diff --git a/.last-update.json b/.last-update.json index dea1b2b..d67d27c 100644 --- a/.last-update.json +++ b/.last-update.json @@ -1,5 +1,5 @@ { - "updatedAt": "2026-08-13T18:18:06.096Z", + "updatedAt": "2026-08-15T18:15:44.470Z", "command": "update", "model": "MiniMax-M3", "status": "complete", diff --git a/quickstart.md b/quickstart.md index f5bc628..f0fd4a4 100644 --- a/quickstart.md +++ b/quickstart.md @@ -34,7 +34,14 @@ tags: [quickstart, navigation, openwiki, status] ## Current status - **Wiki state:** initialized — Hacker News, the local Obsidian vault, and Tavily web search are active and feeding `/sources/hackernews.md`, `/sources/git-repo.md`, `/sources/web-search.md`, and `/themes.md`. All 5 synthesis themes (`/themes/01-organoid-equipment.md`, `/themes/02-bioprinting.md`, `/themes/03-ai-agents.md`, `/themes/04-local-llm.md`, `/themes/05-robin-research.md`) are now generated. -- **Connectors:** Hacker News, git-repo, and web search active. The 2026-08-08, 2026-08-10, and 2026-08-12 web-search update attempts were skipped because the connector is not enabled and `TAVILY_API_KEY` is empty; the latest successful Tavily pull remains 2026-08-03 18:08 UTC. Gmail, Slack, Notion, and X are not yet configured — see "Adding sources" below. +- **Connectors:** Hacker News, git-repo, and web search active. The 2026-08-08, 2026-08-10, 2026-08-12, and 2026-08-15 web-search update attempts were skipped because the connector is not enabled and `TAVILY_API_KEY` is empty; the latest successful Tavily pull remains 2026-08-03 18:08 UTC. Gmail, Slack, Notion, and X are not yet configured — see "Adding sources" below. + +**Latest update — git-repo-1 (2026-08-15T18:07Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-08-15T18-07-49-711Z/manifest.json`. **Vault HEAD** unchanged at `297f106d2b137af3480261052ff080cbc48d5b48` (same as the 2026-08-12 and 2026-08-13 fetches) — **0 new vault commits** in the 2026-08-13T18:08Z → 2026-08-15T18:07Z 48-hour window; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity across both the 2026-08-13 and 2026-08-15 fetches. **No new untracked vault files** appeared in the 24-hour window — the untracked file set is unchanged from the 2026-08-13 fetch (23 untracked files, including the still-untracked `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-new-Review/-subfolder file, 8 × `02-Clients/Agents/区域-2026-0807.md` distributor-rebuild files, `__pycache__/...pyc` build noise, the `文悦精读流水线.yml` v1/v2/v3/v4/v5-clean variants, etc.). **Wiki HEAD** bumped from `1737454` (2026-08-13) to **`2507925e27b83b4f9d2e6f3b9c939d081a90f9f2`** (2026-08-15T02:31 +0800); **4 new wiki-side commits** in the 48-hour window — `021e929` chore: daily update 2026-08-14 (2026-08-14T02:18) + `6258717` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-14, 2026-08-14T02:30) + `173b58c` chore: daily update 2026-08-15 (2026-08-15T02:00, added OKF frontmatter to nocodb.md / ragflow.md / seafile.md / wikijs.md) + `2507925` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-15, 2026-08-15T02:31). **One operational issue surfaced**: the `2507925` 2026-08-15 sources-sync committed **empty count values** for NocoDB / SeaFile / Wiki.js / RAGFlow (NocoDB 6614 → 0 records, Wiki.js 83 → 0 unique pages, RAGFlow landing 200 → 000) — the on-disk source configs are unaffected (NocoDB / Wiki.js / RAGFlow backends at 10.10.10.254 are unchanged); this is a wiki-side CRON issue with the auto-source-sync job, not a connector config issue. Data is recoverable from `git show 1737454:sources/nocodb.md` etc. for any future recovery commit; the synthesis layer (themes / commitments / open-questions / personal-logistics) is independent of the source-page counters and is not affected. **10 uncommitted wiki-side edits** in working tree (carryover from the prior HN-1 2026-08-13 + HN-1 2026-08-15 + web-search-1 2026-08-15 + this git-repo-1 2026-08-15 runs — `.last-update.json` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md`; pending the next CLI orchestration commit). Wiki edits this run: (a) `/sources/git-repo.md` — refreshed frontmatter HEAD pointers (vault HEAD → `297f106d` unchanged, wiki HEAD `1737454` → `2507925`, tags + `2026-08-15`, timestamp → `2026-08-15T18:07:49Z`), refreshed the Connector / State section to the new `2026-08-15T18-07-49-711Z` raw manifest, refreshed `## obsidian-vault — working-tree status` heading + body to 2026-08-15 (0 new commits, no new untracked files; `Review/zhou2023_computer_vision_microfluidics.md` carries forward as still-untracked), refreshed `## openwiki-wiki — working-tree status` heading + body to 2026-08-15 (4 new wiki commits + 10 uncommitted files + the count-data wipe surfaced in the Notable-entity section), refreshed the Recent-commits table with the 4 new wiki commits on top of the prior 2026-08-13 cluster, refreshed the Summary-of-last-24-hours table with the 2026-08-13T18:08Z → 2026-08-15T18:07Z window data (0 vault commits / 4 wiki commits / 10 uncommitted wiki files / operational issue row), refreshed the Notable-entity section to add a "2026-08-15 sources-sync bug" entry (count-data wipe + recovery path + wiki-synthesis independence) + carry-forward note on the `Review/` subfolder entry, refreshed the Synthesis-policy section to add this run's delta summary + the operational-issue observation; (b) `/themes/05-robin-research.md` — vault-snapshot metadata refreshed (fetch timestamp → `2026-08-15T18:07:49Z`, raw-manifest path → the new `2026-08-15T18-07-49-711Z/manifest.json`); the vault HEAD pointer stays `297f106d` (unchanged across both 2026-08-13 and 2026-08-15 fetches); (c) `/quickstart.md` — added this "Latest update — git-repo-1 (2026-08-15T18:07Z)" paragraph; updated the Backlog git-repo entry to reflect the new wiki HEAD `2507925` + 4 new wiki commits + 10 uncommitted files + the operational issue note. **No `/themes.md` row change, no commitment row, no open-question row, no personal-logistics item** — the vault delta is empty (no new commits, no new untracked files) and the synthesis layer is independent of the source-page counters. Prior run was **web-search-1 attempted 2026-08-15 skipped** (fourth consecutive skip on the same code path) — see next paragraph. + +**Latest update — web-search-1 attempted 2026-08-15 skipped.** One source-specific update run for `web-search-1` (Web Search / Tavily) per the source-specific instruction "Track CelVivo / 3Brain / Cellink / organoid news from web (NOTE: needs TAVILY_API_KEY, currently empty)". The deterministic pull was **skipped**: `web-search-1` is not enabled in the runtime registry and `TAVILY_API_KEY` is empty, so no Tavily request was made and no raw data files were written. This is the **fourth consecutive skip** on the same code path (after 2026-08-08 + 2026-08-10 + 2026-08-12); the latest successful Tavily pull remains 2026-08-03 18:08 UTC. No new CelVivo / 3Brain / Cellink / organoid findings were available for synthesis; no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md` from this source attempt. Discord between on-disk `~/.openwiki/connectors/web-search/config.json` (which shows `enabled: true` + 6 Chinese queries) and the runtime registry (still reports the connector as disabled) is the same operational issue noted on the 2026-08-08 / 2026-08-10 / 2026-08-12 runs — recorded for traceability only, not a wiki-synthesis concern. Wiki edits this run: (a) `/sources/web-search.md` — added a "2026-08-15 attempted update — skipped" section ahead of the 2026-08-12 entry, following the established 5-field structure (Status / Authentication / Coverage / Synthesis / Operational note); updated the header line to mention the fourth skip; added `2026-08-15` to the `tags` list; (b) `/quickstart.md` — added this "Latest update — web-search-1 attempted 2026-08-15 skipped" paragraph; updated the Web Search connector row in "Current status" and "Adding sources" to reflect the 4-entry skip streak; updated the Backlog web-search entry likewise. **No new theme row, no commitment row, no open-question row, no personal-logistics item** — the synthesis layer is unchanged because the connector produced no new evidence. Prior run was **hackernews-1 update (2026-08-15T18:00Z)** — see next paragraph for the Auto-research with codex / Working with AI as Leadership flag-for-traceability notes. + +**Latest update — hackernews-1 (2026-08-15T18:00Z).** One source-specific update run for `hackernews-1` (Hacker News — LLM-agent topic set) per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=hackernews` and wrote raw data at `~/.openwiki/connectors/hackernews/raw/2026-08-15T18-00-02-001Z/hackernews-results.json`. 2 feeds (`top` 30 IDs / 19 resolved + `best` 30 IDs / 4 resolved) → **19 unique items** (4 overlap: `49303202` Firefox uBlock Origin, `49304447` Going Dark law enforcement hacking, `49307592` "The other Sean Byrne doesn't exist", `49309549` Auto-research with codex 232x Faster Kernel). 6 search queries (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`) returned **zero hits across all six** — all six Algolia queries returned `nbHits=null`. The "no material HN footprint for the 4 vendor lines" finding continues to hold — this is the **fourth pull since 2026-08-07 to have a fully-zero Algolia lane** (after the 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 pulls; the 2026-08-10 + 2026-08-12 pulls had Algolia hits that were all string-collision noise rather than fully-zero); Tavily (web-search) remains the productive lane for vendor news. **One high-engagement Robin-stack-adjacent in the 19 unique top+best items** — **`49309549` Auto-research with codex: How I achieved a 232x Faster Kernel** (275 pts, 75 cmts, top+best, sankalp.bearblog.dev, by `tosh`) — a personal-blog essay on using Codex (OpenAI coding agent) for autonomous GPU-kernel optimization. Codex is on Robin's stack as the named fallback agent surface per [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Codex CLI (fallback)", and the "auto-research" framing directly speaks to how the broader Codex community is using Codex for autonomous optimization. **Adjacent-not-promoted** per the established scope rule that Codex-wrapper / TUI / usage changes stay adjacent unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself (per the 2026-07-27 / 2026-07-30 / 2026-08-03 / 2026-08-10 / 2026-08-12 / 2026-08-13 traceability entries in `/sources/hackernews.md`). Six additional flag-for-traceability items stay adjacent-not-promoted under the existing scope discipline: **`49309451` Working with AI Feels More Like Leadership Than Coding** (151 pts, 109 cmts, top — AI-coding-agent essay, off-scope); **`49310682` First At-Home Test for Infected Ticks** (111 pts, 42 cmts, top — Smithsonian, infectious-disease diagnostics, outside Robin's 4 application domains); **`49311651` Semaglutide linked to 26% lower 5-year predicted dementia risk** (95 pts, 59 cmts, top — Alzheimer's & Dementia journal, clinical neurology / pharmacology, outside Robin's 4 application domains); **`49312008` A controversial Alzheimer's surgery is said to reverse symptoms** (62 pts, 17 cmts, top — Nature news, clinical neurology, outside Robin's 4 application domains); **`49310495` Yadda 3.0.0: BDD in the Age of AI Agents** (37 pts, 16 cmts, top — BDD testing framework, off-scope); **`49310362` Could a computer scientist build a brain?** (32 pts, 19 cmts, top — computer-science neuroscience essay, outside Robin's 4 application domains). **Key call**: this pull produces **no directly-relevant item for any `/themes.md` row** — the closest items either (a) fall outside Robin's 4 application domains (clinical neurology / pharmacology / infectious disease diagnostics / computer-science neuroscience) and stay off the `class-organoid-3d-bioprinting` watchlist per the "domain-anchored only" scope rule, or (b) sit on the AI-agent / Codex-usage lane where the established scope rule keeps Codex surface / TUI / usage changes adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself. The `class-organoid-3d-bioprinting` row stays at Last seen 2026-08-12 (no organoid item); the `agent-memory-architecture` row stays at Last seen 2026-08-13 (no OKF / MCP Memory item); the `MiniMax-m3` row stays at Last seen 2026-08-03 (no MiniMax model release); the `hermes-agent-v0-19-quicksilver` row stays at Last seen 2026-08-03 (no Hermes Agent release); the `openwiki-brand` watchlist row stays at Last seen 2026-07-16 (no positive `openwiki` hits). The HN lane's stable role is now "high-engagement agent-stack adjacents (Codex / DeepSeek / Muse Glimmer / MCP / Docker Sandboxes / Claude Code) + low-engagement application-domain watchlist items (organoid / neuroscience / Wired features)" rather than vendor-direct signals. Wiki edits this run: (a) `/sources/hackernews.md` — added new "Latest update — 2026-08-15 18:00 UTC" section ahead of the 2026-08-13 entry; demoted 2026-08-13 from "Latest" to a regular "Update" section; updated Connector section with the new raw dump path (`2026-08-15T18-00-02-001Z/hackernews-results.json`) and the new latest-fetch timestamp (`2026-08-15T18:00:28Z`); added a "Flag-for-traceability: Auto-research with codex, Working with AI as Leadership, Yadda BDD for AI agents — adjacent, off-scope" callout section; updated `tags` to include `2026-08-15`. **No `/themes.md` row change, no commitment row, no open-question row, no personal-logistics item** — the only synthesis-layer change is recording the fourth consecutive fully-zero Algolia lane streak in `/sources/hackernews.md`. Prior run was **git-repo-1 update (2026-08-13T18:08Z)** — see next paragraph. + **Latest update — git-repo-1 (2026-08-13T18:08Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-08-13T18-08-25-206Z/manifest.json`. **Vault HEAD** unchanged at `297f106d2b137af3480261052ff080cbc48d5b48` (same as the 2026-08-12 fetch) — **0 new vault commits** in the 24-hour window; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity. **1 new untracked file** appeared in the working tree: `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — **first entry in a new `Review/` subfolder** under `04-Literature/Deep-Reads/` (Zhou 2023 computer vision + microfluidics — Robin deep-read in progress, uncommitted). Also new untracked: `__pycache__/literature_deepread_v6.cpython-312.pyc` (Python build noise, ignored). **Wiki HEAD** bumped from `c57ead4` (2026-08-12) to **`1737454ad1b4f06ff9958cc9256c0c611262e44a`** (2026-08-13); **2 new wiki-side commits** — `8ddc6d9` chore: daily update 2026-08-13 (this committed the synthesis edits from the HN-1 2026-08-13 run: MCP Memory using OKF / agent-memory-architecture refresh + 1 new theme row extension on `/themes.md`) + `1737454` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-13). **8 uncommitted wiki-side edits** in working tree (carryover from the HN-1 2026-08-13 synthesis edits that landed between the `1737454` commit and this fetch — `.last-update.json` + `quickstart.md` + `sources/hackernews.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` + `themes.md`; pending the next CLI orchestration commit). Wiki edits this run: (a) `/sources/git-repo.md` — refreshed frontmatter HEAD pointers (vault HEAD → `297f106d` unchanged, wiki HEAD → `1737454`, tags + `2026-08-13`), refreshed Connector / State section to the new `2026-08-13T18-08-25-206Z` raw manifest, updated `## obsidian-vault — working-tree status (2026-08-13)` to flag 0 new vault commits + the 2 new untracked files (Review/ zhou2023 + __pycache__), added the new files to the working-tree status table, refreshed the Summary-of-last-24-hours table with the 2026-08-12T18:08Z → 2026-08-13T18:08Z window data (no vault commits, 1 new untracked Review/ file, 2 new wiki commits), refreshed the Notable-entity section to add a `Review/` subfolder expansion entry (first review-type subfolder in the deep-read tree), refreshed the Synthesis-policy section to note this run is **a daily-cycle follow-up (no net-new external evidence)**; (b) `/themes/05-robin-research.md` — vault snapshot metadata refreshed (fetch timestamp → 2026-08-13T18:08:25Z, working-tree state 19 → 25 untracked files, raw manifest path updated), added a new `Review/` row to the deep-read breakdown table (1 file, `zhou2023_computer_vision_microfluidics.md`, marked as **untracked** — only counts once committed), updated the 30-day research output table with a new "Subfolder expansion (uncommitted)" row + extended the by-vendor table accordingly, ER-diagram entity label updated (deep-reads `~1,204` → `~1,205`), surrounding narrative extended with the "Robin appears to be expanding the folder taxonomy to separate review-type papers from original-research papers; whether this is a one-off subfolder or the start of a recurring folder pattern is a watchlist item for the next git-repo fetch" finding. **No `/themes.md` row change, no commitment row, no open-question row, no personal-logistics item** — the Review/ subfolder expansion is a single-file structural event, not a recurring signal; the next git-repo fetch will tell whether more papers land in this subfolder or it stays a single-entry watchlist. Prior run was **hackernews-1 update (2026-08-13T18:00Z)** — see next paragraph for the MCP Memory using OKF / agent-memory-architecture refresh detail. **Latest update — hackernews-1 (2026-08-13T18:00Z).** One source-specific update run for `hackernews-1` (Hacker News — LLM-agent topic set) per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=hackernews` and wrote raw data at `~/.openwiki/connectors/hackernews/raw/2026-08-13T18-00-02-662Z/hackernews-results.json`. 2 feeds (`top` 25 + `best` 7) → **27 unique items** (5 overlap: `49285244` DeepSeek Harness developer preview, `49281916` Codex in ChatGPT desktop app for Linux preview, `49284774` Deutsche Bank yuan clearing, `49286341` Spaghettifying DRAM, `49285982` Gloomberb). 6 search queries (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`) returned **zero hits across all six** — all six Algolia queries returned `nbHits=0`. The "no material HN footprint for the 4 vendor lines" finding continues to hold (this is the third pull since 2026-08-07 to have a fully-zero Algolia lane — the prior 2026-08-08 03:15 + 2026-08-08 18:00 pulls were the previous two; the 2026-08-10 + 2026-08-12 pulls had Algolia hits that were all string-collision noise); Tavily (web-search) remains the productive lane for vendor news. **One directly-relevant adjacent** in the 27 unique top+best items — **`49286073` MCP Memory – Fast Agent Memory Using Google's OKF and SQLite FTS5** (46 pts, 22 cmts, Show HN, github.com/fellowgeek/mcp-memory) — the **first HN item since the 2026-07-16 `langchain-ai/openwiki` brand signal to explicitly name Google's OKF frontmatter** (the same schema OpenWiki uses at `/index.md` frontmatter `okf_version: "0.1"` and per concept page). Refreshes `agent-memory-architecture` row on `/themes.md` Last seen → 2026-08-13 (Evidence count → 16+, plus a new MCP Memory / OKF anchor in the row description and Evidence cell). Six flag-for-traceability items stay adjacent-not-promoted under the existing scope discipline ("open-weight AI never earns a `themes.md` row" + workflow-tooling priority LOW): **`49285244` DeepSeek Harness developer preview** (422 pts top+best, 197 cmts — 4th DeepSeek-vs-MiniMax observation in 10 days, after DeepSeek V4 Flash 0731 + Tavily benchlm.ai + DeepSeek V4 Pro 0813; open-weight agent runtime, off-scope); **`49281916` Codex in ChatGPT desktop app for Linux** (394 pts top+best, 269 cmts — Codex in ChatGPT Linux desktop app preview; Codex is on Robin's stack but the established scope rule keeps Codex surface changes adjacent-not-promoted); **`49289112` Gemini 3.7 Flash** (134 pts top, 84 cmts — off-scope); **`49285327` Choosing an AI model: one prompt, 11 models, different results** (115 pts top, 56 cmts — Netlify comparison, off-scope); **`49288889` Mistral OCR 4.1** (40 pts top, 6 cmts — off-scope); **`49283063` Launch HN: Bullet (YC S26) – A Faster Coding Agent** (17 pts top, 19 cmts — YC S26 launch, off-scope). **Key call**: MCP Memory using OKF (`49286073`) is the first HN-side corroboration of the OKF+memory schema that OpenWiki has been using since at least 2026-07-16. The 46-pt engagement is moderate (above the 1-2-pt adjacent items in the 2026-08-03 sweep, below the 100+ pt threshold for high-engagement vendor releases) — but the **direct OKF reference + MCP-server delivery channel + Show HN surfacing** makes it a stronger trigger for `agent-memory-architecture` Last-seen refresh than the prior 2-pt `49156055` verginglabs Markdown-wiki post (2026-08-03) or the 1-pt `49159148` governed/approval-gated-memory post (2026-08-03). No new theme row, no new commitment row, no new open-question row, no personal-logistics item. Wiki edits this run: (a) `/sources/hackernews.md` — added new "Latest update — 2026-08-13 18:00 UTC" section ahead of the 2026-08-12 entry; demoted 2026-08-12 from "Latest" to a regular "Update" section; updated Connector section with the new raw dump path (`2026-08-13T18-00-02-662Z/hackernews-results.json`) and the new latest-fetch timestamp (`2026-08-13T18:00:30Z`); added an "agent-memory-architecture (refreshed this run)" callout section for `49286073`; added a "Flag-for-traceability: DeepSeek Harness, Codex on Linux desktop, Gemini 3.7 Flash, Mistral OCR" callout section; updated `tags` to include `2026-08-13`; (b) `/themes.md` — refreshed `agent-memory-architecture` row: Last seen → 2026-08-13, Evidence count → 16+, row description extended with the MCP Memory / OKF evidence + Evidence cell gained a new HN anchor; all other theme rows unchanged; (c) `/quickstart.md` — added this "Latest update — hackernews-1 (2026-08-13T18:00Z)" paragraph ahead of the 2026-08-12 paragraph; updated the Backlog HN section's last-refreshed date from 2026-08-12 to 2026-08-13. Prior run was **web-search-1 attempted 2026-08-12 skipped** (third consecutive skip due to runtime registry not enabled + `TAVILY_API_KEY` empty); the latest successful Tavily pull remains 2026-08-03 18:08 UTC, and no new CelVivo / 3Brain / Cellink findings were synthesized from this skip. Prior successful run was **git-repo-1 update (2026-08-12T18:08Z)** — see second-paragraph detail in the prior-run history below. @@ -71,9 +78,9 @@ Deferred until Robin configures connectors or asks for specific documentation: - **Slack evidence index** — `/sources/slack.md` (no Slack connector configured yet) - **Notion evidence index** — `/sources/notion.md` (no Notion MCP configured yet) - **X / Twitter evidence index** — `/sources/x.md` (no X connector configured yet) -- **Hacker News evidence index** — `/sources/hackernews.md` (active; last refreshed 2026-08-13 18:00 UTC — source-specific LLM-agent topic set (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`); **third pull since 2026-08-07 to have a fully-zero Algolia lane** (after 2026-08-08 03:15 + 2026-08-08 18:00 — the 2026-08-10 and 2026-08-12 pulls had Algolia hits that were all string-collision noise) — vendor-anchored footprint remains null on the HN lane and Tavily (web-search) remains the productive lane; **one directly-relevant adjacent surfaced this pull: `49286073` MCP Memory using Google's OKF** (46 pts, 22 cmts, Show HN, github.com/fellowgeek/mcp-memory — first HN item since the 2026-07-16 `langchain-ai/openwiki` brand signal to explicitly name the OKF frontmatter that OpenWiki uses) — refreshing Last seen on the `/themes.md` `agent-memory-architecture` row → 2026-08-13 (Evidence count → 16+, plus a new MCP Memory / OKF anchor in the row description and Evidence cell); six flag-for-traceability items surfaced this run (all adjacent-not-promoted under existing scope discipline): **DeepSeek Harness developer preview** (422 pts top+best, 197 cmts — 4th DeepSeek-vs-MiniMax observation in 10 days, open-weight agent runtime, off-scope), **Codex in ChatGPT desktop app for Linux** (394 pts top+best, 269 cmts — Codex is on Robin's stack but the established scope rule keeps Codex surface changes adjacent-not-promoted), **Gemini 3.7 Flash** (134 pts top, off-scope), **Choosing an AI model: one prompt, 11 models** (115 pts top, off-scope), **Mistral OCR 4.1** (40 pts top, off-scope), **Launch HN: Bullet (YC S26)** (17 pts top, off-scope) — see HN source page) -- **Web search evidence index** — `/sources/web-search.md` (active; last successful pull 2026-08-03 18:08 UTC — first pull after the 3-day outage streak; CELLINK × Volumetric new Lumen X + 3Brain Utrecht Summer School + CelVivo ClinoStar 2 / Thailand Lab 2026 surfaced, see source page; 2026-08-08, 2026-08-10, and 2026-08-12 update attempts skipped — connector not enabled in runtime registry, `TAVILY_API_KEY` missing; disk config shows `enabled: true` + 6 Chinese queries but the runtime registry disagrees — operational concern, not a wiki-synthesis concern) -- **Git repo evidence index** — `/sources/git-repo.md` (active; last refreshed 2026-08-13 18:08 UTC — covers Robin's Obsidian vault (HEAD `297f106d` 2026-08-12, **unchanged this fetch** — 0 new vault commits in the 24-hour window) + OpenWiki wiki (HEAD `1737454` 2026-08-13, 2 new wiki commits since 2026-08-12: `8ddc6d9` daily update 2026-08-13 + `1737454` sources-sync 2026-08-13); 13 commits since 2026-08-03 fetch including the **2026-08-12 Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3 轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型; Wiki.js Id=1716, NocoDB Id=770); **25 untracked files** including 8 new `02-Clients/Agents/区域-2026-0807.md` distributors-rebuild + `_known_associations.md` association index + **the first entry in the new `Review/` subfolder** (`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — Zhou 2023 computer vision + microfluidics, Robin deep-read in progress, uncommitted) + `__pycache__/...pyc` Python build noise; wiki-side carries 8 uncommitted synthesis-layer edits from the prior HN-1 2026-08-13 run) +- **Hacker News evidence index** — `/sources/hackernews.md` (active; last refreshed 2026-08-15 18:00 UTC — source-specific LLM-agent topic set (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`); **fourth pull since 2026-08-07 to have a fully-zero Algolia lane** (after 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 — the 2026-08-10 and 2026-08-12 pulls had Algolia hits that were all string-collision noise rather than fully-zero) — vendor-anchored footprint remains null on the HN lane and Tavily (web-search) remains the productive lane; **one high-engagement Robin-stack-adjacent surfaced this pull: `49309549` Auto-research with codex: How I achieved a 232x Faster Kernel** (275 pts, 75 cmts, top+best, sankalp.bearblog.dev, by `tosh` — same submitter as the 2026-08-08 03:15 DeepSeek V4 Flash 0731 entry, but the items themselves are unrelated) — a personal-blog essay on using Codex (OpenAI coding agent) for autonomous GPU-kernel optimization. Codex is on Robin's stack as the named fallback agent surface per `/themes/03-ai-agents.md` § "Codex CLI (fallback)", and the "auto-research" framing directly speaks to how the broader Codex community is using Codex for autonomous optimization. **Adjacent-not-promoted** per the established scope rule that Codex-wrapper / TUI / usage changes stay adjacent unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself — so no `/themes.md` row Last-seen refresh; six additional flag-for-traceability items surfaced this run (all adjacent-not-promoted under existing scope discipline): **Working with AI Feels More Like Leadership Than Coding** (151 pts top, 109 cmts — AI-coding-agent essay, off-scope), **First At-Home Test for Infected Ticks** (111 pts top, 42 cmts — Smithsonian, infectious-disease diagnostics, outside Robin's 4 application domains), **Semaglutide linked to 26% lower 5-year predicted dementia risk** (95 pts top, 59 cmts — Alzheimer's & Dementia journal, clinical neurology / pharmacology, outside Robin's 4 application domains), **A controversial Alzheimer's surgery is said to reverse symptoms** (62 pts top, 17 cmts — Nature news, clinical neurology, outside Robin's 4 application domains), **Yadda 3.0.0: BDD in the Age of AI Agents** (37 pts top, 16 cmts — BDD testing framework, off-scope), **Could a computer scientist build a brain?** (32 pts top, 19 cmts — computer-science neuroscience essay, outside Robin's 4 application domains) — see HN source page) +- **Web search evidence index** — `/sources/web-search.md` (active; last successful pull 2026-08-03 18:08 UTC — first pull after the 3-day outage streak; CELLINK × Volumetric new Lumen X + 3Brain Utrecht Summer School + CelVivo ClinoStar 2 / Thailand Lab 2026 surfaced, see source page; 2026-08-08, 2026-08-10, 2026-08-12, and 2026-08-15 update attempts skipped — connector not enabled in runtime registry, `TAVILY_API_KEY` missing; disk config shows `enabled: true` + 6 Chinese queries but the runtime registry disagrees — operational concern, not a wiki-synthesis concern) +- **Git repo evidence index** — `/sources/git-repo.md` (active; last refreshed 2026-08-15 18:07 UTC — covers Robin's Obsidian vault (HEAD `297f106d` 2026-08-12, **unchanged across both the 2026-08-13 and 2026-08-15 fetches** — 0 new vault commits in the 2026-08-13T18:08Z → 2026-08-15T18:07Z 48-hour window) + OpenWiki wiki (HEAD `2507925` 2026-08-15, **4 new wiki commits since 2026-08-13**: `021e929` daily update 2026-08-14 + `6258717` sources-sync 2026-08-14 + `173b58c` daily update 2026-08-15 + `2507925` sources-sync 2026-08-15); 13 vault commits since 2026-08-03 fetch including the **2026-08-12 Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3 轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型; Wiki.js Id=1716, NocoDB Id=770); **23 untracked vault files** unchanged from the 2026-08-13 fetch (no new untracked files in the 24-hour window) — including 8 × `02-Clients/Agents/区域-2026-0807.md` distributors-rebuild + `_known_associations.md` association index + **the first entry in the new `Review/` subfolder** (`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — Zhou 2023 computer vision + microfluidics, Robin deep-read in progress, still-uncommitted at the 2026-08-15 fetch) + `__pycache__/...pyc` Python build noise; wiki-side carries **10 uncommitted synthesis-layer edits** accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + web-search-1 2026-08-15 + this git-repo-1 2026-08-15 runs; **one operational issue surfaced this run** — the `2507925` 2026-08-15 sources-sync committed empty count values for NocoDB / SeaFile / Wiki.js / RAGFlow (NocoDB 6614 → 0 records, Wiki.js 83 → 0 unique pages, RAGFlow landing 200 → 000); the on-disk source configs are unaffected; data is recoverable from `git show 1737454:sources/nocodb.md` etc. — recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page; the synthesis layer (themes / commitments / open-questions / personal-logistics) is independent of the source-page counters and is not affected) - **Project / people / company pages** — only created when durable entities emerge from ingested data These are intentionally blank until there is real evidence to put in them. Populating them with placeholders would dilute the synthesis layer.. \ No newline at end of file diff --git a/sources/README.md b/sources/README.md index 6830b63..681572e 100644 --- a/sources/README.md +++ b/sources/README.md @@ -14,8 +14,8 @@ Per-connector evidence indexes. Each connector gets its own page (for example `g | Connector | Page | Status | | --- | --- | --- | | Hacker News (`hackernews-1`, LLM-agent topics) | [/sources/hackernews.md](/sources/hackernews.md) | active | -| Git repo (`git-repo-1`, Obsidian vault + OpenWiki wiki) | [/sources/git-repo.md](/sources/git-repo.md) | active (last 2026-08-08 18:11 UTC) | -| Web Search (`web-search-1`, Tavily) | [/sources/web-search.md](/sources/web-search.md) | active (latest pull 2026-08-03; 2026-08-08 and 2026-08-10 update attempts skipped — connector not enabled, `TAVILY_API_KEY` missing) | +| Git repo (`git-repo-1`, Obsidian vault + OpenWiki wiki) | [/sources/git-repo.md](/sources/git-repo.md) | active (last 2026-08-15 18:07 UTC) | +| Web Search (`web-search-1`, Tavily) | [/sources/web-search.md](/sources/web-search.md) | active (latest pull 2026-08-03; 2026-08-08, 2026-08-10, 2026-08-12, and 2026-08-15 update attempts skipped — connector not enabled, `TAVILY_API_KEY` missing) | Additional connectors appear here automatically once they are authenticated and ingested at least once. @@ -27,9 +27,9 @@ Additional connectors appear here automatically once they are authenticated and | Slack | not configured | `openwiki auth slack` | Needs `search:read` for definitive self-message search; otherwise falls back to recent conversations. | | Notion | not configured | Notion MCP credentials | Discovery via `openwiki_list_mcp_tools`; do not guess tool names. | | X / Twitter | not configured | `OPENWIKI_X_ACCESS_TOKEN` via `openwiki auth x` | Streams: `home_timeline`, `user_posts`, `mentions`, `bookmarks`, `list_posts`. | -| Web Search | **active** (`web-search-1`) | `TAVILY_API_KEY` (currently empty) | Tavily via LangChain; reads configured queries. Latest successful pull 2026-08-03 18:08 UTC; the 2026-08-08 update was skipped because the connector was not enabled. Evidence at [/sources/web-search.md](/sources/web-search.md). | +| Web Search | **active** (`web-search-1`) | `TAVILY_API_KEY` (currently empty) | Tavily via LangChain; reads configured queries. Latest successful pull 2026-08-03 18:08 UTC; the 2026-08-08, 2026-08-10, 2026-08-12, and 2026-08-15 update attempts were skipped because the connector was not enabled in the runtime registry. Evidence at [/sources/web-search.md](/sources/web-search.md). | | Hacker News | **active** (`hackernews-1`) | _(public, no auth)_ | Public feeds (`top`, `new`, `best`) + Algolia HN search queries. Source-specific query set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` (LLM-agent topics per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories"). Last successful pull 2026-08-10 18:00 UTC — fourth consecutive "no promotable hits" pull under the 6-query set (empty-pulls-on-vendor-queries is normal cadence, not an outage). Evidence at [/sources/hackernews.md](/sources/hackernews.md). | -| Git repo | **active** (`git-repo-1`) | local repo path | Local Obsidian vault at `/home/ldw/workspace` + OpenWiki wiki at `/home/ldw/.openwiki/wiki` (two configured repos per `~/.openwiki/connectors/git-repo/config.json`). Writes compact manifest; repo itself is source of truth. Evidence at [/sources/git-repo.md](/sources/git-repo.md). Last updated 2026-08-08 18:11 UTC. | +| Git repo | **active** (`git-repo-1`) | local repo path | Local Obsidian vault at `/home/ldw/workspace` + OpenWiki wiki at `/home/ldw/.openwiki/wiki` (two configured repos per `~/.openwiki/connectors/git-repo/config.json`). Writes compact manifest; repo itself is source of truth. Evidence at [/sources/git-repo.md](/sources/git-repo.md). Last updated 2026-08-15 18:07 UTC. | ## How new source pages get created diff --git a/sources/git-repo.md b/sources/git-repo.md index ebc1663..da860f0 100644 --- a/sources/git-repo.md +++ b/sources/git-repo.md @@ -1,10 +1,10 @@ --- type: "Reference" title: "Git repo — evidence index (Obsidian vault, Robin)" -description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 1737454, 2026-08-13). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here." +description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12, unchanged across the 2026-08-13 / 2026-08-15 fetches) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 2507925, 2026-08-15). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here." resource: "~/.openwiki/connectors/git-repo/config.json" -tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-13] -timestamp: 2026-08-13T18:08:25Z +tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-15, 2026-08-13] +timestamp: 2026-08-15T18:07:49Z --- # Git repo — evidence index (Obsidian vault + OpenWiki wiki) @@ -23,39 +23,52 @@ help locate things in the vault, not summarize their content. - **Configured repos:** - `obsidian-vault` → `/home/ldw/workspace` (Robin Obsidian vault, on `main`, HEAD `297f106d2b137af3480261052ff080cbc48d5b48` as of - 2026-08-12 — unchanged this fetch). + 2026-08-12 — unchanged across the 2026-08-13 and 2026-08-15 fetches, + 0 new vault commits in either 24-hour window). - `openwiki-wiki` → `/home/ldw/.openwiki/wiki` (the OpenWiki knowledge - base itself, on `main`, HEAD `1737454ad1b4f06ff9958cc9256c0c611262e44a` - as of 2026-08-13). + base itself, on `main`, HEAD `2507925e27b83b4f9d2e6f3b9c939d081a90f9f2` + as of 2026-08-15T02:31 +0800 — 4 new wiki-side commits in the + 2026-08-14T18:08Z → 2026-08-15T18:07Z window: `021e929` daily + update 2026-08-14 + `6258717` sources-sync 2026-08-14 + `173b58c` + daily update 2026-08-15 + `2507925` sources-sync 2026-08-15). - **Auth:** local paths only — no remote, no credentials. -- **Latest fetch:** `2026-08-13T18:08:25Z` (raw manifest - `~/.openwiki/connectors/git-repo/raw/2026-08-13T18-08-25-206Z/manifest.json`). +- **Latest fetch:** `2026-08-15T18:07:49Z` (raw manifest + `~/.openwiki/connectors/git-repo/raw/2026-08-15T18-07-49-711Z/manifest.json`). - **Source config:** `~/.openwiki/connectors/git-repo/config.json` - **State:** `~/.openwiki/connectors/git-repo/state.json` records - `latestIds` per repo; the 2026-08-13 fetch observed vault HEAD + `latestIds` per repo; the 2026-08-15 fetch observed vault HEAD unchanged at `297f106d` (no new vault commits in the 24-hour window — the 2026-08-12 Liang 2026 cluster of 4 commits is still the most - recent vault activity) and bumped `openwiki-wiki` from `c57ead4` - (2026-08-12) to `1737454` (2026-08-13, 2 new commits: `8ddc6d9` - daily update 2026-08-13 + `1737454` sources-sync 2026-08-13). + recent vault activity, and the 2026-08-13 cluster of 3 frontmatter-hygiene + + MOC-discipline commits + the 2026-08-11 cluster of 4 PMID deep-read + commits are all already merged into `297f106d`) and bumped + `openwiki-wiki` from `1737454` (2026-08-13) to `2507925` (2026-08-15, + 4 new commits — `021e929` + `6258717` + `173b58c` + `2507925`). -## obsidian-vault — working-tree status (2026-08-13) +## obsidian-vault — working-tree status (2026-08-15) - **Branch:** `main` - **HEAD:** `297f106d2b137af3480261052ff080cbc48d5b48` (vault HEAD - **unchanged** since the 2026-08-12 fetch — 0 new commits in the - 24-hour window). + **unchanged** across the 2026-08-13 and 2026-08-15 fetches — 0 new + commits in either 24-hour window; the 2026-08-12 Liang 2026 cluster of + 4 commits remains the most recent vault activity). - **Ahead of origin/main:** 13 commits new since 2026-08-03 fetch (same - as the 2026-08-12 fetch — the 2026-08-12 Liang 2026 cluster of 4 + count as the 2026-08-13 fetch — the 2026-08-12 Liang 2026 cluster of 4 commits is still the most recent vault activity). -- **Dirty:** yes — the 2026-08-12 untracked file set extended by **2 - new untracked files**: (a) `__pycache__/literature_deepread_v6.cpython-312.pyc` - — Python compiled cache file from running `literature_deepread_v6.py`, - build noise, ignored; (b) **`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`** — - **first entry in a new `Review/` subfolder** under - `04-Literature/Deep-Reads/` (the file is **untracked** — Robin has - not yet committed it). This is structurally meaningful — see the - Notable-entity section below. +- **Dirty:** yes — the untracked file set is **unchanged** from the + 2026-08-13 fetch (no new untracked files appeared in the 2026-08-15 + 24-hour window). The set is: 8 × `02-Clients/Agents/区域-2026-0807.md` + distributor-rebuild files (per the 2026-08-07 Hermes hook 4 sweep) + + the existing 15 working-folder files (Parfitt 2024 DJ1 LOF midbrain + + Liu2026 / Miao2025 v2 / Miao2025 vascularized / Microbioreactor 2026 / + `__pycache__/literature_deepread_v6.cpython-312.pyc` / `dify精读进度-20260805.md` + / `literature_deepread_v6.py` / `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` + / `obsidian-vault/rustdesk-selfhosted-2026-08-05.md` / + `retinal_organoid_deep_read_2026-08-07.md` / `文悦精读流水线.yml` + v2/v3/v4/v5-clean + variants). The **`Review/zhou2023_computer_vision_microfluidics.md` + first entry in the new `Review/` subfolder** is still **untracked** + (Robin has not yet committed it) — the structural signal carried + forward from the 2026-08-13 fetch. - **Working-tree status (raw manifest, abbreviated):** | Status | Path | @@ -185,38 +198,64 @@ indexed on [`/sources/literature.md`](/sources/literature.md). The `1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran on the same paper. -## openwiki-wiki — working-tree status (2026-08-13) +## openwiki-wiki — working-tree status (2026-08-15) - **Branch:** `main` -- **HEAD:** `1737454ad1b4f06ff9958cc9256c0c611262e44a` (the +- **HEAD:** `2507925e27b83b4f9d2e6f3b9c939d081a90f9f2` (the `chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts - (sources-sync 2026-08-13)` commit recorded in this run's window). -- **Working-tree state:** 8 modified files (uncommitted — pending next - CLI orchestration). The dirty file set is the **synthesis-layer edits - from this same 24-hour window's prior run**: - - Hackernews-1 (2026-08-13T18:00Z, prior run) — MCP Memory using OKF - + DeepSeek Harness + Codex in ChatGPT Linux desktop refresh on - `/themes.md` `agent-memory-architecture` Last seen → 2026-08-13; - new "Latest update — 2026-08-13 18:00 UTC" section on - `/sources/hackernews.md`; updated quickstart / index status; tag - bump. The HN-1 synthesis edits landed in commit `8ddc6d9` (daily - update 2026-08-13) — but the residual 8 files in the dirty set - carry the in-progress edits from the current git-repo-1 run that - will land in the next CLI orchestration commit. - - Daily source-sync (2026-08-13) — `1737454` source-sync touched - `/sources/nocodb.md` / `/sources/ragflow.md` / `/sources/seafile.md` - / `/sources/wikijs.md` (4 source counters incremented). The other - 4 dirty files (`.last-update.json`, `quickstart.md`, - `sources/hackernews.md`, `themes.md`) carry the synthesis-layer - edits from the prior HN-1 run that landed *after* `1737454` - committed — they were touched during the HN-1 2026-08-13T18:00Z - synthesis pass and are pending the next CLI commit. + (sources-sync 2026-08-15)` commit — see Notable-entity § + "2026-08-15 sources-sync bug" for the count-data wipe this commit + carried into the source pages). +- **Working-tree state:** 10 modified files (uncommitted — pending next + CLI orchestration). The dirty file set is the **accumulated + synthesis-layer edits from the prior 3 runs in this same 24-hour + window** (HN-1 2026-08-13 + HN-1 2026-08-15 + web-search-1 2026-08-15 + + this git-repo-1 2026-08-15 run). The 10 dirty files are: + - `.last-update.json` — CLI metadata, will be updated when this run's + `status: complete` lands. + - `quickstart.md` — contains the accumulated "Latest update" + paragraphs from the prior HN-1 2026-08-15 + web-search-1 2026-08-15 + + git-repo-1 2026-08-13 runs, plus the new "Latest update — + git-repo-1 (2026-08-15T18:07Z)" paragraph this run is adding. + - `sources/README.md` — refreshed connector-roll table row for + web-search-1 (added the 2026-08-15 skip to the 4-entry skip streak) + + added frontmatter placeholders to nocodb.md / ragflow.md / + seafile.md / wikijs.md during the 2026-08-15 daily update. + - `sources/hackernews.md` — accumulated "Latest update — + 2026-08-15 18:00 UTC" section from the HN-1 2026-08-15 run (Auto-research + with codex 232x Faster Kernel flag-for-traceability + Working with AI + as Leadership + Yadda 3.0.0 BDD adjacent-off-scope callout section + + 4th consecutive fully-zero Algolia lane streak note) — landed in + uncommitted state during the HN-1 2026-08-15 run. + - `sources/index.md` — accumulated description-only edits for + nocodb.md / ragflow.md / seafile.md / wikijs.md (frontmatter was + re-applied by the 2026-08-15 daily update, description lines + removed since they no longer match the placeholder scheme). + - `sources/nocodb.md` — frontmatter re-added during the 2026-08-15 + daily update; **count data wiped** by `2507925` sources-sync + (NocoDB went from 6614 → 0 records). + - `sources/ragflow.md` — frontmatter re-added during the 2026-08-15 + daily update; **count data wiped** by `2507925` sources-sync + (landing went from 200 → 000). + - `sources/seafile.md` — frontmatter re-added during the 2026-08-15 + daily update; **count data wiped** by `2507925` sources-sync + (libraries table emptied). + - `sources/web-search.md` — accumulated "2026-08-15 attempted + update — skipped" section from the web-search-1 2026-08-15 run + (4th consecutive skip). + - `sources/wikijs.md` — frontmatter re-added during the 2026-08-15 + daily update; **count data wiped** by `2507925` sources-sync + (Wiki.js went from 83 → 0 unique pages; ID range 22..1704 → 0..0). - **Auth:** local path only — no remote, no credentials. ### Recent commits (latest first) | Date | Hash | Note | | --- | --- | --- | +| 2026-08-15 | `2507925` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-15) — **count-data wipe** (NocoDB 6614 → 0, Wiki.js 83 → 0, RAGFlow landing 200 → 000); see Notable-entity § "2026-08-15 sources-sync bug" | +| 2026-08-15 | `173b58c` | chore: daily update 2026-08-15 (added OKF frontmatter to nocodb.md / ragflow.md / seafile.md / wikijs.md) | +| 2026-08-14 | `6258717` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-14) | +| 2026-08-14 | `021e929` | chore: daily update 2026-08-14 | | 2026-08-13 | `1737454` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-13) | | 2026-08-13 | `8ddc6d9` | chore: daily update 2026-08-13 (commitment + quickstart + sources/literature + sources/web-search + themes/01-organoid-equipment + themes/05-robin-research from the HN-1 2026-08-13 synthesis pass) | | 2026-08-12 | `c57ead4` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-12) | @@ -255,30 +294,36 @@ on the same paper. | 2026-07-24 | `3102e96` | feat(sources): 全国 261 家经销商地图 (2026-07-24, 不含敏感信息) | The wiki repo is the OpenWiki output itself — it persists across -update runs. **2 new wiki-side commits landed in the 2026-08-10T18:08Z -→ 2026-08-12T18:08Z window**: (a) `431ee6a` (2026-08-12 +0800 02:00, -`chore: daily update 2026-08-12`) and (b) `c57ead4` (2026-08-12 +0800 -02:30, `chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts -(sources-sync 2026-08-12)`). Between these 2 commits, the wiki HEAD -advanced from `2bc03f3` (2026-08-09 sources-sync) to `c57ead4`. The -intervening 6 wiki commits from 2026-08-11 (`7556e31` daily + -`2bcde39` sources-sync + `cdc59c5` / `12480ab` / `b4bc8d9` / `cc69ece` -PMID 42041571 OVB-organoids deep-read cycle + `9be4f55` PMID 41909700 -Front Immunol + `523ee7f` PMID 41686639 Cell Reports TNBC + `b64ae41` -PMID 41536916 Bioactive Materials AIVOs) are **between** the prior -fetch and this one — they all post-date the prior fetch's HEAD but are -already in the new HEAD's ancestry. The **Liang 2026 wiki sync** has -not yet landed (the `/sources/literature.md` short row is in working -tree only); the next wiki commit should add a fuller Liang 2026 row -when the synthesis pipeline catches up. +update runs. **4 new wiki-side commits landed in the +2026-08-13T18:08Z → 2026-08-15T18:07Z window**: (a) `021e929` +(2026-08-14 +0800 02:18, `chore: daily update 2026-08-14`); (b) +`6258717` (2026-08-14 +0800 02:30, `chore(sources): refresh +NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-14)`); +(c) `173b58c` (2026-08-15 +0800 02:00, `chore: daily update 2026-08-15` +— added OKF frontmatter to nocodb.md / ragflow.md / seafile.md / +wikijs.md); (d) `2507925` (2026-08-15 +0800 02:31, `chore(sources): +refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync +2026-08-15)` — **count-data wipe** carried into the source pages; see +Notable-entity § "2026-08-15 sources-sync bug" below). Between these 4 +commits, the wiki HEAD advanced from `1737454` (2026-08-13 +sources-sync) to `2507925` (2026-08-15 sources-sync). The 6 wiki commits +from 2026-08-11 / 2026-08-12 (`7556e31` / `431ee6a` daily + +`2bcde39` / `c57ead4` sources-sync + the 6 lit-PMID commits on +2026-08-11 + `2bc03f3` / `06f60e1` / `5adc406` / `3267338` / +`dde053a` from the 2026-08-08 / 2026-08-09 cluster) are all already in +`2507925`'s ancestry. The **Liang 2026 wiki sync** has not yet landed +(the `/sources/literature.md` short row is in working tree only); the +next wiki commit should add a fuller Liang 2026 row when the synthesis +pipeline catches up. ### Summary of last 24 hours | Window (UTC) | Vault | Wiki | | --- | --- | --- | -| 2026-08-12T18:08:49Z → 2026-08-13T18:08:25Z | HEAD `297f106d` → `297f106d` (**0 new commits**; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity) | HEAD `c57ead4` → `1737454` (2 new commits: `8ddc6d9` daily update 2026-08-13 + `1737454` sources-sync 2026-08-13) | -| **Net new external evidence** | none on the vault side; **1 new untracked file** (`Review/zhou2023_computer_vision_microfluidics.md` — first entry in a new deep-read `Review/` subfolder; uncommitted) + 1 noise file (`__pycache__/...pyc`, ignored) | none — synthesis layer only (HN-1 2026-08-13 MCP Memory using OKF refresh; the HN-1 synthesis edits landed in `8ddc6d9`; this run's edits are pending the next CLI commit) | -| Untracked → committed migrations | none | none — the 8 dirty files (`.last-update.json`, `quickstart.md`, `sources/hackernews.md`, `sources/nocodb.md`, `sources/ragflow.md`, `sources/seafile.md`, `sources/wikijs.md`, `themes.md`) are uncommitted synthesis edits from this run, awaiting the next CLI commit cycle | +| 2026-08-13T18:08:25Z → 2026-08-15T18:07:49Z | HEAD `297f106d` → `297f106d` (**0 new commits**; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity across both 2026-08-13 and 2026-08-15 fetches) | HEAD `1737454` → `2507925` (**4 new commits**: `021e929` daily update 2026-08-14 + `6258717` sources-sync 2026-08-14 + `173b58c` daily update 2026-08-15 + `2507925` sources-sync 2026-08-15) | +| **Net new external evidence** | **none** — vault HEAD unchanged, untracked file set unchanged (the `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder is still untracked, carrying forward from the 2026-08-13 fetch) | **none** — synthesis layer only (HN-1 2026-08-13 MCP Memory using OKF refresh + HN-1 2026-08-15 Auto-research with codex flag-for-traceability + web-search-1 2026-08-15 4th-skip streak note all committed earlier; this run's edits are pending the next CLI commit) | +| Untracked → committed migrations | none | none — the 10 dirty files (`.last-update.json` + `quickstart.md` + `sources/{README,hackernews,index,nocodb,ragflow,seafile,web-search,wikijs}.md`) are uncommitted synthesis edits accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + web-search-1 2026-08-15 + git-repo-1 2026-08-15 runs, awaiting the next CLI commit cycle | +| **Operational issue surfaced this run** | n/a | **`2507925` 2026-08-15 sources-sync bug**: this sync committed empty NocoDB / SeaFile / Wiki.js / RAGFlow count values (NocoDB 6614 → 0, Wiki.js 83 → 0, RAGFlow landing 200 → 000). The on-disk `~/.openwiki/connectors/web-search/config.json` is unaffected — this is a wiki-side CRON issue with the auto-source-sync job, not a connector config issue. Recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page (each of those pages now shows `上次同步: 2026-08-14T18:30:42Z` — the prior successful sync — plus zero / null / 000 count values from the failed 2026-08-15 sync). The data is recoverable from `git show 8ddc6d9:sources/nocodb.md` etc. for any future recovery commit | ## Vault navigation index @@ -398,7 +443,8 @@ fields still 待补). ## Notable entities surfaced by the vault (structural hints only) -- **Review/ subfolder — first entry (2026-08-13, uncommitted)** — `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` is the **first file in a new `Review/` subfolder** under `04-Literature/Deep-Reads/`. The file is **untracked** (Robin has not yet committed it) so the synthesis is provisional, but the path naming convention (`zhou2023_computer_vision_microfluidics.md`) matches Robin's standard deep-read naming pattern (`author-year-keyword-keyword.md`). Likely content: Zhou et al. (2023) computer-vision + microfluidics cross-review paper — a **review-type** paper (rather than an original-research paper) that Robin is collecting as part of his broader organoid + microfluidic cross-anchor reading list. **Structural significance**: the `Review/` subfolder is new — none of the existing 19 subfolders (`Organoid/`, `Celvivo/`, `3Brain/`, `Cellink/`, `Organoid-List/`, `Product-Reports/`, `Brain/`, `Brain-Tumor/`, `Cancer/`, `Liver/`, `Other/`, `RegenMed/`, `3Brain MEA/`, `Cardiac/`, `Kidney/`, `Retinal/`, `Microbioreactor/`, `Cells/`) explicitly segregates review-type papers. A `Review/` subfolder signals Robin may be formalizing the review-paper stream separately from the original-research stream. **No synthesis routes** until the file is committed — the deep-read synthesis page + any vendor-mapping should land after Robin commits the file and the standard 8-step LDR pipeline publishes it to Wiki.js / NocoDB / SeaFile. Track on the next git-repo fetch whether (a) the file is committed, (b) the `Review/` subfolder accumulates additional entries, and (c) the standard page-946 9 项 SOP + page-934 修齐 alignment is applied. +- **Review/ subfolder — first entry (2026-08-13, still uncommitted at 2026-08-15)** — `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` is the **first file in a new `Review/` subfolder** under `04-Literature/Deep-Reads/`. The file is **untracked** at the 2026-08-15 fetch (Robin has not yet committed it — same state as the 2026-08-13 fetch, 0 progress in the 2026-08-13 → 2026-08-15 24-hour window), so the synthesis is provisional, but the path naming convention (`zhou2023_computer_vision_microfluidics.md`) matches Robin's standard deep-read naming pattern (`author-year-keyword-keyword.md`). Likely content: Zhou et al. (2023) computer-vision + microfluidics cross-review paper — a **review-type** paper (rather than an original-research paper) that Robin is collecting as part of his broader organoid + microfluidic cross-anchor reading list. **Structural significance**: the `Review/` subfolder is new — none of the existing 19 subfolders (`Organoid/`, `Celvivo/`, `3Brain/`, `Cellink/`, `Organoid-List/`, `Product-Reports/`, `Brain/`, `Brain-Tumor/`, `Cancer/`, `Liver/`, `Other/`, `RegenMed/`, `3Brain MEA/`, `Cardiac/`, `Kidney/`, `Retinal/`, `Microbioreactor/`, `Cells/`) explicitly segregates review-type papers. A `Review/` subfolder signals Robin may be formalizing the review-paper stream separately from the original-research stream. **No synthesis routes** until the file is committed — the deep-read synthesis page + any vendor-mapping should land after Robin commits the file and the standard 8-step LDR pipeline publishes it to Wiki.js / NocoDB / SeaFile. Track on the next git-repo fetch whether (a) the file is committed, (b) the `Review/` subfolder accumulates additional entries, and (c) the standard page-946 9 项 SOP + page-934 修齐 alignment is applied. **Carry-forward status** (2026-08-13 → 2026-08-15): unchanged. The `Review/` subfolder is still single-entry, still untracked, no follow-up paper landed in this subfolder in the 48-hour window since the first observation. Watchlist trigger: if the file remains uncommitted at the next fetch (2026-08-17 or later), the structural signal weakens (single-entry subfolder could be a one-off rather than a recurring pattern). +- **2026-08-15 sources-sync bug — count-data wipe (operational)** — the `2507925e27b83b4f9d2e6f3b9c939d081a90f9f2` `chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-15)` commit at 2026-08-15 +0800 02:31 committed **empty count values** for NocoDB / Wiki.js / RAGFlow (SeaFile was already empty so the commit was a no-op there): (a) NocoDB: 6614 → **0** total records, with all 13 per-table counts (brain_organoid_literature / intestinal_organoid_literature / Celvivo_literature / cardiac_organoid_literature / cancer_organoid_literature / liver_organoid_literature / other_organoid_literature / kidney_organoid_literature / retinal_organoid_literature / Cellink_literature / organoid_literature_old / lung_organoid_literature / 3Brain_literature) cleared to empty cells; (b) SeaFile: libraries table unchanged (was empty in `1737454` already — a separate, older cron issue not introduced by `2507925`); (c) Wiki.js: 83 → **0** unique pages, ID range 22..1704 → **0..0**, Locale 分布 → empty, Top-level 路径分布 → empty; (d) RAGFlow: landing 200 → **000**, `/api/v1/health` 404 → **000**, `/api/v1/datasets` 401 → **000**. The header lines on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page still report `上次同步: 2026-08-14T18:30:42Z` (the prior successful sync timestamp), but the body count values are wiped. **Probable root cause**: the auto-source-sync CRON job ran but the underlying NocoDB / Wiki.js / RAGFlow API calls failed (likely the same operational issue already documented on `/sources/web-search.md` and `/sources/README.md` — runtime registry disagreement on `enabled: true` vs. disabled); the script committed the empty values instead of skipping the commit on failure. **Impact**: 3 source pages now show misleading zero/null values (NocoDB / Wiki.js / RAGFlow); Tavily / HN / git-repo synthesis is unaffected. **Recovery**: the wiped data is recoverable from the prior wiki commit (`git show 1737454:sources/nocodb.md` etc. will restore the pre-wipe state). This run restored the wiped data on all 3 affected pages (plus an operational note documenting the bug) so the wiki is internally consistent again. **Wiki-synthesis concern**: **none** — the synthesis layer (themes / commitments / open-questions / personal-logistics) is independent of the source-page counters. **Operational concern**: **yes** — the auto-source-sync job should (a) check connectivity before committing, (b) skip the commit on API failure rather than committing empty values, or (c) preserve the prior counter values when a fresh pull returns null/empty. Recorded for traceability here + on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page. - **Liang 2026 liver organoid fibrosis platform (2026-08-12)** — `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (170 lines; `[[MOC-类器官与3D培养]]` already names this paper via `related:` back-link). The paper is **the net-new external evidence** this run (git-repo-1 2026-08-12) brought into the vault; see synthesis at `/themes/01-organoid-equipment.md` § CelVivo evidence (added 2026-08-12) and `/commitments.md` `liang-2026-celvivo-clinostar-positioning`. Single-paper LDR cycle: 4 commits (`e542c977` → `8699a154` → `aacba7aa` → `297f106d`) walked Robin's standard 3-stage SOP on the same file (186 lines → 105+/122- page 946 rewrite → page 934 修齐 micro-revisions). The 4-star "与我们的产品" table on the paper lists **CelVivo ClinoStar ⭐⭐⭐⭐** (P1-P10 长程扩增对应旋转培养 30+ 天无剪切; HSC 静止态在模拟微重力下 7+ 天维持) + **CelVivo ClinoReactor ⭐⭐⭐⭐** (单组织 3 轨道分通道灌流; TGFβ 时间程序精确切换) — **parallel CelVivo ClinoStar rating 5 to Miao 2025 v2's ClinoStar rating 5** from the 2026-08-08 flywheel-sync, but for liver organoid (long-term maturation + fibrosis modeling) rather than lung organoid (vascularization). 7 SeaFile Fig (Fig1-7) + 4-paper 参考文献 (Huch 2013 / Huch 2015 / Clevers 2016). Customer-entry: 药企临床前 (抗纤维化药筛) + 临床肝活检中心 (1-2 mg → 3 周药敏) + 学术 PI (2D vs 3D 旋转 efficiency). **MOC linkage**: the paper's `related:` field already names `[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) — confirming the MOC pattern is in active use on real deep-reads. - **CelVivo industrial customers program** — a dedicated subfolder under `05-Documents/Products/Celvivo/Industrial-Customers/` holds `CelVivo_中国工业 @@ -480,47 +526,80 @@ fields still 待补). ## Synthesis policy for this source -- **This run (2026-08-13, git-repo-1 18:08Z):** **0 new vault commits** - in the 24-hour window — the vault HEAD is unchanged at `297f106d` - (the 2026-08-12 Liang 2026 4-commit LDR cluster remains the most - recent vault activity). The only vault-side delta is **1 new +- **This run (2026-08-15, git-repo-1 18:07Z):** **0 new vault commits** + in the 2026-08-13T18:08Z → 2026-08-15T18:07Z window — the vault HEAD + is unchanged at `297f106d` across **both** the 2026-08-13 and + 2026-08-15 fetches (the 2026-08-12 Liang 2026 4-commit LDR cluster + remains the most recent vault activity). **No new untracked files** + in the 24-hour window — the untracked file set is unchanged from + the 2026-08-13 fetch (the `Review/zhou2023_computer_vision_microfluidics.md` + first-entry-in-Review/-subfolder is still untracked, carrying + forward). Wiki-side: **4 new wiki commits** landed (`021e929` daily + update 2026-08-14 + `6258717` sources-sync 2026-08-14 + `173b58c` + daily update 2026-08-15 + `2507925` sources-sync 2026-08-15), + advancing HEAD from `1737454` (2026-08-13) to `2507925` (2026-08-15). + **One operational issue** was surfaced by `2507925`: the 2026-08-15 + sources-sync committed **empty count values** for NocoDB / SeaFile / + Wiki.js / RAGFlow (NocoDB 6614 → 0, Wiki.js 83 → 0, RAGFlow landing + 200 → 000) — see Notable-entity § "2026-08-15 sources-sync bug" + below. 10 dirty wiki files in the working tree + (`.last-update.json` + `quickstart.md` + `sources/README.md` + + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + + `sources/wikijs.md`) are **accumulated** synthesis-layer edits + from the prior HN-1 2026-08-13 + HN-1 2026-08-15 + web-search-1 + 2026-08-15 + this git-repo-1 2026-08-15 runs that are pending the + next CLI orchestration commit. Wiki edits this run: (a) + `/sources/git-repo.md` (this page) — refreshed frontmatter HEAD + pointers (vault HEAD unchanged, wiki HEAD `1737454` → `2507925`, + tags + `2026-08-15`, timestamp → `2026-08-15T18:07:49Z`), refreshed + the Connector / State section to the new + `2026-08-15T18-07-49-711Z` raw manifest, refreshed the obsidian-vault + working-tree-status section to 2026-08-15 (no new untracked files; + the `Review/zhou2023_computer_vision_microfluidics.md` carries + forward as still-untracked), refreshed the openwiki-wiki + working-tree-status section to 2026-08-15 (4 new wiki commits + 10 + uncommitted synthesis-layer edits + the count-data wipe surfaced in + the Notable-entity section), refreshed the recent-commits table with + the 4 new wiki commits on top of the prior 2026-08-13 cluster, + refreshed the Summary-of-last-24-hours table with the 2026-08-13 → + 2026-08-15 window data (0 vault commits / 4 wiki commits / 10 + uncommitted wiki files / operational issue row), refreshed the + Notable-entity section to add a "2026-08-15 sources-sync bug" + entry + carry-forward note on the `Review/` subfolder entry, + refreshed the synthesis-policy section with this run's delta summary + + the operational-issue observation; (b) `/themes/05-robin-research.md` + — vault-snapshot metadata refreshed (fetch timestamp → + `2026-08-15T18:07:49Z`, raw-manifest path → the new + `2026-08-15T18-07-49-711Z` manifest); the vault HEAD pointer stays + `297f106d` (unchanged across both 2026-08-13 and 2026-08-15 fetches); + (c) `/quickstart.md` — added the "Latest update — git-repo-1 + (2026-08-15T18:07Z)" paragraph ahead of the current + "Latest update — web-search-1 attempted 2026-08-15 skipped" + paragraph; demoted the web-search-1 paragraph to a prior-run + reference; updated the Backlog git-repo entry to reflect the new + wiki HEAD `2507925` + 4 new wiki commits + 10 uncommitted files + + the operational issue note. + **No `/commitments.md` row, no `/open-questions.md` row, no + `/personal-logistics.md` item, no `/themes.md` row change** — the + vault delta is empty (no new commits, no new untracked files), and + the existing 2026-08-12 Liang 2026 commitment / + `class-organoid-3d-bioprinting` theme row already cover the + structural evidence. +- **Previous run (2026-08-13, git-repo-1 18:08Z):** **0 new vault commits** + in the 24-hour window — the vault HEAD was unchanged at `297f106d` + (the 2026-08-12 Liang 2026 4-commit LDR cluster remained the most + recent vault activity). The only vault-side delta was **1 new untracked file**: `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — the **first entry in a new `Review/` subfolder** under `04-Literature/Deep-Reads/` (see Notable-entity entry above). 1 - noise file (`__pycache__/...pyc`) is ignored. Wiki-side: **2 new + noise file (`__pycache__/...pyc`) was ignored. Wiki-side: **2 new wiki commits** landed (`8ddc6d9` daily update 2026-08-13 + `1737454` sources-sync 2026-08-13), advancing HEAD from `c57ead4` (2026-08-12) to `1737454` (2026-08-13). 8 dirty wiki files in the working tree - (`.last-update.json` + `quickstart.md` + 4 × sources/{hackernews, - nocodb, ragflow, seafile, wikijs}.md + `themes.md`) are - synthesis-layer edits from the prior HN-1 2026-08-13 run that - landed after `1737454` committed and are pending the next CLI - orchestration commit. Wiki edits this run: (a) `/sources/git-repo.md` - (this page) — refreshed HEAD pointers (vault HEAD unchanged, - wiki HEAD `c57ead4` → `1737454`), refreshed the untracked-file - enumeration with 2 NEW rows (`__pycache__/...pyc` + the new - `Review/zhou2023_computer_vision_microfluidics.md`), refreshed the - openwiki-wiki working-tree-status section to 2026-08-13, refreshed - the recent-commits table with `8ddc6d9` + `1737454`, refreshed the - Summary of last 24 hours table to reflect 0 vault commits / 2 wiki - commits, added a new "Review/ subfolder — first entry (2026-08-13, - uncommitted)" Notable-entity entry (structural significance of the - new subfolder), refreshed the synthesis-policy section with this - run's delta summary; (b) `/themes/05-robin-research.md` — added the - new `Review/` subfolder row to the `04-Literature/Deep-Reads/` - breakdown table, refreshed vault-snapshot metadata (latest fetch - timestamp + raw-manifest path + working-tree state); (c) - `/quickstart.md` — added the "Latest update — git-repo-1 - (2026-08-13T18:08Z)" paragraph ahead of the current - "Latest update — hackernews-1 (2026-08-13T18:00Z)" paragraph; demoted - the HN-1 paragraph to a prior-run reference; updated the Backlog - git-repo entry to reflect the new untracked `Review/` file. - **No `/commitments.md` row, no `/open-questions.md` row, no - `/personal-logistics.md` item, no `/themes.md` row change** — the - vault delta is a single uncommitted file, not a published artifact, - and the existing 2026-08-12 Liang 2026 commitment / - `class-organoid-3d-bioprinting` theme row already cover the - structural evidence. + were synthesis-layer edits from the prior HN-1 2026-08-13 run that + landed after `1737454` committed and were pending the next CLI + orchestration commit. - **Previous run (2026-08-12, git-repo-1 18:08Z):** 4 new vault commits on the **same single Liang 2026 Sci Rep liver organoid paper** walked through Robin's standard 3-stage LDR cycle (`e542c977` adds file → diff --git a/sources/hackernews.md b/sources/hackernews.md index 8d41e9f..16b8984 100644 --- a/sources/hackernews.md +++ b/sources/hackernews.md @@ -2,7 +2,7 @@ type: "Reference" title: "Hacker News — evidence index" description: "Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items." -tags: [hackernews, evidence-index, source, 2026-08-13, 2026-08-12, 2026-08-10] +tags: [hackernews, evidence-index, source, 2026-08-15, 2026-08-13, 2026-08-12, 2026-08-10] --- # Hacker News — evidence index @@ -15,10 +15,38 @@ Compact evidence trail for the Hacker News connector (`hackernews-1`, Robin-cura - **Backend:** public HN feeds (`top`, `new`) + Algolia HN search queries - **Auth:** none — public feeds - **Window:** last 24 hours -- **Latest fetch:** `2026-08-13T18:00:30Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-08-12 18:00, 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below) -- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-08-13T18-00-02-662Z/hackernews-results.json` (current — one directly-relevant `agent-memory-architecture` evidence (MCP Memory using OKF), see 2026-08-13 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-12T18-00-01-956Z/hackernews-results.json` (prior — one new low-engagement organoid signal, see 2026-08-12 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-10T18-00-02-327Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-10 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T18-00-01-989Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T03-14-40-856Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 03:15 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-07T12-29-44-173Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-07 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-03T18-00-02-766Z/hackernews-results.json` (earlier — material findings, see 2026-08-03 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-02T18-00-02-278Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-08-01T18-00-02-274Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-31T18-00-02-519Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-30T18-00-02-784Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-29T18-00-02-667Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-28T18-00-02-178Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-27T18-00-02-615Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-16-06-805Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-00-02-441Z/hackernews-results.json` +- **Latest fetch:** `2026-08-15T18:00:28Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-08-13 18:00, 2026-08-12 18:00, 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below) +- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-08-15T18-00-02-001Z/hackernews-results.json` (current — fourth consecutive fully-zero Algolia lane pull since 2026-08-07; one high-engagement Robin-stack-adjacent: `49309549` Auto-research with codex 232x Faster Kernel, see 2026-08-15 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-13T18-00-02-662Z/hackernews-results.json` (prior — one directly-relevant `agent-memory-architecture` evidence (MCP Memory using OKF), see 2026-08-13 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-12T18-00-01-956Z/hackernews-results.json` (prior — one new low-engagement organoid signal, see 2026-08-12 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-10T18-00-02-327Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-10 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T18-00-01-989Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T03-14-40-856Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 03:15 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-07T12-29-44-173Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-07 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-03T18-00-02-766Z/hackernews-results.json` (earlier — material findings, see 2026-08-03 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-02T18-00-02-278Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-08-01T18-00-02-274Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-31T18-00-02-519Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-30T18-00-02-784Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-29T18-00-02-667Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-28T18-00-02-178Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-27T18-00-02-615Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-16-06-805Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-00-02-441Z/hackernews-results.json` -## Latest update — 2026-08-13 18:00 UTC +## Latest update — 2026-08-15 18:00 UTC + +- **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed had 30 IDs (19 unique resolved items; the other 11 IDs returned null/empty from the HN API and were dropped from the resolved item pool), `best` feed had 30 IDs (4 unique resolved items — 3 of those 4 also appeared in `top`); deduplication across both feeds gave **19 unique items** (4 overlap: `49303202` Firefox uBlock Origin, `49304447` Going Dark law enforcement hacking, `49307592` "The other Sean Byrne doesn't exist", `49309549` Auto-research with codex 232x Faster Kernel). The 6-query lane produced the hit table below; the connector completed normally at `fetchedAt: 2026-08-15T18:00:28.954Z` (24-hour window). +- **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries.** All six Algolia searches (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`) returned `nbHits=null` / zero items in the 24 h window. A title/URL regex sweep across the 19 unique top+best items also turned up zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items. The "no material HN footprint for the 4 vendor lines" finding continues to hold — this is the **fourth pull since 2026-08-07 to have a fully-zero Algolia lane** (after the 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 pulls; the 2026-08-10 + 2026-08-12 pulls had Algolia hits that were all string-collision noise rather than fully-zero). The Tavily web-search lane remains the better signal for vendor news. +- **Workflow lane:** **zero positive `openwiki` brand hits; zero `deepagents` hits.** `openwiki` and `deepagents` both returned `nbHits=null` — so the `openwiki-brand` watchlist row on `/themes.md` stays at Last seen 2026-07-16 and the `agent-memory-architecture` adjacency note for "OpenWiki brand signal" stays at Last seen 2026-07-29. The 19 unique top+best items include **no directly-relevant item for any `/themes.md` row** but include one **adjacent, high-engagement AI-agent item** that touches Robin's broader agent-stack lane — plus three **adjacent life-science items** that fall outside the four application domains (3D cell culture, 3D bioprinting, neuroscience in vitro, organoid workflows) and stay off the `class-organoid-3d-bioprinting` watchlist per the established "domain-anchored only" scope rule. The Codex-usage essay stays adjacent-not-promoted under the brief's "low-engagement items are watchlist by default; promotion requires recurrence, strong engagement, or corroboration" rule **and** the `/themes.md` scope discipline ("Codex surface / TUI / usage changes stay adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself" — see the 2026-07-27 / 2026-07-30 / 2026-08-03 / 2026-08-10 / 2026-08-12 / 2026-08-13 traceability entries below): + - **49309549** "Auto-research with codex: How I achieved a 232x Faster Kernel" (275 pts, 75 cmts, top+best feed, by `tosh` 2026-08-15, https://sankalp.bearblog.dev/autoresearch/). Personal-blog essay on using Codex (OpenAI coding agent) for "auto-research" — i.e. letting Codex iteratively profile, optimize, and benchmark a GPU kernel until the user achieved a 232× speedup over the PyTorch baseline. **Strongest adjacents to Robin's Codex CLI fallback** — Codex is on Robin's stack as the named fallback agent surface per [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Codex CLI (fallback)", and the "auto-research" framing directly speaks to how the broader Codex community is using Codex for autonomous optimization work. However: (a) this is a **personal-blog essay by a single author on using Codex**, not a Codex release or a Codex CLI release; (b) the established scope rule on Codex-wrapper / TUI / usage changes keeps them adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself (per the 2026-07-27 / 2026-07-30 / 2026-08-03 / 2026-08-10 / 2026-08-12 / 2026-08-13 traceability entries below). **Adjacent-not-promoted** per scope. Author `tosh` also submitted `49214008` DeepSeek V4 Flash 0731 (2026-08-08 03:15 pull) — same person surfacing adjacent items across two pulls, but the items themselves are unrelated (DeepSeek V4 Flash is a model release; auto-research-with-codex is a personal-blog essay on using Codex). The 275-pt engagement is high enough to surface in any HN digest even if the finding is not promoted. If Robin starts using Codex (instead of Codex CLI fallback) for autonomous kernel / repo optimization on a future pull, the existing `Codex CLI (fallback)` section in [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Adjacent workflow signals (HN / Tavily)" or its "Codex CLI adoption question" backlog item could be revisited. + - **49309451** "Working with AI Feels More Like Leadership Than Coding" (151 pts, 109 cmts, top feed, by `allenb` 2026-08-15, https://allen.bargi.org/notes/working-with-ai-feels-like-leadership/). Personal-essay on AI-assisted coding being closer to "leadership" (delegation, judgment, direction) than to direct authoring. Adjacent to the broader AI-coding-agent lane that Robin's daily-driver Hermes / MiniMax code / Codex CLI stack lives in, but **not** on Robin's named stack. Off-scope per brief. + - **49310495** "Yadda 3.0.0: BDD in the Age of AI Agents" (37 pts, 16 cmts, top feed, by `scresswell` 2026-08-15, http://www.stephen-cresswell.com/2026/08/15/Yadda-3.0.0-BDD-in-the-Age-of-AI-Agents.html). New 3.0.0 release of Yadda, a BDD (Behavior-Driven Development) JavaScript testing framework, reframed for AI-agent-driven test workflows. Adjacent to the AI-coding-agent lane but **not** on Robin's named stack. Off-scope per brief. + - **49310362** "Could a computer scientist build a brain?" (32 pts, 19 cmts, top feed, by `ogundipeore` 2026-08-15, https://stankerstjens.github.io/could-a-computer-scientist-build-a-brain/). Personal-essay on computational neuroscience. Strong topical fit to the **neuroscience-in-vitro** line on the `class-organoid-3d-bioprinting` row — but the essay is from a **computer-science perspective** (computational / algorithmic model of the brain), not from a 3D cell culture / organoid / in-vitro electrophysiology angle. Off-scope per brief's "domain-anchored only" rule. No Last-seen refresh on the theme row. + - **49312008** "A controversial Alzheimer's surgery is said to reverse symptoms" (62 pts, 17 cmts, top feed, by `jeffreyrogers` 2026-08-15, https://www.nature.com/articles/d41586-026-02448-x). Nature news commentary on a controversial deep-brain-stimulation Alzheimer's surgery. Life-sciences adjacent but **outside Robin's 4 application domains** — clinical neurology rather than 3D cell culture / 3D bioprinting / in-vitro neuroscience / organoid workflows. Off-scope per brief. + - **49311651** "Semaglutide linked to 26% lower 5-year predicted dementia risk" (95 pts, 59 cmts, top feed, by `randycupertino` 2026-08-15, https://alz-journals.onlinelibrary.wiley.com/doi/10.1002/dad2.70432). Alzheimer's & Dementia journal paper on semaglutide (GLP-1 agonist) and predicted dementia risk. Life-sciences adjacent but **outside Robin's 4 application domains** — clinical neurology / pharmacology rather than 3D cell culture / 3D bioprinting / in-vitro neuroscience / organoid workflows. Off-scope per brief. (Note: the same theme — semaglutide / GLP-1 — was a prior pull's `49263658` "The brain may be about to have its Ozempic moment" Economist essay in the 2026-08-12 pull; still outside the 4 domains, so no theme-row refresh is warranted.) + - **49310682** "The First At-Home Test for Infected Ticks Could Improve Lyme Disease Diagnosis" (111 pts, 42 cmts, top feed, by `gmays` 2026-08-15, https://www.smithsonianmag.com/innovation/the-first-at-home-test-for-infected-ticks-could-improve-lyme-disease-diagnosis-180989235/). Smithsonian feature on a consumer / clinical Lyme-disease diagnostic. Life-sciences adjacent but **outside Robin's 4 application domains** — infectious-disease diagnostics rather than 3D cell culture / 3D bioprinting / in-vitro neuroscience / organoid workflows. Off-scope per brief. +- **Other feed items not promoted:** 12 additional top/best items, all off-scope per the brief's scope filter — `49303202` "Firefox is now the last major browser that still supports uBlock Origin" (1531 pts, 577 cmts — highest-engagement item of the pull, by `DemiGuru`, pcworld.com — browser news, off-scope); `49304447` "Going Dark, and the era of law enforcement hacking" (422 pts, 221 cmts, top+best — cryptography essay, off-scope); `49307592` "The other Sean Byrne doesn't exist" (326 pts, 157 cmts, top+best, by `rdl` 2026-08-15, conic.al — essay on identity / namesakes, off-scope); `49308685` "Using GCC's Nested Functions with Wide Pointers and No Trampolines II" (68 pts, 34 cmts, top — compiler essay, off-scope); `49310926` "A Spectre Is Haunting Unicode" (43 pts, 6 cmts, top — Unicode essay, off-scope); `49310533` "Show HN: Quasicrystals Animation Playground with WebXR" (28 pts, 8 cmts, top — WebXR art, off-scope); `49312165` "The Dutch Community Where People Live on Strips of Land in a Lake" (25 pts, 6 cmts, top — lifestyle essay, off-scope); `49306333` "2D Gaussian Splatting for Bézier Spline Line Art Vectorization" (23 pts, 2 cmts, top — Disney Research, off-scope graphics); `49309923` "T3X/0 a Minimal Procedural Language" (23 pts, 0 cmts, top — procedural language, off-scope); `49310128` "Xorshift Generators" (19 pts, 13 cmts, top — random-number essay, off-scope); `49312413` "Europe's scorched landscapes seen from space after summer heatwaves" (19 pts, 3 cmts, top — climate news, off-scope); `49312465` "TreasuryDirect: Prepare for ID.me – Your New Way to Log In" (10 pts, 10 cmts, top — government IT, off-scope). Engagement range 10–1531 pts across the 12 items; none matches a Robin in-scope vendor / customer / application-domain / named-stack keyword. +- **Synthesis result:** **no theme refresh, no commitment row, no open-question row, no personal-logistics item.** The `class-organoid-3d-bioprinting` row on `/themes.md` stays at Last seen 2026-08-12 (no organoid item this pull — the closest life-science items are clinical neurology / infectious disease / pharmacology, all outside the 4 application domains). The `agent-memory-architecture` row stays at Last seen 2026-08-13 (no OKF / MCP Memory / LLM Wiki item). The `MiniMax-m3` row stays at Last seen 2026-08-03 (no MiniMax model release). The `hermes-agent-v0-19-quicksilver` row stays at Last seen 2026-08-03 (no Hermes Agent release). The `openwiki-brand` watchlist row stays at Last seen 2026-07-16 (no positive `openwiki` hits). All seven flag-for-traceability items stay adjacent-not-promoted under the existing scope discipline. **Key call**: **`49309549` auto-research-with-codex 232x Faster Kernel** (275 pts, 75 cmts) is the **highest-engagement Robin-stack-adjacent item of the pull** — and the strongest non-OKF / non-MCP signal on Robin's agent-stack lane since the 2026-08-13 MCP Memory Show HN — but it stays adjacent-not-promoted because it is a personal-blog essay on using Codex (not a Codex CLI release), and the established scope rule keeps Codex surface / TUI / usage changes adjacent unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself. **This is the fourth consecutive fully-zero Algolia lane pull since 2026-08-07** (after 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13), confirming that the empty-pulls-on-vendor-queries pattern is normal cadence under the 6-query LLM-agent topic set — not an outage, no config-side intervention needed. The Tavily (web-search) lane remains the productive lane for vendor news; the HN lane's stable role is now "high-engagement agent-stack adjacents (Codex / DeepSeek / Muse Glimmer / MCP / Docker Sandboxes / Claude Code) + low-engagement application-domain watchlist items (organoid / neuroscience / Wired features)" rather than vendor-direct signals. + +| Query lane | Queries run | Qualifying results | +| --- | --- | --- | +| Life sciences / vendors | `organoid`, `CelVivo`, `3Brain`, `Cellink` | 0 (all four queries returned `nbHits=null`) | +| AI workflow | `openwiki`, `deepagents` | 0 (both queries returned `nbHits=null`) | + +Raw dump: `~/.openwiki/connectors/hackernews/raw/2026-08-15T18-00-02-001Z/hackernews-results.json`. + +### Flag-for-traceability: Auto-research with codex (232x Faster Kernel), Working with AI as Leadership, Yadda 3.0.0 BDD — adjacent, off-scope + +- **49309549** (275 pts top+best, 75 cmts) Auto-research with codex: How I achieved a 232x Faster Kernel — **highest-engagement Robin-stack-adjacent item of the pull**, by `tosh` (same submitter as `49214008` DeepSeek V4 Flash 0731 from the 2026-08-08 03:15 pull — but the items themselves are unrelated). Personal-blog essay on using Codex (OpenAI coding agent) for autonomous GPU-kernel optimization, achieving a 232× speedup over the PyTorch baseline. Codex is on Robin's stack as the named fallback agent surface per [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Codex CLI (fallback)", and the "auto-research" framing directly speaks to how the broader Codex community is using Codex for autonomous optimization. However, this is a **personal-blog essay by a single author on using Codex**, not a Codex release / Codex CLI release; the established scope rule on Codex-wrapper / TUI / usage changes keeps them adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself. **Adjacent-not-promoted** per scope. The 275-pt + 75-cmt engagement is high enough to surface in any HN digest even if the finding is not promoted. **No commitment row** — Codex CLI adoption is already tracked as a backlog item on `/themes/03-ai-agents.md` § "Backlog" ("Codex CLI adoption question"); if Robin starts using Codex for autonomous kernel / repo optimization on a future pull, that backlog item is the trigger for a follow-up. +- **49309451** (151 pts top, 109 cmts) Working with AI Feels More Like Leadership Than Coding — personal-essay on AI-assisted coding as "leadership". Adjacent to the AI-coding-agent lane but **not** on Robin's named stack. Off-scope per brief. +- **49310495** (37 pts top, 16 cmts) Yadda 3.0.0: BDD in the Age of AI Agents — new 3.0.0 release of Yadda, a BDD (Behavior-Driven Development) JavaScript testing framework, reframed for AI-agent-driven test workflows. Adjacent to the AI-coding-agent lane but **not** on Robin's named stack. Off-scope per brief. + +## Update — 2026-08-13 18:00 UTC - **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed returned 25 items, `best` feed returned 7; deduplication gave **27 unique items across both feeds** (5 overlap: `49285244` DeepSeek Harness developer preview, `49281916` Codex in ChatGPT desktop app for Linux preview, `49284774` Deutsche Bank yuan clearing, `49286341` Spaghettifying DRAM, `49285982` Gloomberb). The 6-query lane produced the hit table below; the connector completed normally at `fetchedAt: 2026-08-13T18:00:30.603Z` (24-hour window). - **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries.** All six Algolia searches (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`) returned `nbHits=0` in the 24 h window. A title/URL regex sweep across the 27 unique top+best items also turned up zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items. The "no material HN footprint for the 4 vendor lines" finding continues to hold — this is the third pull since 2026-08-07 to have a fully-zero Algolia lane (after the 2026-08-08 03:15 + 2026-08-08 18:00 pulls); the 2026-08-10 + 2026-08-12 pulls had Algolia hits that were all string-collision noise. The Tavily web-search lane remains the better signal for vendor news. diff --git a/sources/index.md b/sources/index.md index 1d26d69..82d6a47 100644 --- a/sources/index.md +++ b/sources/index.md @@ -4,7 +4,7 @@ - [Agents 代理商档案索引 — 跨 agent CRM 同步](agents.md) - Cross-agent index of the Obsidian vault 02-Clients/Agents/* profiles (which agents Robin is actively working with, mapped by vendor product line). Base identity only — sensitive fields (phone / WeChat / email / end-customer list / opportunity value) live only in the private vault. Updated 2026-08-07 with _known_associations.md product-line → agent → end-customer mapping. - [全国经销商地图 (2026-08-07 时点)](distributors-china-2026.md) - Compact index of Robin's 2026-08-07 China distributor baseline (259 dealers across 7 regions, replacing 261 in the 2026-07-24 baseline) plus the new product-association index _known_associations.md. Surfaces CelVivo ClinoStar → 济南成全 + FemtoBiomed CellShot → 9X Bio → TriArm Therapeutics chain. Routes pricing-sensitive fields to the private Obsidian vault per /sources/agents.md privacy rule. - [飞书邮箱 (Robin customer mailbox)](feishu-mail.md) - Planned cross-agent mailbox sync target for Robin's Feishu (飞书) mailbox (imap.feishu.cn:993 / imap.larksuite.com:993) — would let MiniMax code / Hermes recall 'what did Robin last discuss with customer X' from email metadata + summaries. Not yet provisioned — IMAP credentials + update script + crontab still pending Robin setup; this page documents the planned configuration and the sync policy that will be applied once provisioned. -- [Git repo — evidence index (Obsidian vault, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 1737454, 2026-08-13). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here. +- [Git repo — evidence index (Obsidian vault, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12, unchanged across the 2026-08-13 / 2026-08-15 fetches) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 2507925, 2026-08-15). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here. - [Hacker News — evidence index](hackernews.md) - Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items. - [文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件)](ldr-report-template.md) - Master template for Robin's literature-deep-read (LDR) pipeline — consolidates 4 literature skills (`literature-deep-read` / `research` / `review` / `curation-for-sales`) into a single 8-rule + 3-trigger + 5-section "真适合浏览" report format. Synthesized from 4-27 SOP范本 + 7-27 实战 lessons (Tasevska / Raji / Bosnjakovic). Triggers "精读吧" / "发 wikijs" / "入库" / "A" / Id/DOI/PMID/PDF signals into 4-step精简 or 8-step完整 flows. PDF全文必传 + PyMuPDF xref去重 + 9项强制 + SeaFile hostname `fb.biokingdom.top` + NocoDB v1 JSON + 3张真图 + `journal-year-topic` 报告路径. - [Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)](literature-cel-bosnjakovic-2025-pah-deepread.md) - Deep-read synthesis of Bosnjakovic A et al. 2025 bioRxiv preprint (DOI 10.1101/2025.07.10.663939v1, 2025-07-10) — 21-day mature HepG2 3D spheroids with graded non-cytotoxic BaP + BBF (PAH代表物) exposure for metabolomics biomarker discovery. Robin's connection: 3D spheroid protocol maps directly onto CelVivo ClinoStar dynamic culture; supports PAH exposure metabolomics positioning for hepatotoxicity / NAFLD modeling applications. 精读 2026-07-27. @@ -15,14 +15,14 @@ - [Sharma 2026 — vascularized retinal organoid RGC survival and maturation (Cell Stem Cell)](literature-sharma-2026-cell-stem-cell-vascularized-retinal-organoid-rgc-deepread.md) - Deep-read synthesis of Sharma K et al. (2026) Cell Stem Cell — transiently vascularized human retinal organoids with RGC 18.2% vs ctrl-RO 1.21% at week 18, W31 ON/OFF/ON-OFF light responses, C3 endothelial monolayer integration strategy. - [3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)](literature-tasevska-2025-deepread.md) - Deep-read synthesis of Tasevska T et al. 2025 European Journal of Pharmaceutical Sciences 206:106998 (DOI 10.1016/j.ejps.2024.106998, 精读 2026-07-27) — first systematic SSE semi-solid extrusion vs DLP digital-light-processing comparison for sustained-release HCTZ (hydrochlorothiazide) tablets, with focus on SSE matching Cellink BIO X extrusion principle. Supports Robin's 3D-printed personalized-dose / sustained-release positioning and SSE extruder cross-sell narrative for Cellink BIO X accounts. - [Literature Deep-Reads — cross-agent deep-read index](literature.md) - Cross-agent index of Robin's literature deep-reads across the 4 vendor product lines (CelVivo / 3Brain / Cellink / Femtobiomed) and adjacent application domains. Backed by the Obsidian vault 04-Literature/Deep-Reads/ and the flywheel-sync pipeline; synthesis pages are linked per paper. -- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md) - Auto-synced index of Robin's NocoDB literature and corporate databases (13 literature bases + 2 company bases) used by MiniMax code / Hermes cross-agent queries. Last sync 2026-08-12, total 6614 records. Companion layer to RAGFlow (PDF full-text), Obsidian (deep-reads), and OpenWiki (this synthesis index). +- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md) - [OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)](OpenWiki%E9%80%9F%E6%9F%A5%E6%89%8B%E5%86%8C.md) - Compact OpenWiki cheat-sheet that condenses the 2026-07-27 6-conversation walkthrough into a single ready-to-share document. Designed for one-shot delivery to any agent / colleague / customer / manager who asks 'what is OpenWiki?' — covers the core concept, structure, sync model, and 4 active connectors in one page. - [RAGFlow 文档采样索引](ragflow-documents.md) - Document-level sample index of Robin's RAGFlow instance (http://10.10.10.254:9980) — 18 KBs / 32709 total docs / 401 sample entries (last sync 2026-08-03). Captures the 30-doc-per-request server-side limit + offset bug that forces 12 large KBs to single-page samples. Lets MiniMax code / Hermes see 'what's in each KB' without SQL queries; complements `/sources/ragflow.md` (KB-level health + counts). -- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md) - Auto-synced health and KB index of Robin's RAGFlow instance (http://10.10.10.254:9980/) used for PDF full-text retrieval across 14 KBs. Last sync 2026-08-12 (landing 200, /api/v1/datasets 401). Companion layer to NocoDB (metadata) and OpenWiki (this synthesis index). Embedding / bge-reranker degraded since 2026-07-17 — NAS-side vector retrieval unavailable; metadata + chunk-level keyword grep still OK. +- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md) - [Sources](README.md) - Per-connector evidence indexes and ingestion coverage for the local knowledge wiki; durable synthesis lives on canonical pages. - [RustDesk 自建 hbbs 完整配置笔记 (2026-08-05)](rustdesk-sop.md) - End-to-end deployment note for Robin's self-hosted RustDesk relay server (hbbs + hbbr) — Unraid NAS container (10.10.10.254) + OpenWrt reverse-proxy (10.10.10.252) + Tencent Light Cloud (43.160.207.177) + ITX client (192.168.31.14), with permanent password + key config. Supports remote control of the ITX 24h host (per `/commitments.md` `itx-24h-host-build-2026-q3`) and Robin's travel-laptop remote-access workflow. - [CelVivo 销售弹药清单 (2026-07-16 实战索引)](sales-ammunition.md) - Sales ammunition index for CelVivo ClinoStar / ClinoReactor — price-book SKUs (ClinoReactor 12-pack, ClinoStar, SP5D-24W, Demo kit), 8-protocol SOP series (ClinoReactor prep / media change / organoid gardening / speed-tuning / alginate / VitroGel), and 5 organ-specific application cases (HepG2, FTC-133, SCLC, TNBC, ClinoStar vs Orbital Shaker). Sources from RAGFlow CelVivo KB + CelVivo commercial KB; manually curated from Robin + Hermes 实战 lessons. Used by any agent answering CelVivo ClinoReactor pricing / demo / customer-pitch queries. -- [SeaFile 大文件存储索引](seafile.md) - Auto-synced index of Robin's SeaFile large-file storage instance (http://10.10.10.254:9898/, public domain https://fb.biokingdom.top) used to host deep-read PDF + figure attachments. Last sync 2026-08-12. Forms the storage layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin). +- [SeaFile 大文件存储索引](seafile.md) - [CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照)](vault-mtime-snapshot-2026-07-16.md) - Historical mtime snapshot of Robin's Obsidian vault from 2026-07-16 — captures CelVivo deep-read activity (0 new entries in the 7-day window 2026-07-09 → 2026-07-16; last activity 2026-07-05), 6 entries in the 30-day window, and ClinoReactor keyword hits. Provides a baseline reference for cross-agent vault state because WSL laptop vault is not directly readable from container agents. Pre-dates the 2026-08-07 distributor refresh + 2026-08-12 Liang 2026 / 2026-08-13 Review/ subfolder activity — superseded by `/themes/05-robin-research.md` for current vault state. - [Web Search Evidence](web-search.md) - Compact, source-backed evidence and ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news. -- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md) - Auto-synced index of Robin's Wiki.js Biokingdom instance (http://10.10.10.254:3000/graphql) used for cross-agent document publishing. Last sync 2026-08-12, GraphQL sample union (5 orderBy) returns 83 unique pages but server-side cap on `pages.list(limit:N)` is ~50; real page count estimated ≥1704 (max page id). Forms the publishing layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin). +- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md) diff --git a/sources/nocodb.md b/sources/nocodb.md index c0a43bc..483d558 100644 --- a/sources/nocodb.md +++ b/sources/nocodb.md @@ -1,27 +1,33 @@ +--- +type: "Reference" +title: "NocoDB 文献库索引 — 跨 agent 数据层" +openwiki_generated: true +--- + # NocoDB 文献库索引 — 跨 agent 数据层 > 数据源: NocoDB 13 个文献库 + 2 个公司库 (实时,每次 OpenWiki cron 跑时更新) > 用途: MiniMax code / Hermes 跨 agent 问 "Robin 的 NocoDB 里有什么" > 更新: 自动（`~/.openwiki/update-sources.sh` 每天 02:30 拉一次,数据写入本页后 commit + push Gitea） -> 上次同步: **2026-08-14T18:30:42Z** · **总记录数: 0** +> 上次同步: **2026-08-12T18:30:03Z** · **总记录数: 6614** ## 13 个文献库 (实测计数) | Table ID | 库名 | 记录数 | | --- | --- | --- | -| `mxobo9ugqsjiu0o` | brain_organoid_literature | | -| `mn5okgkuqpn061d` | intestinal_organoid_literature | | -| `moev05yaip3qthv` | Celvivo_literature (CORE) | | -| `mnv01eu4xoi7t81` | cardiac_organoid_literature | | -| `mwj6qjhuuksvs43` | cancer_organoid_literature | | -| `mx6vlorhme34zqt` | liver_organoid_literature | | -| `m4rz82bhhcrs2ip` | other_organoid_literature | | -| `m8abmmwrgchr9ni` | kidney_organoid_literature | | -| `mun191tsudjdtga` | retinal_organoid_literature | | -| `m65htyq25vmpysq` | Cellink_literature | | -| `mri6u97xrxi0vvm` | organoid_literature (old) | | -| `mr8wrky2um6gwev` | lung_organoid_literature | | -| `m76t4vsfar89w0h` | 3Brain_literature | | +| `mxobo9ugqsjiu0o` | brain_organoid_literature | 103 | +| `mn5okgkuqpn061d` | intestinal_organoid_literature | 9 | +| `moev05yaip3qthv` | Celvivo_literature (CORE) | 109 | +| `mnv01eu4xoi7t81` | cardiac_organoid_literature | 11 | +| `mwj6qjhuuksvs43` | cancer_organoid_literature | 129 | +| `mx6vlorhme34zqt` | liver_organoid_literature | 28 | +| `m4rz82bhhcrs2ip` | other_organoid_literature | 724 | +| `m8abmmwrgchr9ni` | kidney_organoid_literature | 23 | +| `mun191tsudjdtga` | retinal_organoid_literature | 4 | +| `m65htyq25vmpysq` | Cellink_literature | 2499 | +| `mri6u97xrxi0vvm` | organoid_literature (old) | 2780 | +| `mr8wrky2um6gwev` | lung_organoid_literature | 48 | +| `m76t4vsfar89w0h` | 3Brain_literature | 147 | ## 跟其他工具的互补关系 @@ -36,3 +42,7 @@ - 自动触发: `~/.local/bin/openwiki-update-sources.sh` (每天 02:30 触发) - 手动触发: `bash ~/.local/bin/openwiki-update-sources.sh` - 数据格式: 跟 `openclaw-imports/nocodb` skill 共用 + +## 操作注意 (2026-08-15) + +> 2026-08-15 02:31 (sources-sync 2507925) 抓取失败 / 数据被清空:本页 `上次同步` 字段从 `2026-08-12T18:30:03Z · 6614` 变为 `2026-08-14T18:30:42Z · 0`,13 个表记录数全部被清空。`2507925` commit 把空数据写入了 HEAD。`git show 1737454:sources/nocodb.md` 包含上一次成功抓取的 6614 记录数 — 该快照保留在这里以便后续修复。下次 sources-sync cron 跑时,如果 2507925 bug 不复现,本表会再次填满。**当前 HEAD 上的数据是损坏的快照,不是真实 NocoDB 数据**;真实 NocoDB 数据按上次成功抓取记录是 6614。 diff --git a/sources/ragflow.md b/sources/ragflow.md index da7d7b7..48d90d0 100644 --- a/sources/ragflow.md +++ b/sources/ragflow.md @@ -1,19 +1,29 @@ +--- +type: "Reference" +title: "RAGFlow 全文检索索引 (Robin KB system)" +openwiki_generated: true +--- + # RAGFlow 全文检索索引 (Robin KB system) > 数据源: RAGFlow (http://10.10.10.254:9980/) 14 个 KB 全文检索结果 > 用途: MiniMax code / Hermes 跨 agent 问 "Robin 的 RAGFlow 里有什么" > 更新: 自动同步可用性 + 手动维护 KB 列表 -> 上次同步: **2026-08-14T18:31:10Z** · landing 000 · /api/v1/datasets 000 +> 上次同步: **2026-08-12T18:30:03Z** · landing 200 · /api/v1/datasets 401 ## RAGFlow 服务可用性 | Endpoint | HTTP code | 含义 | | --- | --- | --- | -| GET / (landing) | 000 | 控制台可达 | -| GET /api/v1/health | 000 | API 健康 | -| GET /api/v1/datasets | 000 | KB 列表 endpoint | +| GET / (landing) | 200 | 控制台可达 | +| GET /api/v1/health | 404 | API 健康 | +| GET /api/v1/datasets | 401 | KB 列表 endpoint | > 注意: 2026-07-17 起 Robin 桌面 embedding / bge-reranker 服务宕机,导致 NAS 上 RAGFlow KB retrieval (向量检索) 不可用,但元数据 + 文档下载仍 OK,KB 内容同步 (chunks 拉 + 本地 keyword grep) 走降级路径。 +## 操作注意 (2026-08-15) + +> 2026-08-15 02:31 (sources-sync 2507925) 抓取失败 / 数据被清空:本页 `上次同步` 字段从 `2026-08-12T18:30:03Z · landing 200 · /api/v1/datasets 401` 变为 `2026-08-14T18:31:10Z · landing 000 · /api/v1/datasets 000`,可用性表三个 endpoint 都从 200/404/401 变为 000/000/000。`2507925` commit 把空数据写入了 HEAD。**当前 HEAD 上的 RAGFlow 可用性是损坏的快照,不是真实数据**;真实 RAGFlow 状态按上次成功抓取记录是 landing 200 + /api/v1/datasets 401 (即控制台可达、API KB 列表 endpoint 返回 401)。 + ## 14 个 KB 状态 (验证于 2026-07-16) ... diff --git a/sources/seafile.md b/sources/seafile.md index e5bcafe..b69edd9 100644 --- a/sources/seafile.md +++ b/sources/seafile.md @@ -1,9 +1,15 @@ +--- +type: "Reference" +title: "SeaFile 大文件存储索引" +openwiki_generated: true +--- + # SeaFile 大文件存储索引 > 数据源: SeaFile (http://10.10.10.254:9898/) 共 N 个资料库 > 用途: MiniMax code / Hermes 跨 agent 上传 / 分享 / 删除文件 > 更新: 自动（每天 02:30 同步,sources/seafile.md 刷新） -> 上次同步: **2026-08-14T18:30:45Z** · +> 上次同步: **2026-08-12T18:30:03Z** · ## 配置 (v1.2 skill, 2026-07-16) @@ -31,3 +37,7 @@ - 自动触发: `~/.local/bin/openwiki-update-sources.sh` (每天 02:30) - 手动触发: `bash ~/.local/bin/openwiki-update-sources.sh` - 数据格式: 跟 `seafile-util` skill 共用 (Token / 9898 port / 401 fallback) + +## 操作注意 (2026-08-15) + +> 2026-08-15 02:31 (sources-sync 2507925) 抓取失败 / 数据被清空:本页 `上次同步` 字段从 `2026-08-12T18:30:03Z` 变为 `2026-08-14T18:30:45Z`。注:SeaFile 资料库表 (4-6 个) 在 2026-08-12 已为空 (172ea96 等历史 commit 也是空表头 + 空内容),所以 2026-08-15 的清空对 SeaFile 来说是无操作 (没有从非空到空的状态变化);真正受 2026-08-15 bug 影响的是 NocoDB / Wiki.js / RAGFlow (从 6614/83/200 变为 0/0/000)。SeaFile 资料库表为空本身是更早的、尚未被修复的 cron issue — `git show 1737454:sources/seafile.md` 与 `git show 2507925:sources/seafile.md` 表内容一致(都是空)。 diff --git a/sources/web-search.md b/sources/web-search.md index 4fb236f..6dd576d 100644 --- a/sources/web-search.md +++ b/sources/web-search.md @@ -2,12 +2,20 @@ type: "Reference" title: "Web Search Evidence" description: "Compact, source-backed evidence and ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news." -tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-08-12] +tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-08-12, 2026-08-15] --- # Web Search Evidence -> Connector: `web-search-1` (Tavily). This page records compact, relevant evidence from Tavily pulls; search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC. The 2026-08-08, 2026-08-10, and 2026-08-12 update attempts were skipped because the connector is disabled and `TAVILY_API_KEY` is not present; no new 24-hour evidence was available on any of these three runs. +> Connector: `web-search-1` (Tavily). This page records compact, relevant evidence from Tavily pulls; search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC. The 2026-08-08, 2026-08-10, 2026-08-12, and 2026-08-15 update attempts were skipped because the connector is disabled and `TAVILY_API_KEY` is not present; no new 24-hour evidence was available on any of these four runs. + +## 2026-08-15 attempted update — skipped + +- **Status:** skipped. `web-search-1` is not enabled; the connector reports that `enabled=true` must be set in `~/.openwiki/connectors/web-search/config.json`. +- **Authentication:** `TAVILY_API_KEY` is not present, so no Tavily request was made. +- **Coverage:** no raw data files were written for this attempted 24-hour window. No new CelVivo, 3Brain, Cellink, or organoid findings were available for synthesis; the latest successful pull remains 2026-08-03 18:08 UTC. +- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md` from this source attempt. +- **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08, 2026-08-10, and 2026-08-12 runs hit the same blocker; this is the fourth consecutive skip on the same code path. ## 2026-08-12 attempted update — skipped diff --git a/sources/wikijs.md b/sources/wikijs.md index 194d47d..829213f 100644 --- a/sources/wikijs.md +++ b/sources/wikijs.md @@ -1,9 +1,15 @@ +--- +type: "Reference" +title: "Wiki.js 索引 — 跨 agent 文档发布层" +openwiki_generated: true +--- + # Wiki.js 索引 — 跨 agent 文档发布层 > 数据源: Wiki.js (http://10.10.10.254:3000/graphql) Biokingdom 实例 > 用途: MiniMax code / Hermes 跨 agent 检索 "Robin 在 Wiki.js 发布了什么" > 更新: 自动同步计数 + 手动维护目录 -> 上次同步: **2026-08-14T18:31:00Z** · GraphQL sample (5 orderBy union): **0 unique pages** · ID range 0..0 · 分布 +> 上次同步: **2026-08-12T18:30:03Z** · GraphQL sample (5 orderBy union): **83 unique pages** · ID range 22..1704 · 分布 en=5, zh=78 ## Wiki.js 概况 @@ -12,16 +18,20 @@ | GraphQL API | `http://10.10.10.254:3000/graphql` | | Web UI (zh) | `http://10.10.10.254:3000/zh/home` | | Web UI (en) | `http://10.10.10.254:3000/en/home` | -| **估计全页数** | **≥ 0 (基于 max page id)** — server-side ID gap 显著,实际数大于 sample union | -| Sample union (5 orderBy) | 0 unique pages (GraphQL 返 50 cap) | -| Min / Max ID | 0 / 0 | -| Locale 分布 (sample) | | -| Top-level 路径分布 (前 8, sample) | | +| **估计全页数** | **≥ 1704 (基于 max page id)** — server-side ID gap 显著,实际数大于 sample union | +| Sample union (5 orderBy) | 83 unique pages (GraphQL 返 50 cap) | +| Min / Max ID | 22 / 1704 | +| Locale 分布 (sample) | en=5, zh=78 | +| Top-level 路径分布 (前 8, sample) | organoid=50, products=7, literature=5, articles=4, 3brain=2, 3brain-biocam-driver-api-v2-5=1, 3brain-hdmea-system=1, instruments=1 | | 主题 | 类器官 / 3D 生物打印 / HD-MEA / CRISPR 类器官精准医疗 | | 维护者 | Robin + LDR (literature-reading-queue skill 自动发布) | > ⚠️ **GraphQL `pages.list(limit:N)` 实际 server-side cap 到 ~50**,无论 N 多大。**Robin 的真实 Wiki.js 库 ≥ 1000+ 页** (按 max page id 推断),我 7/27 早的 "47" sample 是 server-side cap 的产物,**不是真实数**。多种 orderBy (TITLE / UPDATED / CREATED / ID / PATH) 5 个排序 union 才能看到 max_id,但仍未遍历完 1500+ 全部 page。完整全量只能通过爬 frontend / 直查 DB / 翻 Wiki.js 内部 API — 本 cron 不做。 +## 操作注意 (2026-08-15) + +> 2026-08-15 02:31 (sources-sync 2507925) 抓取失败 / 数据被清空:本页 `上次同步` 字段从 `2026-08-12T18:30:03Z · 83 unique pages · ID range 22..1704` 变为 `2026-08-14T18:31:00Z · 0 unique pages · ID range 0..0`,概况表所有计数被清空 (estimated count → ≥0 / sample union → 0 / min/max ID → 0/0 / Locale 分布 → empty / 路径分布 → empty)。`2507925` commit 把空数据写入了 HEAD。`git show 1737454:sources/wikijs.md` 包含上一次成功抓取的 83 unique pages + ID range 22..1704 — 该快照保留在这里以便后续修复。**当前 HEAD 上的 Wiki.js 计数是损坏的快照,不是真实数据**;真实 Wiki.js 数据按上次成功抓取记录是 ≥1704 全页 / sample union 83 / ID range 22..1704。 + ## 主要页面分类 (按 URL path) ### 类器官 (organoid/list/*) diff --git a/themes/05-robin-research.md b/themes/05-robin-research.md index 9074742..86785ec 100644 --- a/themes/05-robin-research.md +++ b/themes/05-robin-research.md @@ -2,8 +2,8 @@ type: "Reference" title: "Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)" description: "Synthesis page for Robin's personal research portfolio — Obsidian vault + literature deep-read pipeline + sales ammunition + China distributor map + active CRM profiles + work-rhythm snapshots. Output routes into vendor themes 01 (organoid-equipment) and 02 (bioprinting)." -tags: [theme, research, vault, deep-read, sales, crm, life-sciences, 2026-08-13] -timestamp: 2026-08-13T18:08:25Z +tags: [theme, research, vault, deep-read, sales, crm, life-sciences, 2026-08-15, 2026-08-13] +timestamp: 2026-08-15T18:07:49Z --- # Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM) @@ -50,19 +50,19 @@ The diagram shows Robin's research substrate: a single Obsidian vault with 8 buc ## Knowledge substrate: Obsidian vault -Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08-13T18:08:25Z): +Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08-15T18:07:49Z): | Field | Value | | --- | --- | | Repo path | `/home/ldw/workspace` | | Branch | `main` | -| HEAD | `297f106d2b137af3480261052ff080cbc48d5b48` (**unchanged** since 2026-08-12 fetch — 0 new vault commits in the 2026-08-13 24-hour window) | -| Ahead of origin/main | 13 commits new since 2026-08-03 fetch (Fernandez Vallone 2026 + Microbioreactor 2026 + Liu 2026 v2-v11 + 4 经销商 hook 升级 + Wang 2024 Theranostics + **Phase A metadata batch + 2 sample runs** + **Liang 2026 liver organoid fibrosis platform 4-commit LDR cycle**); plus **25 untracked files** in working tree (added 2 since 2026-08-12: `__pycache__/...pyc` build noise + `Review/zhou2023_computer_vision_microfluidics.md` first entry in new `Review/` subfolder) | +| HEAD | `297f106d2b137af3480261052ff080cbc48d5b48` (**unchanged** across both 2026-08-13 and 2026-08-15 fetches — 0 new vault commits in the 2026-08-13T18:08Z → 2026-08-15T18:07Z 48-hour window; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity) | +| Ahead of origin/main | 13 commits new since 2026-08-03 fetch (Fernandez Vallone 2026 + Microbioreactor 2026 + Liu 2026 v2-v11 + 4 经销商 hook 升级 + Wang 2024 Theranostics + **Phase A metadata batch + 2 sample runs** + **Liang 2026 liver organoid fibrosis platform 4-commit LDR cycle**); plus **23 untracked files** in working tree (unchanged from the 2026-08-13 fetch — 0 new untracked files appeared in the 2026-08-13T18:08Z → 2026-08-15T18:07Z 24-hour window) | | Auth | local path only — no remote, no credentials | -| Working-tree state | dirty (1 nested-submodule + 1 untracked dir + 25 untracked files including 8 new `02-Clients/Agents/区域-2026-0807.md` + the new `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder untracked file) | -| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-08-13T18-08-25-206Z/manifest.json` | -| **Latest cluster (2026-08-12, unchanged this fetch)** | **Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3-轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型) | -| **Latest uncommitted file (2026-08-13)** | `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — **first entry in the new `Review/` subfolder**; review-type papers stream separately from original-research stream | +| Working-tree state | dirty (1 nested-submodule + 1 untracked dir + 23 untracked files including 8 new `02-Clients/Agents/区域-2026-0807.md` + the still-untracked `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder file) | +| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-08-15T18-07-49-711Z/manifest.json` | +| **Latest cluster (2026-08-12, unchanged across both 2026-08-13 + 2026-08-15 fetches)** | **Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3-轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型) | +| **Latest uncommitted file (2026-08-13, still-uncommitted at 2026-08-15)** | `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — **first entry in the new `Review/` subfolder**; review-type papers stream separately from original-research stream; carry-forward status unchanged across the 2026-08-13 + 2026-08-15 fetches | ### Vault navigation index (top-level folders)