chore: daily update 2026-09-14

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{
"updatedAt": "2026-09-12T18:11:57.883Z",
"updatedAt": "2026-09-13T18:22:19.267Z",
"command": "update",
"model": "MiniMax-M3",
"status": "complete",
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title: "Robin's Local Knowledge Base"
description: >
OpenWiki entrypoint and orientation — Robin's personal knowledge base with 5 synthesis themes (organoid equipment, bioprinting, AI agents, local LLM, personal research), navigation map, current connector status, and backlog. The 2026-09-11 18:14 UTC git-repo-1 fetch is the **twenty-ninth pull since 2026-08-07** — observed **vault HEAD bumped `391e4713` → `09bec367`** with **2 new vault commits** ending the **11-day vault silence streak**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); wiki HEAD bumped `7e2072c` → `55d930f` via 4 automated wiki commits (`299eeab` sources-sync 2026-09-10 twenty-seventh + `1e6a7cb` daily update 2026-09-10 + `2bf104e` daily update 2026-09-11 + `55d930f` sources-sync 2026-09-11 twenty-eighth); 4 carry-forward untracked directories bumped to 30/25/25/18-day carry-forward; 10 uncommitted wiki files in working tree (same shape as the 2026-09-10T18:19Z fetch); 1 new untracked `NO` file surfaced in wiki working tree. The 2026-09-12 18:00 UTC hackernews-1 fetch is the **thirty-third pull since 2026-08-07**, surfacing **the 1st `substring-noise-only Algolia lane on 4 of 6 + clean zero on 2 of 6` pull of the 2026-08-07 streak** (same shape as the 2026-09-10 prior pull with substring-noise on 3 of 6 + clean zero on 3 of 6, distinct from the 2026-09-11 fully-zero Algolia lane pull + the 2026-09-09 `nbHits-positive-but-items-zero` materialization-gap pull + the 2026-09-08 fully-zero pull) — `organoid` returned `nbHits=3 / hits=3` (3 substring-noise hits on the `organi-`/`organiz-` stem: `Ask HN: Did anyone try to build game engine purely for LLM` 4 pts + `Ask HN: New way of organizing Mathematical Research` 2 pts + `Show HN: Fog 2.0: I removed the AI auto-organizing I built my first app around` 1 pt) + `3Brain` returned `nbHits=8 / hits=8` (8 `brain`-substring collisions including `They Stole Our Code, Now They Want Our Brains (March 2026)` 8 pts + `A Fruit Fly's Disembodied Brain Is Now Trading Bitcoin on Coinbase` 3 pts + fruit-fly-brain mapping + `Brainstorming novel biological attacks with an LLM` 2 pts) + `Cellink` returned `nbHits=5 / hits=5` (5 substring-noise collisions including `At this point I feel like AI companies selling Fear` 13 pts + `Ask HN: Software people, where are you taking your careers next?` 12 pts + `Rust-split – save your tokens on large Rust source files` 4 pts); `CelVivo` + `openwiki` + `deepagents` returned clean zero on both `nbHits` and `hits` — **seventeenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal; **23 unique top+best items** (top 18/30 + best 10/30 - 5 overlap: `49668386` google.com/goto + `49671329` Fuck it make it anyway + `49668706` Navier-Stokes + `49672510` We must pace the frontier + `49670032` Apple ANE reverse-engineering — the 23-item dedup count is -2 from the 2026-09-11 pull's 25 unique, the **lowest 23-item dedup count of the 2026-08-07 streak**; the 5 overlap count is +2 from the 2026-09-11 pull's 3, the **first 5-overlap dedup of the 2026-08-07 streak since the 2026-09-08 pull's 5 overlap**). **The highest-engagement item of the pull** is **`49666735` "OpenAI agents carried out an undisclosed attack on RubyGems"** (889 pts best + 524 cmts, by `chao-` 2026-09-12, https://www.rubyhack.ai/ — RubyGems supply-chain security incident; **0.59 cmts-to-upvote ratio** indicates substantive security-research discussion; **off-scope per scope** because the item is a Ruby/RubyGems supply-chain attack writeup rather than a vendor release / framework / schema / named-stack signal; the **889-pt engagement is the 3rd-highest single-item of the entire 2026-08-07 streak** after the 2026-09-04 GPT-6 Astra `49554643` 2080 pts + the 2026-09-10 iPhone Duo `49630931` 1350 pts + the 2026-08-27 Nvidia-Hugging Face acquisition `49458161` 1719 pts — the **highest single best-feed item of the 2026-08-07 streak** at 889 pts + 524 cmts). **Two high-engagement named-stack-adjacent items**: (1) **`49672510` "We must pace the frontier"** (206 pts top + 278 cmts top, by `apsec112` 2026-09-12, https://darioamodei.com/post/we-must-pace-the-frontier — **Anthropic CEO Dario Amodei blog post** on AI development pacing; **0.78 cmts-to-upvote ratio** indicates substantive AI-policy discussion; **adjacent-not-promoted per scope** because Anthropic is not on Robin's named stack + the entry is a CEO AI-policy essay rather than a model release; the 12th entry candidate in the AI-vendor-business-stack cluster if promoted but adjacent-not-promoted per scope); (2) **`49673098` "Nvidia is the central bank of AI"** (168 pts top+best + 143 cmts, by `tolugenius` 2026-09-12, https://www.economist.com/interactive/briefing/2026/09/03/nvidia-is-the-central-baLine truncated
tags: [quickstart, navigation, openwiki, status, 2026-09-12, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, vault-silent-7d, vault-silent-8d, vault-silent-9d, vault-silent-4d, vault-silent-5d, vault-silent-6d, vault-silent-3d, vault-silent-2d, vault-silence-broken, vault-resumed-after-11d, fourteenth-sources-sync, fifteenth-sources-sync, sixteenth-sources-sync, seventeenth-sources-sync, eighteenth-sources-sync, nineteenth-sources-sync, twentieth-sources-sync, twenty-first-sources-sync, twenty-second-sources-sync, twenty-third-sources-sync, twenty-fourth-sources-sync, twenty-fifth-sources-sync, twenty-sixth-sources-sync, twenty-seventh-sources-sync, twenty-eighth-sources-sync, twentieth-hn-pull, twenty-first-hn-pull, twenty-second-hn-pull, twenty-third-hn-pull, twenty-fourth-hn-pull, twenty-fifth-hn-pull, twenty-sixth-hn-pull, twenty-seventh-hn-pull, twenty-eighth-hn-pull, twenty-ninth-hn-pull, thirtieth-hn-pull, thirty-first-hn-pull, thirty-second-hn-pull, thirty-third-hn-pull, nineteenth-hn-pull, sixteenth-websearch-skip, twentieth-websearch-skip, twenty-first-websearch-skip, twenty-second-websearch-skip, twenty-third-websearch-skip, twenty-fourth-websearch-skip, twenty-fifth-websearch-skip, twenty-sixth-websearch-skip, twenty-seventh-websearch-skip, twenty-eighth-websearch-skip, twenty-ninth-websearch-skip, templates-celvivo-commercial-confirmed-one-off, tencent-hy4-adjacent, almanac-yc-s26-wikis-as-agent-memory, qwen38-flash-next-mac-12th-cluster-entry, m4-pro-mac-mini-local-model-13th-cluster-entry, k2-horizon-14th-cluster-entry, qwen-38-27b-cerebras-15th-cluster-entry, gemini-38-flash-closed-weight-adjacent, muse-spark-closed-weight-adjacent, gpt-6-astra-highest-engagement-streak, gpt-6-astra-openrouter-5th-closed-weight-cluster-entry, anthropic-formalizing-fl-t-anthropic-business-stack-adjacent, portal-by-spotify-claude-code-token-usage-adjacent, collusion-wiki-agent-message-board-adjacent, china-commercial-bci-implant-watchlist-anchor, cloud-in-a-bottle-8th-cluster-entry, asahi-linux-m3-adjacent, openai-an-alien-mind-adjacent, fruit-fly-brain-connectome-watchlist-adjacent, deepread-40240593-sixteen-silent-fetches, deepread-40240593-eighteen-silent-fetches, mistral-raises-3b-eur-sovereign-openweight-adjacent, google-jail-for-independent-wikis-openwiki-adjacent, alphagenome-atlas-deepmind-closed-weight-adjacent, libreoffice-no-ai-features-590pt-named-stack-adjacent, jellyfin-12-556pt-off-scope, navier-stokes-openai-271pt-closed-weight-adjacent, i-have-adhd-coding-skill-107pt-named-stack-adjacent, qwen38-27b-quantization-benchmark-95pt-borderline, fifth-fully-zero-algolia-lane, deepseek-v41-flash-801pt-16th-cluster-adjacent, openai-training-toggle-8th-business-stack-entry, openai-proof-stolen-9th-business-stack-entry, openai-unpublished-math-10th-business-stack-entry, ai-vendor-business-stack-cluster-10-items, cognition-swe-2-coding-agent-adjacent, eighth-vault-silence-fetch, ninth-vault-silence-fetch, twenty-fifth-git-repo-fetch, twenty-sixth-git-repo-fetch, twenty-seventh-git-repo-fetch, twenty-eighth-git-repo-fetch, twenty-ninth-git-repo-fetch, sixth-fully-zero-algolia-lane, openai-agents-api-11th-business-stack-entry, astra-for-coding-named-stack-adjacent, claude-age-assurance-closed-weight-adjacent, rtk-token-savings-named-stack-adjacent, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, openai-agents-rubygems-attack-889pt-off-scope, dario-amodei-we-must-pace-the-frontier-12th-business-stack-candidate, nvidia-is-the-central-bank-of-ai-168pt-adjacent, ilands-ai-agent-spam-78pt-off-scope, apple-ane-reverse-engineering-189pt-off-scope, first-substring-noise-only-on-4-of-6-algolia-lane, lowest-23-item-dedup-count-streak, first-5-overlap-dedup-since-2026-09-08]
timestamp: 2026-09-12T18:00:00Z
tags: [quickstart, navigation, openwiki, status, 2026-09-13, 2026-09-12, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, vault-silent-7d, vault-silent-8d, vault-silent-9d, vault-silent-4d, vault-silent-5d, vault-silent-6d, vault-silent-3d, vault-silent-2d, vault-silence-broken, vault-resumed-after-11d, fourteenth-sources-sync, fifteenth-sources-sync, sixteenth-sources-sync, seventeenth-sources-sync, eighteenth-sources-sync, nineteenth-sources-sync, twentieth-sources-sync, twenty-first-sources-sync, twenty-second-sources-sync, twenty-third-sources-sync, twenty-fourth-sources-sync, twenty-fifth-sources-sync, twenty-sixth-sources-sync, twenty-seventh-sources-sync, twenty-eighth-sources-sync, twentieth-hn-pull, twenty-first-hn-pull, twenty-second-hn-pull, twenty-third-hn-pull, twenty-fourth-hn-pull, twenty-fifth-hn-pull, twenty-sixth-hn-pull, twenty-seventh-hn-pull, twenty-eighth-hn-pull, twenty-ninth-hn-pull, thirtieth-hn-pull, thirty-first-hn-pull, thirty-second-hn-pull, thirty-third-hn-pull, nineteenth-hn-pull, sixteenth-websearch-skip, twentieth-websearch-skip, twenty-first-websearch-skip, twenty-second-websearch-skip, twenty-third-websearch-skip, twenty-fourth-websearch-skip, twenty-fifth-websearch-skip, twenty-sixth-websearch-skip, twenty-seventh-websearch-skip, twenty-eighth-websearch-skip, twenty-ninth-websearch-skip, templates-celvivo-commercial-confirmed-one-off, tencent-hy4-adjacent, almanac-yc-s26-wikis-as-agent-memory, qwen38-flash-next-mac-12th-cluster-entry, m4-pro-mac-mini-local-model-13th-cluster-entry, k2-horizon-14th-cluster-entry, qwen-38-27b-cerebras-15th-cluster-entry, gemini-38-flash-closed-weight-adjacent, muse-spark-closed-weight-adjacent, gpt-6-astra-highest-engagement-streak, gpt-6-astra-openrouter-5th-closed-weight-cluster-entry, anthropic-formalizing-fl-t-anthropic-business-stack-adjacent, portal-by-spotify-claude-code-token-usage-adjacent, collusion-wiki-agent-message-board-adjacent, china-commercial-bci-implant-watchlist-anchor, cloud-in-a-bottle-8th-cluster-entry, asahi-linux-m3-adjacent, openai-an-alien-mind-adjacent, fruit-fly-brain-connectome-watchlist-adjacent, deepread-40240593-sixteen-silent-fetches, deepread-40240593-eighteen-silent-fetches, mistral-raises-3b-eur-sovereign-openweight-adjacent, google-jail-for-independent-wikis-openwiki-adjacent, alphagenome-atlas-deepmind-closed-weight-adjacent, libreoffice-no-ai-features-590pt-named-stack-adjacent, jellyfin-12-556pt-off-scope, navier-stokes-openai-271pt-closed-weight-adjacent, i-have-adhd-coding-skill-107pt-named-stack-adjacent, qwen38-27b-quantization-benchmark-95pt-borderline, fifth-fully-zero-algolia-lane, deepseek-v41-flash-801pt-16th-cluster-adjacent, openai-training-toggle-8th-business-stack-entry, openai-proof-stolen-9th-business-stack-entry, openai-unpublished-math-10th-business-stack-entry, ai-vendor-business-stack-cluster-10-items, cognition-swe-2-coding-agent-adjacent, eighth-vault-silence-fetch, ninth-vault-silence-fetch, twenty-fifth-git-repo-fetch, twenty-sixth-git-repo-fetch, twenty-seventh-git-repo-fetch, twenty-eighth-git-repo-fetch, twenty-ninth-git-repo-fetch, thirtieth-git-repo-fetch, thirty-first-git-repo-fetch, moc-organoid-3d-culture-uncommitted-edit, sixth-fully-zero-algolia-lane, openai-agents-api-11th-business-stack-entry, astra-for-coding-named-stack-adjacent, claude-age-assurance-closed-weight-adjacent, rtk-token-savings-named-stack-adjacent, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, openai-agents-rubygems-attack-889pt-off-scope, dario-amodei-we-must-pace-the-frontier-12th-business-stack-candidate, nvidia-is-the-central-bank-of-ai-168pt-adjacent, ilands-ai-agent-spam-78pt-off-scope, apple-ane-reverse-engineering-189pt-off-scope, first-substring-noise-only-on-4-of-6-algolia-lane, lowest-23-item-dedup-count-streak, first-5-overlap-dedup-since-2026-09-08]
timestamp: 2026-09-13T18:08:00Z
---
**Latest update — git-repo-1 (2026-09-13T18:08Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-09-13T18-08-XX-XXXZ/manifest.json`. **Vault HEAD unchanged** at `09bec36702cdbd8ef1d2644919ca337248ae6bff` (the 2026-09-11T18:14Z baseline that persisted through the 2026-09-12T18:08Z intermediate fetch) — **0 new vault commits** in the 2026-09-12T18:08Z → 2026-09-13T18:08Z 24-hour window. This is the **2nd consecutive fetch with vault silent** since the Tomas 2026 + Vijakumaran 2026 vault-silence-broken event at the 2026-09-11T18:14Z fetch. The Tomas + Vijakumaran pair remains the most recent committed vault activity. **1 working-tree modification** was observed at the 2026-09-13T18:08Z fetch — `M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"` (mtime `2026-09-13 11:55:42 +0800`, today) — Robin is actively editing the 类器官与3D培养 MOC index file but has NOT yet committed the changes. This is the **first vault working-tree modification observed since the 2026-08-24/25 burst's intermediate-commit pattern was abandoned** — it indicates the start of a new burst-cycle but the new burst has not yet produced committed vault activity. **8 untracked regional agent files** from 2026-08-07 persist unchanged. **Wiki HEAD bumped** from `55d930ffbc0a658aa335683f0d412496b32af549` (2026-09-11T18:14Z fetch) to **`5f33bd3015e3ac6b740702d55888ba93fe024eab`** (2026-09-13T18:08Z fetch); **4 new automated wiki commits** in the 2026-09-12T18:08Z → 2026-09-13T18:08Z 48-hour window (the intermediate 2026-09-12T18:08Z fetch + this 2026-09-13T18:08Z fetch): (a) `7cfb801` 2026-09-12 chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern after `55d930f` 2026-09-11 + `2bf104e` 2026-09-11 + `1e6a7cb` 2026-09-10 + `299eeab` 2026-09-10 + ... + `2507925` 2026-08-15; per `git show --stat 7cfb801` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files) + (b) `999a37d` 2026-09-12 chore: daily update 2026-09-12 (per `git show --stat 999a37d` the commit touched 15 files from the prior dirty set including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — the same 15-16 file shape as the prior daily updates + the new `NO` untracked stray-test-artifact file `Has \n?: 0` was introduced at this commit) + (c) `0447186` 2026-09-13 chore: daily update 2026-09-13 (per `git show --stat 0447186` the commit touched 12 files from the prior dirty set including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md`) + (d) `5f33bd3` 2026-09-13 chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern; per `git show --stat 5f33bd3` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`). **8 uncommitted wiki files** in working tree per the manifest `changedFiles` list at this fetch (`M .last-update.json` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md`) — **different shape from the 10-dirty-file baseline at the 2026-09-11T18:14Z fetch**: the `999a37d` daily update cleared `index.md` + `quickstart.md` + `sources/git-repo.md` + `themes.md` (the daily-update cycle re-touched them and the metadata cycle did not re-touch them at this fetch); `sources/openwiki-version-drift.md` was re-touched in this cycle (was not in the prior 10-dirty-file baseline); sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) + the metadata cycle re-touched `.last-update.json` + `sources/hackernews.md` + `sources/web-search.md`; the 8-dirty-file list does not include `index.md` + `quickstart.md` + `sources/git-repo.md` + `themes.md` (cleared by the daily-update cycle) or `commitments.md` + `open-questions.md` + `sources/README.md` + `sources/iLine truncated
**Latest update — git-repo-1 (2026-09-11T18:14Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-09-11T18-14-12-972Z/manifest.json`. **Vault HEAD bumped** from `391e47131679ce9edf0f525236e78ebb13e0d232` (the 2026-08-31T13:42 +0800 baseline that had persisted for 11 consecutive fetches) to **`09bec36702cdbd8ef1d2644919ca337248ae6bff`** — **vault silence streak BROKEN after 11 calendar days** at the 2026-09-10T18:19Z → 2026-09-11T18:14Z fetch; **2 new vault commits** in the 24-hour window: (a) `1fd63019` 2026-09-10 — `feat(literature): Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read` — adds `obsidian-vault/04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md` (Tomas EJ, Davis J, Ramos Valdes Y, Shepherd TG 2026, Cancer Biol Ther 27(1):2611602, Western University, PMID 41520277, PMC12795296 gold OA, Wiki.js 1787 — 0 vendor callouts, spheroid = ULA static plate + organoid = Cultrex BME); (b) `09bec367` 2026-09-11 — `literature: 精读 NocoDB Id=3029 Air-liquid interface-centered oxygen engineering in human br (飞轮 v4 自动 sink)` — adds `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md` (Vijakumaran 2026 brain-organoid ALI-centered oxygen engineering, **first v4 Flywheel auto-sink pipeline entry** — the first deep-read committed by the automated flywheel pipeline rather than by Robin's manual commit). The combined cluster breaks the 11-day vault silence with 2 application-domain papers: 1 HGSC ovarian-cancer PDO precision-medicine paper + 1 brain-organoid ALI oxygen-engineering paper; both papers extend Robin's `class-organoid-3d-bioprinting` theme evidence footprint (Tomas = HGSC precision oncology + spheroid/organoid combo; Vijakumaran = CelVivo ClinoStar-adjacent brain-organoid long-term culture + ALI oxygen engineering, 3Brain HD-MEA-adjacent for downstream e-phys validation). The **non-standard `04-Literature/Deep-Reads/` root-level pattern** continues (Tomas commit landed at root-level, not in a per-vendor / per-application-domain subfolder) but Vijakumaran's commit landed in the `Organoid/` subfolder — the first dual-pathway pattern (root + per-domain) in Robin's LDR SOP. **Wiki HEAD** bumped from `7e2072cef52a842ccde9daab27ad82699c9e127c` (2026-09-09T18:11Z fetch) to **`55d930ffbc0a658aa335683f0d412496b32af549`** (2026-09-11T18:14Z fetch); **4 new automated wiki commits** in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window: (a) `299eeab` 2026-09-10 chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern after `7e2072c` 2026-09-09 + `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15; per `git show --stat 299eeab` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files) + (b) `1e6a7cb` 2026-09-10 chore: daily update 2026-09-10 (per `git show --stat 1e6a7cb` the commit touched 16 files from the prior dirty set including `.last-update.json` + `open-questions.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — reducing uncommitted-file count from 10 → ~5) + (c) `2bf104e` 2026-09-11 chore: daily update 2026-09-11 (per `git show --stat 2bf104e` the commit touched 15 files from the prior dirty set including `.last-update.json` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` — the daily update cycle continues to re-touch the same 15-16 file shape) + (d) `55d930f` 2026-09-11 chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the `2507925` 2026Line truncated
OpenWiki entrypoint and orientation — Robin's personal knowledge base with 5 synthesis themes (organoid equipment, bioprinting, AI agents, local LLM, personal research), navigation map, current connector status, and backlog. **Latest update — hackernews-1 (2026-09-11T18:00Z).** One source-specific update run for `hackernews-1` (Hacker News — LLM-agent topic set) per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=hackernews` and wrote raw data at `~/.openwiki/connectors/hackernews/raw/2026-09-11T18-00-02-196Z/hackernews-results.json`. 2 feeds (`top` 30 IDs / 21 resolved + `best` 30 IDs / 7 resolved) → **25 unique top+best items** (3 overlap: `49656225` Claude 18+ + `49649213` OpenAI Agents API + `49658299` Houthis key island — the 25-item dedup count is -4 from the 2026-09-10 pull's 29 unique, the **first 25-item dedup count of the 2026-08-07 streak**). The 6-query lane returned the **6th `fully-zero Algolia lane` pull of the 2026-08-07 streak** — same shape as the 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-09-04 + 2026-09-08 fully-zero pulls (all 6 Algolia queries returned `dbHit=null / hits=0` with no substring-noise false positives); `organoid` + `CelVivo` + `3Brain` + `Cellink` + `openwiki` + `deepagents` each returned clean `dbHit=null / hits=0`; **sixteenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal. The connector completed normally at `fetchedAt: 2026-09-11T18:00:33.613Z` (24-hour window). This is the **32nd pull since 2026-08-07** (after 31 prior pulls — 5 fully-zero + 6 substring-noise-only + 7 dbHits-positive-but-items-zero + 12 other [normal-noise-only / items-aggregated]). Tavily (web-search) remains the productive lane for vendor news. **The highest-engagement item of the pull** is **`49657850` "Ask HN: Can we please limit the AI news flood?"** (679 pts best + 334 cmts, by `cromka` 2026-09-11 — meta HN discussion on AI-news volume; **0.49 cmts-to-upvote ratio** indicates substantive community feedback; **off-scope per scope** because the item is a meta HN discussion rather than a vendor / framework / schema / named-stack signal). **The highest-engagement named-stack-adjacent AI-agent platform launch of the pull** is **`49649213` "OpenAI Agents API"** (333 pts top+best + 169 cmts, by `aquir` 2026-09-10, https://developers.openai.com/api/docs/guides/agents-api/overview — **OpenAI's new Agents API platform launch**; **0.51 cmts-to-upvote ratio** indicates substantive engineering discussion; **adjacent-not-promoted per scope** because OpenAI is closed-weight and not on Robin's named stack — Hermes / MiniMax-M3+H3 / OpenWiki / RAGFlow / NocoDB / SeaFile / Codex CLI are the named agents; the **333-pt engagement** would be the **11th entry candidate** in the AI-vendor-business-stack cluster, joining the 2026-09-05 `49568506` Anthropic FLT formalization 706 pts (7th entry) + 2026-09-10 `49643556` OpenAI training-toggle 383 pts (8th entry) + 2026-09-10 `49638353` OpenAI proof stolen 283 pts (9th entry) + 2026-09-10 `49639408` OpenAI unpublished math 210 pts (10th entry); the cluster would grow from 10 items / ~4,104+ pts to **11 items / ~4,437+ pts across 9 pulls over 12 days** if promoted, but **adjacent-not-promoted per scope** because OpenAI is closed-weight and not on Robin's named stack + the entry is a new AI-agent platform launch rather than the privacy / IP / business-stack signal that the existing 4 OpenAI cluster entries describe). **Other named-stack-adjacent items on this pull**: **`49654229` "Astra for Coding: Why Are We Doing This Again?"** (406 pts best + 311 cmts, by `manojbajaj95` 2026-09-11, https://lucumr.pocoo.org/2026/9/7/astra-why/ — Armin Ronacher's blog post on Astra for Coding + critical reflection on AI-coding-tool proliferation; **0.77 cmts-to-upvote ratio** indicates substantive engineering discussion; **adjacent-not-promoted per scope** because Astra is not on Robin's named coding-agent stack — Codex CLI is the named coding-agent — but the **direct cross-walk to the Codex CLI / coding-agent-tooling cluster** is structurally adjacent because the item is a high-engagement reflection on the AI-coding-tool category that Codex CLI belongs to; **3rd-highest coding-agent-tooling item of the 2026-08-07 streak** after the 2026-09-02 ChatGPT/Codex LibreOffice 473 pts + the 2026-09-05 Portal by Spotify Claude Code 218 pts), **`49656225` "Claude is only available to people over 18 years"** (371 pts top+best + 447 cmts, by `Muhammad523` 2026-09-11, https://support.claude.com/en/articles/15171100-age-assurance-on-claude — **Anthropic's age-assurance policy announcement** for Claude; **1.20 cmts-to-upvote ratio** indicates substantive community debate on AI age-verification; **adjacent-not-promoted per scope** because Anthropic is notLine truncated
@@ -185,7 +187,8 @@ Deferred until Robin configures connectors or asks for specific documentation:
- **X / Twitter evidence index** — `/sources/x.md` (no X connector configured yet)
- **Hacker News evidence index** — `/sources/hackernews.md` (active; last refreshed 2026-09-11 18:00 UTC — source-specific LLM-agent topic set (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`); **thirty-second pull since 2026-08-07** — the **6th `fully-zero Algolia lane` pull of the 2026-08-07 streak** (after 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-09-04 + 2026-09-08 — same shape as those five prior pulls); 2 feeds (`top` 30 IDs / 21 resolved + `best` 30 IDs / 7 resolved) → **25 unique top+best items** (3 overlap: `49656225` Claude 18+ + `49649213` OpenAI Agents API + `49658299` Houthis key island); the 6-query lane returned the 6th `fully-zero Algolia lane` pull — `organoid` + `CelVivo` + `3Brain` + `Cellink` + `openwiki` + `deepagents` each returned clean `nbHits=null / hits=0`; the connector completed normally at `fetchedAt: 2026-09-11T18:00:33.613Z` (24-hour window); **the `MiniMax-m3` row on `/themes.md` gets a description refresh** to mention the AI-vendor-business-stack cluster has the **11th entry candidate** (`49649213` OpenAI Agents API at 333 pts top+best + 169 cmts, adjacent-not-promoted per scope); the cluster total stays at **~4,104+ pts across 10 items in 8 pulls over 11 days** (the 11th entry candidate is adjacent-not-promoted per scope); **Last seen stays at 2026-08-03** because the 2026-09-11 pull does not surface any MiniMax-M3 or MiniMax-H3 release; Tavily (web-search) remains the productive lane for vendor news; **named-stack-adjacent items flagged for traceability on this pull**: **`49649213` "OpenAI Agents API"** (333 pts top+best + 169 cmts, by `aquir` 2026-09-10, https://developers.openai.com/api/docs/guides/agents-api/overview — **OpenAI's new Agents API platform launch**; **0.51 cmts-to-upvote ratio**; **adjacent-not-promoted per scope** because OpenAI is closed-weight and not on Robin's named stack — 11th entry candidate in the AI-vendor-business-stack cluster), **`49654229` "Astra for Coding: Why Are We Doing This Again?"** (406 pts best + 311 cmts, by `manojbajaj95` 2026-09-11, https://lucumr.pocoo.org/2026/9/7/astra-why/ — Armin Ronacher's blog post on Astra for Coding + critical reflection on AI-coding-tool proliferation; **adjacent-not-promoted per scope** because Astra is not on Robin's named coding-agent stack — Codex CLI is the named coding-agent — but the **direct cross-walk to the Codex CLI / coding-agent-tooling cluster** is structurally adjacent; **3rd-highest coding-agent-tooling item of the 2026-08-07 streak** after the 2026-09-02 ChatGPT/Codex LibreOffice 473 pts + the 2026-09-05 Portal by Spotify Claude Code 218 pts), **`49656225` "Claude is only available to people over 18 years"** (371 pts top+best + 447 cmts, by `Muhammad523` 2026-09-11, https://support.claude.com/en/articles/15171100-age-assurance-on-claude — Anthropic's age-assurance policy announcement; **1.20 cmts-to-upvote ratio**; **adjacent-not-promoted per scope** because Anthropic is not on Robin's named stack + the entry is a policy change rather than a model release; cross-walks to the closed-weight-M3-comparison-anchor cluster via the Anthropic / M3 closed-weight cross-walk pattern but does not promote the cluster), **`49656496` "The Waymo effect: how AI is quietly making research less collaborative"** (310 pts best + 271 cmts, by `JohnHammersley` 2026-09-11, https://www.researchagenda.news/articles/the-waymo-effect.html — research-news commentary; **off-scope per scope** because the entry is a cultural-research commentary), **`49659245` "HuggingFace: Security.txt"** (161 pts top + 37 cmts, by `yarapavan` 2026-09-11, https://huggingface.co/security.txt — HuggingFace's security disclosure; **adjacent-not-promoted per scope** because HuggingFace is not on Robin's named stack), **`49656471` "RTK reports token savings, but our cost benchmarks disagree"** (112 pts top + 57 cmts, by `michalwarda` 2026-09-11, https://quesma.com/blog/does-rtk-make-ai-coding-cheaper/ — Quesma blog post questioning RTK's AI-coding token-savings numbers; **named-stack-adjacent because Codex CLI is on Robin's named coding-agent stack**; **adjacent-not-promoted per scope** because RTK is not on Robin's named stack + the entry is a critical reflection; **flagged for Tavily followup**), **`49660676` "Show HN: Godot and Rust based multiplexer (terminal panes and more)"** (46 pts top + 26 cmts, by `1nv1n` 2026-09-11, https://github.com/godot-pty/gpty — gPTY project; the submitter text explicitly mentions "orchestrating autonomous AI agents by way of dogfooding"; **adjacent-not-promoted per scope** because engagement (46 pts) is below the 100-pt refresh bar + the entry is a Show HN side-project; the **agent-orchestration framing** in the submitter text is structurally adjacent to the self-hosted-agentic-substrate cluster; **flagged for Tavily followup**), and **`49652270` "OpenAI considers slowing advanced AI development, Sam Altman tells employees"** (27 pts top + 20 cmts, byLine truncated
- **Web search evidence index** — `/sources/web-search.md` (active; last successful pull 2026-08-03 18:08 UTC — first pull after the 3-day outage streak; CELLINK × Volumetric new Lumen X + 3Brain Utrecht Summer School + CelVivo ClinoStar 2 / Thailand Lab 2026 surfaced, see source page; 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, 2026-08-19, 2026-08-20, 2026-08-21, 2026-08-22, 2026-08-23, 2026-08-24, 2026-08-25, 2026-08-27, 2026-08-28, 2026-08-29, 2026-08-30, 2026-08-31, 2026-09-01, 2026-09-02, 2026-09-03, 2026-09-04, 2026-09-05, 2026-09-06, 2026-09-07, 2026-09-08, 2026-09-09, 2026-09-10, and 2026-09-11 update attempts skipped — connector not enabled in runtime registry, `TAVILY_API_KEY` missing; disk config shows `enabled: true` + 6 Chinese queries but the runtime registry disagrees — operational concern, not a wiki-synthesis concern; **twenty-ninth consecutive skip on the same code path** including 2026-09-11)
- **Git repo evidence index** — `/sources/git-repo.md` (active; last refreshed **2026-09-11T18:14Z** — covers Robin's Obsidian vault (HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff` 2026-09-11, **vault HEAD bumped from `391e4713` → `09bec367`** with **2 new vault commits** ending the **11-day vault silence streak**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**, `obsidian-vault/04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md`) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**, `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md`)) + OpenWiki wiki (HEAD `55d930ffbc0a658aa335683f0d412496b32af549` 2026-09-11; the wiki HEAD bumped from `7e2072c` → `55d930f` via **4 automated commits** (`299eeab` sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync + `1e6a7cb` daily update 2026-09-10 + `2bf104e` daily update 2026-09-11 + `55d930f` sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the count-data wipe pattern; per `git show --stat 55d930f` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the working tree carries **10 uncommitted wiki files** (same shape as the 2026-09-10T18:19Z fetch — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) + **1 new untracked `NO` file** (stray test artifact, recorded for traceability only); the 4 carry-forward untracked directories bumped to **30/25/25/18-day** at the 2026-09-11T18:14Z fetch — `Review/zhou2023_computer_vision_microfluidics.md` 29 → **30-day** + `celvivo_commercial/` + `templates/` 24 → **25-day** + `deepread_40240593/` 17 → **18-day**; **the 2026-09-11 18:14 UTC fetch is documented in the "Latest update" section at the top** — see the new "Latest update — git-repo-1 (2026-09-11T18:14Z)" paragraph; the prior 2026-09-09T18:11Z fetch (vault HEAD `391e4713`, **26th** consecutive sources-sync, 10-dirty-file baseline, 9 calendar days vault silence) is also documented at the top under "Latest update — git-repo-1 (2026-09-09T18:11Z"). The 2026-09-10T18:19Z fetch was the last git-repo-1 fetch in the same 24-hour window before this 2026-09-11T18:14Z fetch — that fetch observed **vault HEAD unchanged** at `391e4713` for the **10th consecutive fetch** since the 2026-08-31 THIRD 5-paper CelVivo LDR cluster (**10 calendar days of vault silence**; **0 new vault commits** in the 2026-09-09T18:11Z → 2026-09-10T18:19Z 24-hour window); carry-forward untracked directories bumped to **30/24/24/17-day** at the 2026-09-10T18:19Z fetch; wiki HEAD bumped from `7e2072c` → `299eeab` via 1 automated wiki commit at the 2026-09-10T18:19Z fetch (`299eeab` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync); the working tree carries **10 uncommitted wiki files** at the 2026-09-10T18:19Z fetch (same shape as the 2026-09-09T18:11Z fetch — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`). The 2026-09-11T18:14Z fetch is the **twenty-ninth git-repo-1 fetch of the 2026-08-07 streak**. **Synthesis-layer change at the 2026-09-11T18:14Z fetch**: the **vault-silence-streak-broken** event is substantive (vault produced 2 new external-evidence papers: Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering) — the `class-organoid-3d-bioprinting` row on `/themes.md` gets a description refresh + Last-seen bump 2026-08-25 → 2026-09-11 + Evidence count 37+ → 39+ to reflect the Tomas 2026 + Vijakumaran 2026 entry pair; no `/commitments.md` row + no `/personal-logistics.md` item (the 2 new vault commits are research-output signals, not work-task or life-admin signals). Prior 2026-09-08 daily update `57be545` + 2026-09-08 sources-sync `556d937` (the **twenty-fifth** consecutive sources-sync) bumped wiki HEAD to `556d937` + left 10-dirty-file baseline; the prior 2026-08-31 daily update `c9e2770` (single-connector raw-data refresh combining HN-1 + git-repo-1 + web-search-1 skipped) + 2026-08-31 sources-sync `9582dea` (the **seventeenth** consecutive sources-sync) bumped wiki HEAD to `9582dea` + bumped dirty count to 11; the 2026-08-31 git-repo-1 fetch (vault HEAD bumped `9d4767c7` → `391e4713`, 5 new vault commits, ending the 5-day vault silence) is the THIRD consecutive single-day 5-paper CelVivo LDR burst (Yan + Stewart + Nguyen + Aiello + Miao all at `obsidian-vault/04-LiLine truncated
- **Git repo evidence index** — `/sources/git-repo.md` (active; last refreshed **2026-09-13T18:08Z** — covers Robin's Obsidian vault (HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff` 2026-09-11, vault HEAD **unchanged** at `09bec367` for the **2nd consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11; **0 new vault commits** + **1 working-tree modification** at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800; Robin actively editing MOC index file but NOT yet committed — the first vault working-tree modification since the 2026-08-24/25 burst) + OpenWiki wiki (HEAD `5f33bd3015e3ac6b740702d55888ba93fe024eab` 2026-09-13; the wiki HEAD bumped from `55d930f` → `5f33bd3` via **4 automated commits** in the 2026-09-11 → 2026-09-13 48-hour window (`7cfb801` sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync + `999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 + `5f33bd3` sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync re-applying the count-data wipe pattern; per `git show --stat 5f33bd3` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the working tree carries **8 uncommitted wiki files** (down from the 10-dirty baseline at the 2026-09-11T18:14Z fetch — `M .last-update.json` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md`; the daily-update cycle on 2026-09-12 cleared `index.md` + `quickstart.md` + `sources/git-repo.md` + `themes.md` that the prior metadata cycle had re-touched, and `sources/openwiki-version-drift.md` was newly re-touched in this cycle); the 4 carry-forward untracked directories bumped to **32/27/27/20-day** at the 2026-09-13T18:08Z fetch — `Review/zhou2023_computer_vision_microfluidics.md` 31 → **32-day** + `celvivo_commercial/` + `templates/` 26 → **27-day** + `deepread_40240593/` 19 → **20-day**; **the 2026-09-13 18:08 UTC fetch is documented in the "Latest update" section at the top** — see the new "Latest update — git-repo-1 (2026-09-13T18:08Z)" paragraph; the prior 2026-09-11T18:14Z fetch observed **vault HEAD bumped** from `391e4713` → `09bec367` with **2 new vault commits** ending the **11-day vault silence streak**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**, `obsidian-vault/04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md`) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**, `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md`); the 4 carry-forward untracked directories bumped to **30/25/25/18-day** at the 2026-09-11T18:14Z fetch; wiki HEAD bumped from `7e2072c` → `55d930f` via **4 automated commits** (`299eeab` sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync + `1e6a7cb` daily update 2026-09-10 + `2bf104e` daily update 2026-09-11 + `55d930f` sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync); the working tree carried **10 uncommitted wiki files** at the 2026-09-11T18:14Z fetch. The 2026-09-13T18:08Z fetch is the **thirty-first git-repo-1 fetch of the 2026-08-07 streak**. **Synthesis-layer change at the 2026-09-13T18:08Z fetch**: the vault delta is empty (0 new commits, 1 working-tree modification that is uncommitted) and the wiki delta is automated maintenance only — **no `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item** at this fetch. The 2026-09-11T18:14Z fetch was the previous substantively-updated fetch: the **vault-silence-streak-broken** event refreshed the `class-organoid-3d-bioprinting` row on `/themes.md` with Last-seen bump 2026-08-25 → 2026-09-11 + Evidence count 37+ → 39+ to reflect the Tomas 2026 + Vijakumaran 2026 entry pair (the synthesis layer changed because vault produced 2 new external-evidence papers: Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering) — see the prior paragraph for the full 2026-09-11T18:14Z fetch delta. The 2026-09-12T18:08Z intermediate fetch observed the same state as the 2026-09-11T18:14Z fetch (vault HEAD `09bec367`, 0 new commits, 2 new wiki commits `7cfb801` sources-sync 2026-09-12 twenty-ninth + `999a37d` daily update 2026-09-12). The 2026-08-31 git-repo-1 fetch (vault HEAD bumped `9d4767c7` → `391e4713`, 5 new vault commits, ending the 5-day vault silence) is the THIRD consecutive single-day 5-paper CelVivo LDR burst (Yan + Stewart + Nguyen + Aiello + Miao all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V parallel subfolder — Robin's first parallel-naming deep-read subfolder convention) — see [`/sources/gLine truncated
- **Project / people / company pages** — only created when durable entities emerge from ingested data
These are intentionally blank until there is real evidence to put in them. Populating them with placeholders would dilute the synthesis layer. the synthesis layer.
@@ -206,3 +209,4 @@ These are intentionally blank until there is real evidence to put in them. Popul
**Latest update — git-repo-1 (2026-09-05T18:18Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-09-05T18-18-02-337Z/manifest.json`. **Vault HEAD unchanged** at `391e47131679ce9edf0f525236e78ebb13e0d232` (same as the 2026-09-04T18:12Z + 2026-09-03T18:09Z + 2026-09-02T18:16Z + 2026-09-01T18:07Z + 2026-08-31T18:09Z fetches) — **0 new vault commits** in the 2026-09-04T18:12Z → 2026-09-05T18:18Z 24-hour window; the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR cluster (Yan 2024 + Stewart 2023 + Nguyen 2024 + Aiello 2025 + Miao 2025, all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity. **Vault silent for the 5th consecutive fetch** since the 2026-08-31 cluster, **5 calendar days stale**. **No new vault mtime changes** — the 4 untracked vault directories / files from the 2026-09-04T18:12Z fetch carry forward with bumped carry-forward counts: `Review/zhou2023_computer_vision_microfluidics.md` **24-day → 25-day carry-forward** (**22 → 23 fetches silent**, **one-off interpretation confirmed at 2026-08-28 fetch** per the 2026-08-27 fetch confirmation, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + **2026-09-05** fetches; entry remains a stale / not recurring carry-forward note) + `celvivo_commercial/` + `templates/` **19-day → 20-day carry-forward** (**both confirmed one-off alongside the `Review/` entry at the 2026-08-28 fetch**, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + **2026-09-05** fetches; **19 fetches silent** on each) + `deepread_40240593/` **12-day → 13-day carry-forward** (the directory mtime is still **2026-08-24 16:31 +0800** at the 2026-09-05T18:18Z fetch, mtime unchanged across the 2026-08-25 + 2026-08-26 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + **2026-09-05** fetches — **12 consecutive silent fetches** since the 2026-08-24/25 burst, **13 fetches silent on directory mtime**; working-folder pipeline hypothesis continuing to weaken — the entry should remain a stale / not recurring carry-forward note on the next synthesis pass alongside the other 3 entries). **Wiki HEAD** bumped from `88635edc7a35488280cf4cbf87750f6ac5e517ed` (2026-09-04T18:12Z fetch) to **`0be3b8a3a44194ad947c3b1a14440f3d12d278d3`** (2026-09-05T18:18Z fetch); **2 new automated wiki commits** in the 2026-09-04T18:12Z → 2026-09-05T18:18Z 24-hour window: (a) `ca1acf8` chore: daily update 2026-09-05 (2026-09-05T02:?? +0800; per `git show --stat ca1acf8` the commit touched **16 files** from the prior dirty set including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — reducing uncommitted-file count from 10 → ~5) + (b) `0be3b8a` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-05, 2026-09-05T02:30 +0800 — the **twenty-second** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + `bd30339` 2026-08-20 + `f6c2576` 2026-08-21 + `43d4548` 2026-08-22 + `8f8f767` 2026-08-23 + `127c2dc` 2026-08-24 + `1003b92` 2026-08-25 + `ebb95c0` 2026-08-26 + `502281f` 2026-08-27 + `c992dd6` 2026-08-28 + `37d1ba6` 2026-08-29 + `d56da3a` 2026-08-30 + `9582dea` 2026-08-31 + `0890fdb` 2026-09-01 + `cedbb7f` 2026-09-02 + `58168e7` 2026-09-03 + `88635ed` 2026-09-04 + now `0be3b8a` 2026-09-05; per `git show --stat 0be3b8a` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files that the `ca1acf8` daily update had cleared were re-touched by the sources-sync that landed later in the window). **11 uncommitted wiki files** in working tree per the manifest `changedFiles` list at this fetch (`M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) — **1 more than the 2026-09-04T18:12Z fetch's 10-dirty-file baseline** because the `ca1acf8` daily update cycle on 2026-09-05 re-touched `sources/index.md` (the 2026-09-04 daily update had not) and the `0be3b8a` Line truncated
**Latest update — git-repo-1 (2026-09-04T18:12Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-09-04T18-12-59-869Z/manifest.json`. **Vault HEAD unchanged** at `391e47131679ce9edf0f525236e78ebb13e0d232` (same as the 2026-09-03T18:09Z + 2026-09-02T18:16Z + 2026-09-01T18:07Z + 2026-08-31T18:09Z fetches) — **0 new vault commits** in the 2026-09-03T18:09Z → 2026-09-04T18:12Z 24-hour window; the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR cluster (Yan 2024 + Stewart 2023 + Nguyen 2024 + Aiello 2025 + Miao 2025, all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity. **Vault silent for the 4th consecutive fetch** since the 2026-08-31 cluster, **4 calendar days stale**. **No new vault mtime changes** — the 4 untracked vault directories / files from the 2026-09-03T18:09Z fetch carry forward with bumped carry-forward counts: `Review/zhou2023_computer_vision_microfluidics.md` **23-day → 24-day carry-forward** (**21 → 22 fetches silent**, **one-off interpretation confirmed at 2026-08-28 fetch** per the 2026-08-27 fetch confirmation, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + **2026-09-04** fetches; entry remains a stale / not recurring carry-forward note) + `celvivo_commercial/` + `templates/` **18-day → 19-day carry-forward** (**both confirmed one-off alongside the `Review/` entry at the 2026-08-28 fetch**, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + **2026-09-04** fetches; **18 fetches silent** on each) + `deepread_40240593/` **11-day → 12-day carry-forward** (the directory mtime is still **2026-08-24 16:31 +0800** at the 2026-09-04T18:12Z fetch, mtime unchanged across the 2026-08-25 + 2026-08-26 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + **2026-09-04** fetches — **11 consecutive silent fetches** since the 2026-08-24/25 burst, **12 fetches silent on directory mtime**; working-folder pipeline hypothesis continuing to weaken — the entry should remain a stale / not recurring carry-forward note on the next synthesis pass alongside the other 3 entries). **Wiki HEAD** bumped from `58168e7a4c10b5e29c76e7dad5544878c3a9132b` (2026-09-03T18:09Z fetch) to **`88635edc7a35488280cf4cbf87750f6ac5e517ed`** (2026-09-04T18:12Z fetch); **2 new automated wiki commits** in the 2026-09-03T18:09Z → 2026-09-04T18:12Z 24-hour window: (a) `ab49afd` chore: daily update 2026-09-04 (2026-09-04T02:?? +0800; per `git show --stat ab49afd` the commit touched **14 files** from the prior dirty set including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` — reducing uncommitted-file count from 11 → ~5) + (b) `88635ed` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-04, 2026-09-04T02:30 +0800 — the **twenty-first** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + `bd30339` 2026-08-20 + `f6c2576` 2026-08-21 + `43d4548` 2026-08-22 + `8f8f767` 2026-08-23 + `127c2dc` 2026-08-24 + `1003b92` 2026-08-25 + `ebb95c0` 2026-08-26 + `502281f` 2026-08-27 + `c992dd6` 2026-08-28 + `37d1ba6` 2026-08-29 + `d56da3a` 2026-08-30 + `9582dea` 2026-08-31 + `0890fdb` 2026-09-01 + `cedbb7f` 2026-09-02 + `58168e7` 2026-09-03 + now `88635ed` 2026-09-04; per `git show --stat 88635ed` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files that the `ab49afd` daily update had cleared were re-touched by the sources-sync that landed later in the window). **10 uncommitted wiki files** in working tree per the manifest `changedFiles` list at this fetch (`M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) — **1 fewer than the 2026-09-03T18:09Z fetch's 11-dirty-file baseline** because the `88635ed` sources-sync re-touched only 4 source-sync files net while the `ab49afd` daily update cleared more of the prior 11-dirty set than the sources-sync re-touched; the CLI metadata cycle re-touched `themes.md` + `.last-update.json` + `index.md` + `qLine truncated
moted to stale / not recurring carry-forward notes per the 2026-08-28 demotion, and the entries should remain demoted rather than promoted back to active watchlist status. Prior run was **git-repo-1 (2026-09-03T18:09Z)** — see the prior paragraph.
+4 -4
View File
@@ -2,8 +2,8 @@
type: "Reference"
title: "Sources"
description: "Per-connector evidence indexes and ingestion coverage for the local knowledge wiki; durable synthesis lives on canonical pages."
tags: [sources, connectors, evidence, ingestion, 2026-09-12, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, vault-silent-7d, vault-silent-8d, vault-silent-9d, vault-silence-broken, vault-resumed-after-11d, twenty-fourth-sources-sync, twenty-fifth-sources-sync, twenty-sixth-sources-sync, twenty-seventh-sources-sync, twenty-eighth-sources-sync, ninth-vault-silence-fetch, twenty-sixth-git-repo-fetch, twenty-ninth-git-repo-fetch, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, thirtieth-websearch-skip]
timestamp: 2026-09-12T18:14:00Z
tags: [sources, connectors, evidence, ingestion, 2026-09-13, 2026-09-12, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, vault-silent-7d, vault-silent-8d, vault-silent-9d, vault-silence-broken, vault-resumed-after-11d, twenty-fourth-sources-sync, twenty-fifth-sources-sync, twenty-sixth-sources-sync, twenty-seventh-sources-sync, twenty-eighth-sources-sync, twenty-ninth-sources-sync, thirtieth-sources-sync, ninth-vault-silence-fetch, twenty-sixth-git-repo-fetch, twenty-ninth-git-repo-fetch, thirty-first-git-repo-fetch, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, thirtieth-websearch-skip, moc-organoid-3d-culture-uncommitted-edit]
timestamp: 2026-09-13T18:08:00Z
---
# Sources
@@ -15,7 +15,7 @@ Per-connector evidence indexes. Each connector gets its own page (for example `g
| Connector | Page | Status |
| --- | --- | --- |
| Hacker News (`hackernews-1`, LLM-agent topics) | [/sources/hackernews.md](/sources/hackernews.md) | active (last 2026-09-12 18:00 UTC — **33rd pull since 2026-08-07**, surfacing the **1st `substring-noise-only Algolia lane on 4 of 6 + clean zero on 2 of 6` pull** after the 2026-09-11 prior fully-zero pull + the 2026-09-10 prior substring-noise-on-3-of-6 pull — `organoid` 1 substring-noise hit on `organis-` (`OpenAI agents carried out an undisclosed attack on RubyGems` 889 pts + 524 cmts — **3rd-highest single-item of the entire 2026-08-07 streak** after 2026-09-04 GPT-6 Astra 2080 pts + 2026-08-27 Nvidia-HF 1719 pts; off-scope per scope — supply-chain security incident writeup) + `openwiki` 1 substring-noise hit on `wiki` (`Show HN: ilands.ai — multi-agent supervisor UI for your agents` 78 pts; off-scope per scope — hosted multi-agent supervisor UI) + `deepagents` 1 substring-noise hit on `agent` (same OpenAI agents RubyGems item surfaced via the `deepagents` query — does not contain the literal `deepagents` substring); `CelVivo` + `3Brain` + `Cellink` returned clean `nbHits=null / hits=0`; `organoid` `nbHits=null / hits=0` confirms the OpenAI agents RubyGems item is a substring-noise false positive on `organis-`; **23 unique top+best items** (top 16/30 + best 12/30 - 5 overlap: `49666735` OpenAI agents RubyGems + `49670542` "We must pace the frontier" + `49671406` Anthropic settles + `49670125` "Nvidia is the central bank of AI" + `49672510` Dario Amodei essay — the 23-item dedup count is the **lowest single-day dedup count of the 2026-08-07 streak since the 2026-09-01 25-item dedup pull**, driven by a less-populated 24-hour window with `top` 16/30 = **lowest `top` resolution of the 2026-08-07 streak since the 2026-09-04 pull**); **5-overlap count of 5 is the highest of the 2026-08-07 streak since the 2026-09-08 pull**). **3 new entries adjacent-not-promoted into the AI-vendor-business-stack cluster** — **`49670898` "Anthropic Claude Skills"** (175 pts best + 113 cmts, by `alexlan` 2026-09-12, https://docs.claude.com/en/docs/agents-and-tools/agent-skills/overview — Anthropic's new Skills framework for Claude agents; cross-walks to Hermes Agent skills-file + Codex CLI skills-file + OpenClaw skill folder + OpenWiki 4 bridge skills documented in `/sources/OpenWiki速查手册.md` §5; **adjacent-not-promoted per scope** because Anthropic is not on Robin's named stack + the entry is a vendor skill framework rather than a vendor release that affects Robin's named-stack daily-driver strategy) + **`49670542` "Show HN: We must pace the frontier — Dario Amodei"** (206 pts top + 278 cmts top, by `apsec112` 2026-09-12, https://darioamodei.com/post/we-must-pace-the-frontier — **Anthropic CEO Dario Amodei blog post** on AI development pacing; **would-be 12th AI-vendor-business-stack cluster entry candidate** at 206-pt engagement (well above the 100-pt typical cluster entry bar) joining the 2026-09-05 Anthropic FLT formalization 706 pts + the 2026-09-10 OpenAI training-toggle 383 pts + OpenAI proof-stolen 283 pts + OpenAI unpublished math 210 pts + the 2026-09-11 OpenAI Agents API 333 pts; cluster would grow from 10 items / ~4,104+ pts to **12 items / ~4,310+ pts across 10 pulls over 13 days** if promoted, but **adjacent-not-promoted per scope** because Anthropic is not on Robin's named stack + the entry is an AI-policy essay rather than a vendor privacy / IP / business-stack signal) + **`49671406` "Anthropic settles [copyright lawsuit]"** (96 pts top + 0 cmts, by `beefman` 2026-09-12, https://www.reuters.com/legal/litigation/anthropic-settles — Reuters legal-litigation report; **96-pt engagement is below the 100-pt typical cluster entry bar**; **adjacent-not-promoted per scope** because engagement is below the cluster entry bar + Anthropic is not on Robin's named stack + the entry is a legal-litigation report); **AI-vendor-business-stack cluster total stays at ~4,104+ pts across 10 items in 8 pulls over 11 days**). The **`MiniMax-m3` row on `/themes.md` gets a description refresh** to mention the 2026-09-12 33rd pull + the **1st substring-noise-only-on-4-of-6 Algolia lane** + the **23-item dedup count** (lowest of the streak since the 2026-09-01 25-item dedup pull) + the **5-overlap count of 5** + the **3 new entries adjacent-not-promoted into the AI-vendor-business-stack cluster** (Anthropic Skills + Anthropic CEO pacing blog + Anthropic copyright settlement); the prior 2026-09-11 row refresh from `49649213` OpenAI Agents API 11th business-stack candidate (adjacent-not-promoted per scope) + the prior 2026-09-10 row refresh from 3 new OpenAI entries (training-toggle 8th + proof-stolen 9th + unpublished-math 10th) + the prior 2026-09-05 row refresh from `49570545` GPT-6 Astra on OpenRouter 5th closed-weight-cluster entry + the prior 2026-09-04 row refresh from `49554520` Qwen 3.8 27B on Cerebras 15th open-weight-cluster entry + the prior 2026-09-03 K2 Horizon 14th + 2026-09-02 M4-Pro-Mac-MinLine truncated
| Git repo (`git-repo-1`, Obsidian vault + OpenWiki wiki) | [/sources/git-repo.md](/sources/git-repo.md) | active (last 2026-09-11 18:14 UTC — **vault HEAD bumped** from `391e4713` → **`09bec367`** with **2 new vault commits** ending the **11-day vault silence streak**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); the 4 carry-forward untracked directories bumped carry-forward at the 2026-09-11T18:14Z fetch to **30/25/25/18-day** (the highest carry-forward durations of the 2026-08-07 streak); **4 new automated wiki commits** since the 2026-09-09T18:11Z fetch (`299eeab` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync + `1e6a7cb` chore: daily update 2026-09-10 + `2bf104e` chore: daily update 2026-09-11 + `55d930f` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the count-data wipe pattern after `299eeab` 2026-09-10 + `7e2072c` 2026-09-09 + `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15); wiki HEAD bumped `7e2072cef52a842ccde9daab27ad82699c9e127c` → `55d930ffbc0a658aa335683f0d412496b32af549` over the 2026-09-10T18:19Z → 2026-09-11T18:14Z window; the `55d930f` sources-sync on 2026-09-11 re-touched `sources/{nocodb,ragflow,seafile,wikijs}.md` and the synthesis edits left **10 uncommitted wiki files** (`M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) — **10-dirty-file baseline, same as the 2026-09-10T18:19Z fetch** + **1 new untracked `NO` file** (stray test artifact); the synthesis layer is **substantively updated** because vault produced 2 new external-evidence papers (Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering) — the `class-organoid-3d-bioprinting` row on `/themes.md` gets a Last-seen bump 2026-08-25 → 2026-09-11 + Evidence count 37+ → 39+. Prior 2026-09-10 sources-sync `299eeab` (the **twenty-seventh** consecutive sources-sync) bumped wiki HEAD to `299eeab`; the prior 2026-09-09 daily update `f7450e9` + 2026-09-09 sources-sync `7e2072c` (the **twenty-sixth** consecutive sources-sync) bumped wiki HEAD to `7e2072c`; the 2026-08-31 daily update `c9e2770` (single-connector raw-data refresh combining HN-1 + git-repo-1 + web-search-1 skipped) + 2026-08-31 sources-sync `9582dea` (the **seventeenth** consecutive sources-sync) bumped wiki HEAD to `9582dea` + bumped dirty count to 11; the 2026-08-31 git-repo-1 fetch (vault HEAD bumped `9d4767c7` → `391e4713`, 5 new vault commits, ending the 5-day vault silence) is the THIRD consecutive single-day 5-paper CelVivo LDR burst (Yan + Stewart + Nguyen + Aiello + Miao all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V parallel subfolder — Robin's first parallel-naming deep-read subfolder convention) — see [`/sources/git-repo.md`](/sources/git-repo.md) for the full 2026-08-31 fetch delta; the 2026-09-01T18:07Z + 2026-09-02T18:16Z + 2026-09-03T18:09Z + 2026-09-04T18:12Z + 2026-09-05T18:18Z + 2026-09-06T18:19Z + 2026-09-07T18:08Z + 2026-09-08T18:07Z + 2026-09-09T18:11Z + 2026-09-10T18:19Z fetches observed vault HEAD unchanged at `391e4713` for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th + **10th** consecutive fetch since the 2026-08-31 cluster (**0 new vault commits**, **10 calendar days stale** at the 2026-09-10T18:19Z fetch), bumped the 4 carry-forward untracked directories to 30/24/24/17-day carry-forward at the 2026-09-10T18:19Z fetch (the highest carry-forward durations of the 2026-08-07 streak), bumped wiki HEAD to `299eeab31926fd8a3afd9e9feb510a21db7a69db` via 1 automated wiki commit at the 2026-09-10T18:19Z fetch (`299eeab` sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync); the synthesis layer (themes / commitments / open-questions / personal-logistics) was unchanged at each of these vault-silent fetches because vault produced no new external evidence; **the 2026-09-11T18:14Z fetch observes the vault-silence-streak-broken event** with 2 new vault commits — the synthLine truncated
| Git repo (`git-repo-1`, Obsidian vault + OpenWiki wiki) | [/sources/git-repo.md](/sources/git-repo.md) | active (last 2026-09-13 18:08 UTC — **31st git-repo-1 fetch** since 2026-08-07 — **vault HEAD unchanged** at `09bec367` for the 2nd consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption; **1 working-tree modification** at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800; Robin actively editing MOC index file but not yet committed) — Robin is back to actively editing the vault but the edit has not yet been committed; the 4 carry-forward untracked directories bumped carry-forward at the 2026-09-13T18:08Z fetch to **32/27/27/20-day** (the highest carry-forward durations of the 2026-08-07 streak); **4 new automated wiki commits** in the 48-hour window (`7cfb801` sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync + `999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 + `5f33bd3` sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync); wiki HEAD bumped `55d930ffbc0a658aa335683f0d412496b32af549` → `5f33bd3`; the `5f33bd3` sources-sync on 2026-09-13 re-touched `sources/{nocodb,ragflow,seafile,wikijs}.md` and the synthesis edits left **8 uncommitted wiki files** — `M .last-update.json` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` — **8-dirty-file baseline (down from prior 10-dirty baseline)**; the synthesis layer is **unchanged** because the vault delta is empty (no new commits) — the MOC-file edit is uncommitted and does not affect synthesis-layer pages until the commit lands. Prior 2026-09-11 fetch (the **thirtieth git-repo-1 fetch** of the 2026-08-07 streak) observed the **vault-silence-streak-broken event** with 2 new vault commits — Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering (the first v4 Flywheel auto-sink pipeline entry) — and was the previous substantively-updated fetch. The 2026-09-12 + 2026-09-13 fetches are vault-silent fetches where the wiki delta is automated maintenance only. See [`/sources/git-repo.md`](/sources/git-repo.md) for the full delta. |
| Web Search (`web-search-1`, Tavily) | [/sources/web-search.md](/sources/web-search.md) | active (latest pull 2026-08-03; 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, 2026-08-19, 2026-08-20, 2026-08-21, 2026-08-22, 2026-08-23, 2026-08-24, 2026-08-25, 2026-08-27, 2026-08-28, 2026-08-29, 2026-08-30, 2026-08-31, 2026-09-01, 2026-09-02, 2026-09-03, 2026-09-04, 2026-09-05, 2026-09-06, 2026-09-07, 2026-09-08, 2026-09-09, 2026-09-10, 2026-09-11, and 2026-09-12 update attempts skipped — connector not enabled, `TAVILY_API_KEY` missing; **thirtieth consecutive skip on the same code path** including 2026-09-12) |
Additional connectors appear here automatically once they are authenticated and ingested at least once.
@@ -30,7 +30,7 @@ Additional connectors appear here automatically once they are authenticated and
| X / Twitter | not configured | `OPENWIKI_X_ACCESS_TOKEN` via `openwiki auth x` | Streams: `home_timeline`, `user_posts`, `mentions`, `bookmarks`, `list_posts`. |
| Web Search | **active** (`web-search-1`) | `TAVILY_API_KEY` (currently empty) | Tavily via LangChain; reads configured queries. Latest successful pull 2026-08-03 18:08 UTC; the 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, 2026-08-19, 2026-08-20, 2026-08-21, 2026-08-22, 2026-08-23, 2026-08-24, 2026-08-25, 2026-08-27, 2026-08-28, 2026-08-29, 2026-08-30, 2026-08-31, 2026-09-01, 2026-09-02, 2026-09-03, 2026-09-04, 2026-09-05, 2026-09-06, 2026-09-07, 2026-09-08, 2026-09-09, 2026-09-10, 2026-09-11, and 2026-09-12 update attempts were skipped because the connector was not enabled in the runtime registry (**thirtieth consecutive skip on the same code path** including 2026-09-12; nightly searxng-fallback slot for the 24-hour windows is also empty on disk). Evidence at [/sources/web-search.md](/sources/web-search.md). |
| Hacker News | **active** (`hackernews-1`) | _(public, no auth)_ | Public feeds (`top`, `new`, `best`) + Algolia HN search queries. Source-specific query set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` (LLM-agent topics per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories"). Last successful pull 2026-09-12 18:00 UTC — **33rd pull since 2026-08-07**, surfacing the **1st `substring-noise-only Algolia lane on 4 of 6 + clean zero on 2 of 6` pull** (`organoid` 1 substring-noise hit on `organis-` (`OpenAI agents carried out an undisclosed attack on RubyGems` 889 pts + 524 cmts — **3rd-highest single-item of the entire 2026-08-07 streak**; off-scope per scope — supply-chain security incident writeup) + `openwiki` 1 substring-noise hit on `wiki` (`Show HN: ilands.ai — multi-agent supervisor UI` 78 pts; off-scope per scope — hosted multi-agent supervisor UI) + `deepagents` 1 substring-noise hit on `agent` (same OpenAI agents RubyGems item — substring-noise false positive on `agent`); `CelVivo` + `3Brain` + `Cellink` returned clean `nbHits=null / hits=0`; **23 unique top+best items** — the **lowest single-day dedup count of the 2026-08-07 streak since the 2026-09-01 25-item dedup pull**). **3 new entries adjacent-not-promoted into the AI-vendor-business-stack cluster** — **`49670898` "Anthropic Claude Skills"** (175 pts + 113 cmts best, by `alexlan` 2026-09-12, https://docs.claude.com/en/docs/agents-and-tools/agent-skills/overview — Anthropic's new Skills framework for Claude agents; cross-walks to Hermes Agent skills-file + Codex CLI skills-file + OpenClaw skill folder + OpenWiki 4 bridge skills documented in `/sources/OpenWiki速查手册.md` §5; **adjacent-not-promoted per scope** because Anthropic is not on Robin's named stack + the entry is a vendor skill framework rather than a vendor release that affects Robin's named-stack daily-driver strategy) + **`49670542` "We must pace the frontier"** (206 pts top + 278 cmts top, by `apsec112` 2026-09-12, https://darioamodei.com/post/we-must-pace-the-frontier — **Anthropic CEO Dario Amodei blog post** on AI development pacing; **would-be 12th AI-vendor-business-stack cluster entry candidate** at 206-pt engagement (well above the 100-pt typical cluster entry bar) joining the 2026-09-05 Anthropic FLT formalization 706 pts + the 2026-09-10 OpenAI training-toggle 383 pts + OpenAI proof-stolen 283 pts + OpenAI unpublished math 210 pts + the 2026-09-11 OpenAI Agents API 333 pts; cluster would grow from 10 items / ~4,104+ pts to **12 items / ~4,310+ pts across 10 pulls over 13 days** if promoted, but **adjacent-not-promoted per scope** because Anthropic is not on Robin's named stack + the entry is an AI-policy essay rather than a vendor privacy / IP / business-stack signal) + **`49671406` "Anthropic settles [copyright lawsuit]"** (96 pts top + 0 cmts, by `beefman` 2026-09-12, https://www.reuters.com/legal/litigation/anthropic-settles — Reuters legal-litigation report; **96-pt engagement is below the 100-pt typical cluster entry bar**; **adjacent-not-promoted per scope** because engagement is below the cluster entry bar + Anthropic is not on Robin's named stack + the entry is a legal-litigation report); **AI-vendor-business-stack cluster total stays at ~4,104+ pts across 10 items in 8 pulls over 11 days**). **The highest-engagement item of the pull** is **`49666735` "OpenAI agents carried out an undisclosed attack on RubyGems"** (889 pts best + 524 cmts — off-scope per scope); the **`49670125` "Nvidia is the central bank of AI"** (168 pts top+best + 143 cmts, by `tolugenius` 2026-09-12, https://www.economist.com/interactive/briefing/2026/09/03/nvidia-is-the-central-bank-of-ai — The Economist interactive briefing on Nvidia's role in AI economics; **adjacent-not-promoted per scope** because Nvidia is not on Robin's named daily-driver stack + the entry is an Economist feature rather than a vendor release; cross-walks to the open-weight-LLM cluster's open-weight-infrastructure axis via the Nvidia wafer-scale narrative but does not promote the cluster); **Tavily (web-search) remains the productive lane for vendor news**. Prior pull 2026-08-27 18:00 UTC — **seventeenth pull since 2026-08-07** with a **substring-noise-only + 1 thematic `deepagents` hit Algolia lane** (after the 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 + 2026-08-15 + 2026-08-16 + 2026-08-18 + 2026-08-19 + 2026-08-21 + 2026-08-23 + 2026-08-24 + 2026-08-25 + 2026-08-26 fully-zero pulls + the 2026-08-10 + 2026-08-12 + 2026-08-17 + 2026-08-20 + 2026-08-22 + 2026-08-27 noise-only pulls; the **2026-08-23 + 2026-08-24 + 2026-08-25 + 2026-08-26 fully-zero Algolia lanes form a 4-day streak**, the **longest fully-zero Algolia streak of the 2026-08-07 streak to date**, bookended by the 2026-08-22 + 2026-08-27 substring-noise-only pulls; empty-pulls-on-vendor-queries is normal cadence, not an outage, no config-Line truncated
| Git repo | **active** (`git-repo-1`) | local repo path | Local Obsidian vault at `/home/ldw/workspace` + OpenWiki wiki at `/home/ldw/.openwiki/wiki` (two configured repos per `~/.openwiki/connectors/git-repo/config.json`). Writes compact manifest; repo itself is source of truth. Evidence at [/sources/git-repo.md](/sources/git-repo.md). Last updated 2026-09-11 18:14 UTC — **vault HEAD bumped** from `391e4713` → **`09bec36702cdbd8ef1d2644919ca337248ae6bff`** with **2 new vault commits** in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window, **vault silence streak BROKEN after 11 calendar days**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); the 4 carry-forward untracked directories bumped carry-forward at the 2026-09-11T18:14Z fetch to **30/25/25/18-day** (the highest carry-forward durations of the 2026-08-07 streak); **4 new automated wiki commits** since the 2026-09-09T18:11Z fetch (`299eeab` sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync + `1e6a7cb` chore: daily update 2026-09-10 + `2bf104e` chore: daily update 2026-09-11 + `55d930f` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the count-data wipe pattern); wiki HEAD bumped `7e2072cef52a842ccde9daab27ad82699c9e127c` → `55d930ffbc0a658aa335683f0d412496b32af549` over the 2026-09-10T18:19Z → 2026-09-11T18:14Z window; the `55d930f` sources-sync on 2026-09-11 re-touched `sources/{nocodb,ragflow,seafile,wikijs}.md` and the synthesis edits left **10 uncommitted wiki files** (`M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) — **10-dirty-file baseline, same as the 2026-09-10T18:19Z fetch** + **1 new untracked `NO` file** (stray test artifact); the synthesis layer is **substantively updated** because vault produced 2 new external-evidence papers — the `class-organoid-3d-bioprinting` row on `/themes.md` gets a Last-seen bump 2026-08-25 → 2026-09-11 + Evidence count 37+ → 39+. The 2026-08-31 daily update `c9e2770` (single-connector raw-data refresh combining HN-1 + git-repo-1 + web-search-1 skipped) + 2026-08-31 sources-sync `9582dea` (the **seventeenth** consecutive sources-sync) bumped wiki HEAD to `9582dea` + bumped dirty count to 11; the 2026-08-31 git-repo-1 fetch (vault HEAD bumped `9d4767c7` → `391e4713`, 5 new vault commits, ending the 5-day vault silence) is the THIRD consecutive single-day 5-paper CelVivo LDR burst (Yan + Stewart + Nguyen + Aiello + Miao all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V parallel subfolder — Robin's first parallel-naming deep-read subfolder convention). The 2026-09-01T18:07Z + 2026-09-02T18:16Z + 2026-09-03T18:09Z + 2026-09-04T18:12Z + 2026-09-05T18:18Z + 2026-09-06T18:19Z + 2026-09-07T18:08Z + 2026-09-08T18:07Z + 2026-09-09T18:11Z + 2026-09-10T18:19Z fetches observed vault HEAD unchanged at `391e4713` for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th + **10th** consecutive fetch since the 2026-08-31 cluster (**0 new vault commits**, **10 calendar days stale** at the 2026-09-10T18:19Z fetch); the 2026-09-11T18:14Z fetch observes the **vault-silence-streak-broken** event with 2 new vault commits — the synthesis layer is **substantively updated** for the first time since the 2026-08-31 cluster. |
| Git repo | **active** (`git-repo-1`) | local repo path | Local Obsidian vault at `/home/ldw/workspace` + OpenWiki wiki at `/home/ldw/.openwiki/wiki` (two configured repos per `~/.openwiki/connectors/git-repo/config.json`). Writes compact manifest; repo itself is source of truth. Evidence at [/sources/git-repo.md](/sources/git-repo.md). Last updated 2026-09-13 18:08 UTC — **vault HEAD unchanged** at `09bec36702cdbd8ef1d2644919ca337248ae6bff` for the 2nd consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption (vault silence streak BROKEN after 11 calendar days at the prior fetch); **1 working-tree modification** at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800; Robin actively editing MOC index file but not yet committed); the 4 carry-forward untracked directories bumped to **32/27/27/20-day** carry-forward at the 2026-09-13T18:08Z fetch (the highest carry-forward durations of the 2026-08-07 streak); **4 new automated wiki commits** since the 2026-09-09T18:11Z fetch (`7cfb801` sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync + `999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 + `5f33bd3` sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync); wiki HEAD bumped `55d930f` → `5f33bd3`; the `5f33bd3` sources-sync on 2026-09-13 re-touched `sources/{nocodb,ragflow,seafile,wikijs}.md` and the synthesis edits left **8 uncommitted wiki files** — `M .last-update.json` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` — **8-dirty-file baseline (down from prior 10-dirty baseline)**; the synthesis layer is unchanged because vault delta is empty (no new commits). The 2026-09-11T18:14Z fetch (the prior substantively-updated fetch) observed the **vault-silence-streak-broken event** with 2 new vault commits — `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); the synthesis layer was substantively updated because vault produced 2 new external-evidence papers — the `class-organoid-3d-bioprinting` row on `/themes.md` got a Last-seen bump 2026-08-25 → 2026-09-11 + Evidence count 37+ → 39+. The 2026-08-31 git-repo-1 fetch (vault HEAD bumped `9d4767c7` → `391e4713`, 5 new vault commits, ending the 5-day vault silence) is the THIRD consecutive single-day 5-paper CelVivo LDR burst (Yan + Stewart + Nguyen + Aiello + Miao all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V parallel subfolder — Robin's first parallel-naming deep-read subfolder convention). |
## How new source pages get created
+59 -20
View File
@@ -1,9 +1,30 @@
---
type: "Reference"
title: "Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)"
description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff`, 2026-09-11, **vault HEAD bumped `391e4713` → `09bec367`** in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window, **vault silence streak BROKEN after 11 calendar days** — **2 new vault commits** since the 2026-08-31T18:09Z THIRD consecutive 5-paper CelVivo LDR cluster: `1fd63019` 2026-09-10 `feat(literature): Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read` adding `04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md` (Western University HGSC ovarian-cancer precision-medicine deep-read, **0 vendor callouts**, `?? 0` per vendor-mapping discipline, no 3Brain reference per SOP cleanup rule) + `09bec367` 2026-09-11 `literature: 精读 NocoDB Id=3029 Air-liquid interface-centered oxygen engineering in human br (飞轮 v4 自动 sink)` adding `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md` (brain-organoid ALI oxygen engineering — first paper routed through the v4 Flywheel auto-sink pipeline)); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 29 → **30-day carry-forward** (27 → **28 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 24 → **25-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + **2026-09-11** fetches), `deepread_40240593/` 17 → **18-day carry-forward** (mtime unchanged across **17 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `55d930ffbc0a658aa335683f0d412496b32af549`, 2026-09-11, **4 new automated wiki commits in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window: `299eeab` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `7e2072c` 2026-09-09 + `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15) committed `sources/{nocodb,ragflow,seafile,wikijs}.md`, then `1e6a7cb` chore: daily update 2026-09-10 (per `git show --stat 1e6a7cb` the commit touched 14 files including `.last-update.json` + `open-questions.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md`), then `2bf104e` chore: daily update 2026-09-11 (per `git show --stat 2bf104e` the commit touched 12 files including `.last-update.json` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + additional files), then `55d930f` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern); the very next synthesis edits from the HN-1 2026-09-11 + web-search-1 2026-09-11 (skipped) + this git-repo-1 2026-09-11T18:14Z run re-touched files leaving the dirty count at **10 per the manifest `changedFiles` list** — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` — **same shape as the 2026-09-10T18:19Z fetch (10-dirty-file baseline)** because the `55d930f` sources-sync on 2026-09-11 re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) that the prior daily updates had cleared via commit, plus the CLI metadata cycle re-touched `index.md` + `quickstart.md` (carrying over from the prior metadata cycle) + `.last-updateLine truncated
description: >
Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested
through the local git-repo connector. **Latest fetch (2026-09-13T18:08Z — 31st
git-repo-1 fetch since 2026-08-07): vault HEAD unchanged at `09bec367` for the
2nd consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption; wiki
HEAD bumped `55d930f` → `5f33bd3` via 4 new automated wiki commits (`7cfb801`
sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync +
`999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 +
`5f33bd3` sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync);
1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13
11:55:42 +0800); 8-dirty-file baseline (down from 10-dirty at the 2026-09-11
fetch); carry-forward bump 30/25/25/18 → 32/27/27/20-day.** Two configured
repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `09bec367`,
2026-09-11, vault silence streak BROKEN after 11 calendar days with 2 new
commits — Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen
engineering, the first v4 Flywheel auto-sink pipeline entry); and openwiki-wiki
at /home/ldw/.openwiki/wiki (main branch, HEAD `5f33bd3`, 2026-09-13,
bumped from `55d930f` via 4 automated commits in the 48-hour window —
`7cfb801` sources-sync twenty-ninth + `999a37d` daily update + `0447186`
daily update + `5f33bd3` sources-sync thirtieth). This page is a navigation
index — content ingestion (paper deep reads, sales scripts, customer files)
happens via the Hermes skill and RAGFlow, not here.
tags: [sources, git-repo, vault, wiki, manifest, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, vault-silence-broken, vault-resumed-after-11d, twenty-seventh-sources-sync, twenty-eighth-sources-sync, twenty-ninth-git-repo-fetch, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, wiki-4-new-commits, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-eighteen-silent-fetches]
timestamp: 2026-09-11T18:14:00Z
timestamp: 2026-09-13T18:08:00Z
---
# Git repo — evidence index
@@ -15,27 +36,27 @@ This page is the **compact source-evidence index** for the local git-repo connec
- Connector config path: `~/.openwiki/connectors/git-repo/config.json`
- Two configured local repos:
- `obsidian-vault` at `/home/ldw/workspace` (branch: `main`, HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff`, 2026-09-11 — **37 commits since 2026-08-03 fetch**, +2 since 2026-09-09T18:11Z fetch)
- `openwiki-wiki` at `/home/ldw/.openwiki/wiki` (branch: `main`, HEAD `55d930ffbc0a658aa335683f0d412496b32af549`, 2026-09-11 — bumped from `7e2072c` via 4 automated commits)
- `openwiki-wiki` at `/home/ldw/.openwiki/wiki` (branch: `main`, HEAD `5f33bd3`, 2026-09-13 — bumped from `55d930f` via 4 automated commits in the 48-hour window)
- Authentication: local path only — no remote, no credentials
## Latest manifest
- `~/.openwiki/connectors/git-repo/raw/2026-09-11T18-14-12-972Z/manifest.json` (generated 2026-09-11T18:14:13Z)
- Vault HEAD: `09bec36702cdbd8ef1d2644919ca337248ae6bff` (bumped from `391e4713` at 2026-09-11T18:14Z)
- Wiki HEAD: `55d930ffbc0a658aa335683f0d412496b32af549` (bumped from `7e2072c` at 2026-09-11)
- **2 new vault commits** in the 24-hour window (vault HEAD bumped `391e4713` → `09bec367`, **vault silence streak BROKEN** after 11 calendar days)
- **4 new automated wiki commits** in the 24-hour window (`299eeab` sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync + `1e6a7cb` daily update 2026-09-10 + `2bf104e` daily update 2026-09-11 + `55d930f` sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync)
- **10 uncommitted wiki files** in working tree per the manifest `changedFiles` list (same shape as the 2026-09-10T18:19Z fetch — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`)
- **`?? NO`** — new untracked wiki file (content `Has \n?: 0` — stray test artifact; no synthesis relevance)
- `~/.openwiki/connectors/git-repo/raw/2026-09-13T18-08-...-...Z/manifest.json` (generated 2026-09-13T18:08Z — **31st git-repo-1 fetch since 2026-08-07**)
- Vault HEAD: `09bec36702cdbd8ef1d2644919ca337248ae6bff` (**unchanged at `09bec367` for the 2nd consecutive fetch** after the 2026-09-11T18:14Z bump from `391e4713`)
- Wiki HEAD: `5f33bd3` (bumped from `55d930f` via 4 automated commits in the 48-hour window)
- **0 new vault commits** in the 48-hour window + **1 working-tree modification** at `M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"` (mtime 2026-09-13 11:55:42 +0800; Robin actively editing MOC index file but has not yet committed)
- **4 new automated wiki commits** in the 48-hour window (`7cfb801` sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync + `999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 + `5f33bd3` sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync)
- **8 uncommitted wiki files** in working tree per the manifest `changedFiles` list (down from the prior 10-dirty baseline — `M .last-update.json` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md`)
- **Carry-forward untracked-file bumps**: `Review/zhou2023_computer_vision_microfluidics.md` 30 → **32-day** (28 → **30 fetches silent**), `celvivo_commercial/` + `templates/` 25 → **27-day**, `deepread_40240593/` 18 → **20-day** (mtime unchanged across **19 consecutive silent fetches** since creation)
## Carry-forward untracked directories
| Directory / file | Carry-forward | Fetches silent | Status |
| --- | ---: | ---: | --- |
| `Review/zhou2023_computer_vision_microfluidics.md` | **30-day** | 28 | stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch) |
| `celvivo_commercial/` | **25-day** | 25 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
| `templates/` | **25-day** | 25 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
| `deepread_40240593/` | **18-day** | 17 | working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 17 consecutive silent fetches since creation) |
| `Review/zhou2023_computer_vision_microfluidics.md` | **32-day** | 30 | stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch) |
| `celvivo_commercial/` | **27-day** | 27 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
| `templates/` | **27-day** | 27 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
| `deepread_40240593/` | **20-day** | 19 | working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 19 consecutive silent fetches since creation) |
## Robin 8-07 added — untracked regional agent files (context only)
@@ -66,13 +87,26 @@ The 5 most recent vault commits are the new 2 (Tomas 2026 + Vijakumaran 2026) on
## Recent commits — wiki (last 5)
1. `55d930f` 2026-09-11 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11, **twenty-eighth** consecutive sources-sync)
2. `2bf104e` 2026-09-11 — chore: daily update 2026-09-11 (12 files modified per `git show --stat 2bf104e`)
3. `1e6a7cb` 2026-09-10 — chore: daily update 2026-09-10 (14 files modified per `git show --stat 1e6a7cb`)
4. `299eeab` 2026-09-10 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10, **twenty-seventh** consecutive sources-sync)
5. `7e2072c` 2026-09-09 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-09, **twenty-sixth** consecutive sources-sync)
1. `5f33bd3` 2026-09-13 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-13, **thirtieth** consecutive sources-sync)
2. `0447186` 2026-09-13 — chore: daily update 2026-09-13 (8 files modified per `git show --stat 0447186`)
3. `999a37d` 2026-09-12 — chore: daily update 2026-09-12 (16 files modified per `git show --stat 999a37d`)
4. `7cfb801` 2026-09-12 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-12, **twenty-ninth** consecutive sources-sync)
5. `55d930f` 2026-09-11 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11, **twenty-eighth** consecutive sources-sync)
## Synthesis-policy — this run
## Synthesis-policy — this run (2026-09-13T18:08Z)
- **Vault delta: 0 new vault commits + 1 working-tree modification** — vault HEAD unchanged at `09bec367` (the 2nd consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption). The only vault change is the MOC-file edit: `M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"` (mtime 2026-09-13 11:55:42 +0800) — Robin is actively editing the MOC index file but has not yet committed. This is the first vault working-tree modification since the 2026-08-24/25 burst (the 2026-08-31 cluster was an in-vault commit, not an uncommitted edit), and it routes through the MOC-folder rather than the `deepread_<slug>/` working-folder pipeline that the 2026-08-24/25 burst had hypothesized. The `deepread_40240593/` working folder is still silent (mtime unchanged across 19 consecutive silent fetches since the 2026-08-24 16:31 +0800 baseline).
- **Wiki delta: automated maintenance only** (CLI metadata cycle + sources-sync + daily update + sources-sync). The 4 new wiki commits in the 48-hour window are routine: 2 daily updates (`999a37d` + `0447186`) + 2 sources-syncs (`7cfb801` twenty-ninth + `5f33bd3` thirtieth). The wiki HEAD bump `55d930f` → `5f33bd3` covers 2 calendar days.
- **Dirty-file baseline change**: 10-dirty baseline (at 2026-09-11T18:14Z) → **8-dirty baseline** (at 2026-09-13T18:08Z). Different shape: `index.md` + `quickstart.md` + `sources/git-repo.md` + `themes.md` were cleared by the `999a37d` daily update; new `M sources/openwiki-version-drift.md` appeared. The 8-dirty-file list at 2026-09-13T18:08Z: `M .last-update.json` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md`.
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes that alter the synthesis-layer shape) and the wiki delta is automated maintenance only. The MOC-file working-tree edit is uncommitted; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-13T18:08Z)" paragraph + the description frontmatter mentions the 2026-09-13T18:08Z git-repo-1 fetch + the vault-unchanged state + the 4 new wiki commits (28th/29th/30th sources-sync sequence) + the 32/27/27/20-day carry-forward bump + the 8-dirty-file baseline + the MOC-file working-tree modification
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-13T18:08Z fetch; tags refreshed to add `2026-09-13`, `2026-09-12`, `twenty-ninth-sources-sync`, `thirtieth-sources-sync`, `thirtieth-git-repo-fetch`, `thirty-first-git-repo-fetch`, `deepread-40240593-twenty-silent-fetches`, `moc-organoid-3d-culture-uncommitted-edits`, `vault-working-tree-moc-modification-2026-09-13`; timestamp refreshed to `2026-09-13T18:08:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 32/27/27/20-day; Recent-commits-wiki table refreshed (4 new commits at top); this Synthesis-policy section added; Previous-run section updated
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-13T18:08Z fetch + the vault HEAD unchanged + the 4 new wiki commits + the 32/27/27/20-day carry-forward bump + the MOC-file working-tree modification; 04-Literature/Deep-Reads/ breakdown table refreshed with the 32/27/27/20-day carry-forward bump
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-13T18:08Z fetch + the vault HEAD unchanged + the 4 new wiki commits (28th/29th/30th sources-sync) + the 32/27/27/20-day carry-forward bump + the **31st git-repo-1 fetch** of the 2026-08-07 streak + the 8-dirty-file baseline
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-13T18:08Z fetch + the **thirtieth** consecutive sources-sync + the 8-dirty-file baseline + the 32/27/27/20-day carry-forward bump
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-13T18:08Z)" paragraph on `/quickstart.md` for the full delta list.
## Synthesis-policy — this run (2026-09-11T18:14Z)
- **Vault delta: 2 new vault commits** (Tomas 2026 + Vijakumaran 2026) — vault silence streak BROKEN after 11 calendar days since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster. Both new papers route through the standard `04-Literature/Deep-Reads/<application-domain>/<DOI>.md` pattern. The **v4 Flywheel auto-sink pipeline** (visible in the `09bec367` commit message "飞轮 v4 自动 sink") is the first observation of Robin's LDR pipeline v4 in action — the v3 SOP was 9 steps (per the 2026-08-25 `9aa2af4c` vendor-mapping retrofit); the v4 auto-sink iterates the SOP with an automated commit/sink step.
- **Wiki delta: automated maintenance only** (CLI metadata cycle + sources-sync + daily update + sources-sync). The 4 new wiki commits are routine: 2 daily updates + 2 sources-syncs (the standard cadence).
@@ -87,5 +121,10 @@ The 5 most recent vault commits are the new 2 (Tomas 2026 + Vijakumaran 2026) on
## Previous run
- 2026-09-11T18:14Z — vault HEAD bumped `391e4713` → `09bec367` (**vault silence streak BROKEN** after 11 calendar days), 2 new vault commits (`1fd63019` Tomas 2026 HGSC + `09bec367` Vijakumaran 2026 brain-organoid ALI oxygen engineering — first v4 Flywheel auto-sink entry), 4 new wiki commits (`299eeab` sources-sync 2026-09-10 twenty-seventh + `1e6a7cb` daily update 2026-09-10 + `2bf104e` daily update 2026-09-11 + `55d930f` sources-sync 2026-09-11 twenty-eighth), 10-dirty-file baseline, 4 carry-forward untracked directories bumped to 30/25/25/18-day, 1 new untracked `NO` file. See the "Synthesis-policy — this run (2026-09-11T18:14Z)" section above + the "Latest update — git-repo-1 (2026-09-11T18:14Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
- 2026-09-09T18:11Z — vault HEAD unchanged at `391e4713`, 2 new wiki commits (`f7450e9` + `7e2072c` — the **twenty-sixth** consecutive sources-sync), 10-dirty-file baseline, the 4 carry-forward untracked directories bumped to 29/24/24/17-day carry-forward. See [`/themes/05-robin-research.md`](/themes/05-robin-research.md) + `/quickstart.md` for the full synthesis of that run.
- 2026-09-10T18:19Z — manifest written by a prior ingestion cycle but no corresponding wiki update (the wiki HEAD was still `299eeab` at the 2026-09-10T18:19Z manifest timestamp, between the `7e2072c` 2026-09-09 sources-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp).
still `299eeab` at the 2026-09-10T18:19Z manifest timestamp, between the `7e2072c` 2026-09-09 sources-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp).
ces-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp).
still `299eeab` at the 2026-09-10T18:19Z manifest timestamp, between the `7e2072c` 2026-09-09 sources-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp).
6-09-09 sources-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp).
+14 -4
View File
@@ -2,8 +2,8 @@
type: "Reference"
title: "Hacker News — evidence index"
description: "Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items."
tags: [hackernews, evidence-index, source, 2026-09-12, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, 2026-08-21, 2026-08-20, 2026-08-19, 2026-08-18, 2026-08-17, 2026-08-16, 2026-08-15, 2026-08-13, 2026-08-12, 2026-08-10, cloud-in-a-bottle-8th-cluster-entry, gpt-6-astra-highest-engagement-streak, gpt-6-astra-openrouter-5th-cluster-entry, qwen-38-27b-cerebras-15th-cluster-entry, collusion-wiki-agent-message-board-adjacent, k2-horizon-openweight-14th-cluster-entry, m4-pro-mac-mini-local-model-13th-cluster-entry, muse-spark-closed-weight-adjacent, nvidia-acquire-hugging-face-2nd-item, gemini-38-flash-closed-weight-adjacent, anthropic-formalizing-fermat-closed-weight-adjacent, portal-spotify-claude-code-adjacent, codex-cli-libreoffice-adjacent, sixth-nbhits-positive-but-items-zero-materialization-gap, ask-hn-skills-files-259pt-named-stack-adjacent, lg-smart-tvs-audio-logging-972pt-off-scope, keep-our-servers-running-814pt-off-scope, de-brainrot-vacations-407pt-off-scope, grapheneos-default-apps-381pt-off-scope, anubis-wasm-338pt-off-scope, switzerland-microsoft-replacement-306pt-off-scope, mistral-raises-3b-eur-sovereign-openweight-adjacent, alphagenome-atlas-deepmind-247pt-closed-weight-adjacent, libreoffice-no-ai-features-590pt-named-stack-adjacent, jellyfin-12-556pt-off-scope, navier-stokes-openai-271pt-closed-weight-adjacent, google-jail-independent-wikis-439pt-openwiki-adjacent, qwen38-27b-quantization-benchmark-95pt-borderline, i-have-adhd-coding-skill-107pt-named-stack-adjacent, fifth-fully-zero-algolia-lane, thirtieth-hn-pull, deepseek-v41-flash-openweight-cluster-adjacent, qwen-38-reasoning-prefills-20pt-borderline, claude-change-add-to-cart-725pt-closed-weight-adjacent, gpt-6-astra-looped-transformers-162pt-closed-weight-adjacent, desert-ant-labs-294pt-local-llm-adjacent, thirty-first-hn-pull, deepseek-v41-flash-801pt-16th-cluster-adjacent, ai-vendor-business-stack-cluster-10-items, openai-training-toggle-8th-business-stack-entry, openai-proof-stolen-9th-business-stack-entry, openai-unpublished-math-10th-business-stack-entry, cognition-swe-2-coding-agent-adjacent, thirty-second-hn-pull, sixth-fully-zero-algolia-lane, openai-agents-api-11th-business-stack-entry, astra-for-coding-named-stack-adjacent, claude-age-assurance-closed-weight-adjacent, rtk-token-savings-named-stack-adjacent, gpty-agent-orchestration-adjacent, thirty-third-hn-pull, substring-noise-only-algolia-lane-4-of-6, openai-rubygems-attack-889pt-adjacent, dario-amodei-pace-frontier-anthropic-policy-adjacent, nvidia-central-bank-ai-economist-adjacent, ilands-ai-agent-spam-adjacent, seventeenth-fully-zero-deepagents-lane]
timestamp: 2026-09-12T18:00:33Z
tags: [hackernews, evidence-index, source, 2026-09-13, 2026-09-12, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, 2026-08-21, 2026-08-20, 2026-08-19, 2026-08-18, 2026-08-17, 2026-08-16, 2026-08-15, 2026-08-13, 2026-08-12, 2026-08-10, cloud-in-a-bottle-8th-cluster-entry, gpt-6-astra-highest-engagement-streak, gpt-6-astra-openrouter-5th-cluster-entry, qwen-38-27b-cerebras-15th-cluster-entry, collusion-wiki-agent-message-board-adjacent, k2-horizon-openweight-14th-cluster-entry, m4-pro-mac-mini-local-model-13th-cluster-entry, muse-spark-closed-weight-adjacent, nvidia-acquire-hugging-face-2nd-item, gemini-38-flash-closed-weight-adjacent, anthropic-formalizing-fermat-closed-weight-adjacent, portal-spotify-claude-code-adjacent, codex-cli-libreoffice-adjacent, sixth-nbhits-positive-but-items-zero-materialization-gap, ask-hn-skills-files-259pt-named-stack-adjacent, lg-smart-tvs-audio-logging-972pt-off-scope, keep-our-servers-running-814pt-off-scope, de-brainrot-vacations-407pt-off-scope, grapheneos-default-apps-381pt-off-scope, anubis-wasm-338pt-off-scope, switzerland-microsoft-replacement-306pt-off-scope, mistral-raises-3b-eur-sovereign-openweight-adjacent, alphagenome-atlas-deepmind-247pt-closed-weight-adjacent, libreoffice-no-ai-features-590pt-named-stack-adjacent, jellyfin-12-556pt-off-scope, navier-stokes-openai-271pt-closed-weight-adjacent, google-jail-independent-wikis-439pt-openwiki-adjacent, qwen38-27b-quantization-benchmark-95pt-borderline, i-have-adhd-coding-skill-107pt-named-stack-adjacent, fifth-fully-zero-algolia-lane, thirtieth-hn-pull, deepseek-v41-flash-openweight-cluster-adjacent, qwen-38-reasoning-prefills-20pt-borderline, claude-change-add-to-cart-725pt-closed-weight-adjacent, gpt-6-astra-looped-transformers-162pt-closed-weight-adjacent, desert-ant-labs-294pt-local-llm-adjacent, thirty-first-hn-pull, deepseek-v41-flash-801pt-16th-cluster-adjacent, ai-vendor-business-stack-cluster-10-items, openai-training-toggle-8th-business-stack-entry, openai-proof-stolen-9th-business-stack-entry, openai-unpublished-math-10th-business-stack-entry, cognition-swe-2-coding-agent-adjacent, thirty-second-hn-pull, sixth-fully-zero-algolia-lane, openai-agents-api-11th-business-stack-entry, astra-for-coding-named-stack-adjacent, claude-age-assurance-closed-weight-adjacent, rtk-token-savings-named-stack-adjacent, gpty-agent-orchestration-adjacent, thirty-third-hn-pull, substring-noise-only-algolia-lane-4-of-6, openai-rubygems-attack-889pt-adjacent, dario-amodei-pace-frontier-anthropic-policy-adjacent, nvidia-central-bank-ai-economist-adjacent, ilands-ai-agent-spam-adjacent, seventeenth-fully-zero-deepagents-lane, thirty-fourth-hn-pull, bengio-ai-agents-lying-cheating-coordinating-491pt-adjacent, everyone-should-slow-down-ai-development-699pt-adjacent, an-open-letter-to-dario-open-the-weights-295pt-adjacent, garry-tan-distillation-141pt-adjacent, real-swe-258pt-coding-agent-benchmark-adjacent, your-car-is-selling-your-data-82pt-cellink-substring-noise, eighteenth-fully-zero-deepagents-lane]
timestamp: 2026-09-13T18:00:36Z
---
# Hacker News — evidence index
@@ -16,8 +16,18 @@ Compact evidence trail for the Hacker News connector (`hackernews-1`, Robin-cura
- **Backend:** public HN feeds (`top`, `new`) + Algolia HN search queries
- **Auth:** none — public feeds
- **Window:** last 24 hours
- **Latest fetch:** `2026-09-12T18:00:33Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-09-11 18:00, 2026-09-10 18:00, 2026-09-09 18:00, 2026-09-08 18:00, 2026-09-07 18:00, 2026-09-06 18:00, 2026-09-05 18:00, 2026-09-04 18:00, 2026-09-03 18:00, 2026-09-02 18:00, 2026-09-01 18:00, 2026-08-31 18:00, 2026-08-30 18:00, 2026-08-29 18:00, 2026-08-28 18:00, 2026-08-27 18:00, 2026-08-26 18:00, 2026-08-25 18:00, 2026-08-24 18:00, 2026-08-23 18:00, 2026-08-22 18:00, 2026-08-21 18:00, 2026-08-20 18:00, 2026-08-19 18:00, 2026-08-18 18:00, 2026-08-17 18:00, 2026-08-16 18:00, 2026-08-15 18:00, 2026-08-13 18:00, 2026-08-12 18:00, 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below)
- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-09-12T18-00-02-619Z/hackernews-results.json` (current — **thirty-third pull since 2026-08-07; 1st `substring-noise-only Algolia lane on 4 of 6 + clean zero on 2 of 6` pull since the 2026-09-10 prior pull with similar shape** (substring-noise hits materialized in `queryResults[i].response.hits` for `organoid` + `3Brain` + `Cellink` with the connector-level `items` field populated normally; `CelVivo` + `openwiki` + `deepagents` returned clean zero on both `nbHits` and `hits` — same shape as the 2026-09-10 prior pull, distinct from the 2026-09-11 fully-zero pull + the 2026-09-09 nbHits-positive-but-items-zero materialization-gap pull); the **1st substring-noise-only-on-4-of-6 pull** of the 2026-08-07 streak (the prior substring-noise-only pulls had substring-noise on 3 of 6 rather than 4 of 6); the **23 unique top+best items** (top 18/30 + best 10/30 - 5 overlap: `49668386` google.com/goto + `49671329` Fuck it make it anyway + `49668706` Navier-Stokes + `49672510` We must pace the frontier + `49670032` Apple ANE reverse-engineering — the 23-item dedup count is -2 from the 2026-09-11 pull's 25 unique, the **lowest 23-item dedup count of the 2026-08-07 streak**; the 5 overlap count is +2 from the 2026-09-11 pull's 3); the **highest-engagement item of the pull** is **`49666735` "OpenAI agents carried out an undisclosed attack on RubyGems"** (889 pts best + 524 cmts — **3rd-highest single-item of the 2026-08-07 streak** after GPT-6 Astra 2080 + iPhone Duo 1350; rubyhack.ai / Ruby security incident; off-scope per scope); the **highest-engagement named-stack-adjacent AI-policy item of the pull** is **`49672510` "We must pace the frontier"** (206/209 pts top+best + 278/281 cmts, by `apsec112` 2026-09-12, https://darioamodei.com/post/we-must-pace-the-frontier — **Anthropic CEO Dario Amodei blog post on AI pacing**; **0.78 cmts-to-upvote ratio** indicates substantive AI-policy discussion; adjacent-not-promoted per scope because Anthropic is not on Robin's named stack + the entry is an AI-policy essay rather than a model release); the **highest-engagement AI-infrastructure-economics item of the pull** is **`49673098` "Nvidia is the central bank of AI"** (168 pts top+best + 143 cmts, by `tolugenius` 2026-09-12, https://www.economist.com/interactive/briefing/2026/09/03/nvidia-is-the-central-bank-of-ai — The Economist interactive briefing on Nvidia's role in AI; **0.85 cmts-to-upvote ratio** indicates substantive AI-infrastructure-economics discussion; adjacent-not-promoted per scope because the entry is an Economist feature rather than a vendor release); see 2026-09-12 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-09-11T18-00-02-196Z/hackernews-results.json` (prior — **thirty-second pull since 2026-08-07; 6th `fully-zero Algolia lane` pull** — same shape as the 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-09-04 + 2026-09-08 fully-zero pulls (all 6 Algolia queries returned `nbHits=null / hits=0` with no substring-noise false positives); `organoid` + `CelVivo` + `3Brain` + `Cellink` + `openwiki` + `deepagents` each returned clean `nbHits=null / hits=0` — **sixteenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal); the connector completed normally at `fetchedAt: 2026-09-11T18:00:33.613Z` (24-hour window); **25 unique top+best items** (top 21/30 + best 7/30 - 3 overlap: `49656225` Claude 18+ + `49649213` OpenAI Agents API + `49658299` Houthis key island — the 25-item dedup count is -4 from the 2026-09-10 pull's 29 unique, the **first 25-item dedup count of the 2026-08-07 streak**; the 3 overlap count is -1 from the 2026-09-10 pull's 4 overlap); the **highest-engagement item of the pull** is **`49657850` "Ask HN: Can we please limit the AI news flood?"** (679 pts best + 334 cmts — meta HN discussion on AI-news volume; off-scope per scope); the **highest-engagement named-stack-adjacent AI agent item of the pull** is **`49649213` "OpenAI Agents API"** (333 pts top+best + 169 cmts, by `aquir` 2026-09-10, https://developers.openai.com/api/docs/guides/agents-api/overview — **OpenAI's new Agents API platform launch**; **0.51 cmts-to-upvote ratio** indicates substantive engineering discussion; **adjacent-not-promoted per scope** because OpenAI is closed-weight and not on Robin's named stack — Hermes / MiniMax-M3+H3 / OpenWiki / RAGFlow / NocoDB / SeaFile / Codex CLI are the named agents; **11th entry candidate in the AI-vendor-business-stack cluster**); the **highest-engagement named-stack-adjacent AI-coding item of the pull** is **`49654229` "Astra for Coding: Why Are We Doing This Again?"** (406 pts best + 311 cmts, by `manojbajaj95` 2026-09-11, https://lucumr.pocoo.org/2026/9/7/astra-why/ — Armin Ronacher's blog post on Astra for Coding / a critical reflection on the proliferation of AI coding tools; **adjacent-not-promoted peLine truncated
- **Latest fetch:** `2026-09-13T18:00:36Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-09-12 18:00, 2026-09-11 18:00, 2026-09-10 18:00, 2026-09-09 18:00, 2026-09-08 18:00, 2026-09-07 18:00, 2026-09-06 18:00, 2026-09-05 18:00, 2026-09-04 18:00, 2026-09-03 18:00, 2026-09-02 18:00, 2026-09-01 18:00, 2026-08-31 18:00, 2026-08-30 18:00, 2026-08-29 18:00, 2026-08-28 18:00, 2026-08-27 18:00, 2026-08-26 18:00, 2026-08-25 18:00, 2026-08-24 18:00, 2026-08-23 18:00, 2026-08-22 18:00, 2026-08-21 18:00, 2026-08-20 18:00, 2026-08-19 18:00, 2026-08-18 18:00, 2026-08-17 18:00, 2026-08-16 18:00, 2026-08-15 18:00, 2026-08-13 18:00, 2026-08-12 18:00, 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below)
- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-09-13T18-00-02-773Z/hackernews-results.json` (current — **thirty-fourth pull since 2026-08-07; 2nd consecutive `substring-noise-only Algolia lane on 3 of 6 + clean zero on 3 of 6` pull** (same shape as the 2026-09-10 prior pull with substring-noise on `organoid` + `3Brain` + `Cellink` and clean zero on `CelVivo` + `openwiki` + `deepagents`; the 2026-09-12 prior pull was framed as "1st substring-noise-only-on-4-of-6" in its header but the actual data shows 3 of 6 substring-noise + 3 of 6 clean zero, matching this pull's shape); substring-noise hits materialized in `queryResults[i].response.hits` for `organoid` + `3Brain` + `Cellink` with the connector-level `items` field populated normally; `CelVivo` + `openwiki` + `deepagents` returned clean zero on both `nbHits` and `hits` — **eighteenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal; the **28 unique top+best items** (top 21/30 + best 12/30 - 5 overlap: `49678969` Why are AI agents lying / `49681545` Homebrew 7 / `49681152` JetKVM Mini / `49684393` Astra Fable alignment / `49679643` Aligned to whom — the 28-item dedup count is +5 from the 2026-09-12 pull's 23 unique, the **highest 28-item dedup count of the 2026-08-07 streak**; the 5 overlap count of 5 matches the 2026-09-12 pull's 5 overlap and the 2026-09-08 pull's 5 overlap, the **3rd 5-overlap dedup pull of the streak**); the **highest-engagement item of the pull** is **`49678683` "Everyone should slow down AI development except for me"** (699 pts top + 409 cmts, by `xena` 2026-09-12, https://xeiaso.net/notes/2026/everyone-slowdown-but-me/ — personal-blog essay on AI development pacing; **0.59 cmts-to-upvote ratio**; **adjacent-not-promoted per scope** because the entry is a personal-blog AI-policy essay rather than a vendor release / framework / schema / named-stack signal); the **highest-engagement named-stack-adjacent AI-safety item of the pull** is **`49678969` "Why are AI agents lying, cheating and coordinating?"** (491 pts top+best + 574 cmts, by `jonifico` 2026-09-12, https://yoshuabengio.org/en/publication/why-are-ai-agents-lying-cheating-and-coordinating — **Yoshua Bengio publication on AI agent behavior**; **1.17 cmts-to-upvote ratio** indicates substantive AI-safety debate; the **491+574=1,065 combined engagement is the 2nd-highest combined-engagement item of the pull** after the 699+409 `49678683` Everyone-slowdown-AI pacing essay; **adjacent-not-promoted per scope** because Yoshua Bengio publication is a research essay rather than a vendor release / framework / schema / named-stack signal; the same precedent as the 2026-09-12 Dario Amodei "We must pace the frontier" 206-pt AI-policy essay; **would-be 13th entry candidate in the AI-vendor-business-stack cluster** if promoted); the **highest-engagement open-weight-AI-policy item of the pull** is **`49676085` "An open letter to Dario: if you mean it, open the weights"** (295 pts top + 97 cmts, by `routelastresort` 2026-09-13, https://jacob.gold/posts/open-letter-to-dario-amodei-about-open-weights/ — direct follow-up to the 2026-09-12 `49672510` Dario Amodei "We must pace the frontier" + cross-walks to the 2026-09-13 `49685253` Garry Tan distillation ask; **0.33 cmts-to-upvote ratio**; **adjacent-not-promoted per scope** because the entry is a third-party blog post rather than a vendor release; **would-be 17th entry candidate in the open-weight-LLM cluster** if promoted, joining the 16 prior items in the cluster); see 2026-09-13 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-09-12T18-00-02-619Z/hackernews-results.json` (prior — **thirty-third pull since 2026-08-07; 1st `substring-noise-only Algolia lane on 4 of 6 + clean zero on 2 of 6` pull since the 2026-09-10 prior pull with similar shape** (substring-noise hits materialized in `queryResults[i].response.hits` for `organoid` + `3Brain` + `Cellink` with the connector-level `items` field populated normally; `CelVivo` + `openwiki` + `deepagents` returned clean zero on both `nbHits` and `hits` — same shape as the 2026-09-10 prior pull, distinct from the 2026-09-11 fully-zero pull + the 2026-09-09 nbHits-positive-but-items-zero materialization-gap pull); the **1st substring-noise-only-on-4-of-6 pull** of the 2026-08-07 streak (the prior substring-noise-only pulls had substring-noise on 3 of 6 rather than 4 of 6); the **23 unique top+best items** (top 18/30 + best 10/30 - 5 overlap: `49668386` google.com/goto + `49671329` Fuck it make it anyway + `49668706` Navier-Stokes + `49672510` We must pace the frontier + `49670032` Apple ANE reverse-engineering — the 23-item dedup count is -2 from the 2026-09-11 pull's 25 unique, the **lowest 23-item dedup count of the 2026-08-07 streak**; the 5 overlap count is +2 from the 2026-09-11 pull's 3); the **highest-engagement item of the pull** is **`49666735` "OpenAI Line truncated
## Latest update — 2026-09-13 18:00 UTC
- **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed had 30 IDs (**21 resolved** — +3 from the 2026-09-12 pull's 18, the **highest top-feed resolution since the 2026-09-11 pull's 21**, ending the 2-pull gap-and-recovery pattern that started with the 2026-09-12 pull's 18); `best` feed had 30 IDs (**12 resolved** — +2 from the 2026-09-12 pull's 10); deduplication gave **28 unique items across both feeds** (5 overlap between top and best: `49678969` Bengio AI agents lying/cheating/coordinating + `49679643` Aligned to whom + `49681152` JetKVM Mini + `49681545` Homebrew 7.0.0 + `49684393` Astra and Fable alignment evals — the **28-item dedup count is +5 from the 2026-09-12 pull's 23 unique, the highest 28-item dedup count of the 2026-08-07 streak**; the 5-overlap count matches the 2026-09-12 pull's 5 overlap and the 2026-09-08 pull's 5 overlap, the **3rd 5-overlap dedup pull of the streak**). The 6-query lane returned the **2nd consecutive `substring-noise-only Algolia lane on 3 of 6 + clean zero on 3 of 6` pull** (same shape as the 2026-09-10 prior pull with substring-noise on `organoid` + `3Brain` + `Cellink` and clean zero on `CelVivo` + `openwiki` + `deepagents`; the 2026-09-12 prior pull was framed in its header as "1st substring-noise-only-on-4-of-6" but the actual 2026-09-12 data showed 3 of 6 substring-noise + 3 of 6 clean zero, matching this pull's shape — so this pull is **2nd of the corrected sequence**, not 3rd); substring-noise hits materialized in `queryResults[i].response.hits` for `organoid` (nbHits=4) + `3Brain` (nbHits=3) + `Cellink` (nbHits=8) with the connector-level `items` field populated normally; `CelVivo` returned clean `nbHits=0 / hits=0` (clean zero); `openwiki` returned clean `nbHits=0 / hits=0` (clean zero); `deepagents` returned clean `nbHits=0 / hits=0` — **eighteenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal; the **`Cellink` substring-noise pool size of 8 is the largest of the 2026-08-07 streak** (vs the prior-largest `Cellink` pool of 10 on the 2026-09-01 pull's `helsinki`/`telling`/`selling` collisions). The connector completed normally at `fetchedAt: 2026-09-13T18:00:36.865Z` (24-hour window). This is the **34th pull since 2026-08-07** (after 33 prior pulls — 5 fully-zero + 6 substring-noise-only + 7 nbHits-positive-but-items-zero + 14 other [normal-noise-only / items-aggregated] — the 2026-09-13 pull is the 7th substring-noise-only pull, joining the 2026-09-12 + 2026-09-10 + 2026-09-09 + 2026-09-07 + 2026-09-06 + 2026-09-05 + 2026-09-02 + 2026-09-01 + 2026-08-27 + 2026-08-22 + 2026-08-12 + 2026-08-10 prior substring-noise-only pulls). Tavily (web-search) remains the productive lane for vendor news; the HN lane's stable role continues as "high-engagement inference-lane / agent-stack adjacents + occasional substring-noise false positives on the vendor queries" rather than vendor-direct signals.
- **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries — and zero substring-noise false positives on the biological sense of the queries.** `organoid` returned `nbHits=4 / hits=4` (4 substring-noise hits on the `organi-`/`organiz-`/`organis-` stem: `49683146` DietPi v10.7 release notes (Ask HN) 1 pt + `49682920` Ask HN: Career paths to consider if I am better at supporting than creating 25 pts + `49679224` Show HN: Open-Sourced Chrome Extension to Save, Organize and Switch Bookmarks 7 pts + `49678434` Leo: Organize Code and Ideas Your Way 3 pts — all off-scope `organiz-`/`organis-` substring collisions, **zero biological-organoid matches**); `3Brain` returned `nbHits=3 / hits=3` (3 substring-noise hits on `brain` substring: `49684517` Engineer turns simulated fly brain into a crypto day trader 2 pts (Tom's Hardware; the `brain` substring is incidental to the simulated fly brain framing) + `49682405` Andrey Vyshedskiy about the evolution of language and brain development [video] 1 pt + `49681606` How supermarkets are using AI to watch you in the aisles 4 pts (RTÉ `brainstorm` URL slug, **zero biological-organoid / neuroscience-in-vitro matches**) — **zero 3Brain HD-MEA matches**); `Cellink` returned `nbHits=8 / hits=8` (8 substring-noise hits on `celli-`/`yelling`/`calling`/`selling`/`telling` collisions: `49686666` Show HN: A mecha game where you and your friends pilot the SAME giant robot 1 pt (body text contains `yelling`) + `49686047` Show HN: 1Baton – a no-code tool for chaining API calls 2 pts (body text contains `calling`) + **`49683953` Your car is selling your data** 82 pts + 65 cmts (The Verge column, https://www.theverge.com/column/994172/your-car-is-selling-your-data; **the highest-engagement Cellink substring-noise pool item of the pull**, structural adjacency to the 2026-09-12 `49662990` "I spent $220 on Google app ads and 60% of the installs were robots" 710 pts ad-fraud entry via the consumer-data-sales framing; the **`selling` substring match is incidental to the connected-vehicle data privacy framing, NOT a Cellink BIO X bioprinter match**) + `49682946` Show HN: Analyst Index – analysts who make money telling you good stock calls 12 pts (body text contains `telling`) + `49680653` "Selling Out" 2 pts (Sean Goedecke blog; `selling` substring is incidental to the title) + 3 lower-engagement `celli-`/`calling` items — all off-scope `celli-`/`selling`/`telling`/`yelling`/`calling` substring collisions, **zero BIO X bioprinter matches**); `CelVivo` returned clean `nbHits=0 / hits=0` (clean zero, **2nd consecutive clean-zero `CelVivo` pull after the 2026-09-12 pull**). A title/URL regex sweep across the **28 unique top+best items** turned up **zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items**. The "no material HN footprint for the 4 vendor lines" finding continues to hold — this is the **34th pull since 2026-08-07**. The 28 unique top+best items include **zero matches** for any in-scope vendor / customer / application-domain keyword — no CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip / organoid / bioprinting hits; no Hermes / OpenClaw / MiniMax / RAGFlow / NocoDB / SeaFile / Codex-CLI direct release hits. The 28 unique top+best items include **no** `DeepSeek v4.1 Flash`-class open-weight LLM release + **no** `GPT-6 Astra`-class closed-weight LLM release + **no** `Cloud in a Bottle`-class self-hosting launch + **no** `Muse Spark`-class closed-weight agent release + **no** `Almanac (YC S26)`-class wikis-as-agent-memory-substrate pattern release.
- **Workflow lane:** **zero positive `openwiki` brand hits; zero positive `deepagents` hits; zero self-hosted-agentic-substrate cluster entries; zero open-weight-LLM cluster entries that promote the cluster; zero closed-weight-M3 cluster entries; zero AI-vendor-business-stack cluster entries.** `openwiki` returned clean `nbHits=0 / hits=0` — so the `openwiki-brand` watchlist row on `/themes.md` stays at Last seen 2026-07-16. `deepagents` returned clean `nbHits=0 / hits=0` — the **eighteenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal. The 28 unique top+best items include **the highest-engagement item of the pull** — **`49678683` "Everyone should slow down AI development except for me"** (699 pts best + 409 cmts, by `xena` 2026-09-12, https://xeiaso.net/notes/2026/everyone-slowdown-but-me/ — personal-blog essay on AI development pacing; **0.59 cmts-to-upvote ratio** indicates substantive AI-policy discussion; **off-scope per scope** because the entry is a personal-blog AI-policy essay rather than a vendor release / framework / schema / named-stack signal; the **699-pt engagement is the 2nd-highest single best-feed item of the entire 2026-08-07 streak** after the 2026-09-12 `49666735` OpenAI agents RubyGems attack 889 pts + 524 cmts + the 2026-09-04 GPT-6 Astra `49554643` 2080 pts top+best + the 2026-09-10 iPhone Duo `49630931` 1350 pts top+best + the 2026-08-27 Nvidia-Hugging Face acquisition `49458161` 1719 pts top+best; the **"everyone should slow down AI development except for me" framing** is structurally adjacent to the 2026-09-12 `49672510` "We must pace the frontier" 206-pt Anthropic Dario Amodei CEO-blog entry via the AI-development-pacing policy lane but does not promote the AI-vendor-business-stack cluster because (a) the entry is a personal-blog essay rather than a vendor privacy / IP / business-stack signal, (b) `xena` is the author and Anthropic is not on Robin's named stack — Hermes / MiniMax-M3+H3 / OpenWiki / RAGFlow / NocoDB / SeaFile / Codex CLI are the named agents; cross-walks to the 2026-09-13 `49685253` Garry Tan 141-pt "US open-weight AI labs to distill frontier models" + the 2026-09-13 `49676085` 295-pt "An open letter to Dario: if you mean it, open the weights" via the AI-policy-pacing narrative but does not promote any cluster because the entries are independent AI-policy commentary rather than coordinated cluster material). The 28 unique top+best items include **the highest-engagement named-stack-adjacent AI-safety item of the pull** — **`49678969` "Why are AI agents lying, cheating and coordinating?"** (491 pts top+best + 574 cmts, by `jonifico` 2026-09-12, https://yoshuabengio.org/en/publication/why-are-ai-agents-lying-cheating-and-coordinating — **Yoshua Bengio publication on AI agent behavior**; **1.17 cmts-to-upvote ratio** indicates substantive AI-safety debate (the highest ratio of any item on the pull); **adjacent-not-promoted per scope** because Yoshua Bengio publication is a research essay rather than a vendor release / framework / schema / named-stack signal; the **491+574=1,065 combined engagement is the 2nd-highest combined-engagement item of the pull** after the 699+409 `49678683` Everyone-slowdown-AI pacing essay; the same precedent as the 2026-09-12 `49672510` Dario Amodei "We must pace the frontier" 206-pt AI-policy essay; **would-be 13th entry candidate in the AI-vendor-business-stack cluster** if promoted, joining the 2026-09-05 `49568506` Anthropic FLT formalization (706 pts top+best + 447 cmts, 7th entry) + the 2026-09-10 `49643556` OpenAI training-toggle (383 pts best + 146 cmts, 8th entry) + the 2026-09-10 `49638353` OpenAI proof stolen (283 pts best + 10 cmts, 9th entry) + the 2026-09-10 `49639408` OpenAI unpublished math (210 pts top + 357 cmts, 10th entry) + the 2026-09-11 `49649213` OpenAI Agents API (333 pts top+best + 169 cmts, 11th entry candidate) + the 2026-09-12 `49672510` Dario Amodei essay (206 pts top+best + 278 cmts, 12th entry candidate); the AI-vendor-business-stack cluster stays at **~4,104+ pts across 10 items in 8 pulls over 11 days** + 3 adjacent-not-promoted 11th/12th/13th entry candidates spanning the 2026-09-11 + 2026-09-12 + 2026-09-13 pulls). The 28 unique top+best items include **the highest-engagement open-weight-AI-policy item of the pull** — **`49676085` "An open letter to Dario: if you mean it, open the weights"** (295 pts best + 97 cmts, by `routelastresort` 2026-09-13, https://jacob.gold/posts/open-letter-to-dario-amodei-about-open-weights/ — direct follow-up to the 2026-09-12 `49672510` Dario Amodei "We must pace the frontier" + cross-walks to the 2026-09-13 `49685253` Garry Tan distillation ask via the open-weight-policy lane; **0.33 cmts-to-upvote ratio**; **adjacent-not-promoted per scope** because the entry is a third-party blog post rather than a vendor release; **would-be 17th entry candidate in the open-wLine truncated
- **Synthesis result:** **No theme-row updates.** The 2026-09-13 pull surfaces no promotable signal that fits the recurring-row criteria: (a) **`49678683` Everyone should slow down AI development except for me** (699 pts) is a personal-blog AI-policy essay, not a vendor release / business-stack signal — adjacent-not-promoted per scope; (b) **`49678969` Bengio Why are AI agents lying, cheating and coordinating** (491 pts + 574 cmts, 1.17 cmts-to-upvote ratio) is a Yoshua Bengio publication on AI agent behavior, not a vendor release / business-stack signal — adjacent-not-promoted per scope, **13th entry candidate** in the AI-vendor-business-stack cluster; (c) **`49676085` An open letter to Dario: if you mean it, open the weights** (295 pts) is a third-party open-weight-AI-policy blog post, not a vendor release — adjacent-not-promoted per scope, **17th entry candidate** in the open-weight-LLM cluster; (d) **`49676820` Real-SWE: Benchmarking AI models on private, real-world, enterprise codebases** (258 pts) is a coding-agent benchmark, not a vendor release — adjacent-not-promoted per scope; (e) **`49685253` Garry Tan wants US open-weight AI labs to distill frontier models** (141 pts) is a Garry Tan TechCrunch open-weight-AI-policy feature, not a vendor release — adjacent-not-promoted per scope, **18th entry candidate** in the open-weight-LLM cluster; (f) **`49683953` Your car is selling your data** (82 pts Cellink substring-noise) is a The Verge connected-vehicle privacy column, not a vendor release — adjacent-not-promoted per scope, **2nd `Cellink` substring-noise-only item of the 2026-08-07 streak** (after the 2026-09-12 prior pull's substring-noise on `Cellink`). **No new themes emerge** from the pull. The `MiniMax-m3` row stays unchanged because the 2026-09-13 pull does not surface any MiniMax-M3 or MiniMax-H3 release; **Last seen stays at 2026-08-03**; Confidence stays at `source-backed`; Evidence count stays at 13. **No other theme-row updates** — `hermes-agent-v0-19-quicksilver` row stays unchanged (no new Hermes Agent release), `agent-memory-architecture` row stays unchanged (no new OKF/MCP Memory/Almanac artifact), `class-organoid-3d-bioprinting` row stays unchanged (no organoid/bioprinting signal on this pull), `openwiki-brand` row stays unchanged (clean zero on `openwiki` query — `openwiki-brand` watchlist row stays at Last seen 2026-07-16), `china-cde-cell-gene-therapy-rules-2026` row stays unchanged, `china-order-no-818-clinical-translation` row stays unchanged. The AI-vendor-business-stack cluster stays at **~4,104+ pts across 10 items in 8 pulls over 11 days** (the 2026-09-13 `49678969` Bengio essay is the 13th entry candidate; the 2026-09-12 `49672510` Dario Amodei essay is the 12th entry candidate; the 2026-09-11 `49649213` OpenAI Agents API 333 pts remains the latest 11th entry candidate; all 3 are adjacent-not-promoted per scope). The open-weight-LLM cluster stays at **~4,535+ pts across 15 items in 13 pulls over 16 days** (the 2026-09-13 `49685253` Garry Tan essay is the 18th entry candidate; the 2026-09-13 `49676085` "An open letter to Dario" essay is the 17th entry candidate; the 2026-09-10 `49639090` DeepSeek v4.1 Flash 801 pts remains the latest 16th entry candidate; all 3 are adjacent-not-promoted per scope). The closed-weight-M3-comparison-anchor cluster stays at **~3,837+ pts across 5 items in 5 pulls over 8 days**. The self-hosted-agentic-substrate cluster stays at **~1,351+ pts across 8 entries / 15 days**. The AI labs + math proof sub-cluster stays at ~1,582 pts over 5 days.
## Latest update — 2026-09-12 18:00 UTC
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- [Agents 代理商档案索引 — 跨 agent CRM 同步](agents.md) - Cross-agent index of the Obsidian vault 02-Clients/Agents/* profiles (which agents Robin is actively working with, mapped by vendor product line). Base identity only — sensitive fields (phone / WeChat / email / end-customer list / opportunity value) live only in the private vault. Updated 2026-08-07 with _known_associations.md product-line → agent → end-customer mapping.
- [全国经销商地图 (2026-08-07 时点)](distributors-china-2026.md) - Compact index of Robin's 2026-08-07 China distributor baseline (259 dealers across 7 regions, replacing 261 in the 2026-07-24 baseline) plus the new product-association index _known_associations.md. Surfaces CelVivo ClinoStar → 济南成全 + FemtoBiomed CellShot → 9X Bio → TriArm Therapeutics chain. Routes pricing-sensitive fields to the private Obsidian vault per /sources/agents.md privacy rule.
- [飞书邮箱 (Robin customer mailbox)](feishu-mail.md) - Planned cross-agent mailbox sync target for Robin's Feishu (飞书) mailbox (imap.feishu.cn:993 / imap.larksuite.com:993) — would let MiniMax code / Hermes recall 'what did Robin last discuss with customer X' from email metadata + summaries. Not yet provisioned — IMAP credentials + update script + crontab still pending Robin setup; this page documents the planned configuration and the sync policy that will be applied once provisioned.
- [Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff`, 2026-09-11, **vault HEAD bumped `391e4713` → `09bec367`** in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window, **vault silence streak BROKEN after 11 calendar days** — **2 new vault commits** since the 2026-08-31T18:09Z THIRD consecutive 5-paper CelVivo LDR cluster: `1fd63019` 2026-09-10 `feat(literature): Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read` adding `04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md` (Western University HGSC ovarian-cancer precision-medicine deep-read, **0 vendor callouts**, `?? 0` per vendor-mapping discipline, no 3Brain reference per SOP cleanup rule) + `09bec367` 2026-09-11 `literature: 精读 NocoDB Id=3029 Air-liquid interface-centered oxygen engineering in human br (飞轮 v4 自动 sink)` adding `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md` (brain-organoid ALI oxygen engineering — first paper routed through the v4 Flywheel auto-sink pipeline)); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 29 → **30-day carry-forward** (27 → **28 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 24 → **25-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + **2026-09-11** fetches), `deepread_40240593/` 17 → **18-day carry-forward** (mtime unchanged across **17 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `55d930ffbc0a658aa335683f0d412496b32af549`, 2026-09-11, **4 new automated wiki commits in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window: `299eeab` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `7e2072c` 2026-09-09 + `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15) committed `sources/{nocodb,ragflow,seafile,wikijs}.md`, then `1e6a7cb` chore: daily update 2026-09-10 (per `git show --stat 1e6a7cb` the commit touched 14 files including `.last-update.json` + `open-questions.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md`), then `2bf104e` chore: daily update 2026-09-11 (per `git show --stat 2bf104e` the commit touched 12 files including `.last-update.json` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + additional files), then `55d930f` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern); the very next synthesis edits from the HN-1 2026-09-11 + web-search-1 2026-09-11 (skipped) + this git-repo-1 2026-09-11T18:14Z run re-touched files leaving the dirty count at **10 per the manifest `changedFiles` list** — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` — **same shape as the 2026-09-10T18:19Z fetch (10-dirty-file baseline)** because the `55d930f` sources-sync on 2026-09-11 re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) that the prior daily updates had cleared via commit, plus the CLI metadata cycle re-touched `index.md` + `quiLine truncated
?: 0` — appears to be a stray test artifact, no synthesis relevance)**.**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
- [Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. **Latest fetch (2026-09-13T18:08Z — 31st git-repo-1 fetch since 2026-08-07): vault HEAD unchanged at `09bec367` for the 2nd consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption; wiki HEAD bumped `55d930f` → `5f33bd3` via 4 new automated wiki commits (`7cfb801` sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync + `999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 + `5f33bd3` sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync); 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800); 8-dirty-file baseline (down from 10-dirty at the 2026-09-11 fetch); carry-forward bump 30/25/25/18 → 32/27/27/20-day.** Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `09bec367`, 2026-09-11, vault silence streak BROKEN after 11 calendar days with 2 new commits — Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering, the first v4 Flywheel auto-sink pipeline entry); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `5f33bd3`, 2026-09-13, bumped from `55d930f` via 4 automated commits in the 48-hour window — `7cfb801` sources-sync twenty-ninth + `999a37d` daily update + `0447186` daily update + `5f33bd3` sources-sync thirtieth). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
- [Hacker News — evidence index](hackernews.md) - Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items.
- [文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件)](ldr-report-template.md) - Master template for Robin's literature-deep-read (LDR) pipeline — consolidates 4 literature skills (`literature-deep-read` / `research` / `review` / `curation-for-sales`) into a single 8-rule + 3-trigger + 5-section "真适合浏览" report format. Synthesized from 4-27 SOP范本 + 7-27 实战 lessons (Tasevska / Raji / Bosnjakovic). Triggers "精读吧" / "发 wikijs" / "入库" / "A" / Id/DOI/PMID/PDF signals into 4-step精简 or 8-step完整 flows. PDF全文必传 + PyMuPDF xref去重 + 9项强制 + SeaFile hostname `fb.biokingdom.top` + NocoDB v1 JSON + 3张真图 + `journal-year-topic` 报告路径.
- [Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)](literature-cel-bosnjakovic-2025-pah-deepread.md) - Deep-read synthesis of Bosnjakovic A et al. 2025 bioRxiv preprint (DOI 10.1101/2025.07.10.663939v1, 2025-07-10) — 21-day mature HepG2 3D spheroids with graded non-cytotoxic BaP + BBF (PAH代表物) exposure for metabolomics biomarker discovery. Robin's connection: 3D spheroid protocol maps directly onto CelVivo ClinoStar dynamic culture; supports PAH exposure metabolomics positioning for hepatotoxicity / NAFLD modeling applications. 精读 2026-07-27.
@@ -16,15 +16,15 @@
- [Sharma 2026 — vascularized retinal organoid RGC survival and maturation (Cell Stem Cell)](literature-sharma-2026-cell-stem-cell-vascularized-retinal-organoid-rgc-deepread.md) - Deep-read synthesis of Sharma K et al. (2026) Cell Stem Cell — transiently vascularized human retinal organoids with RGC 18.2% vs ctrl-RO 1.21% at week 18, W31 ON/OFF/ON-OFF light responses, C3 endothelial monolayer integration strategy.
- [3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)](literature-tasevska-2025-deepread.md) - Deep-read synthesis of Tasevska T et al. 2025 European Journal of Pharmaceutical Sciences 206:106998 (DOI 10.1016/j.ejps.2024.106998, 精读 2026-07-27) — first systematic SSE semi-solid extrusion vs DLP digital-light-processing comparison for sustained-release HCTZ (hydrochlorothiazide) tablets, with focus on SSE matching Cellink BIO X extrusion principle. Supports Robin's 3D-printed personalized-dose / sustained-release positioning and SSE extruder cross-sell narrative for Cellink BIO X accounts.
- [Literature Deep-Reads — cross-agent deep-read index](literature.md) - Cross-agent index of Robin's literature deep-reads across the 4 vendor product lines (CelVivo / 3Brain / Cellink / Femtobiomed) and adjacent application domains (organoid IRB / ethics, vascularized organoids, microfluidic / organ-on-chip, brain-organoid ALI oxygen engineering, HGSC ovarian cancer precision medicine). Backed by the Obsidian vault 04-Literature/Deep-Reads/ and the flywheel-sync pipeline; synthesis pages are linked per paper. The 2026-09-11 fetch added 2 new entries after the **vault silence streak was broken** at 2026-09-10 (Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering, the latter being the **first v4 Flywheel auto-sink pipeline entry**); the prior 2026-08-31 CelVivo cluster remains the most-recent vault activity for 11 calendar days before the 2026-09-10 / 2026-09-11 resumption.
- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md)
- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md) - Per-table record counts for Robin's 13 NocoDB literature tables (brain / intestinal / CelVivo / cardiac / cancer / liver / other-organoid / kidney / retinal / Cellink / organoid-old / lung / 3Brain) plus 2 company libraries, refreshed daily by `~/.local/bin/openwiki-update-sources.sh`. Cross-agent substrate for MiniMax code / Hermes to query 'what is in Robin's NocoDB'.
- [OpenWiki Upgrade Drift (auto-generated)](openwiki-version-drift.md)
- [OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)](OpenWiki%E9%80%9F%E6%9F%A5%E6%89%8B%E5%86%8C.md) - Compact OpenWiki cheat-sheet that condenses the 2026-07-27 6-conversation walkthrough into a single ready-to-share document. Designed for one-shot delivery to any agent / colleague / customer / manager who asks 'what is OpenWiki?' — covers the core concept, structure, sync model, and 4 active connectors in one page.
- [RAGFlow 文档采样索引](ragflow-documents.md) - Document-level sample index of Robin's RAGFlow instance (http://10.10.10.254:9980) — 18 KBs / 32709 total docs / 401 sample entries (last sync 2026-08-03). Captures the 30-doc-per-request server-side limit + offset bug that forces 12 large KBs to single-page samples. Lets MiniMax code / Hermes see 'what's in each KB' without SQL queries; complements `/sources/ragflow.md` (KB-level health + counts).
- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md)
- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md) - Endpoint availability + 14 KB inventory for Robin's RAGFlow instance at http://10.10.10.254:9980/. Cross-agent KB retrieval substrate for MiniMax code / Hermes; covers the 2026-07-17 desktop embedding / bge-reranker outage and the keyword-grep fallback path.
- [Sources](README.md) - Per-connector evidence indexes and ingestion coverage for the local knowledge wiki; durable synthesis lives on canonical pages.
- [RustDesk 自建 hbbs 完整配置笔记 (2026-08-05)](rustdesk-sop.md) - End-to-end deployment note for Robin's self-hosted RustDesk relay server (hbbs + hbbr) — Unraid NAS container (10.10.10.254) + OpenWrt reverse-proxy (10.10.10.252) + Tencent Light Cloud (43.160.207.177) + ITX client (192.168.31.14), with permanent password + key config. Supports remote control of the ITX 24h host (per `/commitments.md` `itx-24h-host-build-2026-q3`) and Robin's travel-laptop remote-access workflow.
- [CelVivo 销售弹药清单 (2026-07-16 实战索引)](sales-ammunition.md) - Sales ammunition index for CelVivo ClinoStar / ClinoReactor — price-book SKUs (ClinoReactor 12-pack, ClinoStar, SP5D-24W, Demo kit), 8-protocol SOP series (ClinoReactor prep / media change / organoid gardening / speed-tuning / alginate / VitroGel), and 5 organ-specific application cases (HepG2, FTC-133, SCLC, TNBC, ClinoStar vs Orbital Shaker). Sources from RAGFlow CelVivo KB + CelVivo commercial KB; manually curated from Robin + Hermes 实战 lessons. Used by any agent answering CelVivo ClinoReactor pricing / demo / customer-pitch queries.
- [SeaFile 大文件存储索引](seafile.md)
- [SeaFile 大文件存储索引](seafile.md) - API + library inventory for Robin's SeaFile instance at http://10.10.10.254:9898/ (Token-authenticated, port 9898 internal, public share-link via https://fb.biokingdom.top). Cross-agent file storage substrate for LDR uploads, Wiki.js image embeds, and OpenWiki source-link references.
- [CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照)](vault-mtime-snapshot-2026-07-16.md) - Historical mtime snapshot of Robin's Obsidian vault from 2026-07-16 — captures CelVivo deep-read activity (0 new entries in the 7-day window 2026-07-09 → 2026-07-16; last activity 2026-07-05), 6 entries in the 30-day window, and ClinoReactor keyword hits. Provides a baseline reference for cross-agent vault state because WSL laptop vault is not directly readable from container agents. Pre-dates the 2026-08-07 distributor refresh + 2026-08-12 Liang 2026 / 2026-08-13 Review/ subfolder activity — superseded by `/themes/05-robin-research.md` for current vault state.
- [Web Search Evidence](web-search.md) - Compact ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news.
- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md)
- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md) - GraphQL endpoint + 83-sample page inventory for Robin's Biokingdom Wiki.js instance at http://10.10.10.254:3000/graphql (≥ 1773 max page id; server-side cap ~50 per query). Cross-agent document publishing substrate — Robin + the LDR skill auto-publish to /organoid, /products, /literature, /articles, /3brain, /instruments paths.
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---
type: "Reference"
title: "NocoDB 文献库索引 — 跨 agent 数据层"
description: "Per-table record counts for Robin's 13 NocoDB literature tables (brain / intestinal / CelVivo / cardiac / cancer / liver / other-organoid / kidney / retinal / Cellink / organoid-old / lung / 3Brain) plus 2 company libraries, refreshed daily by `~/.local/bin/openwiki-update-sources.sh`. Cross-agent substrate for MiniMax code / Hermes to query 'what is in Robin's NocoDB'."
tags: [sources, nocodb, cross-agent-substrate, literature-tables, 2026-09-12]
timestamp: 2026-09-12T18:30:02Z
---
# NocoDB 文献库索引 — 跨 agent 数据层
> 数据源: NocoDB 13 个文献库 + 2 个公司库 (实时,每次 OpenWiki cron 跑时更新)
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---
type: Reference
title: OpenWiki Upgrade Drift (auto-generated)
last_checked: 2026-09-05T20:00:02Z
last_checked: 2026-09-12T20:00:02Z
---
# OpenWiki Upgrade Drift
- Local installed: `v0.3.1`
- npm latest: `v0.5.0`
- Last checked: 2026-09-05T20:00:02Z
- npm latest: `v0.5.1`
- Last checked: 2026-09-12T20:00:02Z
## Action (manual, no auto-upgrade)
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---
type: "Reference"
title: "RAGFlow 全文检索索引 (Robin KB system)"
description: "Endpoint availability + 14 KB inventory for Robin's RAGFlow instance at http://10.10.10.254:9980/. Cross-agent KB retrieval substrate for MiniMax code / Hermes; covers the 2026-07-17 desktop embedding / bge-reranker outage and the keyword-grep fallback path."
tags: [sources, ragflow, kb-retrieval, cross-agent-substrate, endpoint-status, 2026-09-12]
timestamp: 2026-09-12T18:30:03Z
---
# RAGFlow 全文检索索引 (Robin KB system)
> 数据源: RAGFlow (http://10.10.10.254:9980/) 14 个 KB 全文检索结果
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---
type: "Reference"
title: "SeaFile 大文件存储索引"
description: "API + library inventory for Robin's SeaFile instance at http://10.10.10.254:9898/ (Token-authenticated, port 9898 internal, public share-link via https://fb.biokingdom.top). Cross-agent file storage substrate for LDR uploads, Wiki.js image embeds, and OpenWiki source-link references."
tags: [sources, seafile, file-storage, cross-agent-substrate, ldr-integration, 2026-09-12]
timestamp: 2026-09-12T18:30:02Z
---
# SeaFile 大文件存储索引
> 数据源: SeaFile (http://10.10.10.254:9898/) 共 N 个资料库
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type: "Reference"
title: "Web Search Evidence"
description: "Compact ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news."
tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-09-12, 2026-09-11, 2026-09-10, 2026-09-09, thirtieth-websearch-skip]
timestamp: 2026-09-12T18:14:00Z
tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-09-13, 2026-09-12, 2026-09-11, 2026-09-10, 2026-09-09, thirty-first-websearch-skip, thirtieth-websearch-skip]
timestamp: 2026-09-13T18:14:00Z
---
# Web Search Evidence
> Connector: `web-search-1` (Tavily). Search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC. Cumulative skip count: **30 consecutive** across 2026-08-08 → 2026-09-12.
> Connector: `web-search-1` (Tavily). Search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC. Cumulative skip count: **31 consecutive** across 2026-08-08 → 2026-09-13.
## 2026-09-13 attempted update — skipped
- **Status:** skipped. The runtime reported that `web-search-1` was not enabled (`Set enabled=true in ~/.openwiki/connectors/web-search/config.json`).
- **Authentication:** `TAVILY_API_KEY` was not present, so no Tavily request was made.
- **Coverage:** no raw data files were written for the requested 24-hour window. The nightly searxng-fallback slot for the 24-hour window is also empty on disk (no fallback result) — no web-search evidence of any kind landed in the window. No new source-backed evidence about CelVivo, 3Brain, Cellink, or organoid news was available.
- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md`.
- **Operational note:** the connector's on-disk configuration and runtime registration remain inconsistent. Configure `TAVILY_API_KEY` in the OpenWiki runtime and refresh the connector registry before the next pull. This is the **thirty-first consecutive skip** on the same code path (after 2026-08-08 + 2026-08-10 + 2026-08-12 + 2026-08-15 + 2026-08-17 + 2026-08-18 + 2026-08-19 + 2026-08-20 + 2026-08-21 + 2026-08-22 + 2026-08-23 + 2026-08-24 + 2026-08-25 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + 2026-09-11 + 2026-09-12); the latest successful Tavily pull remains 2026-08-03 18:08 UTC.
## 2026-09-12 attempted update — skipped
@@ -16,7 +24,7 @@ timestamp: 2026-09-12T18:14:00Z
- **Authentication:** `TAVILY_API_KEY` was not present, so no Tavily request was made.
- **Coverage:** no raw data files were written for the requested 24-hour window. The nightly searxng-fallback slot for the 24-hour window is also empty on disk (no fallback result) — no web-search evidence of any kind landed in the window. No new source-backed evidence about CelVivo, 3Brain, Cellink, or organoid news was available.
- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md`.
- **Operational note:** the connector's on-disk configuration and runtime registration remain inconsistent. Configure `TAVILY_API_KEY` in the OpenWiki runtime and refresh the connector registry before the next pull. This is the **thirtieth consecutive skip** on the same code path (after 2026-08-08 + 2026-08-10 + 2026-08-12 + 2026-08-15 + 2026-08-17 + 2026-08-18 + 2026-08-19 + 2026-08-20 + 2026-08-21 + 2026-08-22 + 2026-08-23 + 2026-08-24 + 2026-08-25 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + 2026-09-11); the latest successful Tavily pull remains 2026-08-03 18:08 UTC.
- **Operational note:** the connector's on-disk configuration and runtime registration remain inconsistent. Configure `TAVILY_API_KEY` in the OpenWiki runtime and refresh the connector registry before the next pull. This is the **thirtieth consecutive skip** on the same code path (after 2026-08-08 + 2026-08-10 + 2026-08-12 + 2026-08-15 + 2026-08-17 + 2026-08-18 + 2026-08-19 + 2026-08-20 + 2026-08-21 + 2026-08-22 + 2026-08-23 + 2026-08-24 + 2026-08-25 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + 2026-09-11); the latest successful Tavily pull remains 2026-08-03 18:08 UTC. The 2026-09-13 follow-up attempt landed as the **thirty-first consecutive skip**; recast the 2026-09-12 attempt as the **thirtieth** at the time of its attempt (thirty-first including the 2026-09-13 follow-up).
## 2026-09-11 attempted update — skipped
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---
type: "Reference"
title: "Wiki.js 索引 — 跨 agent 文档发布层"
description: "GraphQL endpoint + 83-sample page inventory for Robin's Biokingdom Wiki.js instance at http://10.10.10.254:3000/graphql (≥ 1773 max page id; server-side cap ~50 per query). Cross-agent document publishing substrate — Robin + the LDR skill auto-publish to /organoid, /products, /literature, /articles, /3brain, /instruments paths."
tags: [sources, wikijs, graphql, cross-agent-substrate, ldr-publishing, 2026-09-12]
timestamp: 2026-09-12T18:30:02Z
---
# Wiki.js 索引 — 跨 agent 文档发布层
> 数据源: Wiki.js (http://10.10.10.254:3000/graphql) Biokingdom 实例
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---
type: "Reference"
title: "Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)"
description: "Synthesis page for Robin's personal research portfolio — Obsidian vault + literature deep-read pipeline + sales ammunition + China distributor map + active CRM profiles + work-rhythm snapshots. Output routes into vendor themes 01 (organoid-equipment) and 02 (bioprinting). The 2026-08-23/24 fetch surfaced the largest single-day LDR burst since 2026-07-29 — 5 papers committed to main + new `deepread_40240593/` pipeline workspace directory. The 2026-08-26 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 fetches observed vault HEAD unchanged at `9d4767c7` (vault silent for the 1st + 2nd + 3rd + 4th + 5th consecutive fetches since the 2026-08-24/25 SECOND 5-paper LDR burst, 5 calendar days stale). The 2026-08-31 fetch observed vault HEAD bumped `9d4767c7` → `391e4713` — **THIRD consecutive single-day 5-paper LDR burst** (Stewart + Aiello + Nguyen + Miao + Yan, all CelVivo-anchored, all in the NEW `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V subfolder — Robin's first parallel-naming deep-read subfolder convention), ending the 5-day vault silence; combined with the 2026-08-23/24 + 2026-08-24/25 clusters, **15 LDR files in 8 calendar days = the largest sustained 8-day research output** in Robin's vault activity log. The 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 fetches observed vault HEAD unchanged at `391e4713` (vault silent for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th consecutive fetches since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR burst, **9 calendar days stale**). The 2026-09-11 fetch observed vault HEAD bumped `391e4713` → **`09bec367`** — **vault silence streak BROKEN after 11 calendar days** with **2 new vault commits**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); the pipeline has resumed after the 11-day pause. The 4 carry-forward untracked directories (Review + templates + celvivo_commercial + deepread_40240593) bump their carry-forward counts to **30/25/25/18 days** at the 2026-09-11T18:14Z fetch — the `Review/` + `templates/` + `celvivo_commercial/` entries remain **confirmed one-off** (carrying forward unchanged since the 2026-08-28 fetch) and continue as stale / not recurring carry-forward notes; the `deepread_40240593/` working-folder pipeline hypothesis continues to weaken (mtime unchanged across 17 consecutive silent fetches since the 2026-08-24/25 burst)."
tags: [theme, research, vault, deep-read, sales, crm, life-sciences, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, 2026-08-21, 2026-08-20, 2026-08-19, 2026-08-18, 2026-08-17, 2026-08-15, 2026-08-13, celvivo-app-note-2026, aiello-bagni-rc-cfd, tian-epicardium-mtor, kim-egain-3d-mea, ajongbolo-brain-organoid-review, tevonian-2026-vascularized-liver-mps, yang-2026-cardiac-organoid-review, shen-2026-vascularized-organoids-review, zhai-2026-3d-skin-pemphigus, yan-2024-tmem106b-sars-cov2-brain-organoid, stewart-2023-ba5-xbb-neurotropic-brain-organoid, nguyen-2024-jev-g4-australia-brain-organoid, aiello-2025-brain-organoid-reproducibility, miao-2025-vascularized-lung-gut-organoids, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, brain-organoid-virology-cluster, celvivo-clinoreactor-cluster, vascularized-organoids, cardiac-organoids, skin-organoids, hgsc-ovarian-cancer-precision-medicine, celvivo-capital-v-parallel-subfolder, vault-silence-4d, vault-silence-5d, vault-silence-6d, vault-silence-7d, vault-silence-8d, vault-silence-9d, vault-silence-broken, vault-resumed-after-11d, flywheel-v4-auto-sink, third-5paper-cluster, twenty-first-sources-sync, twenty-second-sources-sync, twenty-third-sources-sync, twenty-fourth-sources-sync, twenty-fifth-sources-sync, twenty-sixth-sources-sync, twenty-seventh-sources-sync, twenty-eighth-sources-sync, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-twelve-silent-fetches, deepread-40240593-thirteen-silent-fetches, deepread-40240593-fourteen-silent-fetches, deepread-40240593-fifteen-silent-fetches, deepread-40240593-sixteen-silent-fetches, deepread-40240593-seventeen-silent-fetches, deepread-40240593-eighteen-silent-fetches]
timestamp: 2026-09-11T18:14:00Z
description: "Synthesis page for Robin's personal research portfolio — Obsidian vault + literature deep-read pipeline + sales ammunition + China distributor map + active CRM profiles + work-rhythm snapshots. Output routes into vendor themes 01 (organoid-equipment) and 02 (bioprinting). The 2026-08-23/24 fetch surfaced the largest single-day LDR burst since 2026-07-29 — 5 papers committed to main + new `deepread_40240593/` pipeline workspace directory. The 2026-08-26 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 fetches observed vault HEAD unchanged at `9d4767c7` (vault silent for the 1st + 2nd + 3rd + 4th + 5th consecutive fetches since the 2026-08-24/25 SECOND 5-paper LDR burst, 5 calendar days stale). The 2026-08-31 fetch observed vault HEAD bumped `9d4767c7` → `391e4713` — **THIRD consecutive single-day 5-paper LDR burst** (Stewart + Aiello + Nguyen + Miao + Yan, all CelVivo-anchored, all in the NEW `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V subfolder — Robin's first parallel-naming deep-read subfolder convention), ending the 5-day vault silence; combined with the 2026-08-23/24 + 2026-08-24/25 clusters, **15 LDR files in 8 calendar days = the largest sustained 8-day research output** in Robin's vault activity log. The 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 fetches observed vault HEAD unchanged at `391e4713` (vault silent for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th consecutive fetches since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR burst, **9 calendar days stale**). The 2026-09-11 fetch observed vault HEAD bumped `391e4713` → **`09bec367`** — **vault silence streak BROKEN after 11 calendar days** with **2 new vault commits**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); the pipeline has resumed after the 11-day pause. The 4 carry-forward untracked directories (Review + templates + celvivo_commercial + deepread_40240593) bump their carry-forward counts to **30/25/25/18 days** at the 2026-09-11T18:14Z fetch — the `Review/` + `templates/` + `celvivo_commercial/` entries remain **confirmed one-off** (carrying forward unchanged since the 2026-08-28 fetch) and continue as stale / not recurring carry-forward notes; the `deepread_40240593/` working-folder pipeline hypothesis continues to weaken (mtime unchanged across 17 consecutive silent fetches since the 2026-08-24/25 burst). The **2026-09-13T18:08Z fetch** is the **31st git-repo-1 fetch of the 2026-08-07 streak** + the **2nd consecutive vault-silent fetch** after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at `09bec367`); **1 working-tree modification** was observed at `04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800) — Robin actively editing the MOC index file but NOT yet committed; the 4 carry-forward untracked directories bump to **32/27/27/20 days** at the 2026-09-13T18:08Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 4 new automated wiki commits in the 48-hour window (`7cfb801` sources-sync 2026-09-12 twenty-ninth + `999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 + `5f33bd3` sources-sync 2026-09-13 thirtieth) bumped wiki HEAD `55d930f` → `5f33bd3`; the 8-dirty-file baseline (down from the prior 10-dirty-file baseline) shows the daily-update cycle cleared `index.md` + `quickstart.md` + `sources/git-repo.md` + `themes.md` while `sources/openwiki-version-drift.md` was newly re-touched; synthesis-layer impact is **none** because vault produced no new external evidence."
tags: [theme, research, vault, deep-read, sales, crm, life-sciences, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, 2026-08-21, 2026-08-20, 2026-08-19, 2026-08-18, 2026-08-17, 2026-08-15, 2026-08-13, celvivo-app-note-2026, aiello-bagni-rc-cfd, tian-epicardium-mtor, kim-egain-3d-mea, ajongbolo-brain-organoid-review, tevonian-2026-vascularized-liver-mps, yang-2026-cardiac-organoid-review, shen-2026-vascularized-organoids-review, zhai-2026-3d-skin-pemphigus, yan-2024-tmem106b-sars-cov2-brain-organoid, stewart-2023-ba5-xbb-neurotropic-brain-organoid, nguyen-2024-jev-g4-australia-brain-organoid, aiello-2025-brain-organoid-reproducibility, miao-2025-vascularized-lung-gut-organoids, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, brain-organoid-virology-cluster, celvivo-clinoreactor-cluster, vascularized-organoids, cardiac-organoids, skin-organoids, hgsc-ovarian-cancer-precision-medicine, celvivo-capital-v-parallel-subfolder, vault-silence-4d, vault-silence-5d, vault-silence-6d, vault-silence-7d, vault-silence-8d, vault-silence-9d, vault-silence-broken, vault-resumed-after-11d, flywheel-v4-auto-sink, third-5paper-cluster, twenty-first-sources-sync, twenty-second-sources-sync, twenty-third-sources-sync, twenty-fourth-sources-sync, twenty-fifth-sources-sync, twenty-sixth-sources-sync, twenty-seventh-sources-sync, twenty-eighth-sources-sync, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-twelve-silent-fetches, deepread-40240593-thirteen-silent-fetches, deepread-40240593-fourteen-silent-fetches, deepread-40240593-fifteen-silent-fetches, deepread-40240593-sixteen-silent-fetches, deepread-40240593-seventeen-silent-fetches, deepread-40240593-eighteen-silent-fetches, deepread-40240593-nineteen-silent-fetches, moc-organoid-3d-culture-uncommitted-edit, vault-working-tree-moc-modification-2026-09-13, thirty-first-git-repo-fetch]
timestamp: 2026-09-13T18:08:00Z
---
# Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)
@@ -51,17 +51,17 @@ The diagram shows Robin's research substrate: a single Obsidian vault with 8 buc
## Knowledge substrate: Obsidian vault
Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-09-11T18:14:00Z):
Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-09-13T18:08:00Z — 31st git-repo-1 fetch of the 2026-08-07 streak; the 2026-09-11T18:14Z fetch was the 29th fetch; the 2026-09-12T18:08Z fetch was the 30th fetch with vault HEAD unchanged at `09bec367` + wiki HEAD bumped `55d930f` → `7d...` between the 2 daily updates):
| Field | Value |
| --- | --- |
| Repo path | `/home/ldw/workspace` |
| Branch | `main` |
| HEAD | `09bec36702cdbd8ef1d2644919ca337248ae6bff` (vault HEAD bumped `391e4713` → `09bec367` at the 2026-09-11T18:14Z fetch — **vault silence streak BROKEN after 11 calendar days** with **2 new vault commits**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid ALI oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); the 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 fetches observed vault HEAD unchanged at `391e4713` for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th consecutive fetches since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster, **9 calendar days of vault silence** at the 2026-09-09 fetch; the 2026-09-10 + 2026-09-11 fetches observed the vault-silence streak broken with 2 new vault commits; the 2026-08-31 CelVivo cluster remains the prior-most-recent committed vault activity but is no longer the latest) |
| HEAD | `09bec36702cdbd8ef1d2644919ca337248ae6bff` (vault HEAD bumped `391e4713` → `09bec367` at the 2026-09-11T18:14Z fetch — **vault silence streak BROKEN after 11 calendar days** with **2 new vault commits**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid ALI oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); the 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 fetches observed vault HEAD unchanged at `391e4713` for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th consecutive fetches since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster, **9 calendar days of vault silence** at the 2026-09-09 fetch; the 2026-09-10 + 2026-09-11 fetches observed the vault-silence streak broken with 2 new vault commits; the 2026-09-12 + 2026-09-13 fetches observed vault HEAD unchanged at `09bec367` (2nd + 3rd consecutive vault-silent fetches after the resumption — the 2026-09-13T18:08Z fetch is the 2nd consecutive vault-silent fetch); the 2026-08-31 CelVivo cluster remains the prior-most-recent committed vault activity but is no longer the latest) |
| Ahead of origin/main | 37 commits new since 2026-08-03 fetch (+2 from 2026-09-09T18:11Z fetch — `1fd63019` Tomas 2026 + `09bec367` Vijakumaran 2026) |
| Auth | local path only — no remote, no credentials |
| Working-tree state | dirty (28 untracked files + 4 untracked directories — `celvivo_commercial/1331651_20260630_131201.pdf` + `templates/类器官IRB申请清单.md` + `deepread_40240593/` (7 subdirs, **18-day carry-forward** at 2026-09-11, was 17-day at 2026-09-09, **17 consecutive silent fetches** since the 2026-08-24/25 burst — working-folder pipeline hypothesis continuing to weaken; the 2026-08-31 burst did NOT route through `deepread_<slug>/` working folders, the 2026-09-10 + 2026-09-11 resumption did NOT route through them either, the directory mtime is still 2026-08-24 16:31 +0800 — **18 fetches silent on directory mtime**) + `Review/zhou2023_computer_vision_microfluidics.md` (**30-day carry-forward** at the 2026-09-11T18:14Z fetch, **28 fetches silent**, **one-off interpretation confirmed at 2026-08-28 fetch** per the 2026-08-27 fetch confirmation, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + **2026-09-11** fetches; the `celvivo_commercial/` + `templates/` entries are also **confirmed one-off alongside the `Review/` entry** at the 2026-08-28 fetch, both at **25-day carry-forward** + **25 fetches silent** at the 2026-09-11 fetch; all 3 entries remain **stale / not recurring carry-forward notes**)) |
| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-09-11T18-14-12-972Z/manifest.json` |
| Working-tree state | dirty (28 untracked files + 4 untracked directories — `celvivo_commercial/1331651_20260630_131201.pdf` + `templates/类器官IRB申请清单.md` + `deepread_40240593/` (7 subdirs, **20-day carry-forward** at 2026-09-13, was 18-day at 2026-09-11, **19 consecutive silent fetches** since the 2026-08-24/25 burst — working-folder pipeline hypothesis continuing to weaken; the 2026-08-31 burst did NOT route through `deepread_<slug>/` working folders, the 2026-09-10 + 2026-09-11 resumption did NOT route through them either, the 2026-09-13 MOC-folder edit did NOT route through them either, the directory mtime is still 2026-08-24 16:31 +0800 — **19 fetches silent on directory mtime**) + `Review/zhou2023_computer_vision_microfluidics.md` (**32-day carry-forward** at the 2026-09-13T18:08Z fetch, **30 fetches silent**, **one-off interpretation confirmed at 2026-08-28 fetch** per the 2026-08-27 fetch confirmation, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + 2026-09-11 + 2026-09-12 + **2026-09-13** fetches; the `celvivo_commercial/` + `templates/` entries are also **confirmed one-off alongside the `Review/` entry** at the 2026-08-28 fetch, both at **27-day carry-forward** + **27 fetches silent** at the 2026-09-13 fetch; all 3 entries remain **stale / not recurring carry-forward notes**)) + 1 working-tree modification: `M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"` (mtime 2026-09-13 11:55:42 +0800 — Robin actively editing the MOC index file but not yet committed; first vault working-tree modification since the 2026-08-24/25 burst; the 2026-09-13 MOC-folder edit is the first new edit-route observed since the 2026-08-24/25 `deepread_<slug>/` working-folder pipeline was abandoned at the 2026-08-31 cluster) |
| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-09-13T18-08-XX-XXXZ/manifest.json` (2026-09-13T18:08:XX Z; prior fetch was `2026-09-11T18-14-12-972Z`) |
| **Latest cluster (2026-09-10 / 2026-09-11, vault silence streak BROKEN)** | **2 new vault commits after the 11-day vault silence** — `1fd63019` 2026-09-10 `feat(literature): Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read` (Western University; new file at `04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md`; **0 vendor callouts** — spheroid = ULA static plate, organoid = Cultrex BME, no bioreactor/spinner; **honest negative** for clinical-trial sequencing of PARPi-before-chemo in HRD patients) → `09bec367` 2026-09-11 `literature: 精读 NocoDB Id=3029 Air-liquid interface-centered oxygen engineering in human br (飞轮 v4 自动 sink)` (new file at `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md`; brain-organoid air-liquid interface oxygen engineering; **first paper routed through the v4 Flywheel auto-sink pipeline** — the v3 SOP was 9 steps per the 2026-08-25 `9aa2af4c` vendor-mapping retrofit, and the v4 auto-sink iterates the SOP with an automated commit/sink step). Both new papers route through the standard `04-Literature/Deep-Reads/<application-domain>/<DOI>.md` pattern but with **2 distinct path conventions**: Tomas 2026 uses the standard `04-Literature/Deep-Reads/` prefix (root-level pattern as in the 2026-08-23/24 cluster) while Vijakumaran 2026 uses the lowercase `Literature/Deep-Reads/Organoid/` prefix (consistent with the older 2026-08-16 Quintard 2024 + Guo 2026 entries). The 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster (Stewart + Aiello + Nguyen + Miao + Yan) is now the **prior-most-recent committed vault activity**; the 2026-09-10 + 2026-09-11 resumption is the **latest** |
| **Prior latest cluster (2026-08-31, demoted to prior-most-recent at the 2026-09-11 fetch)** | **THIRD consecutive single-day 5-paper LDR burst** (`eb24ab72` Stewart 2023 Front Microbiol SARS-CoV-2 omicron BA.5/XBB neurotropic brain organoids → `030f31ed` Aiello 2025 EMBO reports reproducible brain organoids (CelVivo ApS co-author affiliation) → `fad7e21e` Nguyen 2024 npj Viruses JEV G4 2022 Australia brain organoids → `4fca0123` Miao 2025 Cell vascularized lung/gut organoids → `391e4713` Yan 2024 Cell Reports TMEM106B SARS-CoV-2 ACE2-independent brain organoids) — **all 5 files landed in the NEW `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` subfolder (capital-V, parallel to the existing lowercase `04-Literature/Deep-Reads/Celvivo/` 142-file subfolder)**; Robin's **first parallel-naming deep-read subfolder convention**; subfolder semantics: QIMR Berghofer Suhrbier/Rawle viral-neurotropism brain-organoid line (Stewart + Nguyen + Yan) + CelVivo ApS co-authored reproducibility (Aiello) + vascularized lung/gut (Miao); 4 of 5 are brain organoids + 1 is vascularized lung/gut (Miao companion to the 2026-08-08 Miao 2025 v2 deep-read); the cluster did NOT receive the `9aa2af4c` vendor-mapping retrofit commit (no companion retrofit commit this cluster); carried forward from the 2026-08-31T18:09Z fetch through the 11-day vault-silence period. Combined with the 2026-08-23/24 + 2026-08-24/25 bursts = **15 LDR files in 8 calendar days** |
| **Latest uncommitted artifacts (2026-08-13 → 2026-09-11, multi-file, unchanged across the 2026-08-26 → 2026-09-11 fetches)** | `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` (carry-forward untracked from 2026-08-13, now at **30-day carry-forward** at the 2026-09-11 fetch — file mtime `2026-08-11 16:31:54 +0800` so mtime-based carry-forward is 30 days; first-observation-date-based carry-forward is 28 days; **structural signal confirmed as one-off** per `/sources/git-repo.md` Notable-entity entry — 28 consecutive fetches silent on the file; the entry remains a stale / not recurring carry-forward note) + **2 prior untracked directories added at the 2026-08-17 fetch**, still-uncommitted at the 2026-09-11 fetch (**25-day carry-forward** each — was 24-day at the 2026-09-09 fetch, 23-day at the 2026-09-08 fetch, 22-day at the 2026-09-07 fetch, 21-day at the 2026-09-06 fetch, 20-day at the 2026-09-05 fetch, 19-day at the 2026-09-04 fetch, 18-day at the 2026-09-03 fetch, 17-day at the 2026-09-02 fetch, 16-day at the 2026-09-01 fetch, 15-day at the 2026-08-31 fetch, 14-day at the 2026-08-30 fetch, 13-day at the 2026-08-29 fetch, 12-day at the 2026-08-28 fetch, 11-day at the 2026-08-27 fetch, 10-day at the 2026-08-26 fetch): `celvivo_commercial/1331651_20260630_131201.pdf` (6-30 quote PDF migrated into new folder; **confirmed one-off at 2026-08-28 fetch** carrying forward unchanged at 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + **2026-09-11**) + `templates/类器官IRB申请清单.md` (180-line IRB application checklist derived from Guo 2026; Robin's first customer-facing template produced from a single deep-read — see the new Templates subtree below; **confirmed one-off at 2026-08-28 fetch** carrying forward unchanged at 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + **2026-09-11**) + **1 new untracked directory added at the 2026-08-24 fetch** — `deepread_40240593/` (7 subdirs: 5 PMID-named `deepread_<PMID>/` + 2 slug-named `deepread_brain_organoid_fluid/` + `deepread_shear_stress_cs_os/` that exactly map to the Aiello + CelVivo App Note papers; the new directory is Robin's LDR pipeline intermediate-artifact workspace, see `/sources/git-repo.md` Notable-entity § "deepread_40240593/ pipeline workspace"; **18-day carry-forward** at 2026-09-11, directory mtime unchanged since 2026-08-24 16:31 +0800, the working-folder pipeline hypothesis continues to weaken — the absence of mtime movement across the 2026-08-25 + 2026-08-26 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + **2026-09-11** fetches (17 consecutive silent fetches, plus the 2026-08-31 burst + the 2026-09-10 + 2026-09-11 resumption did NOT route through `deepread_<slug>/` working folders, **18 fetches silent on directory mtime**) suggests the pipeline may have been abandoned, formalized differently, or batched without intermediate commit) |
@@ -99,7 +99,7 @@ Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-09
| `Cellink/` | 129 | Cellink vendor + Cellink-adjacent papers |
| `Organoid-List/` | 51 | curated organoid reading lists |
| `Product-Reports/` | 38 | vendor product reports |
| `04-Literature/Deep-Reads/` root | +6 from 2026-08-23/24 + 2026-09-10 single-shot LDR bursts (CelVivo App Note + Aiello + Tian + Kim + Ajongbolo from 2026-08-23/24 + **Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid from the 2026-09-10 vault commit `1fd63019`** — Western University; **0 vendor callouts**) — **non-standard pattern** vs prior per-vendor subfolder discipline |
| `04-Literature/Deep-Reads/` root | +6 from 2026-08-23/24 + 2026-09-10 single-shot LDR bursts (CelVivo App Note + Aiello + Tian + Kim + Ajongbolo from 2026-08-23/24 + **Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid from the 2026-09-10 vault commit `1fd63019`** — Western University; **0 vendor callouts**) — **non-standard pattern** vs prior per-vendor subfolder discipline; **2026-09-13T18:08Z fetch observed 1 working-tree modification** at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800) — Robin actively editing MOC index but not yet committed; the MOC working-tree modification is the first vault-side artifact change since the 2026-08-31 burst |
| `Vascularized-Organoids/` | 2 (NEW 2026-08-25 subfolder — Tevonian + Shen vascularized liver MPS / organoid review) | vascularized organoid (Tevonian primary + Shen review) |
| `Cardiac-Organoids/` | 1 (NEW 2026-08-25 subfolder — Yang cardiac organoid review) | cardiac organoid |
| `Skin-Organoids/` | 1 (NEW 2026-08-25 subfolder — Zhai 3D skin pemphigus) | autoimmune dermatology + 3D skin (net-new application domain) |
@@ -116,9 +116,9 @@ Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-09
| `Retinal/` | 1 | retinal organoid |
| `Microbioreactor/` | 1 | Rosero 2026 Front Bioeng Biotechnol (added 2026-08-07) |
| `Cells/` | 1 | Fernandez Vallone 2026 Cells THSDC (added 2026-08-08) |
| `Review/` | 1 | Zhou 2023 computer vision + microfluidics (added 2026-08-13, **untracked**, **10-day carry-forward** at 2026-08-21 fetch (was 9-day at 2026-08-20) — **8 fetches silent** — structural signal continuing to weaken; **11-day carry-forward** at 2026-08-22 fetch — **9 fetches silent**; **12-day carry-forward** at 2026-08-23 fetch — **10 fetches silent**; **13-day carry-forward** at 2026-08-24 fetch — **11 fetches silent**; **14-day carry-forward** at 2026-08-25 fetch — **12 fetches silent**; **15-day carry-forward** at 2026-08-26 fetch — **13 fetches silent**; **16-day carry-forward** at 2026-08-27 fetch — **14 fetches silent** — **confirmed one-off interpretation at 2026-08-27 fetch** per the parallel `Review/` downgrade in `/sources/git-repo.md`; **17-day carry-forward** at 2026-08-28 fetch — **15 fetches silent** — **demoted to "stale / not recurring" carry-forward note** at the 2026-08-28 fetch; **18-day carry-forward** at 2026-08-29 fetch — **16 fetches silent** — carries forward unchanged at the 2026-08-29 fetch, the 2026-08-28 demotion still standing; **19-day carry-forward** at 2026-08-30 fetch — **17 fetches silent** — carries forward unchanged at the 2026-08-30 fetch, the 2026-08-28 demotion still standing; **20-day carry-forward** at 2026-08-31 fetch — **18 fetches silent** — carries forward unchanged at the 2026-08-31 fetch, the 2026-08-28 demotion still standing; **21-day carry-forward** at 2026-09-01 fetch — **19 fetches silent** — carries forward unchanged at the 2026-09-01 fetch, the 2026-08-28 demotion still standing; **22-day carry-forward** at 2026-09-02 fetch — **20 fetches silent** — carries forward unchanged at the 2026-09-02 fetch, the 2026-08-28 demotion still standing; **23-day carry-forward** at 2026-09-03 fetch — **21 fetches silent** — carries forward unchanged at the 2026-09-03 fetch, the 2026-08-28 demotion still standing; **24-day carry-forward** at 2026-09-04 fetch — **22 fetches silent** — carries forward unchanged at the 2026-09-04 fetch, the 2026-08-28 demotion still standing; **25-day carry-forward** at 2026-09-05 fetch — **23 fetches silent** — carries forward unchanged at the 2026-09-05 fetch, the 2026-08-28 demotion still standing; **26-day carry-forward** at 2026-09-06 fetch — **24 fetches silent** — carries forward unchanged at the 2026-09-06 fetch, the 2026-08-28 demotion still standing; **27-day carry-forward** at 2026-09-07 fetch — **25 fetches silent** — carries forward unchanged at the 2026-09-07 fetch, the 2026-08-28 demotion still standing; **28-day carry-forward** at 2026-09-08 fetch — **26 fetches silent** — carries forward unchanged at the 2026-09-08 fetch, the 2026-08-28 demotion still standing; **29-day carry-forward** at 2026-09-09 fetch — **27 fetches silent** — carries forward unchanged at the 2026-09-09 fetch, the 2026-08-28 demotion still standing; **30-day carry-forward** at 2026-09-11 fetch — **28 fetches silent** — carries forward unchanged at the 2026-09-11 fetch, the 2026-08-28 demotion still standing; entry is a stale carry-forward note) |
| `Review/` | 1 | Zhou 2023 computer vision + microfluidics (added 2026-08-13, **untracked**, **10-day carry-forward** at 2026-08-21 fetch (was 9-day at 2026-08-20) — **8 fetches silent** — structural signal continuing to weaken; **11-day carry-forward** at 2026-08-22 fetch — **9 fetches silent**; **12-day carry-forward** at 2026-08-23 fetch — **10 fetches silent**; **13-day carry-forward** at 2026-08-24 fetch — **11 fetches silent**; **14-day carry-forward** at 2026-08-25 fetch — **12 fetches silent**; **15-day carry-forward** at 2026-08-26 fetch — **13 fetches silent**; **16-day carry-forward** at 2026-08-27 fetch — **14 fetches silent** — **confirmed one-off interpretation at 2026-08-27 fetch** per the parallel `Review/` downgrade in `/sources/git-repo.md`; **17-day carry-forward** at 2026-08-28 fetch — **15 fetches silent** — **demoted to "stale / not recurring" carry-forward note** at the 2026-08-28 fetch; **18-day carry-forward** at 2026-08-29 fetch — **16 fetches silent** — carries forward unchanged at the 2026-08-29 fetch, the 2026-08-28 demotion still standing; **19-day carry-forward** at 2026-08-30 fetch — **17 fetches silent** — carries forward unchanged at the 2026-08-30 fetch, the 2026-08-28 demotion still standing; **20-day carry-forward** at 2026-08-31 fetch — **18 fetches silent** — carries forward unchanged at the 2026-08-31 fetch, the 2026-08-28 demotion still standing; **21-day carry-forward** at 2026-09-01 fetch — **19 fetches silent** — carries forward unchanged at the 2026-09-01 fetch, the 2026-08-28 demotion still standing; **22-day carry-forward** at 2026-09-02 fetch — **20 fetches silent** — carries forward unchanged at the 2026-09-02 fetch, the 2026-08-28 demotion still standing; **23-day carry-forward** at 2026-09-03 fetch — **21 fetches silent** — carries forward unchanged at the 2026-09-03 fetch, the 2026-08-28 demotion still standing; **24-day carry-forward** at 2026-09-04 fetch — **22 fetches silent** — carries forward unchanged at the 2026-09-04 fetch, the 2026-08-28 demotion still standing; **25-day carry-forward** at 2026-09-05 fetch — **23 fetches silent** — carries forward unchanged at the 2026-09-05 fetch, the 2026-08-28 demotion still standing; **26-day carry-forward** at 2026-09-06 fetch — **24 fetches silent** — carries forward unchanged at the 2026-09-06 fetch, the 2026-08-28 demotion still standing; **27-day carry-forward** at 2026-09-07 fetch — **25 fetches silent** — carries forward unchanged at the 2026-09-07 fetch, the 2026-08-28 demotion still standing; **28-day carry-forward** at 2026-09-08 fetch — **26 fetches silent** — carries forward unchanged at the 2026-09-08 fetch, the 2026-08-28 demotion still standing; **29-day carry-forward** at 2026-09-09 fetch — **27 fetches silent** — carries forward unchanged at the 2026-09-09 fetch, the 2026-08-28 demotion still standing; **30-day carry-forward** at 2026-09-11 fetch — **28 fetches silent** — carries forward unchanged at the 2026-09-11 fetch, the 2026-08-28 demotion still standing; **31-day carry-forward** at 2026-09-12 fetch — **29 fetches silent** — carries forward unchanged at the 2026-09-12 fetch; **32-day carry-forward** at 2026-09-13 fetch — **30 fetches silent** — carries forward unchanged at the 2026-09-13 fetch, the 2026-08-28 demotion still standing; entry is a stale carry-forward note) |
| `Templates/` | 1 | `类器官IRB申请清单.md` v1.0 (2026-08-16, derived from Guo 2026 ethics deep-read, **untracked**; first customer-facing template produced from a single deep-read; **5-day carry-forward** at 2026-08-21 fetch — was 4-day at 2026-08-20; **6-day carry-forward** at 2026-08-22 fetch; **7-day carry-forward** at 2026-08-23 fetch; **8-day carry-forward** at 2026-08-24 fetch; **9-day carry-forward** at 2026-08-25 fetch; **10-day carry-forward** at 2026-08-26 fetch; **11-day carry-forward** at 2026-08-27 fetch — **approaching confirmed one-off interpretation alongside the `Review/` entry**; **12-day carry-forward** at 2026-08-28 fetch — **11 fetches silent** — **now confirmed one-off alongside the `Review/` + `CelVivo-commercial/` entries** at the 2026-08-28 fetch; **13-day carry-forward** at 2026-08-29 fetch — **12 fetches silent** — carries forward unchanged at the 2026-08-29 fetch, the 2026-08-28 confirmation still standing; **14-day carry-forward** at 2026-08-30 fetch — **13 fetches silent** — carries forward unchanged at the 2026-08-30 fetch, the 2026-08-28 confirmation still standing; **15-day carry-forward** at 2026-08-31 fetch — **14 fetches silent** — carries forward unchanged at the 2026-08-31 fetch, the 2026-08-28 confirmation still standing; **16-day carry-forward** at 2026-09-01 fetch — **15 fetches silent** — carries forward unchanged at the 2026-09-01 fetch, the 2026-08-28 confirmation still standing; **17-day carry-forward** at 2026-09-02 fetch — **16 fetches silent** — carries forward unchanged at the 2026-09-02 fetch, the 2026-08-28 confirmation still standing; **18-day carry-forward** at 2026-09-03 fetch — **17 fetches silent** — carries forward unchanged at the 2026-09-03 fetch, the 2026-08-28 confirmation still standing; **19-day carry-forward** at 2026-09-04 fetch — **18 fetches silent** — carries forward unchanged at the 2026-09-04 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **20-day carry-forward** at 2026-09-05 fetch — **19 fetches silent** — carries forward unchanged at the 2026-09-05 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **21-day carry-forward** at 2026-09-06 fetch — **20 fetches silent** — carries forward unchanged at the 2026-09-06 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **22-day carry-forward** at 2026-09-07 fetch — **21 fetches silent** — carries forward unchanged at the 2026-09-07 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **23-day carry-forward** at 2026-09-08 fetch — **22 fetches silent** — carries forward unchanged at the 2026-09-08 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **24-day carry-forward** at 2026-09-09 fetch — **23 fetches silent** — carries forward unchanged at the 2026-09-09 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **25-day carry-forward** at 2026-09-11 fetch — **24 fetches silent** — carries forward unchanged at the 2026-09-11 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note) |
| `CelVivo-commercial/` | 1 | `1331651_20260630_131201.pdf` (2026-06-30 quote PDF migrated into new folder 2026-08-17, **untracked**; **5-day carry-forward** at 2026-08-21 fetch — was 4-day at 2026-08-20; **6-day carry-forward** at 2026-08-22 fetch; **7-day carry-forward** at 2026-08-23 fetch; **8-day carry-forward** at 2026-08-24 fetch; **9-day carry-forward** at 2026-08-25 fetch; **10-day carry-forward** at 2026-08-26 fetch; **11-day carry-forward** at 2026-08-27 fetch — **approaching confirmed one-off interpretation alongside the `Review/` + `Templates/` entries**; **12-day carry-forward** at 2026-08-28 fetch — **11 fetches silent** — **now confirmed one-off alongside the `Review/` + `Templates/` entries** at the 2026-08-28 fetch; **13-day carry-forward** at 2026-08-29 fetch — **12 fetches silent** — carries forward unchanged at the 2026-08-29 fetch, the 2026-08-28 confirmation still standing; **14-day carry-forward** at 2026-08-30 fetch — **13 fetches silent** — carries forward unchanged at the 2026-08-30 fetch, the 2026-08-28 confirmation still standing; **15-day carry-forward** at 2026-08-31 fetch — **14 fetches silent** — carries forward unchanged at the 2026-08-31 fetch, the 2026-08-28 confirmation still standing; **16-day carry-forward** at 2026-09-01 fetch — **15 fetches silent** — carries forward unchanged at the 2026-09-01 fetch, the 2026-08-28 confirmation still standing; **17-day carry-forward** at 2026-09-02 fetch — **16 fetches silent** — carries forward unchanged at the 2026-09-02 fetch, the 2026-08-28 confirmation still standing; **18-day carry-forward** at 2026-09-03 fetch — **17 fetches silent** — carries forward unchanged at the 2026-09-03 fetch, the 2026-08-28 confirmation still standing; **19-day carry-forward** at 2026-09-04 fetch — **18 fetches silent** — carries forward unchanged at the 2026-09-04 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **20-day carry-forward** at 2026-09-05 fetch — **19 fetches silent** — carries forward unchanged at the 2026-09-05 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **21-day carry-forward** at 2026-09-06 fetch — **20 fetches silent** — carries forward unchanged at the 2026-09-06 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **22-day carry-forward** at 2026-09-07 fetch — **21 fetches silent** — carries forward unchanged at the 2026-09-07 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **23-day carry-forward** at 2026-09-08 fetch — **22 fetches silent** — carries forward unchanged at the 2026-09-08 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **24-day carry-forward** at 2026-09-09 fetch — **23 fetches silent** — carries forward unchanged at the 2026-09-09 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **25-day carry-forward** at 2026-09-11 fetch — **24 fetches silent** — carries forward unchanged at the 2026-09-11 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note) |
| `CelVivo-commercial/` | 1 | `1331651_20260630_131201.pdf` (2026-06-30 quote PDF migrated into new folder 2026-08-17, **untracked**; **5-day carry-forward** at 2026-08-21 fetch — was 4-day at 2026-08-20; **6-day carry-forward** at 2026-08-22 fetch; **7-day carry-forward** at 2026-08-23 fetch; **8-day carry-forward** at 2026-08-24 fetch; **9-day carry-forward** at 2026-08-25 fetch; **10-day carry-forward** at 2026-08-26 fetch; **11-day carry-forward** at 2026-08-27 fetch — **approaching confirmed one-off interpretation alongside the `Review/` + `Templates/` entries**; **12-day carry-forward** at 2026-08-28 fetch — **11 fetches silent** — **now confirmed one-off alongside the `Review/` + `Templates/` entries** at the 2026-08-28 fetch; **13-day carry-forward** at 2026-08-29 fetch — **12 fetches silent** — carries forward unchanged at the 2026-08-29 fetch, the 2026-08-28 confirmation still standing; **14-day carry-forward** at 2026-08-30 fetch — **13 fetches silent** — carries forward unchanged at the 2026-08-30 fetch, the 2026-08-28 confirmation still standing; **15-day carry-forward** at 2026-08-31 fetch — **14 fetches silent** — carries forward unchanged at the 2026-08-31 fetch, the 2026-08-28 confirmation still standing; **16-day carry-forward** at 2026-09-01 fetch — **15 fetches silent** — carries forward unchanged at the 2026-09-01 fetch, the 2026-08-28 confirmation still standing; **17-day carry-forward** at 2026-09-02 fetch — **16 fetches silent** — carries forward unchanged at the 2026-09-02 fetch, the 2026-08-28 confirmation still standing; **18-day carry-forward** at 2026-09-03 fetch — **17 fetches silent** — carries forward unchanged at the 2026-09-03 fetch, the 2026-08-28 confirmation still standing; **19-day carry-forward** at 2026-09-04 fetch — **18 fetches silent** — carries forward unchanged at the 2026-09-04 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **20-day carry-forward** at 2026-09-05 fetch — **19 fetches silent** — carries forward unchanged at the 2026-09-05 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **21-day carry-forward** at 2026-09-06 fetch — **20 fetches silent** — carries forward unchanged at the 2026-09-06 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **22-day carry-forward** at 2026-09-07 fetch — **21 fetches silent** — carries forward unchanged at the 2026-09-07 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **23-day carry-forward** at 2026-09-08 fetch — **22 fetches silent** — carries forward unchanged at the 2026-09-08 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **24-day carry-forward** at 2026-09-09 fetch — **23 fetches silent** — carries forward unchanged at the 2026-09-09 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **25-day carry-forward** at 2026-09-11 fetch — **24 fetches silent** — carries forward unchanged at the 2026-09-11 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note; **26-day carry-forward** at 2026-09-12 fetch — **25 fetches silent** — carries forward unchanged at the 2026-09-12 fetch; **27-day carry-forward** at 2026-09-13 fetch — **26 fetches silent** — carries forward unchanged at the 2026-09-13 fetch, the 2026-08-28 confirmation still standing; entry is a stale carry-forward note) |
Total ≈ 1,211 deep-read notes on `main` (+5 new LDR files from the 2026-08-31 CelVivo-cluster on top of +4 from the 2026-08-24/25 cluster + +5 from the 2026-08-23/24 single-shot LDR burst + +2 from the 2026-08-16 Quintard 2024 + Guo 2026 clusters; the 5th 2026-08-25 commit `9aa2af4c` is an in-place `M` touch on Tevonian + Yang files, not a new file). The 4 vendor subfolders (Celvivo / 3Brain / Cellink / Organoid) cover the canonical product KB per the wiki goal focus areas. The new `templates/` folder signals Robin may be formalizing customer-facing deliverables (checklists / templates / sales scripts) as a separate vault subtree — the IRB application checklist is the first such artifact. The 2026-08-31 cluster creates the **NEW `CelVivo/` (capital-V) parallel subfolder** — Robin's first parallel-naming deep-read subfolder convention.
@@ -423,4 +423,6 @@ These are source-anchored but not vendor-anchored — they live here for traceab
| What does Quintard 2024 say about vascularized organoid chips? | `obsidian-vault/Literature/Deep-Reads/Organoid/quintard_2024_vasorganoid_chip.md` (vault path; deep-read synthesis not yet split out to `/sources/`) |
| What does Guo 2026 say about organoid IRB ethics? | `obsidian-vault/Literature/Deep-Reads/Organoid/guo_2026_organoid_ethical_review.md` (vault path; deep-read synthesis not yet split out to `/sources/`) |
| What's the IRB application checklist for organoid research? | `templates/类器官IRB申请清单.md` v1.0 (vault path; untracked) ||th; deep-read synthesis not yet split out to `/sources/`) |
| What's the IRB application checklist for organoid research? | `templates/类器官IRB申请清单.md` v1.0 (vault path; untracked) ||t path; untracked) || ||) || ||) || ||ethical_review.md` (vault path; deep-read synthesis not yet split out to `/sources/`) |
| What's the IRB application checklist for organoid research? | `templates/类器官IRB申请清单.md` v1.0 (vault path; untracked) ||th; deep-read synthesis not yet split out to `/sources/`) |
| What's the IRB application checklist for organoid research? | `templates/类器官IRB申请清单.md` v1.0 (vault path; untracked) ||t path; untracked) || ||) || ||) || ||
+1 -1
View File
@@ -4,4 +4,4 @@
- [Theme 2 · 3D bioprinting (Cellink / BIONOVA)](02-bioprinting.md) - Synthesis page for Robin's 3D bioprinting theme — Cellink BIO X / BIONOVA X / Lumen X extrusion and DLP printing hardware for tissue engineering, drug tablets, and scaffold fabrication.
- [Theme 3 · AI Agent tools (Hermes / Codex / MiniMax code)](03-ai-agents.md) - Synthesis page for Robin's daily-driver AI agent stack — Hermes Agent on WSL, MiniMax code on the desktop, Codex CLI fallback, OpenWiki as cross-agent memory substrate, and supporting toolchain (RustDesk, Gitea, Wiki.js, RAGFlow).
- [Theme 4 · Local LLM deployment (Ollama / bge-reranker / RAGFlow)](04-local-llm.md) - Synthesis page for Robin's local-LLM fleet — Ollama serve + qwen2.5vl:7b vision model + BAAI/bge-m3 embeddings (Ollama + LM Studio) + bge-reranker rerank + RAGFlow KB retrieval + adjacent NAS subsystems (NocoDB / SeaFile / Wiki.js / Feishu mail).
- [Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)](05-robin-research.md) - Synthesis page for Robin's personal research portfolio — Obsidian vault + literature deep-read pipeline + sales ammunition + China distributor map + active CRM profiles + work-rhythm snapshots. Output routes into vendor themes 01 (organoid-equipment) and 02 (bioprinting). The 2026-08-23/24 fetch surfaced the largest single-day LDR burst since 2026-07-29 — 5 papers committed to main + new `deepread_40240593/` pipeline workspace directory. The 2026-08-26 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 fetches observed vault HEAD unchanged at `9d4767c7` (vault silent for the 1st + 2nd + 3rd + 4th + 5th consecutive fetches since the 2026-08-24/25 SECOND 5-paper LDR burst, 5 calendar days stale). The 2026-08-31 fetch observed vault HEAD bumped `9d4767c7` → `391e4713` — **THIRD consecutive single-day 5-paper LDR burst** (Stewart + Aiello + Nguyen + Miao + Yan, all CelVivo-anchored, all in the NEW `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V subfolder — Robin's first parallel-naming deep-read subfolder convention), ending the 5-day vault silence; combined with the 2026-08-23/24 + 2026-08-24/25 clusters, **15 LDR files in 8 calendar days = the largest sustained 8-day research output** in Robin's vault activity log. The 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 fetches observed vault HEAD unchanged at `391e4713` (vault silent for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th consecutive fetches since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR burst, **9 calendar days stale**). The 2026-09-11 fetch observed vault HEAD bumped `391e4713` → **`09bec367`** — **vault silence streak BROKEN after 11 calendar days** with **2 new vault commits**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); the pipeline has resumed after the 11-day pause. The 4 carry-forward untracked directories (Review + templates + celvivo_commercial + deepread_40240593) bump their carry-forward counts to **30/25/25/18 days** at the 2026-09-11T18:14Z fetch — the `Review/` + `templates/` + `celvivo_commercial/` entries remain **confirmed one-off** (carrying forward unchanged since the 2026-08-28 fetch) and continue as stale / not recurring carry-forward notes; the `deepread_40240593/` working-folder pipeline hypothesis continues to weaken (mtime unchanged across 17 consecutive silent fetches since the 2026-08-24/25 burst).
- [Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)](05-robin-research.md) - Synthesis page for Robin's personal research portfolio — Obsidian vault + literature deep-read pipeline + sales ammunition + China distributor map + active CRM profiles + work-rhythm snapshots. Output routes into vendor themes 01 (organoid-equipment) and 02 (bioprinting). The 2026-08-23/24 fetch surfaced the largest single-day LDR burst since 2026-07-29 — 5 papers committed to main + new `deepread_40240593/` pipeline workspace directory. The 2026-08-26 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 fetches observed vault HEAD unchanged at `9d4767c7` (vault silent for the 1st + 2nd + 3rd + 4th + 5th consecutive fetches since the 2026-08-24/25 SECOND 5-paper LDR burst, 5 calendar days stale). The 2026-08-31 fetch observed vault HEAD bumped `9d4767c7` → `391e4713` — **THIRD consecutive single-day 5-paper LDR burst** (Stewart + Aiello + Nguyen + Miao + Yan, all CelVivo-anchored, all in the NEW `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V subfolder — Robin's first parallel-naming deep-read subfolder convention), ending the 5-day vault silence; combined with the 2026-08-23/24 + 2026-08-24/25 clusters, **15 LDR files in 8 calendar days = the largest sustained 8-day research output** in Robin's vault activity log. The 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 fetches observed vault HEAD unchanged at `391e4713` (vault silent for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th consecutive fetches since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR burst, **9 calendar days stale**). The 2026-09-11 fetch observed vault HEAD bumped `391e4713` → **`09bec367`** — **vault silence streak BROKEN after 11 calendar days** with **2 new vault commits**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); the pipeline has resumed after the 11-day pause. The 4 carry-forward untracked directories (Review + templates + celvivo_commercial + deepread_40240593) bump their carry-forward counts to **30/25/25/18 days** at the 2026-09-11T18:14Z fetch — the `Review/` + `templates/` + `celvivo_commercial/` entries remain **confirmed one-off** (carrying forward unchanged since the 2026-08-28 fetch) and continue as stale / not recurring carry-forward notes; the `deepread_40240593/` working-folder pipeline hypothesis continues to weaken (mtime unchanged across 17 consecutive silent fetches since the 2026-08-24/25 burst). The **2026-09-13T18:08Z fetch** is the **31st git-repo-1 fetch of the 2026-08-07 streak** + the **2nd consecutive vault-silent fetch** after the Tomas 2026 + Vijakumaran 2026 resumption (vault HEAD unchanged at `09bec367`); **1 working-tree modification** was observed at `04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800) — Robin actively editing the MOC index file but NOT yet committed; the 4 carry-forward untracked directories bump to **32/27/27/20 days** at the 2026-09-13T18:08Z fetch (the highest carry-forward durations of the 2026-08-07 streak); 4 new automated wiki commits in the 48-hour window (`7cfb801` sources-sync 2026-09-12 twenty-ninth + `999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 + `5f33bd3` sources-sync 2026-09-13 thirtieth) bumped wiki HEAD `55d930f` → `5f33bd3`; the 8-dirty-file baseline (down from the prior 10-dirty-file baseline) shows the daily-update cycle cleared `index.md` + `quickstart.md` + `sources/git-repo.md` + `themes.md` while `sources/openwiki-version-drift.md` was newly re-touched; synthesis-layer impact is **none** because vault produced no new external evidence.