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chore: daily update 2026-09-14

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@@ -3,9 +3,11 @@ type: "Reference"
title: "Robin's Local Knowledge Base"
description: >
OpenWiki entrypoint and orientation — Robin's personal knowledge base with 5 synthesis themes (organoid equipment, bioprinting, AI agents, local LLM, personal research), navigation map, current connector status, and backlog. The 2026-09-11 18:14 UTC git-repo-1 fetch is the **twenty-ninth pull since 2026-08-07** — observed **vault HEAD bumped `391e4713` → `09bec367`** with **2 new vault commits** ending the **11-day vault silence streak**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); wiki HEAD bumped `7e2072c` → `55d930f` via 4 automated wiki commits (`299eeab` sources-sync 2026-09-10 twenty-seventh + `1e6a7cb` daily update 2026-09-10 + `2bf104e` daily update 2026-09-11 + `55d930f` sources-sync 2026-09-11 twenty-eighth); 4 carry-forward untracked directories bumped to 30/25/25/18-day carry-forward; 10 uncommitted wiki files in working tree (same shape as the 2026-09-10T18:19Z fetch); 1 new untracked `NO` file surfaced in wiki working tree. The 2026-09-12 18:00 UTC hackernews-1 fetch is the **thirty-third pull since 2026-08-07**, surfacing **the 1st `substring-noise-only Algolia lane on 4 of 6 + clean zero on 2 of 6` pull of the 2026-08-07 streak** (same shape as the 2026-09-10 prior pull with substring-noise on 3 of 6 + clean zero on 3 of 6, distinct from the 2026-09-11 fully-zero Algolia lane pull + the 2026-09-09 `nbHits-positive-but-items-zero` materialization-gap pull + the 2026-09-08 fully-zero pull) — `organoid` returned `nbHits=3 / hits=3` (3 substring-noise hits on the `organi-`/`organiz-` stem: `Ask HN: Did anyone try to build game engine purely for LLM` 4 pts + `Ask HN: New way of organizing Mathematical Research` 2 pts + `Show HN: Fog 2.0: I removed the AI auto-organizing I built my first app around` 1 pt) + `3Brain` returned `nbHits=8 / hits=8` (8 `brain`-substring collisions including `They Stole Our Code, Now They Want Our Brains (March 2026)` 8 pts + `A Fruit Fly's Disembodied Brain Is Now Trading Bitcoin on Coinbase` 3 pts + fruit-fly-brain mapping + `Brainstorming novel biological attacks with an LLM` 2 pts) + `Cellink` returned `nbHits=5 / hits=5` (5 substring-noise collisions including `At this point I feel like AI companies selling Fear` 13 pts + `Ask HN: Software people, where are you taking your careers next?` 12 pts + `Rust-split – save your tokens on large Rust source files` 4 pts); `CelVivo` + `openwiki` + `deepagents` returned clean zero on both `nbHits` and `hits` — **seventeenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal; **23 unique top+best items** (top 18/30 + best 10/30 - 5 overlap: `49668386` google.com/goto + `49671329` Fuck it make it anyway + `49668706` Navier-Stokes + `49672510` We must pace the frontier + `49670032` Apple ANE reverse-engineering — the 23-item dedup count is -2 from the 2026-09-11 pull's 25 unique, the **lowest 23-item dedup count of the 2026-08-07 streak**; the 5 overlap count is +2 from the 2026-09-11 pull's 3, the **first 5-overlap dedup of the 2026-08-07 streak since the 2026-09-08 pull's 5 overlap**). **The highest-engagement item of the pull** is **`49666735` "OpenAI agents carried out an undisclosed attack on RubyGems"** (889 pts best + 524 cmts, by `chao-` 2026-09-12, https://www.rubyhack.ai/ — RubyGems supply-chain security incident; **0.59 cmts-to-upvote ratio** indicates substantive security-research discussion; **off-scope per scope** because the item is a Ruby/RubyGems supply-chain attack writeup rather than a vendor release / framework / schema / named-stack signal; the **889-pt engagement is the 3rd-highest single-item of the entire 2026-08-07 streak** after the 2026-09-04 GPT-6 Astra `49554643` 2080 pts + the 2026-09-10 iPhone Duo `49630931` 1350 pts + the 2026-08-27 Nvidia-Hugging Face acquisition `49458161` 1719 pts — the **highest single best-feed item of the 2026-08-07 streak** at 889 pts + 524 cmts). **Two high-engagement named-stack-adjacent items**: (1) **`49672510` "We must pace the frontier"** (206 pts top + 278 cmts top, by `apsec112` 2026-09-12, https://darioamodei.com/post/we-must-pace-the-frontier — **Anthropic CEO Dario Amodei blog post** on AI development pacing; **0.78 cmts-to-upvote ratio** indicates substantive AI-policy discussion; **adjacent-not-promoted per scope** because Anthropic is not on Robin's named stack + the entry is a CEO AI-policy essay rather than a model release; the 12th entry candidate in the AI-vendor-business-stack cluster if promoted but adjacent-not-promoted per scope); (2) **`49673098` "Nvidia is the central bank of AI"** (168 pts top+best + 143 cmts, by `tolugenius` 2026-09-12, https://www.economist.com/interactive/briefing/2026/09/03/nvidia-is-the-central-baLine truncated
tags: [quickstart, navigation, openwiki, status, 2026-09-12, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, vault-silent-7d, vault-silent-8d, vault-silent-9d, vault-silent-4d, vault-silent-5d, vault-silent-6d, vault-silent-3d, vault-silent-2d, vault-silence-broken, vault-resumed-after-11d, fourteenth-sources-sync, fifteenth-sources-sync, sixteenth-sources-sync, seventeenth-sources-sync, eighteenth-sources-sync, nineteenth-sources-sync, twentieth-sources-sync, twenty-first-sources-sync, twenty-second-sources-sync, twenty-third-sources-sync, twenty-fourth-sources-sync, twenty-fifth-sources-sync, twenty-sixth-sources-sync, twenty-seventh-sources-sync, twenty-eighth-sources-sync, twentieth-hn-pull, twenty-first-hn-pull, twenty-second-hn-pull, twenty-third-hn-pull, twenty-fourth-hn-pull, twenty-fifth-hn-pull, twenty-sixth-hn-pull, twenty-seventh-hn-pull, twenty-eighth-hn-pull, twenty-ninth-hn-pull, thirtieth-hn-pull, thirty-first-hn-pull, thirty-second-hn-pull, thirty-third-hn-pull, nineteenth-hn-pull, sixteenth-websearch-skip, twentieth-websearch-skip, twenty-first-websearch-skip, twenty-second-websearch-skip, twenty-third-websearch-skip, twenty-fourth-websearch-skip, twenty-fifth-websearch-skip, twenty-sixth-websearch-skip, twenty-seventh-websearch-skip, twenty-eighth-websearch-skip, twenty-ninth-websearch-skip, templates-celvivo-commercial-confirmed-one-off, tencent-hy4-adjacent, almanac-yc-s26-wikis-as-agent-memory, qwen38-flash-next-mac-12th-cluster-entry, m4-pro-mac-mini-local-model-13th-cluster-entry, k2-horizon-14th-cluster-entry, qwen-38-27b-cerebras-15th-cluster-entry, gemini-38-flash-closed-weight-adjacent, muse-spark-closed-weight-adjacent, gpt-6-astra-highest-engagement-streak, gpt-6-astra-openrouter-5th-closed-weight-cluster-entry, anthropic-formalizing-fl-t-anthropic-business-stack-adjacent, portal-by-spotify-claude-code-token-usage-adjacent, collusion-wiki-agent-message-board-adjacent, china-commercial-bci-implant-watchlist-anchor, cloud-in-a-bottle-8th-cluster-entry, asahi-linux-m3-adjacent, openai-an-alien-mind-adjacent, fruit-fly-brain-connectome-watchlist-adjacent, deepread-40240593-sixteen-silent-fetches, deepread-40240593-eighteen-silent-fetches, mistral-raises-3b-eur-sovereign-openweight-adjacent, google-jail-for-independent-wikis-openwiki-adjacent, alphagenome-atlas-deepmind-closed-weight-adjacent, libreoffice-no-ai-features-590pt-named-stack-adjacent, jellyfin-12-556pt-off-scope, navier-stokes-openai-271pt-closed-weight-adjacent, i-have-adhd-coding-skill-107pt-named-stack-adjacent, qwen38-27b-quantization-benchmark-95pt-borderline, fifth-fully-zero-algolia-lane, deepseek-v41-flash-801pt-16th-cluster-adjacent, openai-training-toggle-8th-business-stack-entry, openai-proof-stolen-9th-business-stack-entry, openai-unpublished-math-10th-business-stack-entry, ai-vendor-business-stack-cluster-10-items, cognition-swe-2-coding-agent-adjacent, eighth-vault-silence-fetch, ninth-vault-silence-fetch, twenty-fifth-git-repo-fetch, twenty-sixth-git-repo-fetch, twenty-seventh-git-repo-fetch, twenty-eighth-git-repo-fetch, twenty-ninth-git-repo-fetch, sixth-fully-zero-algolia-lane, openai-agents-api-11th-business-stack-entry, astra-for-coding-named-stack-adjacent, claude-age-assurance-closed-weight-adjacent, rtk-token-savings-named-stack-adjacent, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, openai-agents-rubygems-attack-889pt-off-scope, dario-amodei-we-must-pace-the-frontier-12th-business-stack-candidate, nvidia-is-the-central-bank-of-ai-168pt-adjacent, ilands-ai-agent-spam-78pt-off-scope, apple-ane-reverse-engineering-189pt-off-scope, first-substring-noise-only-on-4-of-6-algolia-lane, lowest-23-item-dedup-count-streak, first-5-overlap-dedup-since-2026-09-08]
timestamp: 2026-09-12T18:00:00Z
tags: [quickstart, navigation, openwiki, status, 2026-09-13, 2026-09-12, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, vault-silent-7d, vault-silent-8d, vault-silent-9d, vault-silent-4d, vault-silent-5d, vault-silent-6d, vault-silent-3d, vault-silent-2d, vault-silence-broken, vault-resumed-after-11d, fourteenth-sources-sync, fifteenth-sources-sync, sixteenth-sources-sync, seventeenth-sources-sync, eighteenth-sources-sync, nineteenth-sources-sync, twentieth-sources-sync, twenty-first-sources-sync, twenty-second-sources-sync, twenty-third-sources-sync, twenty-fourth-sources-sync, twenty-fifth-sources-sync, twenty-sixth-sources-sync, twenty-seventh-sources-sync, twenty-eighth-sources-sync, twentieth-hn-pull, twenty-first-hn-pull, twenty-second-hn-pull, twenty-third-hn-pull, twenty-fourth-hn-pull, twenty-fifth-hn-pull, twenty-sixth-hn-pull, twenty-seventh-hn-pull, twenty-eighth-hn-pull, twenty-ninth-hn-pull, thirtieth-hn-pull, thirty-first-hn-pull, thirty-second-hn-pull, thirty-third-hn-pull, nineteenth-hn-pull, sixteenth-websearch-skip, twentieth-websearch-skip, twenty-first-websearch-skip, twenty-second-websearch-skip, twenty-third-websearch-skip, twenty-fourth-websearch-skip, twenty-fifth-websearch-skip, twenty-sixth-websearch-skip, twenty-seventh-websearch-skip, twenty-eighth-websearch-skip, twenty-ninth-websearch-skip, templates-celvivo-commercial-confirmed-one-off, tencent-hy4-adjacent, almanac-yc-s26-wikis-as-agent-memory, qwen38-flash-next-mac-12th-cluster-entry, m4-pro-mac-mini-local-model-13th-cluster-entry, k2-horizon-14th-cluster-entry, qwen-38-27b-cerebras-15th-cluster-entry, gemini-38-flash-closed-weight-adjacent, muse-spark-closed-weight-adjacent, gpt-6-astra-highest-engagement-streak, gpt-6-astra-openrouter-5th-closed-weight-cluster-entry, anthropic-formalizing-fl-t-anthropic-business-stack-adjacent, portal-by-spotify-claude-code-token-usage-adjacent, collusion-wiki-agent-message-board-adjacent, china-commercial-bci-implant-watchlist-anchor, cloud-in-a-bottle-8th-cluster-entry, asahi-linux-m3-adjacent, openai-an-alien-mind-adjacent, fruit-fly-brain-connectome-watchlist-adjacent, deepread-40240593-sixteen-silent-fetches, deepread-40240593-eighteen-silent-fetches, mistral-raises-3b-eur-sovereign-openweight-adjacent, google-jail-for-independent-wikis-openwiki-adjacent, alphagenome-atlas-deepmind-closed-weight-adjacent, libreoffice-no-ai-features-590pt-named-stack-adjacent, jellyfin-12-556pt-off-scope, navier-stokes-openai-271pt-closed-weight-adjacent, i-have-adhd-coding-skill-107pt-named-stack-adjacent, qwen38-27b-quantization-benchmark-95pt-borderline, fifth-fully-zero-algolia-lane, deepseek-v41-flash-801pt-16th-cluster-adjacent, openai-training-toggle-8th-business-stack-entry, openai-proof-stolen-9th-business-stack-entry, openai-unpublished-math-10th-business-stack-entry, ai-vendor-business-stack-cluster-10-items, cognition-swe-2-coding-agent-adjacent, eighth-vault-silence-fetch, ninth-vault-silence-fetch, twenty-fifth-git-repo-fetch, twenty-sixth-git-repo-fetch, twenty-seventh-git-repo-fetch, twenty-eighth-git-repo-fetch, twenty-ninth-git-repo-fetch, thirtieth-git-repo-fetch, thirty-first-git-repo-fetch, moc-organoid-3d-culture-uncommitted-edit, sixth-fully-zero-algolia-lane, openai-agents-api-11th-business-stack-entry, astra-for-coding-named-stack-adjacent, claude-age-assurance-closed-weight-adjacent, rtk-token-savings-named-stack-adjacent, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, openai-agents-rubygems-attack-889pt-off-scope, dario-amodei-we-must-pace-the-frontier-12th-business-stack-candidate, nvidia-is-the-central-bank-of-ai-168pt-adjacent, ilands-ai-agent-spam-78pt-off-scope, apple-ane-reverse-engineering-189pt-off-scope, first-substring-noise-only-on-4-of-6-algolia-lane, lowest-23-item-dedup-count-streak, first-5-overlap-dedup-since-2026-09-08]
timestamp: 2026-09-13T18:08:00Z
---
**Latest update — git-repo-1 (2026-09-13T18:08Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-09-13T18-08-XX-XXXZ/manifest.json`. **Vault HEAD unchanged** at `09bec36702cdbd8ef1d2644919ca337248ae6bff` (the 2026-09-11T18:14Z baseline that persisted through the 2026-09-12T18:08Z intermediate fetch) — **0 new vault commits** in the 2026-09-12T18:08Z → 2026-09-13T18:08Z 24-hour window. This is the **2nd consecutive fetch with vault silent** since the Tomas 2026 + Vijakumaran 2026 vault-silence-broken event at the 2026-09-11T18:14Z fetch. The Tomas + Vijakumaran pair remains the most recent committed vault activity. **1 working-tree modification** was observed at the 2026-09-13T18:08Z fetch — `M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"` (mtime `2026-09-13 11:55:42 +0800`, today) — Robin is actively editing the 类器官与3D培养 MOC index file but has NOT yet committed the changes. This is the **first vault working-tree modification observed since the 2026-08-24/25 burst's intermediate-commit pattern was abandoned** — it indicates the start of a new burst-cycle but the new burst has not yet produced committed vault activity. **8 untracked regional agent files** from 2026-08-07 persist unchanged. **Wiki HEAD bumped** from `55d930ffbc0a658aa335683f0d412496b32af549` (2026-09-11T18:14Z fetch) to **`5f33bd3015e3ac6b740702d55888ba93fe024eab`** (2026-09-13T18:08Z fetch); **4 new automated wiki commits** in the 2026-09-12T18:08Z → 2026-09-13T18:08Z 48-hour window (the intermediate 2026-09-12T18:08Z fetch + this 2026-09-13T18:08Z fetch): (a) `7cfb801` 2026-09-12 chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern after `55d930f` 2026-09-11 + `2bf104e` 2026-09-11 + `1e6a7cb` 2026-09-10 + `299eeab` 2026-09-10 + ... + `2507925` 2026-08-15; per `git show --stat 7cfb801` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files) + (b) `999a37d` 2026-09-12 chore: daily update 2026-09-12 (per `git show --stat 999a37d` the commit touched 15 files from the prior dirty set including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — the same 15-16 file shape as the prior daily updates + the new `NO` untracked stray-test-artifact file `Has \n?: 0` was introduced at this commit) + (c) `0447186` 2026-09-13 chore: daily update 2026-09-13 (per `git show --stat 0447186` the commit touched 12 files from the prior dirty set including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md`) + (d) `5f33bd3` 2026-09-13 chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern; per `git show --stat 5f33bd3` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`). **8 uncommitted wiki files** in working tree per the manifest `changedFiles` list at this fetch (`M .last-update.json` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md`) — **different shape from the 10-dirty-file baseline at the 2026-09-11T18:14Z fetch**: the `999a37d` daily update cleared `index.md` + `quickstart.md` + `sources/git-repo.md` + `themes.md` (the daily-update cycle re-touched them and the metadata cycle did not re-touch them at this fetch); `sources/openwiki-version-drift.md` was re-touched in this cycle (was not in the prior 10-dirty-file baseline); sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) + the metadata cycle re-touched `.last-update.json` + `sources/hackernews.md` + `sources/web-search.md`; the 8-dirty-file list does not include `index.md` + `quickstart.md` + `sources/git-repo.md` + `themes.md` (cleared by the daily-update cycle) or `commitments.md` + `open-questions.md` + `sources/README.md` + `sources/iLine truncated
**Latest update — git-repo-1 (2026-09-11T18:14Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-09-11T18-14-12-972Z/manifest.json`. **Vault HEAD bumped** from `391e47131679ce9edf0f525236e78ebb13e0d232` (the 2026-08-31T13:42 +0800 baseline that had persisted for 11 consecutive fetches) to **`09bec36702cdbd8ef1d2644919ca337248ae6bff`** — **vault silence streak BROKEN after 11 calendar days** at the 2026-09-10T18:19Z → 2026-09-11T18:14Z fetch; **2 new vault commits** in the 24-hour window: (a) `1fd63019` 2026-09-10 — `feat(literature): Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read` — adds `obsidian-vault/04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md` (Tomas EJ, Davis J, Ramos Valdes Y, Shepherd TG 2026, Cancer Biol Ther 27(1):2611602, Western University, PMID 41520277, PMC12795296 gold OA, Wiki.js 1787 — 0 vendor callouts, spheroid = ULA static plate + organoid = Cultrex BME); (b) `09bec367` 2026-09-11 — `literature: 精读 NocoDB Id=3029 Air-liquid interface-centered oxygen engineering in human br (飞轮 v4 自动 sink)` — adds `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md` (Vijakumaran 2026 brain-organoid ALI-centered oxygen engineering, **first v4 Flywheel auto-sink pipeline entry** — the first deep-read committed by the automated flywheel pipeline rather than by Robin's manual commit). The combined cluster breaks the 11-day vault silence with 2 application-domain papers: 1 HGSC ovarian-cancer PDO precision-medicine paper + 1 brain-organoid ALI oxygen-engineering paper; both papers extend Robin's `class-organoid-3d-bioprinting` theme evidence footprint (Tomas = HGSC precision oncology + spheroid/organoid combo; Vijakumaran = CelVivo ClinoStar-adjacent brain-organoid long-term culture + ALI oxygen engineering, 3Brain HD-MEA-adjacent for downstream e-phys validation). The **non-standard `04-Literature/Deep-Reads/` root-level pattern** continues (Tomas commit landed at root-level, not in a per-vendor / per-application-domain subfolder) but Vijakumaran's commit landed in the `Organoid/` subfolder — the first dual-pathway pattern (root + per-domain) in Robin's LDR SOP. **Wiki HEAD** bumped from `7e2072cef52a842ccde9daab27ad82699c9e127c` (2026-09-09T18:11Z fetch) to **`55d930ffbc0a658aa335683f0d412496b32af549`** (2026-09-11T18:14Z fetch); **4 new automated wiki commits** in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window: (a) `299eeab` 2026-09-10 chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern after `7e2072c` 2026-09-09 + `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15; per `git show --stat 299eeab` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files) + (b) `1e6a7cb` 2026-09-10 chore: daily update 2026-09-10 (per `git show --stat 1e6a7cb` the commit touched 16 files from the prior dirty set including `.last-update.json` + `open-questions.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — reducing uncommitted-file count from 10 → ~5) + (c) `2bf104e` 2026-09-11 chore: daily update 2026-09-11 (per `git show --stat 2bf104e` the commit touched 15 files from the prior dirty set including `.last-update.json` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` — the daily update cycle continues to re-touch the same 15-16 file shape) + (d) `55d930f` 2026-09-11 chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the `2507925` 2026Line truncated
OpenWiki entrypoint and orientation — Robin's personal knowledge base with 5 synthesis themes (organoid equipment, bioprinting, AI agents, local LLM, personal research), navigation map, current connector status, and backlog. **Latest update — hackernews-1 (2026-09-11T18:00Z).** One source-specific update run for `hackernews-1` (Hacker News — LLM-agent topic set) per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=hackernews` and wrote raw data at `~/.openwiki/connectors/hackernews/raw/2026-09-11T18-00-02-196Z/hackernews-results.json`. 2 feeds (`top` 30 IDs / 21 resolved + `best` 30 IDs / 7 resolved) → **25 unique top+best items** (3 overlap: `49656225` Claude 18+ + `49649213` OpenAI Agents API + `49658299` Houthis key island — the 25-item dedup count is -4 from the 2026-09-10 pull's 29 unique, the **first 25-item dedup count of the 2026-08-07 streak**). The 6-query lane returned the **6th `fully-zero Algolia lane` pull of the 2026-08-07 streak** — same shape as the 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-09-04 + 2026-09-08 fully-zero pulls (all 6 Algolia queries returned `dbHit=null / hits=0` with no substring-noise false positives); `organoid` + `CelVivo` + `3Brain` + `Cellink` + `openwiki` + `deepagents` each returned clean `dbHit=null / hits=0`; **sixteenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal. The connector completed normally at `fetchedAt: 2026-09-11T18:00:33.613Z` (24-hour window). This is the **32nd pull since 2026-08-07** (after 31 prior pulls — 5 fully-zero + 6 substring-noise-only + 7 dbHits-positive-but-items-zero + 12 other [normal-noise-only / items-aggregated]). Tavily (web-search) remains the productive lane for vendor news. **The highest-engagement item of the pull** is **`49657850` "Ask HN: Can we please limit the AI news flood?"** (679 pts best + 334 cmts, by `cromka` 2026-09-11 — meta HN discussion on AI-news volume; **0.49 cmts-to-upvote ratio** indicates substantive community feedback; **off-scope per scope** because the item is a meta HN discussion rather than a vendor / framework / schema / named-stack signal). **The highest-engagement named-stack-adjacent AI-agent platform launch of the pull** is **`49649213` "OpenAI Agents API"** (333 pts top+best + 169 cmts, by `aquir` 2026-09-10, https://developers.openai.com/api/docs/guides/agents-api/overview — **OpenAI's new Agents API platform launch**; **0.51 cmts-to-upvote ratio** indicates substantive engineering discussion; **adjacent-not-promoted per scope** because OpenAI is closed-weight and not on Robin's named stack — Hermes / MiniMax-M3+H3 / OpenWiki / RAGFlow / NocoDB / SeaFile / Codex CLI are the named agents; the **333-pt engagement** would be the **11th entry candidate** in the AI-vendor-business-stack cluster, joining the 2026-09-05 `49568506` Anthropic FLT formalization 706 pts (7th entry) + 2026-09-10 `49643556` OpenAI training-toggle 383 pts (8th entry) + 2026-09-10 `49638353` OpenAI proof stolen 283 pts (9th entry) + 2026-09-10 `49639408` OpenAI unpublished math 210 pts (10th entry); the cluster would grow from 10 items / ~4,104+ pts to **11 items / ~4,437+ pts across 9 pulls over 12 days** if promoted, but **adjacent-not-promoted per scope** because OpenAI is closed-weight and not on Robin's named stack + the entry is a new AI-agent platform launch rather than the privacy / IP / business-stack signal that the existing 4 OpenAI cluster entries describe). **Other named-stack-adjacent items on this pull**: **`49654229` "Astra for Coding: Why Are We Doing This Again?"** (406 pts best + 311 cmts, by `manojbajaj95` 2026-09-11, https://lucumr.pocoo.org/2026/9/7/astra-why/ — Armin Ronacher's blog post on Astra for Coding + critical reflection on AI-coding-tool proliferation; **0.77 cmts-to-upvote ratio** indicates substantive engineering discussion; **adjacent-not-promoted per scope** because Astra is not on Robin's named coding-agent stack — Codex CLI is the named coding-agent — but the **direct cross-walk to the Codex CLI / coding-agent-tooling cluster** is structurally adjacent because the item is a high-engagement reflection on the AI-coding-tool category that Codex CLI belongs to; **3rd-highest coding-agent-tooling item of the 2026-08-07 streak** after the 2026-09-02 ChatGPT/Codex LibreOffice 473 pts + the 2026-09-05 Portal by Spotify Claude Code 218 pts), **`49656225` "Claude is only available to people over 18 years"** (371 pts top+best + 447 cmts, by `Muhammad523` 2026-09-11, https://support.claude.com/en/articles/15171100-age-assurance-on-claude — **Anthropic's age-assurance policy announcement** for Claude; **1.20 cmts-to-upvote ratio** indicates substantive community debate on AI age-verification; **adjacent-not-promoted per scope** because Anthropic is notLine truncated
@@ -185,7 +187,8 @@ Deferred until Robin configures connectors or asks for specific documentation:
- **X / Twitter evidence index** — `/sources/x.md` (no X connector configured yet)
- **Hacker News evidence index** — `/sources/hackernews.md` (active; last refreshed 2026-09-11 18:00 UTC — source-specific LLM-agent topic set (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`); **thirty-second pull since 2026-08-07** — the **6th `fully-zero Algolia lane` pull of the 2026-08-07 streak** (after 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-09-04 + 2026-09-08 — same shape as those five prior pulls); 2 feeds (`top` 30 IDs / 21 resolved + `best` 30 IDs / 7 resolved) → **25 unique top+best items** (3 overlap: `49656225` Claude 18+ + `49649213` OpenAI Agents API + `49658299` Houthis key island); the 6-query lane returned the 6th `fully-zero Algolia lane` pull — `organoid` + `CelVivo` + `3Brain` + `Cellink` + `openwiki` + `deepagents` each returned clean `nbHits=null / hits=0`; the connector completed normally at `fetchedAt: 2026-09-11T18:00:33.613Z` (24-hour window); **the `MiniMax-m3` row on `/themes.md` gets a description refresh** to mention the AI-vendor-business-stack cluster has the **11th entry candidate** (`49649213` OpenAI Agents API at 333 pts top+best + 169 cmts, adjacent-not-promoted per scope); the cluster total stays at **~4,104+ pts across 10 items in 8 pulls over 11 days** (the 11th entry candidate is adjacent-not-promoted per scope); **Last seen stays at 2026-08-03** because the 2026-09-11 pull does not surface any MiniMax-M3 or MiniMax-H3 release; Tavily (web-search) remains the productive lane for vendor news; **named-stack-adjacent items flagged for traceability on this pull**: **`49649213` "OpenAI Agents API"** (333 pts top+best + 169 cmts, by `aquir` 2026-09-10, https://developers.openai.com/api/docs/guides/agents-api/overview — **OpenAI's new Agents API platform launch**; **0.51 cmts-to-upvote ratio**; **adjacent-not-promoted per scope** because OpenAI is closed-weight and not on Robin's named stack — 11th entry candidate in the AI-vendor-business-stack cluster), **`49654229` "Astra for Coding: Why Are We Doing This Again?"** (406 pts best + 311 cmts, by `manojbajaj95` 2026-09-11, https://lucumr.pocoo.org/2026/9/7/astra-why/ — Armin Ronacher's blog post on Astra for Coding + critical reflection on AI-coding-tool proliferation; **adjacent-not-promoted per scope** because Astra is not on Robin's named coding-agent stack — Codex CLI is the named coding-agent — but the **direct cross-walk to the Codex CLI / coding-agent-tooling cluster** is structurally adjacent; **3rd-highest coding-agent-tooling item of the 2026-08-07 streak** after the 2026-09-02 ChatGPT/Codex LibreOffice 473 pts + the 2026-09-05 Portal by Spotify Claude Code 218 pts), **`49656225` "Claude is only available to people over 18 years"** (371 pts top+best + 447 cmts, by `Muhammad523` 2026-09-11, https://support.claude.com/en/articles/15171100-age-assurance-on-claude — Anthropic's age-assurance policy announcement; **1.20 cmts-to-upvote ratio**; **adjacent-not-promoted per scope** because Anthropic is not on Robin's named stack + the entry is a policy change rather than a model release; cross-walks to the closed-weight-M3-comparison-anchor cluster via the Anthropic / M3 closed-weight cross-walk pattern but does not promote the cluster), **`49656496` "The Waymo effect: how AI is quietly making research less collaborative"** (310 pts best + 271 cmts, by `JohnHammersley` 2026-09-11, https://www.researchagenda.news/articles/the-waymo-effect.html — research-news commentary; **off-scope per scope** because the entry is a cultural-research commentary), **`49659245` "HuggingFace: Security.txt"** (161 pts top + 37 cmts, by `yarapavan` 2026-09-11, https://huggingface.co/security.txt — HuggingFace's security disclosure; **adjacent-not-promoted per scope** because HuggingFace is not on Robin's named stack), **`49656471` "RTK reports token savings, but our cost benchmarks disagree"** (112 pts top + 57 cmts, by `michalwarda` 2026-09-11, https://quesma.com/blog/does-rtk-make-ai-coding-cheaper/ — Quesma blog post questioning RTK's AI-coding token-savings numbers; **named-stack-adjacent because Codex CLI is on Robin's named coding-agent stack**; **adjacent-not-promoted per scope** because RTK is not on Robin's named stack + the entry is a critical reflection; **flagged for Tavily followup**), **`49660676` "Show HN: Godot and Rust based multiplexer (terminal panes and more)"** (46 pts top + 26 cmts, by `1nv1n` 2026-09-11, https://github.com/godot-pty/gpty — gPTY project; the submitter text explicitly mentions "orchestrating autonomous AI agents by way of dogfooding"; **adjacent-not-promoted per scope** because engagement (46 pts) is below the 100-pt refresh bar + the entry is a Show HN side-project; the **agent-orchestration framing** in the submitter text is structurally adjacent to the self-hosted-agentic-substrate cluster; **flagged for Tavily followup**), and **`49652270` "OpenAI considers slowing advanced AI development, Sam Altman tells employees"** (27 pts top + 20 cmts, byLine truncated
- **Web search evidence index** — `/sources/web-search.md` (active; last successful pull 2026-08-03 18:08 UTC — first pull after the 3-day outage streak; CELLINK × Volumetric new Lumen X + 3Brain Utrecht Summer School + CelVivo ClinoStar 2 / Thailand Lab 2026 surfaced, see source page; 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, 2026-08-19, 2026-08-20, 2026-08-21, 2026-08-22, 2026-08-23, 2026-08-24, 2026-08-25, 2026-08-27, 2026-08-28, 2026-08-29, 2026-08-30, 2026-08-31, 2026-09-01, 2026-09-02, 2026-09-03, 2026-09-04, 2026-09-05, 2026-09-06, 2026-09-07, 2026-09-08, 2026-09-09, 2026-09-10, and 2026-09-11 update attempts skipped — connector not enabled in runtime registry, `TAVILY_API_KEY` missing; disk config shows `enabled: true` + 6 Chinese queries but the runtime registry disagrees — operational concern, not a wiki-synthesis concern; **twenty-ninth consecutive skip on the same code path** including 2026-09-11)
- **Git repo evidence index** — `/sources/git-repo.md` (active; last refreshed **2026-09-11T18:14Z** — covers Robin's Obsidian vault (HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff` 2026-09-11, **vault HEAD bumped from `391e4713` → `09bec367`** with **2 new vault commits** ending the **11-day vault silence streak**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**, `obsidian-vault/04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md`) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**, `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md`)) + OpenWiki wiki (HEAD `55d930ffbc0a658aa335683f0d412496b32af549` 2026-09-11; the wiki HEAD bumped from `7e2072c` → `55d930f` via **4 automated commits** (`299eeab` sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync + `1e6a7cb` daily update 2026-09-10 + `2bf104e` daily update 2026-09-11 + `55d930f` sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the count-data wipe pattern; per `git show --stat 55d930f` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the working tree carries **10 uncommitted wiki files** (same shape as the 2026-09-10T18:19Z fetch — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) + **1 new untracked `NO` file** (stray test artifact, recorded for traceability only); the 4 carry-forward untracked directories bumped to **30/25/25/18-day** at the 2026-09-11T18:14Z fetch — `Review/zhou2023_computer_vision_microfluidics.md` 29 → **30-day** + `celvivo_commercial/` + `templates/` 24 → **25-day** + `deepread_40240593/` 17 → **18-day**; **the 2026-09-11 18:14 UTC fetch is documented in the "Latest update" section at the top** — see the new "Latest update — git-repo-1 (2026-09-11T18:14Z)" paragraph; the prior 2026-09-09T18:11Z fetch (vault HEAD `391e4713`, **26th** consecutive sources-sync, 10-dirty-file baseline, 9 calendar days vault silence) is also documented at the top under "Latest update — git-repo-1 (2026-09-09T18:11Z"). The 2026-09-10T18:19Z fetch was the last git-repo-1 fetch in the same 24-hour window before this 2026-09-11T18:14Z fetch — that fetch observed **vault HEAD unchanged** at `391e4713` for the **10th consecutive fetch** since the 2026-08-31 THIRD 5-paper CelVivo LDR cluster (**10 calendar days of vault silence**; **0 new vault commits** in the 2026-09-09T18:11Z → 2026-09-10T18:19Z 24-hour window); carry-forward untracked directories bumped to **30/24/24/17-day** at the 2026-09-10T18:19Z fetch; wiki HEAD bumped from `7e2072c` → `299eeab` via 1 automated wiki commit at the 2026-09-10T18:19Z fetch (`299eeab` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync); the working tree carries **10 uncommitted wiki files** at the 2026-09-10T18:19Z fetch (same shape as the 2026-09-09T18:11Z fetch — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`). The 2026-09-11T18:14Z fetch is the **twenty-ninth git-repo-1 fetch of the 2026-08-07 streak**. **Synthesis-layer change at the 2026-09-11T18:14Z fetch**: the **vault-silence-streak-broken** event is substantive (vault produced 2 new external-evidence papers: Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering) — the `class-organoid-3d-bioprinting` row on `/themes.md` gets a description refresh + Last-seen bump 2026-08-25 → 2026-09-11 + Evidence count 37+ → 39+ to reflect the Tomas 2026 + Vijakumaran 2026 entry pair; no `/commitments.md` row + no `/personal-logistics.md` item (the 2 new vault commits are research-output signals, not work-task or life-admin signals). Prior 2026-09-08 daily update `57be545` + 2026-09-08 sources-sync `556d937` (the **twenty-fifth** consecutive sources-sync) bumped wiki HEAD to `556d937` + left 10-dirty-file baseline; the prior 2026-08-31 daily update `c9e2770` (single-connector raw-data refresh combining HN-1 + git-repo-1 + web-search-1 skipped) + 2026-08-31 sources-sync `9582dea` (the **seventeenth** consecutive sources-sync) bumped wiki HEAD to `9582dea` + bumped dirty count to 11; the 2026-08-31 git-repo-1 fetch (vault HEAD bumped `9d4767c7` → `391e4713`, 5 new vault commits, ending the 5-day vault silence) is the THIRD consecutive single-day 5-paper CelVivo LDR burst (Yan + Stewart + Nguyen + Aiello + Miao all at `obsidian-vault/04-LiLine truncated
- **Git repo evidence index** — `/sources/git-repo.md` (active; last refreshed **2026-09-13T18:08Z** — covers Robin's Obsidian vault (HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff` 2026-09-11, vault HEAD **unchanged** at `09bec367` for the **2nd consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11; **0 new vault commits** + **1 working-tree modification** at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800; Robin actively editing MOC index file but NOT yet committed — the first vault working-tree modification since the 2026-08-24/25 burst) + OpenWiki wiki (HEAD `5f33bd3015e3ac6b740702d55888ba93fe024eab` 2026-09-13; the wiki HEAD bumped from `55d930f` → `5f33bd3` via **4 automated commits** in the 2026-09-11 → 2026-09-13 48-hour window (`7cfb801` sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync + `999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 + `5f33bd3` sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync re-applying the count-data wipe pattern; per `git show --stat 5f33bd3` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the working tree carries **8 uncommitted wiki files** (down from the 10-dirty baseline at the 2026-09-11T18:14Z fetch — `M .last-update.json` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md`; the daily-update cycle on 2026-09-12 cleared `index.md` + `quickstart.md` + `sources/git-repo.md` + `themes.md` that the prior metadata cycle had re-touched, and `sources/openwiki-version-drift.md` was newly re-touched in this cycle); the 4 carry-forward untracked directories bumped to **32/27/27/20-day** at the 2026-09-13T18:08Z fetch — `Review/zhou2023_computer_vision_microfluidics.md` 31 → **32-day** + `celvivo_commercial/` + `templates/` 26 → **27-day** + `deepread_40240593/` 19 → **20-day**; **the 2026-09-13 18:08 UTC fetch is documented in the "Latest update" section at the top** — see the new "Latest update — git-repo-1 (2026-09-13T18:08Z)" paragraph; the prior 2026-09-11T18:14Z fetch observed **vault HEAD bumped** from `391e4713` → `09bec367` with **2 new vault commits** ending the **11-day vault silence streak**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**, `obsidian-vault/04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md`) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**, `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md`); the 4 carry-forward untracked directories bumped to **30/25/25/18-day** at the 2026-09-11T18:14Z fetch; wiki HEAD bumped from `7e2072c` → `55d930f` via **4 automated commits** (`299eeab` sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync + `1e6a7cb` daily update 2026-09-10 + `2bf104e` daily update 2026-09-11 + `55d930f` sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync); the working tree carried **10 uncommitted wiki files** at the 2026-09-11T18:14Z fetch. The 2026-09-13T18:08Z fetch is the **thirty-first git-repo-1 fetch of the 2026-08-07 streak**. **Synthesis-layer change at the 2026-09-13T18:08Z fetch**: the vault delta is empty (0 new commits, 1 working-tree modification that is uncommitted) and the wiki delta is automated maintenance only — **no `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item** at this fetch. The 2026-09-11T18:14Z fetch was the previous substantively-updated fetch: the **vault-silence-streak-broken** event refreshed the `class-organoid-3d-bioprinting` row on `/themes.md` with Last-seen bump 2026-08-25 → 2026-09-11 + Evidence count 37+ → 39+ to reflect the Tomas 2026 + Vijakumaran 2026 entry pair (the synthesis layer changed because vault produced 2 new external-evidence papers: Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering) — see the prior paragraph for the full 2026-09-11T18:14Z fetch delta. The 2026-09-12T18:08Z intermediate fetch observed the same state as the 2026-09-11T18:14Z fetch (vault HEAD `09bec367`, 0 new commits, 2 new wiki commits `7cfb801` sources-sync 2026-09-12 twenty-ninth + `999a37d` daily update 2026-09-12). The 2026-08-31 git-repo-1 fetch (vault HEAD bumped `9d4767c7` → `391e4713`, 5 new vault commits, ending the 5-day vault silence) is the THIRD consecutive single-day 5-paper CelVivo LDR burst (Yan + Stewart + Nguyen + Aiello + Miao all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V parallel subfolder — Robin's first parallel-naming deep-read subfolder convention) — see [`/sources/gLine truncated
- **Project / people / company pages** — only created when durable entities emerge from ingested data
These are intentionally blank until there is real evidence to put in them. Populating them with placeholders would dilute the synthesis layer. the synthesis layer.
@@ -206,3 +209,4 @@ These are intentionally blank until there is real evidence to put in them. Popul
**Latest update — git-repo-1 (2026-09-05T18:18Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-09-05T18-18-02-337Z/manifest.json`. **Vault HEAD unchanged** at `391e47131679ce9edf0f525236e78ebb13e0d232` (same as the 2026-09-04T18:12Z + 2026-09-03T18:09Z + 2026-09-02T18:16Z + 2026-09-01T18:07Z + 2026-08-31T18:09Z fetches) — **0 new vault commits** in the 2026-09-04T18:12Z → 2026-09-05T18:18Z 24-hour window; the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR cluster (Yan 2024 + Stewart 2023 + Nguyen 2024 + Aiello 2025 + Miao 2025, all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity. **Vault silent for the 5th consecutive fetch** since the 2026-08-31 cluster, **5 calendar days stale**. **No new vault mtime changes** — the 4 untracked vault directories / files from the 2026-09-04T18:12Z fetch carry forward with bumped carry-forward counts: `Review/zhou2023_computer_vision_microfluidics.md` **24-day → 25-day carry-forward** (**22 → 23 fetches silent**, **one-off interpretation confirmed at 2026-08-28 fetch** per the 2026-08-27 fetch confirmation, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + **2026-09-05** fetches; entry remains a stale / not recurring carry-forward note) + `celvivo_commercial/` + `templates/` **19-day → 20-day carry-forward** (**both confirmed one-off alongside the `Review/` entry at the 2026-08-28 fetch**, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + **2026-09-05** fetches; **19 fetches silent** on each) + `deepread_40240593/` **12-day → 13-day carry-forward** (the directory mtime is still **2026-08-24 16:31 +0800** at the 2026-09-05T18:18Z fetch, mtime unchanged across the 2026-08-25 + 2026-08-26 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + **2026-09-05** fetches — **12 consecutive silent fetches** since the 2026-08-24/25 burst, **13 fetches silent on directory mtime**; working-folder pipeline hypothesis continuing to weaken — the entry should remain a stale / not recurring carry-forward note on the next synthesis pass alongside the other 3 entries). **Wiki HEAD** bumped from `88635edc7a35488280cf4cbf87750f6ac5e517ed` (2026-09-04T18:12Z fetch) to **`0be3b8a3a44194ad947c3b1a14440f3d12d278d3`** (2026-09-05T18:18Z fetch); **2 new automated wiki commits** in the 2026-09-04T18:12Z → 2026-09-05T18:18Z 24-hour window: (a) `ca1acf8` chore: daily update 2026-09-05 (2026-09-05T02:?? +0800; per `git show --stat ca1acf8` the commit touched **16 files** from the prior dirty set including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — reducing uncommitted-file count from 10 → ~5) + (b) `0be3b8a` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-05, 2026-09-05T02:30 +0800 — the **twenty-second** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + `bd30339` 2026-08-20 + `f6c2576` 2026-08-21 + `43d4548` 2026-08-22 + `8f8f767` 2026-08-23 + `127c2dc` 2026-08-24 + `1003b92` 2026-08-25 + `ebb95c0` 2026-08-26 + `502281f` 2026-08-27 + `c992dd6` 2026-08-28 + `37d1ba6` 2026-08-29 + `d56da3a` 2026-08-30 + `9582dea` 2026-08-31 + `0890fdb` 2026-09-01 + `cedbb7f` 2026-09-02 + `58168e7` 2026-09-03 + `88635ed` 2026-09-04 + now `0be3b8a` 2026-09-05; per `git show --stat 0be3b8a` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files that the `ca1acf8` daily update had cleared were re-touched by the sources-sync that landed later in the window). **11 uncommitted wiki files** in working tree per the manifest `changedFiles` list at this fetch (`M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) — **1 more than the 2026-09-04T18:12Z fetch's 10-dirty-file baseline** because the `ca1acf8` daily update cycle on 2026-09-05 re-touched `sources/index.md` (the 2026-09-04 daily update had not) and the `0be3b8a` Line truncated
**Latest update — git-repo-1 (2026-09-04T18:12Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-09-04T18-12-59-869Z/manifest.json`. **Vault HEAD unchanged** at `391e47131679ce9edf0f525236e78ebb13e0d232` (same as the 2026-09-03T18:09Z + 2026-09-02T18:16Z + 2026-09-01T18:07Z + 2026-08-31T18:09Z fetches) — **0 new vault commits** in the 2026-09-03T18:09Z → 2026-09-04T18:12Z 24-hour window; the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR cluster (Yan 2024 + Stewart 2023 + Nguyen 2024 + Aiello 2025 + Miao 2025, all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity. **Vault silent for the 4th consecutive fetch** since the 2026-08-31 cluster, **4 calendar days stale**. **No new vault mtime changes** — the 4 untracked vault directories / files from the 2026-09-03T18:09Z fetch carry forward with bumped carry-forward counts: `Review/zhou2023_computer_vision_microfluidics.md` **23-day → 24-day carry-forward** (**21 → 22 fetches silent**, **one-off interpretation confirmed at 2026-08-28 fetch** per the 2026-08-27 fetch confirmation, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + **2026-09-04** fetches; entry remains a stale / not recurring carry-forward note) + `celvivo_commercial/` + `templates/` **18-day → 19-day carry-forward** (**both confirmed one-off alongside the `Review/` entry at the 2026-08-28 fetch**, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + **2026-09-04** fetches; **18 fetches silent** on each) + `deepread_40240593/` **11-day → 12-day carry-forward** (the directory mtime is still **2026-08-24 16:31 +0800** at the 2026-09-04T18:12Z fetch, mtime unchanged across the 2026-08-25 + 2026-08-26 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + **2026-09-04** fetches — **11 consecutive silent fetches** since the 2026-08-24/25 burst, **12 fetches silent on directory mtime**; working-folder pipeline hypothesis continuing to weaken — the entry should remain a stale / not recurring carry-forward note on the next synthesis pass alongside the other 3 entries). **Wiki HEAD** bumped from `58168e7a4c10b5e29c76e7dad5544878c3a9132b` (2026-09-03T18:09Z fetch) to **`88635edc7a35488280cf4cbf87750f6ac5e517ed`** (2026-09-04T18:12Z fetch); **2 new automated wiki commits** in the 2026-09-03T18:09Z → 2026-09-04T18:12Z 24-hour window: (a) `ab49afd` chore: daily update 2026-09-04 (2026-09-04T02:?? +0800; per `git show --stat ab49afd` the commit touched **14 files** from the prior dirty set including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` — reducing uncommitted-file count from 11 → ~5) + (b) `88635ed` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-04, 2026-09-04T02:30 +0800 — the **twenty-first** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + `bd30339` 2026-08-20 + `f6c2576` 2026-08-21 + `43d4548` 2026-08-22 + `8f8f767` 2026-08-23 + `127c2dc` 2026-08-24 + `1003b92` 2026-08-25 + `ebb95c0` 2026-08-26 + `502281f` 2026-08-27 + `c992dd6` 2026-08-28 + `37d1ba6` 2026-08-29 + `d56da3a` 2026-08-30 + `9582dea` 2026-08-31 + `0890fdb` 2026-09-01 + `cedbb7f` 2026-09-02 + `58168e7` 2026-09-03 + now `88635ed` 2026-09-04; per `git show --stat 88635ed` the commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files that the `ab49afd` daily update had cleared were re-touched by the sources-sync that landed later in the window). **10 uncommitted wiki files** in working tree per the manifest `changedFiles` list at this fetch (`M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) — **1 fewer than the 2026-09-03T18:09Z fetch's 11-dirty-file baseline** because the `88635ed` sources-sync re-touched only 4 source-sync files net while the `ab49afd` daily update cleared more of the prior 11-dirty set than the sources-sync re-touched; the CLI metadata cycle re-touched `themes.md` + `.last-update.json` + `index.md` + `qLine truncated
moted to stale / not recurring carry-forward notes per the 2026-08-28 demotion, and the entries should remain demoted rather than promoted back to active watchlist status. Prior run was **git-repo-1 (2026-09-03T18:09Z)** — see the prior paragraph.