic BaP + BBF (PAH代表物) exposure for metabolomics biomarker discovery. Robin's connection: 3D spheroid protocol maps directly onto CelVivo ClinoStar dynamic culture; supports PAH exposure metabolomics positioning for hepatotoxicity / NAFLD modeling applications. 精读 2026-07-27.
@@ -16,15 +16,15 @@
 - [Sharma 2026 — vascularized retinal organoid RGC survival and maturation (Cell Stem Cell)](literature-sharma-2026-cell-stem-cell-vascularized-retinal-organoid-rgc-deepread.md) - Deep-read synthesis of Sharma K et al. (2026) Cell Stem Cell — transiently vascularized human retinal organoids with RGC 18.2% vs ctrl-RO 1.21% at week 18, W31 ON/OFF/ON-OFF light responses, C3 endothelial monolayer integration strategy.
 - [3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)](literature-tasevska-2025-deepread.md) - Deep-read synthesis of Tasevska T et al. 2025 European Journal of Pharmaceutical Sciences 206:106998 (DOI 10.1016/j.ejps.2024.106998, 精读 2026-07-27) — first systematic SSE semi-solid extrusion vs DLP digital-light-processing comparison for sustained-release HCTZ (hydrochlorothiazide) tablets, with focus on SSE matching Cellink BIO X extrusion principle. Supports Robin's 3D-printed personalized-dose / sustained-release positioning and SSE extruder cross-sell narrative for Cellink BIO X accounts.
 - [Literature Deep-Reads — cross-agent deep-read index](literature.md) - Cross-agent index of Robin's literature deep-reads across the 4 vendor product lines (CelVivo / 3Brain / Cellink / Femtobiomed) and adjacent application domains (organoid IRB / ethics, vascularized organoids, microfluidic / organ-on-chip, brain-organoid ALI oxygen engineering, HGSC ovarian cancer precision medicine). Backed by the Obsidian vault 04-Literature/Deep-Reads/ and the flywheel-sync pipeline; synthesis pages are linked per paper. The 2026-09-11 fetch added 2 new entries after the **vault silence streak was broken** at 2026-09-10 (Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering, the latter being the **first v4 Flywheel auto-sink pipeline entry**); the prior 2026-08-31 CelVivo cluster remains the most-recent vault activity for 11 calendar days before the 2026-09-10 / 2026-09-11 resumption.
-- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md)
+- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md) - Per-table record counts for Robin's 13 NocoDB literature tables (brain / intestinal / CelVivo / cardiac / cancer / liver / other-organoid / kidney / retinal / Cellink / organoid-old / lung / 3Brain) plus 2 company libraries, refreshed daily by `~/.local/bin/openwiki-update-sources.sh`. Cross-agent substrate for MiniMax code / Hermes to query 'what is in Robin's NocoDB'.
 - [OpenWiki Upgrade Drift (auto-generated)](openwiki-version-drift.md)
 - [OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)](OpenWiki%E9%80%9F%E6%9F%A5%E6%89%8B%E5%86%8C.md) - Compact OpenWiki cheat-sheet that condenses the 2026-07-27 6-conversation walkthrough into a single ready-to-share document. Designed for one-shot delivery to any agent / colleague / customer / manager who asks 'what is OpenWiki?' — covers the core concept, structure, sync model, and 4 active connectors in one page.
 - [RAGFlow 文档采样索引](ragflow-documents.md) - Document-level sample index of Robin's RAGFlow instance (http://10.10.10.254:9980) — 18 KBs / 32709 total docs / 401 sample entries (last sync 2026-08-03). Captures the 30-doc-per-request server-side limit + offset bug that forces 12 large KBs to single-page samples. Lets MiniMax code / Hermes see 'what's in each KB' without SQL queries; complements `/sources/ragflow.md` (KB-level health + counts).
-- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md)
+- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md) - Endpoint availability + 14 KB inventory for Robin's RAGFlow instance at http://10.10.10.254:9980/. Cross-agent KB retrieval substrate for MiniMax code / Hermes; covers the 2026-07-17 desktop embedding / bge-reranker outage and the keyword-grep fallback path.
 - [Sources](README.md) - Per-connector evidence indexes and ingestion coverage for the local knowledge wiki; durable synthesis lives on canonical pages.
 - [RustDesk 自建 hbbs 完整配置笔记 (2026-08-05)](rustdesk-sop.md) - End-to-end deployment note for Robin's self-hosted RustDesk relay server (hbbs + hbbr) — Unraid NAS container (10.10.10.254) + OpenWrt reverse-proxy (10.10.10.252) + Tencent Light Cloud (43.160.207.177) + ITX client (192.168.31.14), with permanent password + key config. Supports remote control of the ITX 24h host (per `/commitments.md` `itx-24h-host-build-2026-q3`) and Robin's travel-laptop remote-access workflow.
 - [CelVivo 销售弹药清单 (2026-07-16 实战索引)](sales-ammunition.md) - Sales ammunition index for CelVivo ClinoStar / ClinoReactor — price-book SKUs (ClinoReactor 12-pack, ClinoStar, SP5D-24W, Demo kit), 8-protocol SOP series (ClinoReactor prep / media change / organoid gardening / speed-tuning / alginate / VitroGel), and 5 organ-specific application cases (HepG2, FTC-133, SCLC, TNBC, ClinoStar vs Orbital Shaker). Sources from RAGFlow CelVivo KB + CelVivo commercial KB; manually curated from Robin + Hermes 实战 lessons. Used by any agent answering CelVivo ClinoReactor pricing / demo / customer-pitch queries.
-- [SeaFile 大文件存储索引](seafile.md)
+- [SeaFile 大文件存储索引](seafile.md) - API + library inventory for Robin's SeaFile instance at http://10.10.10.254:9898/ (Token-authenticated, port 9898 internal, public share-link via https://fb.biokingdom.top). Cross-agent file storage substrate for LDR uploads, Wiki.js image embeds, and OpenWiki source-link references.
 - [CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照)](vault-mtime-snapshot-2026-07-16.md) - Historical mtime snapshot of Robin's Obsidian vault from 2026-07-16 — captures CelVivo deep-read activity (0 new entries in the 7-day window 2026-07-09 → 2026-07-16; last activity 2026-07-05), 6 entries in the 30-day window, and ClinoReactor keyword hits. Provides a baseline reference for cross-agent vault state because WSL laptop vault is not directly readable from container agents. Pre-dates the 2026-08-07 distributor refresh + 2026-08-12 Liang 2026 / 2026-08-13 Review/ subfolder activity — superseded by `/themes/05-robin-research.md` for current vault state.
 - [Web Search Evidence](web-search.md) - Compact ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news.
-- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md)
+- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md) - GraphQL endpoint + 83-sample page inventory for Robin's Biokingdom Wiki.js instance at http://10.10.10.254:3000/graphql (≥ 1773 max page id; server-side cap ~50 per query). Cross-agent document publishing substrate — Robin + the LDR skill auto-publish to /organoid, /products, /literature, /articles, /3brain, /instruments paths.