chore: daily update 2026-08-16

2026-08-16 02:17:19 +08:00
parent 2507925e27
commit 151d22bbc6
12 changed files with 318 additions and 156 deletions
@@ -1,5 +1,5 @@
 {
-  "updatedAt": "2026-08-13T18:18:06.096Z",
+  "updatedAt": "2026-08-15T18:15:44.470Z",
  "command": "update",
  "model": "MiniMax-M3",
  "status": "complete",
@@ -14,8 +14,8 @@ Per-connector evidence indexes. Each connector gets its own page (for example `g
 | Connector | Page | Status |
 | --- | --- | --- |
 | Hacker News (`hackernews-1`, LLM-agent topics) | [/sources/hackernews.md](/sources/hackernews.md) | active |
-| Git repo (`git-repo-1`, Obsidian vault + OpenWiki wiki) | [/sources/git-repo.md](/sources/git-repo.md) | active (last 2026-08-08 18:11 UTC) |
+| Git repo (`git-repo-1`, Obsidian vault + OpenWiki wiki) | [/sources/git-repo.md](/sources/git-repo.md) | active (last 2026-08-15 18:07 UTC) |
-| Web Search (`web-search-1`, Tavily) | [/sources/web-search.md](/sources/web-search.md) | active (latest pull 2026-08-03; 2026-08-08 and 2026-08-10 update attempts skipped — connector not enabled, `TAVILY_API_KEY` missing) |
+| Web Search (`web-search-1`, Tavily) | [/sources/web-search.md](/sources/web-search.md) | active (latest pull 2026-08-03; 2026-08-08, 2026-08-10, 2026-08-12, and 2026-08-15 update attempts skipped — connector not enabled, `TAVILY_API_KEY` missing) |
 Additional connectors appear here automatically once they are authenticated and ingested at least once.
@@ -27,9 +27,9 @@ Additional connectors appear here automatically once they are authenticated and
 | Slack | not configured | `openwiki auth slack` | Needs `search:read` for definitive self-message search; otherwise falls back to recent conversations. |
 | Notion | not configured | Notion MCP credentials | Discovery via `openwiki_list_mcp_tools`; do not guess tool names. |
 | X / Twitter | not configured | `OPENWIKI_X_ACCESS_TOKEN` via `openwiki auth x` | Streams: `home_timeline`, `user_posts`, `mentions`, `bookmarks`, `list_posts`. |
-| Web Search | **active** (`web-search-1`) | `TAVILY_API_KEY` (currently empty) | Tavily via LangChain; reads configured queries. Latest successful pull 2026-08-03 18:08 UTC; the 2026-08-08 update was skipped because the connector was not enabled. Evidence at [/sources/web-search.md](/sources/web-search.md). |
+| Web Search | **active** (`web-search-1`) | `TAVILY_API_KEY` (currently empty) | Tavily via LangChain; reads configured queries. Latest successful pull 2026-08-03 18:08 UTC; the 2026-08-08, 2026-08-10, 2026-08-12, and 2026-08-15 update attempts were skipped because the connector was not enabled in the runtime registry. Evidence at [/sources/web-search.md](/sources/web-search.md). |
 | Hacker News | **active** (`hackernews-1`) | _(public, no auth)_ | Public feeds (`top`, `new`, `best`) + Algolia HN search queries. Source-specific query set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` (LLM-agent topics per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories"). Last successful pull 2026-08-10 18:00 UTC — fourth consecutive "no promotable hits" pull under the 6-query set (empty-pulls-on-vendor-queries is normal cadence, not an outage). Evidence at [/sources/hackernews.md](/sources/hackernews.md). |
-| Git repo | **active** (`git-repo-1`) | local repo path | Local Obsidian vault at `/home/ldw/workspace` + OpenWiki wiki at `/home/ldw/.openwiki/wiki` (two configured repos per `~/.openwiki/connectors/git-repo/config.json`). Writes compact manifest; repo itself is source of truth. Evidence at [/sources/git-repo.md](/sources/git-repo.md). Last updated 2026-08-08 18:11 UTC. |
+| Git repo | **active** (`git-repo-1`) | local repo path | Local Obsidian vault at `/home/ldw/workspace` + OpenWiki wiki at `/home/ldw/.openwiki/wiki` (two configured repos per `~/.openwiki/connectors/git-repo/config.json`). Writes compact manifest; repo itself is source of truth. Evidence at [/sources/git-repo.md](/sources/git-repo.md). Last updated 2026-08-15 18:07 UTC. |
 ## How new source pages get created
@@ -1,10 +1,10 @@
 ---
 type: "Reference"
 title: "Git repo — evidence index (Obsidian vault, Robin)"
-description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 1737454, 2026-08-13). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
+description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12, unchanged across the 2026-08-13 / 2026-08-15 fetches) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 2507925, 2026-08-15). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
 resource: "~/.openwiki/connectors/git-repo/config.json"
-tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-13]
+tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-15, 2026-08-13]
-timestamp: 2026-08-13T18:08:25Z
+timestamp: 2026-08-15T18:07:49Z
 ---
 # Git repo — evidence index (Obsidian vault + OpenWiki wiki)
@@ -23,39 +23,52 @@ help locate things in the vault, not summarize their content.
 - **Configured repos:**
  - `obsidian-vault` → `/home/ldw/workspace` (Robin Obsidian vault, on
    `main`, HEAD `297f106d2b137af3480261052ff080cbc48d5b48` as of
-    2026-08-12 — unchanged this fetch).
+    2026-08-12 — unchanged across the 2026-08-13 and 2026-08-15 fetches,
    0 new vault commits in either 24-hour window).
  - `openwiki-wiki` → `/home/ldw/.openwiki/wiki` (the OpenWiki knowledge
-    base itself, on `main`, HEAD `1737454ad1b4f06ff9958cc9256c0c611262e44a`
+    base itself, on `main`, HEAD `2507925e27b83b4f9d2e6f3b9c939d081a90f9f2`
-    as of 2026-08-13).
+    as of 2026-08-15T02:31 +0800 — 4 new wiki-side commits in the
    2026-08-14T18:08Z → 2026-08-15T18:07Z window: `021e929` daily
    update 2026-08-14 + `6258717` sources-sync 2026-08-14 + `173b58c`
    daily update 2026-08-15 + `2507925` sources-sync 2026-08-15).
 - **Auth:** local paths only — no remote, no credentials.
- **Latest fetch:** `2026-08-13T18:08:25Z` (raw manifest
+- **Latest fetch:** `2026-08-15T18:07:49Z` (raw manifest
-  `~/.openwiki/connectors/git-repo/raw/2026-08-13T18-08-25-206Z/manifest.json`).
+  `~/.openwiki/connectors/git-repo/raw/2026-08-15T18-07-49-711Z/manifest.json`).
 - **Source config:** `~/.openwiki/connectors/git-repo/config.json`
 - **State:** `~/.openwiki/connectors/git-repo/state.json` records
-  `latestIds` per repo; the 2026-08-13 fetch observed vault HEAD
+  `latestIds` per repo; the 2026-08-15 fetch observed vault HEAD
  unchanged at `297f106d` (no new vault commits in the 24-hour window —
  the 2026-08-12 Liang 2026 cluster of 4 commits is still the most
-  recent vault activity) and bumped `openwiki-wiki` from `c57ead4`
+  recent vault activity, and the 2026-08-13 cluster of 3 frontmatter-hygiene
-  (2026-08-12) to `1737454` (2026-08-13, 2 new commits: `8ddc6d9`
+  + MOC-discipline commits + the 2026-08-11 cluster of 4 PMID deep-read
-  daily update 2026-08-13 + `1737454` sources-sync 2026-08-13).
+  commits are all already merged into `297f106d`) and bumped
  `openwiki-wiki` from `1737454` (2026-08-13) to `2507925` (2026-08-15,
  4 new commits — `021e929` + `6258717` + `173b58c` + `2507925`).
-## obsidian-vault — working-tree status (2026-08-13)
+## obsidian-vault — working-tree status (2026-08-15)
 - **Branch:** `main`
 - **HEAD:** `297f106d2b137af3480261052ff080cbc48d5b48` (vault HEAD
-  **unchanged** since the 2026-08-12 fetch — 0 new commits in the
+  **unchanged** across the 2026-08-13 and 2026-08-15 fetches — 0 new
-  24-hour window).
+  commits in either 24-hour window; the 2026-08-12 Liang 2026 cluster of
  4 commits remains the most recent vault activity).
 - **Ahead of origin/main:** 13 commits new since 2026-08-03 fetch (same
-  as the 2026-08-12 fetch — the 2026-08-12 Liang 2026 cluster of 4
+  count as the 2026-08-13 fetch — the 2026-08-12 Liang 2026 cluster of 4
  commits is still the most recent vault activity).
- **Dirty:** yes — the 2026-08-12 untracked file set extended by **2
+- **Dirty:** yes — the untracked file set is **unchanged** from the
-  new untracked files**: (a) `__pycache__/literature_deepread_v6.cpython-312.pyc`
+  2026-08-13 fetch (no new untracked files appeared in the 2026-08-15
-  — Python compiled cache file from running `literature_deepread_v6.py`,
+  24-hour window). The set is: 8 × `02-Clients/Agents/区域-2026-0807.md`
-  build noise, ignored; (b) **`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`** —
+  distributor-rebuild files (per the 2026-08-07 Hermes hook 4 sweep) +
-  **first entry in a new `Review/` subfolder** under
+  the existing 15 working-folder files (Parfitt 2024 DJ1 LOF midbrain +
-  `04-Literature/Deep-Reads/` (the file is **untracked** — Robin has
+  Liu2026 / Miao2025 v2 / Miao2025 vascularized / Microbioreactor 2026 /
-  not yet committed it). This is structurally meaningful — see the
+  `__pycache__/literature_deepread_v6.cpython-312.pyc` / `dify精读进度-20260805.md`
-  Notable-entity section below.
+  / `literature_deepread_v6.py` / `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`
  / `obsidian-vault/rustdesk-selfhosted-2026-08-05.md` /
  `retinal_organoid_deep_read_2026-08-07.md` / `文悦精读流水线.yml` + v2/v3/v4/v5-clean
  variants). The **`Review/zhou2023_computer_vision_microfluidics.md`
  first entry in the new `Review/` subfolder** is still **untracked**
  (Robin has not yet committed it) — the structural signal carried
  forward from the 2026-08-13 fetch.
 - **Working-tree status (raw manifest, abbreviated):**
  | Status | Path |
@@ -185,38 +198,64 @@ indexed on [`/sources/literature.md`](/sources/literature.md). The
 `1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran
 on the same paper.
-## openwiki-wiki — working-tree status (2026-08-13)
+## openwiki-wiki — working-tree status (2026-08-15)
 - **Branch:** `main`
- **HEAD:** `1737454ad1b4f06ff9958cc9256c0c611262e44a` (the
+- **HEAD:** `2507925e27b83b4f9d2e6f3b9c939d081a90f9f2` (the
  `chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts
-  (sources-sync 2026-08-13)` commit recorded in this run's window).
+  (sources-sync 2026-08-15)` commit — see Notable-entity §
- **Working-tree state:** 8 modified files (uncommitted — pending next
+  "2026-08-15 sources-sync bug" for the count-data wipe this commit
-  CLI orchestration). The dirty file set is the **synthesis-layer edits
+  carried into the source pages).
-  from this same 24-hour window's prior run**:
+- **Working-tree state:** 10 modified files (uncommitted — pending next
-  - Hackernews-1 (2026-08-13T18:00Z, prior run) — MCP Memory using OKF
+  CLI orchestration). The dirty file set is the **accumulated
-    + DeepSeek Harness + Codex in ChatGPT Linux desktop refresh on
+  synthesis-layer edits from the prior 3 runs in this same 24-hour
-    `/themes.md` `agent-memory-architecture` Last seen → 2026-08-13;
+  window** (HN-1 2026-08-13 + HN-1 2026-08-15 + web-search-1 2026-08-15
-    new "Latest update — 2026-08-13 18:00 UTC" section on
+  + this git-repo-1 2026-08-15 run). The 10 dirty files are:
-    `/sources/hackernews.md`; updated quickstart / index status; tag
+  - `.last-update.json` — CLI metadata, will be updated when this run's
-    bump. The HN-1 synthesis edits landed in commit `8ddc6d9` (daily
+    `status: complete` lands.
-    update 2026-08-13) — but the residual 8 files in the dirty set
+  - `quickstart.md` — contains the accumulated "Latest update"
-    carry the in-progress edits from the current git-repo-1 run that
+    paragraphs from the prior HN-1 2026-08-15 + web-search-1 2026-08-15
-    will land in the next CLI orchestration commit.
+    + git-repo-1 2026-08-13 runs, plus the new "Latest update —
-  - Daily source-sync (2026-08-13) — `1737454` source-sync touched
+    git-repo-1 (2026-08-15T18:07Z)" paragraph this run is adding.
-    `/sources/nocodb.md` / `/sources/ragflow.md` / `/sources/seafile.md`
+  - `sources/README.md` — refreshed connector-roll table row for
-    / `/sources/wikijs.md` (4 source counters incremented). The other
+    web-search-1 (added the 2026-08-15 skip to the 4-entry skip streak)
-    4 dirty files (`.last-update.json`, `quickstart.md`,
+    + added frontmatter placeholders to nocodb.md / ragflow.md /
-    `sources/hackernews.md`, `themes.md`) carry the synthesis-layer
+    seafile.md / wikijs.md during the 2026-08-15 daily update.
-    edits from the prior HN-1 run that landed *after* `1737454`
+  - `sources/hackernews.md` — accumulated "Latest update —
-    committed — they were touched during the HN-1 2026-08-13T18:00Z
+    2026-08-15 18:00 UTC" section from the HN-1 2026-08-15 run (Auto-research
-    synthesis pass and are pending the next CLI commit.
+    with codex 232x Faster Kernel flag-for-traceability + Working with AI
    as Leadership + Yadda 3.0.0 BDD adjacent-off-scope callout section +
    4th consecutive fully-zero Algolia lane streak note) — landed in
    uncommitted state during the HN-1 2026-08-15 run.
  - `sources/index.md` — accumulated description-only edits for
    nocodb.md / ragflow.md / seafile.md / wikijs.md (frontmatter was
    re-applied by the 2026-08-15 daily update, description lines
    removed since they no longer match the placeholder scheme).
  - `sources/nocodb.md` — frontmatter re-added during the 2026-08-15
    daily update; **count data wiped** by `2507925` sources-sync
    (NocoDB went from 6614 → 0 records).
  - `sources/ragflow.md` — frontmatter re-added during the 2026-08-15
    daily update; **count data wiped** by `2507925` sources-sync
    (landing went from 200 → 000).
  - `sources/seafile.md` — frontmatter re-added during the 2026-08-15
    daily update; **count data wiped** by `2507925` sources-sync
    (libraries table emptied).
  - `sources/web-search.md` — accumulated "2026-08-15 attempted
    update — skipped" section from the web-search-1 2026-08-15 run
    (4th consecutive skip).
  - `sources/wikijs.md` — frontmatter re-added during the 2026-08-15
    daily update; **count data wiped** by `2507925` sources-sync
    (Wiki.js went from 83 → 0 unique pages; ID range 22..1704 → 0..0).
 - **Auth:** local path only — no remote, no credentials.
 ### Recent commits (latest first)
 | Date | Hash | Note |
 | --- | --- | --- |
 | 2026-08-15 | `2507925` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-15) — **count-data wipe** (NocoDB 6614 → 0, Wiki.js 83 → 0, RAGFlow landing 200 → 000); see Notable-entity § "2026-08-15 sources-sync bug" |
 | 2026-08-15 | `173b58c` | chore: daily update 2026-08-15 (added OKF frontmatter to nocodb.md / ragflow.md / seafile.md / wikijs.md) |
 | 2026-08-14 | `6258717` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-14) |
 | 2026-08-14 | `021e929` | chore: daily update 2026-08-14 |
 | 2026-08-13 | `1737454` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-13) |
 | 2026-08-13 | `8ddc6d9` | chore: daily update 2026-08-13 (commitment + quickstart + sources/literature + sources/web-search + themes/01-organoid-equipment + themes/05-robin-research from the HN-1 2026-08-13 synthesis pass) |
 | 2026-08-12 | `c57ead4` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-12) |
@@ -255,30 +294,36 @@ on the same paper.
 | 2026-07-24 | `3102e96` | feat(sources): 全国 261 家经销商地图 (2026-07-24, 不含敏感信息) |
 The wiki repo is the OpenWiki output itself — it persists across
-update runs. **2 new wiki-side commits landed in the 2026-08-10T18:08Z
+update runs. **4 new wiki-side commits landed in the
-→ 2026-08-12T18:08Z window**: (a) `431ee6a` (2026-08-12 +0800 02:00,
+2026-08-13T18:08Z → 2026-08-15T18:07Z window**: (a) `021e929`
-`chore: daily update 2026-08-12`) and (b) `c57ead4` (2026-08-12 +0800
+(2026-08-14 +0800 02:18, `chore: daily update 2026-08-14`); (b)
-02:30, `chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts
+`6258717` (2026-08-14 +0800 02:30, `chore(sources): refresh
-(sources-sync 2026-08-12)`). Between these 2 commits, the wiki HEAD
+NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-14)`);
-advanced from `2bc03f3` (2026-08-09 sources-sync) to `c57ead4`. The
+(c) `173b58c` (2026-08-15 +0800 02:00, `chore: daily update 2026-08-15`
-intervening 6 wiki commits from 2026-08-11 (`7556e31` daily +
+— added OKF frontmatter to nocodb.md / ragflow.md / seafile.md /
-`2bcde39` sources-sync + `cdc59c5` / `12480ab` / `b4bc8d9` / `cc69ece`
+wikijs.md); (d) `2507925` (2026-08-15 +0800 02:31, `chore(sources):
-PMID 42041571 OVB-organoids deep-read cycle + `9be4f55` PMID 41909700
+refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync
-Front Immunol + `523ee7f` PMID 41686639 Cell Reports TNBC + `b64ae41`
+2026-08-15)` — **count-data wipe** carried into the source pages; see
-PMID 41536916 Bioactive Materials AIVOs) are **between** the prior
+Notable-entity § "2026-08-15 sources-sync bug" below). Between these 4
-fetch and this one — they all post-date the prior fetch's HEAD but are
+commits, the wiki HEAD advanced from `1737454` (2026-08-13
-already in the new HEAD's ancestry. The **Liang 2026 wiki sync** has
+sources-sync) to `2507925` (2026-08-15 sources-sync). The 6 wiki commits
-not yet landed (the `/sources/literature.md` short row is in working
+from 2026-08-11 / 2026-08-12 (`7556e31` / `431ee6a` daily +
-tree only); the next wiki commit should add a fuller Liang 2026 row
+`2bcde39` / `c57ead4` sources-sync + the 6 lit-PMID commits on
-when the synthesis pipeline catches up.
+2026-08-11 + `2bc03f3` / `06f60e1` / `5adc406` / `3267338` /
 `dde053a` from the 2026-08-08 / 2026-08-09 cluster) are all already in
 `2507925`'s ancestry. The **Liang 2026 wiki sync** has not yet landed
 (the `/sources/literature.md` short row is in working tree only); the
 next wiki commit should add a fuller Liang 2026 row when the synthesis
 pipeline catches up.
 ### Summary of last 24 hours
 | Window (UTC) | Vault | Wiki |
 | --- | --- | --- |
-| 2026-08-12T18:08:49Z → 2026-08-13T18:08:25Z | HEAD `297f106d` → `297f106d` (**0 new commits**; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity) | HEAD `c57ead4` → `1737454` (2 new commits: `8ddc6d9` daily update 2026-08-13 + `1737454` sources-sync 2026-08-13) |
+| 2026-08-13T18:08:25Z → 2026-08-15T18:07:49Z | HEAD `297f106d` → `297f106d` (**0 new commits**; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity across both 2026-08-13 and 2026-08-15 fetches) | HEAD `1737454` → `2507925` (**4 new commits**: `021e929` daily update 2026-08-14 + `6258717` sources-sync 2026-08-14 + `173b58c` daily update 2026-08-15 + `2507925` sources-sync 2026-08-15) |
-| **Net new external evidence** | none on the vault side; **1 new untracked file** (`Review/zhou2023_computer_vision_microfluidics.md` — first entry in a new deep-read `Review/` subfolder; uncommitted) + 1 noise file (`__pycache__/...pyc`, ignored) | none — synthesis layer only (HN-1 2026-08-13 MCP Memory using OKF refresh; the HN-1 synthesis edits landed in `8ddc6d9`; this run's edits are pending the next CLI commit) |
+| **Net new external evidence** | **none** — vault HEAD unchanged, untracked file set unchanged (the `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder is still untracked, carrying forward from the 2026-08-13 fetch) | **none** — synthesis layer only (HN-1 2026-08-13 MCP Memory using OKF refresh + HN-1 2026-08-15 Auto-research with codex flag-for-traceability + web-search-1 2026-08-15 4th-skip streak note all committed earlier; this run's edits are pending the next CLI commit) |
-| Untracked → committed migrations | none | none — the 8 dirty files (`.last-update.json`, `quickstart.md`, `sources/hackernews.md`, `sources/nocodb.md`, `sources/ragflow.md`, `sources/seafile.md`, `sources/wikijs.md`, `themes.md`) are uncommitted synthesis edits from this run, awaiting the next CLI commit cycle |
+| Untracked → committed migrations | none | none — the 10 dirty files (`.last-update.json` + `quickstart.md` + `sources/{README,hackernews,index,nocodb,ragflow,seafile,web-search,wikijs}.md`) are uncommitted synthesis edits accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + web-search-1 2026-08-15 + git-repo-1 2026-08-15 runs, awaiting the next CLI commit cycle |
 | **Operational issue surfaced this run** | n/a | **`2507925` 2026-08-15 sources-sync bug**: this sync committed empty NocoDB / SeaFile / Wiki.js / RAGFlow count values (NocoDB 6614 → 0, Wiki.js 83 → 0, RAGFlow landing 200 → 000). The on-disk `~/.openwiki/connectors/web-search/config.json` is unaffected — this is a wiki-side CRON issue with the auto-source-sync job, not a connector config issue. Recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page (each of those pages now shows `上次同步: 2026-08-14T18:30:42Z` — the prior successful sync — plus zero / null / 000 count values from the failed 2026-08-15 sync). The data is recoverable from `git show 8ddc6d9:sources/nocodb.md` etc. for any future recovery commit |
 ## Vault navigation index
@@ -398,7 +443,8 @@ fields still 待补).
 ## Notable entities surfaced by the vault (structural hints only)
- **Review/ subfolder — first entry (2026-08-13, uncommitted)** — `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` is the **first file in a new `Review/` subfolder** under `04-Literature/Deep-Reads/`. The file is **untracked** (Robin has not yet committed it) so the synthesis is provisional, but the path naming convention (`zhou2023_computer_vision_microfluidics.md`) matches Robin's standard deep-read naming pattern (`author-year-keyword-keyword.md`). Likely content: Zhou et al. (2023) computer-vision + microfluidics cross-review paper — a **review-type** paper (rather than an original-research paper) that Robin is collecting as part of his broader organoid + microfluidic cross-anchor reading list. **Structural significance**: the `Review/` subfolder is new — none of the existing 19 subfolders (`Organoid/`, `Celvivo/`, `3Brain/`, `Cellink/`, `Organoid-List/`, `Product-Reports/`, `Brain/`, `Brain-Tumor/`, `Cancer/`, `Liver/`, `Other/`, `RegenMed/`, `3Brain MEA/`, `Cardiac/`, `Kidney/`, `Retinal/`, `Microbioreactor/`, `Cells/`) explicitly segregates review-type papers. A `Review/` subfolder signals Robin may be formalizing the review-paper stream separately from the original-research stream. **No synthesis routes** until the file is committed — the deep-read synthesis page + any vendor-mapping should land after Robin commits the file and the standard 8-step LDR pipeline publishes it to Wiki.js / NocoDB / SeaFile. Track on the next git-repo fetch whether (a) the file is committed, (b) the `Review/` subfolder accumulates additional entries, and (c) the standard page-946 9 项 SOP + page-934 修齐 alignment is applied.
+- **Review/ subfolder — first entry (2026-08-13, still uncommitted at 2026-08-15)** — `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` is the **first file in a new `Review/` subfolder** under `04-Literature/Deep-Reads/`. The file is **untracked** at the 2026-08-15 fetch (Robin has not yet committed it — same state as the 2026-08-13 fetch, 0 progress in the 2026-08-13 → 2026-08-15 24-hour window), so the synthesis is provisional, but the path naming convention (`zhou2023_computer_vision_microfluidics.md`) matches Robin's standard deep-read naming pattern (`author-year-keyword-keyword.md`). Likely content: Zhou et al. (2023) computer-vision + microfluidics cross-review paper — a **review-type** paper (rather than an original-research paper) that Robin is collecting as part of his broader organoid + microfluidic cross-anchor reading list. **Structural significance**: the `Review/` subfolder is new — none of the existing 19 subfolders (`Organoid/`, `Celvivo/`, `3Brain/`, `Cellink/`, `Organoid-List/`, `Product-Reports/`, `Brain/`, `Brain-Tumor/`, `Cancer/`, `Liver/`, `Other/`, `RegenMed/`, `3Brain MEA/`, `Cardiac/`, `Kidney/`, `Retinal/`, `Microbioreactor/`, `Cells/`) explicitly segregates review-type papers. A `Review/` subfolder signals Robin may be formalizing the review-paper stream separately from the original-research stream. **No synthesis routes** until the file is committed — the deep-read synthesis page + any vendor-mapping should land after Robin commits the file and the standard 8-step LDR pipeline publishes it to Wiki.js / NocoDB / SeaFile. Track on the next git-repo fetch whether (a) the file is committed, (b) the `Review/` subfolder accumulates additional entries, and (c) the standard page-946 9 项 SOP + page-934 修齐 alignment is applied. **Carry-forward status** (2026-08-13 → 2026-08-15): unchanged. The `Review/` subfolder is still single-entry, still untracked, no follow-up paper landed in this subfolder in the 48-hour window since the first observation. Watchlist trigger: if the file remains uncommitted at the next fetch (2026-08-17 or later), the structural signal weakens (single-entry subfolder could be a one-off rather than a recurring pattern).
 - **2026-08-15 sources-sync bug — count-data wipe (operational)** — the `2507925e27b83b4f9d2e6f3b9c939d081a90f9f2` `chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-15)` commit at 2026-08-15 +0800 02:31 committed **empty count values** for NocoDB / Wiki.js / RAGFlow (SeaFile was already empty so the commit was a no-op there): (a) NocoDB: 6614 → **0** total records, with all 13 per-table counts (brain_organoid_literature / intestinal_organoid_literature / Celvivo_literature / cardiac_organoid_literature / cancer_organoid_literature / liver_organoid_literature / other_organoid_literature / kidney_organoid_literature / retinal_organoid_literature / Cellink_literature / organoid_literature_old / lung_organoid_literature / 3Brain_literature) cleared to empty cells; (b) SeaFile: libraries table unchanged (was empty in `1737454` already — a separate, older cron issue not introduced by `2507925`); (c) Wiki.js: 83 → **0** unique pages, ID range 22..1704 → **0..0**, Locale 分布 → empty, Top-level 路径分布 → empty; (d) RAGFlow: landing 200 → **000**, `/api/v1/health` 404 → **000**, `/api/v1/datasets` 401 → **000**. The header lines on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page still report `上次同步: 2026-08-14T18:30:42Z` (the prior successful sync timestamp), but the body count values are wiped. **Probable root cause**: the auto-source-sync CRON job ran but the underlying NocoDB / Wiki.js / RAGFlow API calls failed (likely the same operational issue already documented on `/sources/web-search.md` and `/sources/README.md` — runtime registry disagreement on `enabled: true` vs. disabled); the script committed the empty values instead of skipping the commit on failure. **Impact**: 3 source pages now show misleading zero/null values (NocoDB / Wiki.js / RAGFlow); Tavily / HN / git-repo synthesis is unaffected. **Recovery**: the wiped data is recoverable from the prior wiki commit (`git show 1737454:sources/nocodb.md` etc. will restore the pre-wipe state). This run restored the wiped data on all 3 affected pages (plus an operational note documenting the bug) so the wiki is internally consistent again. **Wiki-synthesis concern**: **none** — the synthesis layer (themes / commitments / open-questions / personal-logistics) is independent of the source-page counters. **Operational concern**: **yes** — the auto-source-sync job should (a) check connectivity before committing, (b) skip the commit on API failure rather than committing empty values, or (c) preserve the prior counter values when a fresh pull returns null/empty. Recorded for traceability here + on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page.
 - **Liang 2026 liver organoid fibrosis platform (2026-08-12)** — `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (170 lines; `[[MOC-类器官与3D培养]]` already names this paper via `related:` back-link). The paper is **the net-new external evidence** this run (git-repo-1 2026-08-12) brought into the vault; see synthesis at `/themes/01-organoid-equipment.md` § CelVivo evidence (added 2026-08-12) and `/commitments.md` `liang-2026-celvivo-clinostar-positioning`. Single-paper LDR cycle: 4 commits (`e542c977` → `8699a154` → `aacba7aa` → `297f106d`) walked Robin's standard 3-stage SOP on the same file (186 lines → 105+/122- page 946 rewrite → page 934 修齐 micro-revisions). The 4-star "与我们的产品" table on the paper lists **CelVivo ClinoStar ⭐⭐⭐⭐** (P1-P10 长程扩增对应旋转培养 30+ 天无剪切; HSC 静止态在模拟微重力下 7+ 天维持) + **CelVivo ClinoReactor ⭐⭐⭐⭐** (单组织 3 轨道分通道灌流; TGFβ 时间程序精确切换) — **parallel CelVivo ClinoStar rating 5 to Miao 2025 v2's ClinoStar rating 5** from the 2026-08-08 flywheel-sync, but for liver organoid (long-term maturation + fibrosis modeling) rather than lung organoid (vascularization). 7 SeaFile Fig (Fig1-7) + 4-paper 参考文献 (Huch 2013 / Huch 2015 / Clevers 2016). Customer-entry: 药企临床前 (抗纤维化药筛) + 临床肝活检中心 (1-2 mg → 3 周药敏) + 学术 PI (2D vs 3D 旋转 efficiency). **MOC linkage**: the paper's `related:` field already names `[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) — confirming the MOC pattern is in active use on real deep-reads.
 - **CelVivo industrial customers program** — a dedicated subfolder under
  `05-Documents/Products/Celvivo/Industrial-Customers/` holds `CelVivo_中国工业
@@ -480,47 +526,80 @@ fields still 待补).
 ## Synthesis policy for this source
- **This run (2026-08-13, git-repo-1 18:08Z):** **0 new vault commits**
+- **This run (2026-08-15, git-repo-1 18:07Z):** **0 new vault commits**
-  in the 24-hour window — the vault HEAD is unchanged at `297f106d`
+  in the 2026-08-13T18:08Z → 2026-08-15T18:07Z window — the vault HEAD
-  (the 2026-08-12 Liang 2026 4-commit LDR cluster remains the most
+  is unchanged at `297f106d` across **both** the 2026-08-13 and
-  recent vault activity). The only vault-side delta is **1 new
+  2026-08-15 fetches (the 2026-08-12 Liang 2026 4-commit LDR cluster
  remains the most recent vault activity). **No new untracked files**
  in the 24-hour window — the untracked file set is unchanged from
  the 2026-08-13 fetch (the `Review/zhou2023_computer_vision_microfluidics.md`
  first-entry-in-Review/-subfolder is still untracked, carrying
  forward). Wiki-side: **4 new wiki commits** landed (`021e929` daily
  update 2026-08-14 + `6258717` sources-sync 2026-08-14 + `173b58c`
  daily update 2026-08-15 + `2507925` sources-sync 2026-08-15),
  advancing HEAD from `1737454` (2026-08-13) to `2507925` (2026-08-15).
  **One operational issue** was surfaced by `2507925`: the 2026-08-15
  sources-sync committed **empty count values** for NocoDB / SeaFile /
  Wiki.js / RAGFlow (NocoDB 6614 → 0, Wiki.js 83 → 0, RAGFlow landing
  200 → 000) — see Notable-entity § "2026-08-15 sources-sync bug"
  below. 10 dirty wiki files in the working tree
  (`.last-update.json` + `quickstart.md` + `sources/README.md` +
  `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` +
  `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md`
  + `sources/wikijs.md`) are **accumulated** synthesis-layer edits
  from the prior HN-1 2026-08-13 + HN-1 2026-08-15 + web-search-1
  2026-08-15 + this git-repo-1 2026-08-15 runs that are pending the
  next CLI orchestration commit. Wiki edits this run: (a)
  `/sources/git-repo.md` (this page) — refreshed frontmatter HEAD
  pointers (vault HEAD unchanged, wiki HEAD `1737454` → `2507925`,
  tags + `2026-08-15`, timestamp → `2026-08-15T18:07:49Z`), refreshed
  the Connector / State section to the new
  `2026-08-15T18-07-49-711Z` raw manifest, refreshed the obsidian-vault
  working-tree-status section to 2026-08-15 (no new untracked files;
  the `Review/zhou2023_computer_vision_microfluidics.md` carries
  forward as still-untracked), refreshed the openwiki-wiki
  working-tree-status section to 2026-08-15 (4 new wiki commits + 10
  uncommitted synthesis-layer edits + the count-data wipe surfaced in
  the Notable-entity section), refreshed the recent-commits table with
  the 4 new wiki commits on top of the prior 2026-08-13 cluster,
  refreshed the Summary-of-last-24-hours table with the 2026-08-13 →
  2026-08-15 window data (0 vault commits / 4 wiki commits / 10
  uncommitted wiki files / operational issue row), refreshed the
  Notable-entity section to add a "2026-08-15 sources-sync bug"
  entry + carry-forward note on the `Review/` subfolder entry,
  refreshed the synthesis-policy section with this run's delta summary
  + the operational-issue observation; (b) `/themes/05-robin-research.md`
  — vault-snapshot metadata refreshed (fetch timestamp →
  `2026-08-15T18:07:49Z`, raw-manifest path → the new
  `2026-08-15T18-07-49-711Z` manifest); the vault HEAD pointer stays
  `297f106d` (unchanged across both 2026-08-13 and 2026-08-15 fetches);
  (c) `/quickstart.md` — added the "Latest update — git-repo-1
  (2026-08-15T18:07Z)" paragraph ahead of the current
  "Latest update — web-search-1 attempted 2026-08-15 skipped"
  paragraph; demoted the web-search-1 paragraph to a prior-run
  reference; updated the Backlog git-repo entry to reflect the new
  wiki HEAD `2507925` + 4 new wiki commits + 10 uncommitted files +
  the operational issue note.
  **No `/commitments.md` row, no `/open-questions.md` row, no
  `/personal-logistics.md` item, no `/themes.md` row change** — the
  vault delta is empty (no new commits, no new untracked files), and
  the existing 2026-08-12 Liang 2026 commitment /
  `class-organoid-3d-bioprinting` theme row already cover the
  structural evidence.
 - **Previous run (2026-08-13, git-repo-1 18:08Z):** **0 new vault commits**
  in the 24-hour window — the vault HEAD was unchanged at `297f106d`
  (the 2026-08-12 Liang 2026 4-commit LDR cluster remained the most
  recent vault activity). The only vault-side delta was **1 new
  untracked file**: `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`
  — the **first entry in a new `Review/` subfolder** under
  `04-Literature/Deep-Reads/` (see Notable-entity entry above). 1
-  noise file (`__pycache__/...pyc`) is ignored. Wiki-side: **2 new
+  noise file (`__pycache__/...pyc`) was ignored. Wiki-side: **2 new
  wiki commits** landed (`8ddc6d9` daily update 2026-08-13 + `1737454`
  sources-sync 2026-08-13), advancing HEAD from `c57ead4` (2026-08-12)
  to `1737454` (2026-08-13). 8 dirty wiki files in the working tree
-  (`.last-update.json` + `quickstart.md` + 4 × sources/{hackernews,
+  were synthesis-layer edits from the prior HN-1 2026-08-13 run that
-  nocodb, ragflow, seafile, wikijs}.md + `themes.md`) are
+  landed after `1737454` committed and were pending the next CLI
-  synthesis-layer edits from the prior HN-1 2026-08-13 run that
+  orchestration commit.
  landed after `1737454` committed and are pending the next CLI
  orchestration commit. Wiki edits this run: (a) `/sources/git-repo.md`
  (this page) — refreshed HEAD pointers (vault HEAD unchanged,
  wiki HEAD `c57ead4` → `1737454`), refreshed the untracked-file
  enumeration with 2 NEW rows (`__pycache__/...pyc` + the new
  `Review/zhou2023_computer_vision_microfluidics.md`), refreshed the
  openwiki-wiki working-tree-status section to 2026-08-13, refreshed
  the recent-commits table with `8ddc6d9` + `1737454`, refreshed the
  Summary of last 24 hours table to reflect 0 vault commits / 2 wiki
  commits, added a new "Review/ subfolder — first entry (2026-08-13,
  uncommitted)" Notable-entity entry (structural significance of the
  new subfolder), refreshed the synthesis-policy section with this
  run's delta summary; (b) `/themes/05-robin-research.md` — added the
  new `Review/` subfolder row to the `04-Literature/Deep-Reads/`
  breakdown table, refreshed vault-snapshot metadata (latest fetch
  timestamp + raw-manifest path + working-tree state); (c)
  `/quickstart.md` — added the "Latest update — git-repo-1
  (2026-08-13T18:08Z)" paragraph ahead of the current
  "Latest update — hackernews-1 (2026-08-13T18:00Z)" paragraph; demoted
  the HN-1 paragraph to a prior-run reference; updated the Backlog
  git-repo entry to reflect the new untracked `Review/` file.
  **No `/commitments.md` row, no `/open-questions.md` row, no
  `/personal-logistics.md` item, no `/themes.md` row change** — the
  vault delta is a single uncommitted file, not a published artifact,
  and the existing 2026-08-12 Liang 2026 commitment /
  `class-organoid-3d-bioprinting` theme row already cover the
  structural evidence.
 - **Previous run (2026-08-12, git-repo-1 18:08Z):** 4 new vault commits
  on the **same single Liang 2026 Sci Rep liver organoid paper** walked
  through Robin's standard 3-stage LDR cycle (`e542c977` adds file →
@@ -2,7 +2,7 @@
 type: "Reference"
 title: "Hacker News — evidence index"
 description: "Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items."
-tags: [hackernews, evidence-index, source, 2026-08-13, 2026-08-12, 2026-08-10]
+tags: [hackernews, evidence-index, source, 2026-08-15, 2026-08-13, 2026-08-12, 2026-08-10]
 ---
 # Hacker News — evidence index
@@ -15,10 +15,38 @@ Compact evidence trail for the Hacker News connector (`hackernews-1`, Robin-cura
 - **Backend:** public HN feeds (`top`, `new`) + Algolia HN search queries
 - **Auth:** none — public feeds
 - **Window:** last 24 hours
- **Latest fetch:** `2026-08-13T18:00:30Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-08-12 18:00, 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below)
+- **Latest fetch:** `2026-08-15T18:00:28Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-08-13 18:00, 2026-08-12 18:00, 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below)
- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-08-13T18-00-02-662Z/hackernews-results.json` (current — one directly-relevant `agent-memory-architecture` evidence (MCP Memory using OKF), see 2026-08-13 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-12T18-00-01-956Z/hackernews-results.json` (prior — one new low-engagement organoid signal, see 2026-08-12 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-10T18-00-02-327Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-10 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T18-00-01-989Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T03-14-40-856Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 03:15 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-07T12-29-44-173Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-07 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-03T18-00-02-766Z/hackernews-results.json` (earlier — material findings, see 2026-08-03 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-02T18-00-02-278Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-08-01T18-00-02-274Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-31T18-00-02-519Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-30T18-00-02-784Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-29T18-00-02-667Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-28T18-00-02-178Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-27T18-00-02-615Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-16-06-805Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-00-02-441Z/hackernews-results.json`
+- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-08-15T18-00-02-001Z/hackernews-results.json` (current — fourth consecutive fully-zero Algolia lane pull since 2026-08-07; one high-engagement Robin-stack-adjacent: `49309549` Auto-research with codex 232x Faster Kernel, see 2026-08-15 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-13T18-00-02-662Z/hackernews-results.json` (prior — one directly-relevant `agent-memory-architecture` evidence (MCP Memory using OKF), see 2026-08-13 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-12T18-00-01-956Z/hackernews-results.json` (prior — one new low-engagement organoid signal, see 2026-08-12 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-10T18-00-02-327Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-10 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T18-00-01-989Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T03-14-40-856Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 03:15 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-07T12-29-44-173Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-07 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-03T18-00-02-766Z/hackernews-results.json` (earlier — material findings, see 2026-08-03 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-02T18-00-02-278Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-08-01T18-00-02-274Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-31T18-00-02-519Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-30T18-00-02-784Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-29T18-00-02-667Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-28T18-00-02-178Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-27T18-00-02-615Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-16-06-805Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-00-02-441Z/hackernews-results.json`
-## Latest update — 2026-08-13 18:00 UTC
+## Latest update — 2026-08-15 18:00 UTC
 - **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed had 30 IDs (19 unique resolved items; the other 11 IDs returned null/empty from the HN API and were dropped from the resolved item pool), `best` feed had 30 IDs (4 unique resolved items — 3 of those 4 also appeared in `top`); deduplication across both feeds gave **19 unique items** (4 overlap: `49303202` Firefox uBlock Origin, `49304447` Going Dark law enforcement hacking, `49307592` "The other Sean Byrne doesn't exist", `49309549` Auto-research with codex 232x Faster Kernel). The 6-query lane produced the hit table below; the connector completed normally at `fetchedAt: 2026-08-15T18:00:28.954Z` (24-hour window).
 - **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries.** All six Algolia searches (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`) returned `nbHits=null` / zero items in the 24 h window. A title/URL regex sweep across the 19 unique top+best items also turned up zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items. The "no material HN footprint for the 4 vendor lines" finding continues to hold — this is the **fourth pull since 2026-08-07 to have a fully-zero Algolia lane** (after the 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 pulls; the 2026-08-10 + 2026-08-12 pulls had Algolia hits that were all string-collision noise rather than fully-zero). The Tavily web-search lane remains the better signal for vendor news.
 - **Workflow lane:** **zero positive `openwiki` brand hits; zero `deepagents` hits.** `openwiki` and `deepagents` both returned `nbHits=null` — so the `openwiki-brand` watchlist row on `/themes.md` stays at Last seen 2026-07-16 and the `agent-memory-architecture` adjacency note for "OpenWiki brand signal" stays at Last seen 2026-07-29. The 19 unique top+best items include **no directly-relevant item for any `/themes.md` row** but include one **adjacent, high-engagement AI-agent item** that touches Robin's broader agent-stack lane — plus three **adjacent life-science items** that fall outside the four application domains (3D cell culture, 3D bioprinting, neuroscience in vitro, organoid workflows) and stay off the `class-organoid-3d-bioprinting` watchlist per the established "domain-anchored only" scope rule. The Codex-usage essay stays adjacent-not-promoted under the brief's "low-engagement items are watchlist by default; promotion requires recurrence, strong engagement, or corroboration" rule **and** the `/themes.md` scope discipline ("Codex surface / TUI / usage changes stay adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself" — see the 2026-07-27 / 2026-07-30 / 2026-08-03 / 2026-08-10 / 2026-08-12 / 2026-08-13 traceability entries below):
  - **49309549** "Auto-research with codex: How I achieved a 232x Faster Kernel" (275 pts, 75 cmts, top+best feed, by `tosh` 2026-08-15, https://sankalp.bearblog.dev/autoresearch/). Personal-blog essay on using Codex (OpenAI coding agent) for "auto-research" — i.e. letting Codex iteratively profile, optimize, and benchmark a GPU kernel until the user achieved a 232× speedup over the PyTorch baseline. **Strongest adjacents to Robin's Codex CLI fallback** — Codex is on Robin's stack as the named fallback agent surface per [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Codex CLI (fallback)", and the "auto-research" framing directly speaks to how the broader Codex community is using Codex for autonomous optimization work. However: (a) this is a **personal-blog essay by a single author on using Codex**, not a Codex release or a Codex CLI release; (b) the established scope rule on Codex-wrapper / TUI / usage changes keeps them adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself (per the 2026-07-27 / 2026-07-30 / 2026-08-03 / 2026-08-10 / 2026-08-12 / 2026-08-13 traceability entries below). **Adjacent-not-promoted** per scope. Author `tosh` also submitted `49214008` DeepSeek V4 Flash 0731 (2026-08-08 03:15 pull) — same person surfacing adjacent items across two pulls, but the items themselves are unrelated (DeepSeek V4 Flash is a model release; auto-research-with-codex is a personal-blog essay on using Codex). The 275-pt engagement is high enough to surface in any HN digest even if the finding is not promoted. If Robin starts using Codex (instead of Codex CLI fallback) for autonomous kernel / repo optimization on a future pull, the existing `Codex CLI (fallback)` section in [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Adjacent workflow signals (HN / Tavily)" or its "Codex CLI adoption question" backlog item could be revisited.
  - **49309451** "Working with AI Feels More Like Leadership Than Coding" (151 pts, 109 cmts, top feed, by `allenb` 2026-08-15, https://allen.bargi.org/notes/working-with-ai-feels-like-leadership/). Personal-essay on AI-assisted coding being closer to "leadership" (delegation, judgment, direction) than to direct authoring. Adjacent to the broader AI-coding-agent lane that Robin's daily-driver Hermes / MiniMax code / Codex CLI stack lives in, but **not** on Robin's named stack. Off-scope per brief.
  - **49310495** "Yadda 3.0.0: BDD in the Age of AI Agents" (37 pts, 16 cmts, top feed, by `scresswell` 2026-08-15, http://www.stephen-cresswell.com/2026/08/15/Yadda-3.0.0-BDD-in-the-Age-of-AI-Agents.html). New 3.0.0 release of Yadda, a BDD (Behavior-Driven Development) JavaScript testing framework, reframed for AI-agent-driven test workflows. Adjacent to the AI-coding-agent lane but **not** on Robin's named stack. Off-scope per brief.
  - **49310362** "Could a computer scientist build a brain?" (32 pts, 19 cmts, top feed, by `ogundipeore` 2026-08-15, https://stankerstjens.github.io/could-a-computer-scientist-build-a-brain/). Personal-essay on computational neuroscience. Strong topical fit to the **neuroscience-in-vitro** line on the `class-organoid-3d-bioprinting` row — but the essay is from a **computer-science perspective** (computational / algorithmic model of the brain), not from a 3D cell culture / organoid / in-vitro electrophysiology angle. Off-scope per brief's "domain-anchored only" rule. No Last-seen refresh on the theme row.
  - **49312008** "A controversial Alzheimer's surgery is said to reverse symptoms" (62 pts, 17 cmts, top feed, by `jeffreyrogers` 2026-08-15, https://www.nature.com/articles/d41586-026-02448-x). Nature news commentary on a controversial deep-brain-stimulation Alzheimer's surgery. Life-sciences adjacent but **outside Robin's 4 application domains** — clinical neurology rather than 3D cell culture / 3D bioprinting / in-vitro neuroscience / organoid workflows. Off-scope per brief.
  - **49311651** "Semaglutide linked to 26% lower 5-year predicted dementia risk" (95 pts, 59 cmts, top feed, by `randycupertino` 2026-08-15, https://alz-journals.onlinelibrary.wiley.com/doi/10.1002/dad2.70432). Alzheimer's & Dementia journal paper on semaglutide (GLP-1 agonist) and predicted dementia risk. Life-sciences adjacent but **outside Robin's 4 application domains** — clinical neurology / pharmacology rather than 3D cell culture / 3D bioprinting / in-vitro neuroscience / organoid workflows. Off-scope per brief. (Note: the same theme — semaglutide / GLP-1 — was a prior pull's `49263658` "The brain may be about to have its Ozempic moment" Economist essay in the 2026-08-12 pull; still outside the 4 domains, so no theme-row refresh is warranted.)
  - **49310682** "The First At-Home Test for Infected Ticks Could Improve Lyme Disease Diagnosis" (111 pts, 42 cmts, top feed, by `gmays` 2026-08-15, https://www.smithsonianmag.com/innovation/the-first-at-home-test-for-infected-ticks-could-improve-lyme-disease-diagnosis-180989235/). Smithsonian feature on a consumer / clinical Lyme-disease diagnostic. Life-sciences adjacent but **outside Robin's 4 application domains** — infectious-disease diagnostics rather than 3D cell culture / 3D bioprinting / in-vitro neuroscience / organoid workflows. Off-scope per brief.
 - **Other feed items not promoted:** 12 additional top/best items, all off-scope per the brief's scope filter — `49303202` "Firefox is now the last major browser that still supports uBlock Origin" (1531 pts, 577 cmts — highest-engagement item of the pull, by `DemiGuru`, pcworld.com — browser news, off-scope); `49304447` "Going Dark, and the era of law enforcement hacking" (422 pts, 221 cmts, top+best — cryptography essay, off-scope); `49307592` "The other Sean Byrne doesn't exist" (326 pts, 157 cmts, top+best, by `rdl` 2026-08-15, conic.al — essay on identity / namesakes, off-scope); `49308685` "Using GCC's Nested Functions with Wide Pointers and No Trampolines II" (68 pts, 34 cmts, top — compiler essay, off-scope); `49310926` "A Spectre Is Haunting Unicode" (43 pts, 6 cmts, top — Unicode essay, off-scope); `49310533` "Show HN: Quasicrystals Animation Playground with WebXR" (28 pts, 8 cmts, top — WebXR art, off-scope); `49312165` "The Dutch Community Where People Live on Strips of Land in a Lake" (25 pts, 6 cmts, top — lifestyle essay, off-scope); `49306333` "2D Gaussian Splatting for Bézier Spline Line Art Vectorization" (23 pts, 2 cmts, top — Disney Research, off-scope graphics); `49309923` "T3X/0 a Minimal Procedural Language" (23 pts, 0 cmts, top — procedural language, off-scope); `49310128` "Xorshift Generators" (19 pts, 13 cmts, top — random-number essay, off-scope); `49312413` "Europe's scorched landscapes seen from space after summer heatwaves" (19 pts, 3 cmts, top — climate news, off-scope); `49312465` "TreasuryDirect: Prepare for ID.me – Your New Way to Log In" (10 pts, 10 cmts, top — government IT, off-scope). Engagement range 10–1531 pts across the 12 items; none matches a Robin in-scope vendor / customer / application-domain / named-stack keyword.
 - **Synthesis result:** **no theme refresh, no commitment row, no open-question row, no personal-logistics item.** The `class-organoid-3d-bioprinting` row on `/themes.md` stays at Last seen 2026-08-12 (no organoid item this pull — the closest life-science items are clinical neurology / infectious disease / pharmacology, all outside the 4 application domains). The `agent-memory-architecture` row stays at Last seen 2026-08-13 (no OKF / MCP Memory / LLM Wiki item). The `MiniMax-m3` row stays at Last seen 2026-08-03 (no MiniMax model release). The `hermes-agent-v0-19-quicksilver` row stays at Last seen 2026-08-03 (no Hermes Agent release). The `openwiki-brand` watchlist row stays at Last seen 2026-07-16 (no positive `openwiki` hits). All seven flag-for-traceability items stay adjacent-not-promoted under the existing scope discipline. **Key call**: **`49309549` auto-research-with-codex 232x Faster Kernel** (275 pts, 75 cmts) is the **highest-engagement Robin-stack-adjacent item of the pull** — and the strongest non-OKF / non-MCP signal on Robin's agent-stack lane since the 2026-08-13 MCP Memory Show HN — but it stays adjacent-not-promoted because it is a personal-blog essay on using Codex (not a Codex CLI release), and the established scope rule keeps Codex surface / TUI / usage changes adjacent unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself. **This is the fourth consecutive fully-zero Algolia lane pull since 2026-08-07** (after 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13), confirming that the empty-pulls-on-vendor-queries pattern is normal cadence under the 6-query LLM-agent topic set — not an outage, no config-side intervention needed. The Tavily (web-search) lane remains the productive lane for vendor news; the HN lane's stable role is now "high-engagement agent-stack adjacents (Codex / DeepSeek / Muse Glimmer / MCP / Docker Sandboxes / Claude Code) + low-engagement application-domain watchlist items (organoid / neuroscience / Wired features)" rather than vendor-direct signals.
 | Query lane | Queries run | Qualifying results |
 | --- | --- | --- |
 | Life sciences / vendors | `organoid`, `CelVivo`, `3Brain`, `Cellink` | 0 (all four queries returned `nbHits=null`) |
 | AI workflow | `openwiki`, `deepagents` | 0 (both queries returned `nbHits=null`) |
 Raw dump: `~/.openwiki/connectors/hackernews/raw/2026-08-15T18-00-02-001Z/hackernews-results.json`.
 ### Flag-for-traceability: Auto-research with codex (232x Faster Kernel), Working with AI as Leadership, Yadda 3.0.0 BDD — adjacent, off-scope
 - **49309549** (275 pts top+best, 75 cmts) Auto-research with codex: How I achieved a 232x Faster Kernel — **highest-engagement Robin-stack-adjacent item of the pull**, by `tosh` (same submitter as `49214008` DeepSeek V4 Flash 0731 from the 2026-08-08 03:15 pull — but the items themselves are unrelated). Personal-blog essay on using Codex (OpenAI coding agent) for autonomous GPU-kernel optimization, achieving a 232× speedup over the PyTorch baseline. Codex is on Robin's stack as the named fallback agent surface per [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Codex CLI (fallback)", and the "auto-research" framing directly speaks to how the broader Codex community is using Codex for autonomous optimization. However, this is a **personal-blog essay by a single author on using Codex**, not a Codex release / Codex CLI release; the established scope rule on Codex-wrapper / TUI / usage changes keeps them adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself. **Adjacent-not-promoted** per scope. The 275-pt + 75-cmt engagement is high enough to surface in any HN digest even if the finding is not promoted. **No commitment row** — Codex CLI adoption is already tracked as a backlog item on `/themes/03-ai-agents.md` § "Backlog" ("Codex CLI adoption question"); if Robin starts using Codex for autonomous kernel / repo optimization on a future pull, that backlog item is the trigger for a follow-up.
 - **49309451** (151 pts top, 109 cmts) Working with AI Feels More Like Leadership Than Coding — personal-essay on AI-assisted coding as "leadership". Adjacent to the AI-coding-agent lane but **not** on Robin's named stack. Off-scope per brief.
 - **49310495** (37 pts top, 16 cmts) Yadda 3.0.0: BDD in the Age of AI Agents — new 3.0.0 release of Yadda, a BDD (Behavior-Driven Development) JavaScript testing framework, reframed for AI-agent-driven test workflows. Adjacent to the AI-coding-agent lane but **not** on Robin's named stack. Off-scope per brief.
 ## Update — 2026-08-13 18:00 UTC
 - **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed returned 25 items, `best` feed returned 7; deduplication gave **27 unique items across both feeds** (5 overlap: `49285244` DeepSeek Harness developer preview, `49281916` Codex in ChatGPT desktop app for Linux preview, `49284774` Deutsche Bank yuan clearing, `49286341` Spaghettifying DRAM, `49285982` Gloomberb). The 6-query lane produced the hit table below; the connector completed normally at `fetchedAt: 2026-08-13T18:00:30.603Z` (24-hour window).
 - **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries.** All six Algolia searches (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`) returned `nbHits=0` in the 24 h window. A title/URL regex sweep across the 27 unique top+best items also turned up zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items. The "no material HN footprint for the 4 vendor lines" finding continues to hold — this is the third pull since 2026-08-07 to have a fully-zero Algolia lane (after the 2026-08-08 03:15 + 2026-08-08 18:00 pulls); the 2026-08-10 + 2026-08-12 pulls had Algolia hits that were all string-collision noise. The Tavily web-search lane remains the better signal for vendor news.
@@ -4,7 +4,7 @@
 - [Agents 代理商档案索引 — 跨 agent CRM 同步](agents.md) - Cross-agent index of the Obsidian vault 02-Clients/Agents/* profiles (which agents Robin is actively working with, mapped by vendor product line). Base identity only — sensitive fields (phone / WeChat / email / end-customer list / opportunity value) live only in the private vault. Updated 2026-08-07 with _known_associations.md product-line → agent → end-customer mapping.
 - [全国经销商地图 (2026-08-07 时点)](distributors-china-2026.md) - Compact index of Robin's 2026-08-07 China distributor baseline (259 dealers across 7 regions, replacing 261 in the 2026-07-24 baseline) plus the new product-association index _known_associations.md. Surfaces CelVivo ClinoStar → 济南成全 + FemtoBiomed CellShot → 9X Bio → TriArm Therapeutics chain. Routes pricing-sensitive fields to the private Obsidian vault per /sources/agents.md privacy rule.
 - [飞书邮箱 (Robin customer mailbox)](feishu-mail.md) - Planned cross-agent mailbox sync target for Robin's Feishu (飞书) mailbox (imap.feishu.cn:993 / imap.larksuite.com:993) — would let MiniMax code / Hermes recall 'what did Robin last discuss with customer X' from email metadata + summaries. Not yet provisioned — IMAP credentials + update script + crontab still pending Robin setup; this page documents the planned configuration and the sync policy that will be applied once provisioned.
- [Git repo — evidence index (Obsidian vault, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 1737454, 2026-08-13). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
+- [Git repo — evidence index (Obsidian vault, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12, unchanged across the 2026-08-13 / 2026-08-15 fetches) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 2507925, 2026-08-15). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
 - [Hacker News — evidence index](hackernews.md) - Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items.
 - [文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件)](ldr-report-template.md) - Master template for Robin's literature-deep-read (LDR) pipeline — consolidates 4 literature skills (`literature-deep-read` / `research` / `review` / `curation-for-sales`) into a single 8-rule + 3-trigger + 5-section "真适合浏览" report format. Synthesized from 4-27 SOP范本 + 7-27 实战 lessons (Tasevska / Raji / Bosnjakovic). Triggers "精读吧" / "发 wikijs" / "入库" / "A" / Id/DOI/PMID/PDF signals into 4-step精简 or 8-step完整 flows. PDF全文必传 + PyMuPDF xref去重 + 9项强制 + SeaFile hostname `fb.biokingdom.top` + NocoDB v1 JSON + 3张真图 + `journal-year-topic` 报告路径.
 - [Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)](literature-cel-bosnjakovic-2025-pah-deepread.md) - Deep-read synthesis of Bosnjakovic A et al. 2025 bioRxiv preprint (DOI 10.1101/2025.07.10.663939v1, 2025-07-10) — 21-day mature HepG2 3D spheroids with graded non-cytotoxic BaP + BBF (PAH代表物) exposure for metabolomics biomarker discovery. Robin's connection: 3D spheroid protocol maps directly onto CelVivo ClinoStar dynamic culture; supports PAH exposure metabolomics positioning for hepatotoxicity / NAFLD modeling applications. 精读 2026-07-27.
@@ -15,14 +15,14 @@
 - [Sharma 2026 — vascularized retinal organoid RGC survival and maturation (Cell Stem Cell)](literature-sharma-2026-cell-stem-cell-vascularized-retinal-organoid-rgc-deepread.md) - Deep-read synthesis of Sharma K et al. (2026) Cell Stem Cell — transiently vascularized human retinal organoids with RGC 18.2% vs ctrl-RO 1.21% at week 18, W31 ON/OFF/ON-OFF light responses, C3 endothelial monolayer integration strategy.
 - [3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)](literature-tasevska-2025-deepread.md) - Deep-read synthesis of Tasevska T et al. 2025 European Journal of Pharmaceutical Sciences 206:106998 (DOI 10.1016/j.ejps.2024.106998, 精读 2026-07-27) — first systematic SSE semi-solid extrusion vs DLP digital-light-processing comparison for sustained-release HCTZ (hydrochlorothiazide) tablets, with focus on SSE matching Cellink BIO X extrusion principle. Supports Robin's 3D-printed personalized-dose / sustained-release positioning and SSE extruder cross-sell narrative for Cellink BIO X accounts.
 - [Literature Deep-Reads — cross-agent deep-read index](literature.md) - Cross-agent index of Robin's literature deep-reads across the 4 vendor product lines (CelVivo / 3Brain / Cellink / Femtobiomed) and adjacent application domains. Backed by the Obsidian vault 04-Literature/Deep-Reads/ and the flywheel-sync pipeline; synthesis pages are linked per paper.
- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md) - Auto-synced index of Robin's NocoDB literature and corporate databases (13 literature bases + 2 company bases) used by MiniMax code / Hermes cross-agent queries. Last sync 2026-08-12, total 6614 records. Companion layer to RAGFlow (PDF full-text), Obsidian (deep-reads), and OpenWiki (this synthesis index).
+- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md)
 - [OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)](OpenWiki%E9%80%9F%E6%9F%A5%E6%89%8B%E5%86%8C.md) - Compact OpenWiki cheat-sheet that condenses the 2026-07-27 6-conversation walkthrough into a single ready-to-share document. Designed for one-shot delivery to any agent / colleague / customer / manager who asks 'what is OpenWiki?' — covers the core concept, structure, sync model, and 4 active connectors in one page.
 - [RAGFlow 文档采样索引](ragflow-documents.md) - Document-level sample index of Robin's RAGFlow instance (http://10.10.10.254:9980) — 18 KBs / 32709 total docs / 401 sample entries (last sync 2026-08-03). Captures the 30-doc-per-request server-side limit + offset bug that forces 12 large KBs to single-page samples. Lets MiniMax code / Hermes see 'what's in each KB' without SQL queries; complements `/sources/ragflow.md` (KB-level health + counts).
- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md) - Auto-synced health and KB index of Robin's RAGFlow instance (http://10.10.10.254:9980/) used for PDF full-text retrieval across 14 KBs. Last sync 2026-08-12 (landing 200, /api/v1/datasets 401). Companion layer to NocoDB (metadata) and OpenWiki (this synthesis index). Embedding / bge-reranker degraded since 2026-07-17 — NAS-side vector retrieval unavailable; metadata + chunk-level keyword grep still OK.
+- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md)
 - [Sources](README.md) - Per-connector evidence indexes and ingestion coverage for the local knowledge wiki; durable synthesis lives on canonical pages.
 - [RustDesk 自建 hbbs 完整配置笔记 (2026-08-05)](rustdesk-sop.md) - End-to-end deployment note for Robin's self-hosted RustDesk relay server (hbbs + hbbr) — Unraid NAS container (10.10.10.254) + OpenWrt reverse-proxy (10.10.10.252) + Tencent Light Cloud (43.160.207.177) + ITX client (192.168.31.14), with permanent password + key config. Supports remote control of the ITX 24h host (per `/commitments.md` `itx-24h-host-build-2026-q3`) and Robin's travel-laptop remote-access workflow.
 - [CelVivo 销售弹药清单 (2026-07-16 实战索引)](sales-ammunition.md) - Sales ammunition index for CelVivo ClinoStar / ClinoReactor — price-book SKUs (ClinoReactor 12-pack, ClinoStar, SP5D-24W, Demo kit), 8-protocol SOP series (ClinoReactor prep / media change / organoid gardening / speed-tuning / alginate / VitroGel), and 5 organ-specific application cases (HepG2, FTC-133, SCLC, TNBC, ClinoStar vs Orbital Shaker). Sources from RAGFlow CelVivo KB + CelVivo commercial KB; manually curated from Robin + Hermes 实战 lessons. Used by any agent answering CelVivo ClinoReactor pricing / demo / customer-pitch queries.
- [SeaFile 大文件存储索引](seafile.md) - Auto-synced index of Robin's SeaFile large-file storage instance (http://10.10.10.254:9898/, public domain https://fb.biokingdom.top) used to host deep-read PDF + figure attachments. Last sync 2026-08-12. Forms the storage layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin).
+- [SeaFile 大文件存储索引](seafile.md)
 - [CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照)](vault-mtime-snapshot-2026-07-16.md) - Historical mtime snapshot of Robin's Obsidian vault from 2026-07-16 — captures CelVivo deep-read activity (0 new entries in the 7-day window 2026-07-09 → 2026-07-16; last activity 2026-07-05), 6 entries in the 30-day window, and ClinoReactor keyword hits. Provides a baseline reference for cross-agent vault state because WSL laptop vault is not directly readable from container agents. Pre-dates the 2026-08-07 distributor refresh + 2026-08-12 Liang 2026 / 2026-08-13 Review/ subfolder activity — superseded by `/themes/05-robin-research.md` for current vault state.
 - [Web Search Evidence](web-search.md) - Compact, source-backed evidence and ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news.
- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md) - Auto-synced index of Robin's Wiki.js Biokingdom instance (http://10.10.10.254:3000/graphql) used for cross-agent document publishing. Last sync 2026-08-12, GraphQL sample union (5 orderBy) returns 83 unique pages but server-side cap on `pages.list(limit:N)` is ~50; real page count estimated ≥1704 (max page id). Forms the publishing layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin).
+- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md)
@@ -1,27 +1,33 @@
 ---
 type: "Reference"
 title: "NocoDB 文献库索引 — 跨 agent 数据层"
 openwiki_generated: true
 ---
 # NocoDB 文献库索引 — 跨 agent 数据层
 > 数据源: NocoDB 13 个文献库 + 2 个公司库 (实时,每次 OpenWiki cron 跑时更新)
 > 用途: MiniMax code / Hermes 跨 agent 问 "Robin 的 NocoDB 里有什么"
 > 更新: 自动（`~/.openwiki/update-sources.sh` 每天 02:30 拉一次,数据写入本页后 commit + push Gitea）
-> 上次同步: **2026-08-14T18:30:42Z** · **总记录数: 0**
+> 上次同步: **2026-08-12T18:30:03Z** · **总记录数: 6614**
 ## 13 个文献库 (实测计数)
 | Table ID | 库名 | 记录数 |
 | --- | --- | --- |
-| `mxobo9ugqsjiu0o` | brain_organoid_literature |  |
+| `mxobo9ugqsjiu0o` | brain_organoid_literature | 103 |
-| `mn5okgkuqpn061d` | intestinal_organoid_literature |  |
+| `mn5okgkuqpn061d` | intestinal_organoid_literature | 9 |
-| `moev05yaip3qthv` | Celvivo_literature (CORE) |  |
+| `moev05yaip3qthv` | Celvivo_literature (CORE) | 109 |
-| `mnv01eu4xoi7t81` | cardiac_organoid_literature |  |
+| `mnv01eu4xoi7t81` | cardiac_organoid_literature | 11 |
-| `mwj6qjhuuksvs43` | cancer_organoid_literature |  |
+| `mwj6qjhuuksvs43` | cancer_organoid_literature | 129 |
-| `mx6vlorhme34zqt` | liver_organoid_literature |  |
+| `mx6vlorhme34zqt` | liver_organoid_literature | 28 |
-| `m4rz82bhhcrs2ip` | other_organoid_literature |  |
+| `m4rz82bhhcrs2ip` | other_organoid_literature | 724 |
-| `m8abmmwrgchr9ni` | kidney_organoid_literature |  |
+| `m8abmmwrgchr9ni` | kidney_organoid_literature | 23 |
-| `mun191tsudjdtga` | retinal_organoid_literature |  |
+| `mun191tsudjdtga` | retinal_organoid_literature | 4 |
-| `m65htyq25vmpysq` | Cellink_literature |  |
+| `m65htyq25vmpysq` | Cellink_literature | 2499 |
-| `mri6u97xrxi0vvm` | organoid_literature (old) |  |
+| `mri6u97xrxi0vvm` | organoid_literature (old) | 2780 |
-| `mr8wrky2um6gwev` | lung_organoid_literature |  |
+| `mr8wrky2um6gwev` | lung_organoid_literature | 48 |
-| `m76t4vsfar89w0h` | 3Brain_literature |  |
+| `m76t4vsfar89w0h` | 3Brain_literature | 147 |
 ## 跟其他工具的互补关系
@@ -36,3 +42,7 @@
 - 自动触发: `~/.local/bin/openwiki-update-sources.sh` (每天 02:30 触发)
 - 手动触发: `bash ~/.local/bin/openwiki-update-sources.sh`
 - 数据格式: 跟 `openclaw-imports/nocodb` skill 共用
 ## 操作注意 (2026-08-15)
 > 2026-08-15 02:31 (sources-sync 2507925) 抓取失败 / 数据被清空:本页 `上次同步` 字段从 `2026-08-12T18:30:03Z · 6614` 变为 `2026-08-14T18:30:42Z · 0`,13 个表记录数全部被清空。`2507925` commit 把空数据写入了 HEAD。`git show 1737454:sources/nocodb.md` 包含上一次成功抓取的 6614 记录数 — 该快照保留在这里以便后续修复。下次 sources-sync cron 跑时,如果 2507925 bug 不复现,本表会再次填满。**当前 HEAD 上的数据是损坏的快照,不是真实 NocoDB 数据**;真实 NocoDB 数据按上次成功抓取记录是 6614。
@@ -1,19 +1,29 @@
 ---
 type: "Reference"
 title: "RAGFlow 全文检索索引 (Robin KB system)"
 openwiki_generated: true
 ---
 # RAGFlow 全文检索索引 (Robin KB system)
 > 数据源: RAGFlow (http://10.10.10.254:9980/) 14 个 KB 全文检索结果
 > 用途: MiniMax code / Hermes 跨 agent 问 "Robin 的 RAGFlow 里有什么"
 > 更新: 自动同步可用性 + 手动维护 KB 列表
-> 上次同步: **2026-08-14T18:31:10Z** · landing 000 · /api/v1/datasets 000
+> 上次同步: **2026-08-12T18:30:03Z** · landing 200 · /api/v1/datasets 401
 ## RAGFlow 服务可用性
 | Endpoint | HTTP code | 含义 |
 | --- | --- | --- |
-| GET / (landing) | 000 | 控制台可达 |
+| GET / (landing) | 200 | 控制台可达 |
-| GET /api/v1/health | 000 | API 健康 |
+| GET /api/v1/health | 404 | API 健康 |
-| GET /api/v1/datasets | 000 | KB 列表 endpoint |
+| GET /api/v1/datasets | 401 | KB 列表 endpoint |
 > 注意: 2026-07-17 起 Robin 桌面 embedding / bge-reranker 服务宕机,导致 NAS 上 RAGFlow KB retrieval (向量检索) 不可用,但元数据 + 文档下载仍 OK,KB 内容同步 (chunks 拉 + 本地 keyword grep) 走降级路径。
 ## 操作注意 (2026-08-15)
 > 2026-08-15 02:31 (sources-sync 2507925) 抓取失败 / 数据被清空:本页 `上次同步` 字段从 `2026-08-12T18:30:03Z · landing 200 · /api/v1/datasets 401` 变为 `2026-08-14T18:31:10Z · landing 000 · /api/v1/datasets 000`,可用性表三个 endpoint 都从 200/404/401 变为 000/000/000。`2507925` commit 把空数据写入了 HEAD。**当前 HEAD 上的 RAGFlow 可用性是损坏的快照,不是真实数据**;真实 RAGFlow 状态按上次成功抓取记录是 landing 200 + /api/v1/datasets 401 (即控制台可达、API KB 列表 endpoint 返回 401)。
 ## 14 个 KB 状态 (验证于 2026-07-16)
 ...
@@ -1,9 +1,15 @@
 ---
 type: "Reference"
 title: "SeaFile 大文件存储索引"
 openwiki_generated: true
 ---
 # SeaFile 大文件存储索引
 > 数据源: SeaFile (http://10.10.10.254:9898/) 共 N 个资料库
 > 用途: MiniMax code / Hermes 跨 agent 上传 / 分享 / 删除文件
 > 更新: 自动（每天 02:30 同步,sources/seafile.md 刷新）
-> 上次同步: **2026-08-14T18:30:45Z** · 
+> 上次同步: **2026-08-12T18:30:03Z** · 
 ## 配置 (v1.2 skill, 2026-07-16)
@@ -31,3 +37,7 @@
 - 自动触发: `~/.local/bin/openwiki-update-sources.sh` (每天 02:30)
 - 手动触发: `bash ~/.local/bin/openwiki-update-sources.sh`
 - 数据格式: 跟 `seafile-util` skill 共用 (Token / 9898 port / 401 fallback)
 ## 操作注意 (2026-08-15)
 > 2026-08-15 02:31 (sources-sync 2507925) 抓取失败 / 数据被清空:本页 `上次同步` 字段从 `2026-08-12T18:30:03Z` 变为 `2026-08-14T18:30:45Z`。注:SeaFile 资料库表 (4-6 个) 在 2026-08-12 已为空 (172ea96 等历史 commit 也是空表头 + 空内容),所以 2026-08-15 的清空对 SeaFile 来说是无操作 (没有从非空到空的状态变化);真正受 2026-08-15 bug 影响的是 NocoDB / Wiki.js / RAGFlow (从 6614/83/200 变为 0/0/000)。SeaFile 资料库表为空本身是更早的、尚未被修复的 cron issue — `git show 1737454:sources/seafile.md` 与 `git show 2507925:sources/seafile.md` 表内容一致(都是空)。
@@ -2,12 +2,20 @@
 type: "Reference"
 title: "Web Search Evidence"
 description: "Compact, source-backed evidence and ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news."
-tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-08-12]
+tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-08-12, 2026-08-15]
 ---
 # Web Search Evidence
-> Connector: `web-search-1` (Tavily). This page records compact, relevant evidence from Tavily pulls; search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC. The 2026-08-08, 2026-08-10, and 2026-08-12 update attempts were skipped because the connector is disabled and `TAVILY_API_KEY` is not present; no new 24-hour evidence was available on any of these three runs.
+> Connector: `web-search-1` (Tavily). This page records compact, relevant evidence from Tavily pulls; search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC. The 2026-08-08, 2026-08-10, 2026-08-12, and 2026-08-15 update attempts were skipped because the connector is disabled and `TAVILY_API_KEY` is not present; no new 24-hour evidence was available on any of these four runs.
 ## 2026-08-15 attempted update — skipped
 - **Status:** skipped. `web-search-1` is not enabled; the connector reports that `enabled=true` must be set in `~/.openwiki/connectors/web-search/config.json`.
 - **Authentication:** `TAVILY_API_KEY` is not present, so no Tavily request was made.
 - **Coverage:** no raw data files were written for this attempted 24-hour window. No new CelVivo, 3Brain, Cellink, or organoid findings were available for synthesis; the latest successful pull remains 2026-08-03 18:08 UTC.
 - **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md` from this source attempt.
 - **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08, 2026-08-10, and 2026-08-12 runs hit the same blocker; this is the fourth consecutive skip on the same code path.
 ## 2026-08-12 attempted update — skipped
@@ -1,9 +1,15 @@
 ---
 type: "Reference"
 title: "Wiki.js 索引 — 跨 agent 文档发布层"
 openwiki_generated: true
 ---
 # Wiki.js 索引 — 跨 agent 文档发布层
 > 数据源: Wiki.js (http://10.10.10.254:3000/graphql) Biokingdom 实例
 > 用途: MiniMax code / Hermes 跨 agent 检索 "Robin 在 Wiki.js 发布了什么"
 > 更新: 自动同步计数 + 手动维护目录
-> 上次同步: **2026-08-14T18:31:00Z** · GraphQL sample (5 orderBy union): **0 unique pages** · ID range 0..0 · 分布 
+> 上次同步: **2026-08-12T18:30:03Z** · GraphQL sample (5 orderBy union): **83 unique pages** · ID range 22..1704 · 分布 en=5, zh=78
 ## Wiki.js 概况
@@ -12,16 +18,20 @@
 | GraphQL API | `http://10.10.10.254:3000/graphql` |
 | Web UI (zh) | `http://10.10.10.254:3000/zh/home` |
 | Web UI (en) | `http://10.10.10.254:3000/en/home` |
-| **估计全页数** | **≥ 0 (基于 max page id)** — server-side ID gap 显著,实际数大于 sample union |
+| **估计全页数** | **≥ 1704 (基于 max page id)** — server-side ID gap 显著,实际数大于 sample union |
-| Sample union (5 orderBy) | 0 unique pages (GraphQL 返 50 cap) |
+| Sample union (5 orderBy) | 83 unique pages (GraphQL 返 50 cap) |
-| Min / Max ID | 0 / 0 |
+| Min / Max ID | 22 / 1704 |
-| Locale 分布 (sample) |  |
+| Locale 分布 (sample) | en=5, zh=78 |
-| Top-level 路径分布 (前 8, sample) |  |
+| Top-level 路径分布 (前 8, sample) | organoid=50, products=7, literature=5, articles=4, 3brain=2, 3brain-biocam-driver-api-v2-5=1, 3brain-hdmea-system=1, instruments=1 |
 | 主题 | 类器官 / 3D 生物打印 / HD-MEA / CRISPR 类器官精准医疗 |
 | 维护者 | Robin + LDR (literature-reading-queue skill 自动发布) |
 > ⚠️ **GraphQL `pages.list(limit:N)` 实际 server-side cap 到 ~50**,无论 N 多大。**Robin 的真实 Wiki.js 库 ≥ 1000+ 页** (按 max page id 推断),我 7/27 早的 "47" sample 是 server-side cap 的产物,**不是真实数**。多种 orderBy (TITLE / UPDATED / CREATED / ID / PATH) 5 个排序 union 才能看到 max_id,但仍未遍历完 1500+ 全部 page。完整全量只能通过爬 frontend / 直查 DB / 翻 Wiki.js 内部 API — 本 cron 不做。
 ## 操作注意 (2026-08-15)
 > 2026-08-15 02:31 (sources-sync 2507925) 抓取失败 / 数据被清空:本页 `上次同步` 字段从 `2026-08-12T18:30:03Z · 83 unique pages · ID range 22..1704` 变为 `2026-08-14T18:31:00Z · 0 unique pages · ID range 0..0`,概况表所有计数被清空 (estimated count → ≥0 / sample union → 0 / min/max ID → 0/0 / Locale 分布 → empty / 路径分布 → empty)。`2507925` commit 把空数据写入了 HEAD。`git show 1737454:sources/wikijs.md` 包含上一次成功抓取的 83 unique pages + ID range 22..1704 — 该快照保留在这里以便后续修复。**当前 HEAD 上的 Wiki.js 计数是损坏的快照,不是真实数据**;真实 Wiki.js 数据按上次成功抓取记录是 ≥1704 全页 / sample union 83 / ID range 22..1704。
 ## 主要页面分类 (按 URL path)
 ### 类器官 (organoid/list/*)
@@ -2,8 +2,8 @@
 type: "Reference"
 title: "Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)"
 description: "Synthesis page for Robin's personal research portfolio — Obsidian vault + literature deep-read pipeline + sales ammunition + China distributor map + active CRM profiles + work-rhythm snapshots. Output routes into vendor themes 01 (organoid-equipment) and 02 (bioprinting)."
-tags: [theme, research, vault, deep-read, sales, crm, life-sciences, 2026-08-13]
+tags: [theme, research, vault, deep-read, sales, crm, life-sciences, 2026-08-15, 2026-08-13]
-timestamp: 2026-08-13T18:08:25Z
+timestamp: 2026-08-15T18:07:49Z
 ---
 # Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)
@@ -50,19 +50,19 @@ The diagram shows Robin's research substrate: a single Obsidian vault with 8 buc
 ## Knowledge substrate: Obsidian vault
-Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08-13T18:08:25Z):
+Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08-15T18:07:49Z):
 | Field | Value |
 | --- | --- |
 | Repo path | `/home/ldw/workspace` |
 | Branch | `main` |
-| HEAD | `297f106d2b137af3480261052ff080cbc48d5b48` (**unchanged** since 2026-08-12 fetch — 0 new vault commits in the 2026-08-13 24-hour window) |
+| HEAD | `297f106d2b137af3480261052ff080cbc48d5b48` (**unchanged** across both 2026-08-13 and 2026-08-15 fetches — 0 new vault commits in the 2026-08-13T18:08Z → 2026-08-15T18:07Z 48-hour window; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity) |
-| Ahead of origin/main | 13 commits new since 2026-08-03 fetch (Fernandez Vallone 2026 + Microbioreactor 2026 + Liu 2026 v2-v11 + 4 经销商 hook 升级 + Wang 2024 Theranostics + **Phase A metadata batch + 2 sample runs** + **Liang 2026 liver organoid fibrosis platform 4-commit LDR cycle**); plus **25 untracked files** in working tree (added 2 since 2026-08-12: `__pycache__/...pyc` build noise + `Review/zhou2023_computer_vision_microfluidics.md` first entry in new `Review/` subfolder) |
+| Ahead of origin/main | 13 commits new since 2026-08-03 fetch (Fernandez Vallone 2026 + Microbioreactor 2026 + Liu 2026 v2-v11 + 4 经销商 hook 升级 + Wang 2024 Theranostics + **Phase A metadata batch + 2 sample runs** + **Liang 2026 liver organoid fibrosis platform 4-commit LDR cycle**); plus **23 untracked files** in working tree (unchanged from the 2026-08-13 fetch — 0 new untracked files appeared in the 2026-08-13T18:08Z → 2026-08-15T18:07Z 24-hour window) |
 | Auth | local path only — no remote, no credentials |
-| Working-tree state | dirty (1 nested-submodule + 1 untracked dir + 25 untracked files including 8 new `02-Clients/Agents/区域-2026-0807.md` + the new `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder untracked file) |
+| Working-tree state | dirty (1 nested-submodule + 1 untracked dir + 23 untracked files including 8 new `02-Clients/Agents/区域-2026-0807.md` + the still-untracked `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder file) |
-| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-08-13T18-08-25-206Z/manifest.json` |
+| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-08-15T18-07-49-711Z/manifest.json` |
-| **Latest cluster (2026-08-12, unchanged this fetch)** | **Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3-轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型) |
+| **Latest cluster (2026-08-12, unchanged across both 2026-08-13 + 2026-08-15 fetches)** | **Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3-轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型) |
-| **Latest uncommitted file (2026-08-13)** | `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — **first entry in the new `Review/` subfolder**; review-type papers stream separately from original-research stream |
+| **Latest uncommitted file (2026-08-13, still-uncommitted at 2026-08-15)** | `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — **first entry in the new `Review/` subfolder**; review-type papers stream separately from original-research stream; carry-forward status unchanged across the 2026-08-13 + 2026-08-15 fetches |
 ### Vault navigation index (top-level folders)