chore: daily update 2026-08-14
This commit is contained in:
OpenWiki Bot
+1
-1
@@ -1,5 +1,5 @@
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{
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"updatedAt": "2026-08-12T18:16:59.273Z",
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"updatedAt": "2026-08-13T18:18:06.096Z",
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"command": "update",
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"model": "MiniMax-M3",
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"status": "complete",
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@@ -1,7 +1,8 @@
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---
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type: "Reference"
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title: "OpenWiki 现状 + 操作手册 (2026-07-27)"
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openwiki_generated: true
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description: "Activation status + operations manual for Robin's local OpenWiki knowledge base as of 2026-07-27. Documents 4 active connectors (HN + git-repo + Tavily + RAGFlow) and the per-source sync scripts (HN top+best feeds, Tavily web-search with TAVILY_API_KEY, git-repo Obsidian vault at /home/ldw/workspace, RAGFlow full-text retrieval at 10.10.10.254:9980). Captures the on-disk Gitea commit + push pattern."
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tags: [openwiki, operations, manual, activation, 2026-07-27]
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---
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# OpenWiki 现状 + 操作手册 (2026-07-27)
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@@ -5,11 +5,11 @@ okf_version: "0.1"
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# Files
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- [Commitments](commitments.md) - Active work tasks, follow-ups, approvals, and scheduled items extracted from sources (web-search, git-repo, literature flywheel-sync, etc.). Personal errands live in /personal-logistics.md instead.
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- [2026-07-16 工具链打通战报](memory-2026-07-16-tools-final.md)
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- [2026-07-16 工具链打通战报](memory-2026-07-16-tools-final.md) - After-action report on Robin's 2026-07-16 end-to-end toolchain integration: OpenWiki + Gitea + NocoDB + RAGFlow + Wiki.js + MiniMax code all wired together and working in production. Snapshot of the pre-flywheel-sync state — pre-dates the 2026-07-26 HN + Tavily launches and the 2026-07-29 Tavily cluster / 2026-08-08 literature flywheel-sync milestones.
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- [Open Questions](open-questions.md) - Active, Answered, and Stale unresolved questions about Robin's memory, recurring routines, people, projects, and wiki quality. Source-document TODOs and product questions live on their source pages instead.
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- [Personal Logistics](personal-logistics.md) - Personal errands, appointments, pickups, travel, household/life-admin deadlines, and other non-work logistics. Work commitments live in /commitments.md.
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- [Robin's Local Knowledge Base](quickstart.md) - OpenWiki entrypoint and orientation — Robin's personal knowledge base with 5 synthesis themes (organoid equipment, bioprinting, AI agents, local LLM, personal research), navigation map, current connector status, and backlog.
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- [OpenWiki 现状 + 操作手册 (2026-07-27)](README-ACTIVATION.md)
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- [OpenWiki 现状 + 操作手册 (2026-07-27)](README-ACTIVATION.md) - Activation status + operations manual for Robin's local OpenWiki knowledge base as of 2026-07-27. Documents 4 active connectors (HN + git-repo + Tavily + RAGFlow) and the per-source sync scripts (HN top+best feeds, Tavily web-search with TAVILY_API_KEY, git-repo Obsidian vault at /home/ldw/workspace, RAGFlow full-text retrieval at 10.10.10.254:9980). Captures the on-disk Gitea commit + push pattern.
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- [Themes](themes.md) - Recurring topics, signals, and trends observed across Robin's sources. Index of theme rows with confidence labels and source citations; details live on the linked source and synthesis pages.
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# Directories
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@@ -1,7 +1,8 @@
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---
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type: "Reference"
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title: "2026-07-16 工具链打通战报"
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openwiki_generated: true
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description: "After-action report on Robin's 2026-07-16 end-to-end toolchain integration: OpenWiki + Gitea + NocoDB + RAGFlow + Wiki.js + MiniMax code all wired together and working in production. Snapshot of the pre-flywheel-sync state — pre-dates the 2026-07-26 HN + Tavily launches and the 2026-07-29 Tavily cluster / 2026-08-08 literature flywheel-sync milestones."
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tags: [toolchain-integration, openwiki, gitea, nocodb, ragflow, wikijs, milimax-code, 2026-07-16]
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---
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# 2026-07-16 工具链打通战报
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+5
-2
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@@ -1,7 +1,8 @@
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---
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type: "Reference"
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title: "4-27 SOP 实战 vs 实现差异 (2026-07-27 Tasevska 2025 重做教训)"
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openwiki_generated: true
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description: "Lessons-learned capture from Robin's 2026-07-27 Tasevska 2025 EJPS deep-read redo — 9-step comparison table of 4-27 SOP范本 vs 7-27 凭印象实操 (Tasevska + Raji 2 篇) vs 4-27 SOP 走通 (Tasevska 重做); detailed PyMuPDF 嵌入图过滤 rules, Ollama 视觉 fallback chain, NocoDB v1 vs v2 protocol, and the 9-step mandatory format. Applies to every literature-deep-read invocation. Companion to `/sources/ldr-report-template.md`."
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tags: [literature-deep-read, sop-vs-implementation, lessons-learned, pymupdf, ollama, nocodb, 2026-08-13]
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---
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# 4-27 SOP 实战 vs 实现差异 (2026-07-27 Tasevska 2025 重做教训)
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@@ -1,7 +1,8 @@
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---
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type: "Reference"
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title: "OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)"
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openwiki_generated: true
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description: "Compact OpenWiki cheat-sheet that condenses the 2026-07-27 6-conversation walkthrough into a single ready-to-share document. Designed for one-shot delivery to any agent / colleague / customer / manager who asks 'what is OpenWiki?' — covers the core concept, structure, sync model, and 4 active connectors in one page."
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tags: [openwiki, cheat-sheet, reference, onboarding, 2026-07-27]
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---
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# OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)
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@@ -1,7 +1,8 @@
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---
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type: "Reference"
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title: "飞书邮箱 (Robin customer mailbox)"
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openwiki_generated: true
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description: "Planned cross-agent mailbox sync target for Robin's Feishu (飞书) mailbox (imap.feishu.cn:993 / imap.larksuite.com:993) — would let MiniMax code / Hermes recall 'what did Robin last discuss with customer X' from email metadata + summaries. Not yet provisioned — IMAP credentials + update script + crontab still pending Robin setup; this page documents the planned configuration and the sync policy that will be applied once provisioned."
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tags: [feishu-mail, evidence-index, source, mailbox, planned, 2026-08-13]
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---
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# 飞书邮箱 (Robin customer mailbox)
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+148
-103
@@ -1,9 +1,10 @@
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---
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||||
type: "Reference"
|
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title: "Git repo — evidence index (Obsidian vault, Robin)"
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description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD d97b39ed, 2026-08-10) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 2bc03f3, 2026-08-09). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
|
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description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 1737454, 2026-08-13). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
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resource: "~/.openwiki/connectors/git-repo/config.json"
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tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-10]
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tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-13]
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timestamp: 2026-08-13T18:08:25Z
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---
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||||
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# Git repo — evidence index (Obsidian vault + OpenWiki wiki)
|
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@@ -22,36 +23,39 @@ help locate things in the vault, not summarize their content.
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- **Configured repos:**
|
||||
- `obsidian-vault` → `/home/ldw/workspace` (Robin Obsidian vault, on
|
||||
`main`, HEAD `297f106d2b137af3480261052ff080cbc48d5b48` as of
|
||||
2026-08-12).
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||||
2026-08-12 — unchanged this fetch).
|
||||
- `openwiki-wiki` → `/home/ldw/.openwiki/wiki` (the OpenWiki knowledge
|
||||
base itself, on `main`, HEAD `c57ead4bf115dbca5101720db63a7730476d6894`
|
||||
as of 2026-08-12).
|
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base itself, on `main`, HEAD `1737454ad1b4f06ff9958cc9256c0c611262e44a`
|
||||
as of 2026-08-13).
|
||||
- **Auth:** local paths only — no remote, no credentials.
|
||||
- **Latest fetch:** `2026-08-12T18:08:49Z` (raw manifest
|
||||
`~/.openwiki/connectors/git-repo/raw/2026-08-12T18-08-49-138Z/manifest.json`).
|
||||
- **Latest fetch:** `2026-08-13T18:08:25Z` (raw manifest
|
||||
`~/.openwiki/connectors/git-repo/raw/2026-08-13T18-08-25-206Z/manifest.json`).
|
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- **Source config:** `~/.openwiki/connectors/git-repo/config.json`
|
||||
- **State:** `~/.openwiki/connectors/git-repo/state.json` records
|
||||
`latestIds` per repo; the 2026-08-12 fetch bumped `obsidian-vault`
|
||||
from `d97b39ed` (2026-08-10) to `297f106d` (2026-08-12, 4 new commits
|
||||
on the same Liang 2026 paper) and bumped `openwiki-wiki` from
|
||||
`2bc03f3` (2026-08-09) to `c57ead4` (2026-08-12, 2 new commits:
|
||||
`431ee6a` daily update 2026-08-12 + `c57ead4` sources-sync 2026-08-12).
|
||||
`latestIds` per repo; the 2026-08-13 fetch observed vault HEAD
|
||||
unchanged at `297f106d` (no new vault commits in the 24-hour window —
|
||||
the 2026-08-12 Liang 2026 cluster of 4 commits is still the most
|
||||
recent vault activity) and bumped `openwiki-wiki` from `c57ead4`
|
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(2026-08-12) to `1737454` (2026-08-13, 2 new commits: `8ddc6d9`
|
||||
daily update 2026-08-13 + `1737454` sources-sync 2026-08-13).
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||||
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||||
## obsidian-vault — working-tree status (2026-08-12)
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||||
## obsidian-vault — working-tree status (2026-08-13)
|
||||
|
||||
- **Branch:** `main`
|
||||
- **HEAD:** `297f106d2b137af3480261052ff080cbc48d5b48` (vault HEAD after
|
||||
the **Liang 2026 liver organoid fibrosis platform cluster** on
|
||||
2026-08-12)
|
||||
- **Ahead of origin/main:** 13 commits new since 2026-08-03 fetch (the
|
||||
2026-08-10 cluster of 12 was extended by the 2026-08-12 Liang 2026
|
||||
cluster of 4 commits on the same paper).
|
||||
- **Dirty:** yes — same 19 untracked file set as the 2026-08-10 fetch
|
||||
(8 `02-Clients/Agents/*2026-0807.md` distributor baseline files + the
|
||||
literature-stage files Robin works on between commits + 5 `文悦精读流水线`
|
||||
yml variants + `dify精读进度-20260805.md` + `rustdesk-selfhosted-2026-08-05.md`
|
||||
+ `literature_deepread_v6.py` etc.); the Liang 2026 file moved from
|
||||
untracked → committed via `e542c977`.
|
||||
- **HEAD:** `297f106d2b137af3480261052ff080cbc48d5b48` (vault HEAD
|
||||
**unchanged** since the 2026-08-12 fetch — 0 new commits in the
|
||||
24-hour window).
|
||||
- **Ahead of origin/main:** 13 commits new since 2026-08-03 fetch (same
|
||||
as the 2026-08-12 fetch — the 2026-08-12 Liang 2026 cluster of 4
|
||||
commits is still the most recent vault activity).
|
||||
- **Dirty:** yes — the 2026-08-12 untracked file set extended by **2
|
||||
new untracked files**: (a) `__pycache__/literature_deepread_v6.cpython-312.pyc`
|
||||
— Python compiled cache file from running `literature_deepread_v6.py`,
|
||||
build noise, ignored; (b) **`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`** —
|
||||
**first entry in a new `Review/` subfolder** under
|
||||
`04-Literature/Deep-Reads/` (the file is **untracked** — Robin has
|
||||
not yet committed it). This is structurally meaningful — see the
|
||||
Notable-entity section below.
|
||||
- **Working-tree status (raw manifest, abbreviated):**
|
||||
|
||||
| Status | Path |
|
||||
@@ -74,15 +78,21 @@ help locate things in the vault, not summarize their content.
|
||||
| `??` (untracked) | `Miao2025_Cell_v2.md` |
|
||||
| `??` (untracked) | `Miao2025_Cell_vascularized_organoid.md` |
|
||||
| `??` (untracked) | `Microbioreactor_2026_Rosero_FrontBioeng.md` |
|
||||
| `??` (untracked) | `__pycache__/literature_deepread_v6.cpython-312.pyc` — **NEW** (2026-08-13) Python compiled cache file (build noise from running `literature_deepread_v6.py`, ignored) |
|
||||
| `??` (untracked) | `dify精读进度-20260805.md` |
|
||||
| `??` (untracked) | `literature_deepread_v6.py` |
|
||||
| `??` (untracked) | `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — **NEW** (2026-08-13) **first entry in the new `Review/` subfolder** (Zhou 2023 computer vision + microfluidics — Robin deep-read in progress, untracked, future-commit candidate) |
|
||||
| `??` (untracked) | `obsidian-vault/rustdesk-selfhosted-2026-08-05.md` |
|
||||
| `??` (untracked) | `retinal_organoid_deep_read_2026-08-07.md` |
|
||||
| `??` (untracked) | `文悦精读流水线.yml` + v2/v3/v4/v5-clean variants |
|
||||
|
||||
The 8 untracked `*2026-0807.md` files in `02-Clients/Agents/` are the
|
||||
**2026-08-07 distributor baseline refresh** — see the "Distributor
|
||||
map refresh (2026-08-07)" section below for synthesis.
|
||||
map refresh (2026-08-07)" section below for synthesis. The 2 NEW
|
||||
untracked files this fetch are: (a)
|
||||
**`Review/zhou2023_computer_vision_microfluidics.md`** — first entry
|
||||
in a new deep-read subfolder (see Notable-entity entry below);
|
||||
(b) `__pycache__/...pyc` — build noise, ignored.
|
||||
|
||||
### Recent commits (latest first)
|
||||
|
||||
@@ -143,6 +153,15 @@ CelVivo ClinoReactor ⭐⭐⭐⭐ (单组织 3 轨道分通道灌流; TGFβ 时
|
||||
精确切换) + CelVivo PhaseHolographic 成像 ⭐⭐⭐ + 3Brain HD-MEA ⭐⭐⭐
|
||||
(肝-神经互作延伸).
|
||||
|
||||
**No new vault commits landed in the 2026-08-12T18:08Z →
|
||||
2026-08-13T18:08Z window** — the vault HEAD is unchanged at
|
||||
`297f106d`. The 2026-08-12 Liang 2026 cluster remains the most recent
|
||||
committed vault activity. One new uncommitted file appeared in the
|
||||
working tree this fetch:
|
||||
`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`
|
||||
— the **first entry in a new `Review/` subfolder** (see the
|
||||
Notable-entity section below).
|
||||
|
||||
The **2026-08-10 cluster** is a **frontmatter-hygiene + MOC-discipline
|
||||
sprint** rather than new external evidence: (a) **Phase A batch**
|
||||
(`d97b39ed`) standardized 6 deep-read notes with the structured 6-field
|
||||
@@ -166,37 +185,40 @@ indexed on [`/sources/literature.md`](/sources/literature.md). The
|
||||
`1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran
|
||||
on the same paper.
|
||||
|
||||
## openwiki-wiki — working-tree status (2026-08-12)
|
||||
## openwiki-wiki — working-tree status (2026-08-13)
|
||||
|
||||
- **Branch:** `main`
|
||||
- **HEAD:** `c57ead4bf115dbca5101720db63a7730476d6894` (the
|
||||
- **HEAD:** `1737454ad1b4f06ff9958cc9256c0c611262e44a` (the
|
||||
`chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts
|
||||
(sources-sync 2026-08-12)` commit recorded in this run's window).
|
||||
- **Working-tree state:** 10 modified files (uncommitted — pending next
|
||||
(sources-sync 2026-08-13)` commit recorded in this run's window).
|
||||
- **Working-tree state:** 8 modified files (uncommitted — pending next
|
||||
CLI orchestration). The dirty file set is the **synthesis-layer edits
|
||||
from the prior 2 source-specific runs in this same 24-hour window**:
|
||||
- Hackernews-1 (2026-08-12T18:00Z) — Wired organoid feature refresh on
|
||||
`/themes.md` `class-organoid-3d-bioprinting` Last seen → 2026-08-12;
|
||||
new "Latest update — 2026-08-12 18:00 UTC" section on
|
||||
`/sources/hackernews.md`; updated quickstart / index status; tag bump.
|
||||
- Web-search-1 (2026-08-12, third skip) — Tavily still disabled,
|
||||
`TAVILY_API_KEY` empty; new "2026-08-12 attempted update — skipped"
|
||||
section on `/sources/web-search.md`; updated quickstart status.
|
||||
- Daily source-sync (2026-08-12) — `/sources/nocodb.md` /
|
||||
`/sources/ragflow.md` / `/sources/seafile.md` / `/sources/wikijs.md`
|
||||
each got a 6-line counter increment + `openwiki_generated: true`
|
||||
placeholder frontmatter inserted.
|
||||
- Literature (2026-08-12) — `/sources/literature.md` got a single
|
||||
short Liang 2026 row appended (this row is a working-tree add for
|
||||
the next sources-sync commit; the full synthesis lives at the
|
||||
paper's vault path and on `/themes/01-organoid-equipment.md` /
|
||||
`/themes/05-robin-research.md`).
|
||||
from this same 24-hour window's prior run**:
|
||||
- Hackernews-1 (2026-08-13T18:00Z, prior run) — MCP Memory using OKF
|
||||
+ DeepSeek Harness + Codex in ChatGPT Linux desktop refresh on
|
||||
`/themes.md` `agent-memory-architecture` Last seen → 2026-08-13;
|
||||
new "Latest update — 2026-08-13 18:00 UTC" section on
|
||||
`/sources/hackernews.md`; updated quickstart / index status; tag
|
||||
bump. The HN-1 synthesis edits landed in commit `8ddc6d9` (daily
|
||||
update 2026-08-13) — but the residual 8 files in the dirty set
|
||||
carry the in-progress edits from the current git-repo-1 run that
|
||||
will land in the next CLI orchestration commit.
|
||||
- Daily source-sync (2026-08-13) — `1737454` source-sync touched
|
||||
`/sources/nocodb.md` / `/sources/ragflow.md` / `/sources/seafile.md`
|
||||
/ `/sources/wikijs.md` (4 source counters incremented). The other
|
||||
4 dirty files (`.last-update.json`, `quickstart.md`,
|
||||
`sources/hackernews.md`, `themes.md`) carry the synthesis-layer
|
||||
edits from the prior HN-1 run that landed *after* `1737454`
|
||||
committed — they were touched during the HN-1 2026-08-13T18:00Z
|
||||
synthesis pass and are pending the next CLI commit.
|
||||
- **Auth:** local path only — no remote, no credentials.
|
||||
|
||||
### Recent commits (latest first)
|
||||
|
||||
| Date | Hash | Note |
|
||||
| --- | --- | --- |
|
||||
| 2026-08-13 | `1737454` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-13) |
|
||||
| 2026-08-13 | `8ddc6d9` | chore: daily update 2026-08-13 (commitment + quickstart + sources/literature + sources/web-search + themes/01-organoid-equipment + themes/05-robin-research from the HN-1 2026-08-13 synthesis pass) |
|
||||
| 2026-08-12 | `c57ead4` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-12) |
|
||||
| 2026-08-12 | `431ee6a` | chore: daily update 2026-08-12 |
|
||||
| 2026-08-11 | `b64ae41` | lit: PMID 41536916 Bioactive Materials AIVOs 综述 (Wiki.js 1711) |
|
||||
@@ -254,9 +276,9 @@ when the synthesis pipeline catches up.
|
||||
|
||||
| Window (UTC) | Vault | Wiki |
|
||||
| --- | --- | --- |
|
||||
| 2026-08-11T18:00:00Z → 2026-08-12T18:08:49Z | HEAD `d97b39ed` → `297f106d` (4 new commits, all on Liang 2026 liver organoid fibrosis paper deep-read) | HEAD `2bc03f3` → `c57ead4` (2 new commits; 6 commits since prior fetch also recorded here: daily + sources-sync on 2026-08-11; literature deep-read cycle on PMID 42041571 OVB-organoids + 3 2026-08-11 PMID entries) |
|
||||
| **Net new external evidence** | **Liang Y et al. (2026) Sci Rep DOI 10.1038/s41598-026-42990-2** — mouse liver organoid 3-轨道 (Hep/Cho/HSC) + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型; Wiki.js Id=1716, NocoDB Id=770 | none — synthesis layer only (HN-1 Wired organoid refresh + web-search-1 third skip) |
|
||||
| Untracked → committed migrations | `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (was untracked in 2026-08-10 fetch, now committed via `e542c977`) | none — all 10 dirty files (`.last-update.json`, `quickstart.md`, 4 × sources/{hackernews,web-search,literature,nocodb,ragflow,seafile,wikijs}.md, `themes.md`) are uncommitted synthesis edits awaiting the next CLI commit cycle |
|
||||
| 2026-08-12T18:08:49Z → 2026-08-13T18:08:25Z | HEAD `297f106d` → `297f106d` (**0 new commits**; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity) | HEAD `c57ead4` → `1737454` (2 new commits: `8ddc6d9` daily update 2026-08-13 + `1737454` sources-sync 2026-08-13) |
|
||||
| **Net new external evidence** | none on the vault side; **1 new untracked file** (`Review/zhou2023_computer_vision_microfluidics.md` — first entry in a new deep-read `Review/` subfolder; uncommitted) + 1 noise file (`__pycache__/...pyc`, ignored) | none — synthesis layer only (HN-1 2026-08-13 MCP Memory using OKF refresh; the HN-1 synthesis edits landed in `8ddc6d9`; this run's edits are pending the next CLI commit) |
|
||||
| Untracked → committed migrations | none | none — the 8 dirty files (`.last-update.json`, `quickstart.md`, `sources/hackernews.md`, `sources/nocodb.md`, `sources/ragflow.md`, `sources/seafile.md`, `sources/wikijs.md`, `themes.md`) are uncommitted synthesis edits from this run, awaiting the next CLI commit cycle |
|
||||
|
||||
## Vault navigation index
|
||||
|
||||
@@ -308,9 +330,12 @@ Markdown file counts per deep-read subfolder:
|
||||
| `Retinal/` | 1 |
|
||||
| `Microbioreactor/` | 1 (new as of 2026-08-07 — Rosero 2026 Front Bioeng Biotechnol) |
|
||||
| `Cells/` | 1 (new as of 2026-08-08 — Fernandez Vallone 2026 Cells THSDC) |
|
||||
| `Review/` | 1 (new as of 2026-08-13 — Zhou 2023 computer vision + microfluidics, **untracked**) |
|
||||
|
||||
Total ≈ 1,204 deep-read notes (+2 from the 2026-08-07 / 2026-08-08
|
||||
cluster: Microbioreactor 2026 + Cells 2026 Fernandez Vallone). CelVivo,
|
||||
Total ≈ 1,205 deep-read notes (+1 from the 2026-08-13 cluster:
|
||||
Review/ zhou2023 computer vision + microfluidics, **untracked** — only
|
||||
counts once committed). The 2026-08-07 / 2026-08-08 cluster (Microbioreactor
|
||||
+ Cells) remains the most recent committed deep-read additions. CelVivo,
|
||||
3Brain, Cellink, and the broad `Organoid/` bucket cover Robin's product
|
||||
KB per the wiki goal focus areas (类器官培养与设备, 3D 生物打印).
|
||||
|
||||
@@ -373,6 +398,7 @@ fields still 待补).
|
||||
|
||||
## Notable entities surfaced by the vault (structural hints only)
|
||||
|
||||
- **Review/ subfolder — first entry (2026-08-13, uncommitted)** — `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` is the **first file in a new `Review/` subfolder** under `04-Literature/Deep-Reads/`. The file is **untracked** (Robin has not yet committed it) so the synthesis is provisional, but the path naming convention (`zhou2023_computer_vision_microfluidics.md`) matches Robin's standard deep-read naming pattern (`author-year-keyword-keyword.md`). Likely content: Zhou et al. (2023) computer-vision + microfluidics cross-review paper — a **review-type** paper (rather than an original-research paper) that Robin is collecting as part of his broader organoid + microfluidic cross-anchor reading list. **Structural significance**: the `Review/` subfolder is new — none of the existing 19 subfolders (`Organoid/`, `Celvivo/`, `3Brain/`, `Cellink/`, `Organoid-List/`, `Product-Reports/`, `Brain/`, `Brain-Tumor/`, `Cancer/`, `Liver/`, `Other/`, `RegenMed/`, `3Brain MEA/`, `Cardiac/`, `Kidney/`, `Retinal/`, `Microbioreactor/`, `Cells/`) explicitly segregates review-type papers. A `Review/` subfolder signals Robin may be formalizing the review-paper stream separately from the original-research stream. **No synthesis routes** until the file is committed — the deep-read synthesis page + any vendor-mapping should land after Robin commits the file and the standard 8-step LDR pipeline publishes it to Wiki.js / NocoDB / SeaFile. Track on the next git-repo fetch whether (a) the file is committed, (b) the `Review/` subfolder accumulates additional entries, and (c) the standard page-946 9 项 SOP + page-934 修齐 alignment is applied.
|
||||
- **Liang 2026 liver organoid fibrosis platform (2026-08-12)** — `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (170 lines; `[[MOC-类器官与3D培养]]` already names this paper via `related:` back-link). The paper is **the net-new external evidence** this run (git-repo-1 2026-08-12) brought into the vault; see synthesis at `/themes/01-organoid-equipment.md` § CelVivo evidence (added 2026-08-12) and `/commitments.md` `liang-2026-celvivo-clinostar-positioning`. Single-paper LDR cycle: 4 commits (`e542c977` → `8699a154` → `aacba7aa` → `297f106d`) walked Robin's standard 3-stage SOP on the same file (186 lines → 105+/122- page 946 rewrite → page 934 修齐 micro-revisions). The 4-star "与我们的产品" table on the paper lists **CelVivo ClinoStar ⭐⭐⭐⭐** (P1-P10 长程扩增对应旋转培养 30+ 天无剪切; HSC 静止态在模拟微重力下 7+ 天维持) + **CelVivo ClinoReactor ⭐⭐⭐⭐** (单组织 3 轨道分通道灌流; TGFβ 时间程序精确切换) — **parallel CelVivo ClinoStar rating 5 to Miao 2025 v2's ClinoStar rating 5** from the 2026-08-08 flywheel-sync, but for liver organoid (long-term maturation + fibrosis modeling) rather than lung organoid (vascularization). 7 SeaFile Fig (Fig1-7) + 4-paper 参考文献 (Huch 2013 / Huch 2015 / Clevers 2016). Customer-entry: 药企临床前 (抗纤维化药筛) + 临床肝活检中心 (1-2 mg → 3 周药敏) + 学术 PI (2D vs 3D 旋转 efficiency). **MOC linkage**: the paper's `related:` field already names `[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) — confirming the MOC pattern is in active use on real deep-reads.
|
||||
- **CelVivo industrial customers program** — a dedicated subfolder under
|
||||
`05-Documents/Products/Celvivo/Industrial-Customers/` holds `CelVivo_中国工业
|
||||
@@ -454,43 +480,57 @@ fields still 待补).
|
||||
|
||||
## Synthesis policy for this source
|
||||
|
||||
- **This run (2026-08-12, git-repo-1 18:08Z):** 4 new vault commits
|
||||
landed in the 24-hour window — all on the **same single Liang 2026
|
||||
Sci Rep liver organoid paper**, walked through Robin's standard
|
||||
3-stage LDR cycle (`e542c977` adds the file → `8699a154` page 946 9
|
||||
项 SOP 重写版 → `aacba7aa` + `297f106d` page 934 修齐 micro-revisions).
|
||||
This is the **net-new external evidence** this run brings into the
|
||||
vault: **Liang Y et al. (2026) Sci Rep DOI 10.1038/s41598-026-42990-2**
|
||||
— mouse liver organoid 3-轨道 (Hep-Orgs + Cho-Orgs + HSC) +
|
||||
DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型 (EMT + Ki67↓ +
|
||||
stemness↓). Wiki.js Id=1716, NocoDB Id=770, PMID 41857098. Wiki
|
||||
edits this run: (a) `/sources/git-repo.md` (this page) — refreshed
|
||||
HEAD pointers, added 4 commits to the recent-commits table, added a
|
||||
new "Liang 2026 liver organoid fibrosis platform (2026-08-12)"
|
||||
Notable-entity entry, refreshed synthesis-policy section, updated
|
||||
openwiki-wiki working-tree status section; (b) `/themes/05-robin-research.md` — vault
|
||||
HEAD `d97b39ed` → `297f106d`, "Latest cluster (2026-08-10)" →
|
||||
"Latest cluster (2026-08-12)", added a new top-row entry to the
|
||||
30-day research-output table for the Liang 2026 cluster, updated
|
||||
the by-vendor CelVivo row to include the Liang 2026 ClinoStar
|
||||
rating-5 entry; (c) `/themes/01-organoid-equipment.md` — added
|
||||
Liang 2026 to the CelVivo evidence anchors (ClinoStar rating 4 for
|
||||
P1-P10 长程 + 旋转 30+ 天无剪切; ClinoReactor rating 4 for 单组织 3
|
||||
轨道分通道灌流 + TGFβ 时间程序; PhaseHolographic imaging rating 3;
|
||||
3Brain HD-MEA rating 3 for 肝-神经互作延伸); (d) `/commitments.md`
|
||||
— added `liang-2026-celvivo-clinostar-positioning` (Owner: me, fold
|
||||
Liang 2026 长程成熟 + 体外纤维化模型 story into CelVivo ClinoStar
|
||||
sales narrative; companion to existing `miao-2025-celvivo-clinostar-positioning`).
|
||||
**No `/open-questions.md` row, no `/personal-logistics.md` item** —
|
||||
the Liang 2026 paper is fully published and the synthesis is direct;
|
||||
no ambiguity that requires a memory-graph open question. No
|
||||
`/themes.md` row change (the Liang 2026 evidence is a single-paper
|
||||
flywheel-sync output, not a recurring signal — it routes into the
|
||||
existing `class-organoid-3d-bioprinting` and `china-cde-cell-gene-therapy-rules-2026`
|
||||
vendor theme evidence without needing a new theme row). The
|
||||
previous run (2026-08-10) was the prior frontmatter-hygiene +
|
||||
MOC-discipline sprint; the 2026-08-08 run was the substantive
|
||||
distributor / Liu-2026-roadmap / `_known_associations.md` update.
|
||||
- **This run (2026-08-13, git-repo-1 18:08Z):** **0 new vault commits**
|
||||
in the 24-hour window — the vault HEAD is unchanged at `297f106d`
|
||||
(the 2026-08-12 Liang 2026 4-commit LDR cluster remains the most
|
||||
recent vault activity). The only vault-side delta is **1 new
|
||||
untracked file**: `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`
|
||||
— the **first entry in a new `Review/` subfolder** under
|
||||
`04-Literature/Deep-Reads/` (see Notable-entity entry above). 1
|
||||
noise file (`__pycache__/...pyc`) is ignored. Wiki-side: **2 new
|
||||
wiki commits** landed (`8ddc6d9` daily update 2026-08-13 + `1737454`
|
||||
sources-sync 2026-08-13), advancing HEAD from `c57ead4` (2026-08-12)
|
||||
to `1737454` (2026-08-13). 8 dirty wiki files in the working tree
|
||||
(`.last-update.json` + `quickstart.md` + 4 × sources/{hackernews,
|
||||
nocodb, ragflow, seafile, wikijs}.md + `themes.md`) are
|
||||
synthesis-layer edits from the prior HN-1 2026-08-13 run that
|
||||
landed after `1737454` committed and are pending the next CLI
|
||||
orchestration commit. Wiki edits this run: (a) `/sources/git-repo.md`
|
||||
(this page) — refreshed HEAD pointers (vault HEAD unchanged,
|
||||
wiki HEAD `c57ead4` → `1737454`), refreshed the untracked-file
|
||||
enumeration with 2 NEW rows (`__pycache__/...pyc` + the new
|
||||
`Review/zhou2023_computer_vision_microfluidics.md`), refreshed the
|
||||
openwiki-wiki working-tree-status section to 2026-08-13, refreshed
|
||||
the recent-commits table with `8ddc6d9` + `1737454`, refreshed the
|
||||
Summary of last 24 hours table to reflect 0 vault commits / 2 wiki
|
||||
commits, added a new "Review/ subfolder — first entry (2026-08-13,
|
||||
uncommitted)" Notable-entity entry (structural significance of the
|
||||
new subfolder), refreshed the synthesis-policy section with this
|
||||
run's delta summary; (b) `/themes/05-robin-research.md` — added the
|
||||
new `Review/` subfolder row to the `04-Literature/Deep-Reads/`
|
||||
breakdown table, refreshed vault-snapshot metadata (latest fetch
|
||||
timestamp + raw-manifest path + working-tree state); (c)
|
||||
`/quickstart.md` — added the "Latest update — git-repo-1
|
||||
(2026-08-13T18:08Z)" paragraph ahead of the current
|
||||
"Latest update — hackernews-1 (2026-08-13T18:00Z)" paragraph; demoted
|
||||
the HN-1 paragraph to a prior-run reference; updated the Backlog
|
||||
git-repo entry to reflect the new untracked `Review/` file.
|
||||
**No `/commitments.md` row, no `/open-questions.md` row, no
|
||||
`/personal-logistics.md` item, no `/themes.md` row change** — the
|
||||
vault delta is a single uncommitted file, not a published artifact,
|
||||
and the existing 2026-08-12 Liang 2026 commitment /
|
||||
`class-organoid-3d-bioprinting` theme row already cover the
|
||||
structural evidence.
|
||||
- **Previous run (2026-08-12, git-repo-1 18:08Z):** 4 new vault commits
|
||||
on the **same single Liang 2026 Sci Rep liver organoid paper** walked
|
||||
through Robin's standard 3-stage LDR cycle (`e542c977` adds file →
|
||||
`8699a154` page 946 9 项 SOP 重写版 → `aacba7aa` + `297f106d`
|
||||
page 934 修齐 micro-revisions) — this was the **net-new external
|
||||
evidence** for that run. Wiki edits at that time are described in
|
||||
the synthesis-policy paragraph above; the canonical synthesis
|
||||
continues to live at `/themes/01-organoid-equipment.md`,
|
||||
`/themes/05-robin-research.md`, and `/commitments.md`
|
||||
`liang-2026-celvivo-clinostar-positioning`.
|
||||
- The vault is a knowledge base, not a live signal stream; durable
|
||||
per-document synthesis (paper deep reads, sales scripts, customer
|
||||
files) requires reading individual files, which is delegated to the
|
||||
@@ -499,21 +539,26 @@ fields still 待补).
|
||||
theme only when the connector observes a recurring workflow (e.g. weekly
|
||||
literature digest cadence, sales training iteration pattern) across multiple
|
||||
fetches.
|
||||
- **Process signal worth watching (2026-08-12):** (a) **Liang 2026's
|
||||
MOC linkage confirms the MOC pattern is in active use** — the new
|
||||
paper's `related:` field already names
|
||||
- **Process signal worth watching (2026-08-13):** (a) **New `Review/`
|
||||
subfolder signal** — Robin added a 20th subfolder under
|
||||
`04-Literature/Deep-Reads/` dedicated to review-type papers, with
|
||||
`zhou2023_computer_vision_microfluidics.md` as the first entry. If
|
||||
the subfolder accumulates ≥3 entries, this signals a formal
|
||||
review-paper stream is being built separately from the
|
||||
original-research stream; if it stays at 1 entry, it's a one-off.
|
||||
(b) **Liang 2026's MOC linkage confirms the MOC pattern is in active
|
||||
use** — the paper's `related:` field already names
|
||||
`[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) on the
|
||||
day of publication, not a future-state plan. This is a stronger
|
||||
signal than the prior "MOC `related:` lists future MOCs" framing
|
||||
implied. Track on the next git-repo fetch whether more papers
|
||||
acquire MOC `related:` back-links and whether MOC-3Brain-HD-MEA /
|
||||
MOC-Cellink-BIO-X land. (b) **Page 934 修齐 micro-revisions now
|
||||
appear on every new LDR cycle** — `297f106d` is the second paper
|
||||
(after `381fcbaa` OVB-organoids 2026-08-11) where Robin applied
|
||||
the H1 去括号 / 元数据 bold / 📄PDF 文件名 alignment. The pattern
|
||||
appears to be the new standard end-state. (c) **Phase A frontmatter
|
||||
batch rollout** is still paused (only 6 of ~1,204 deep-reads
|
||||
received the 6-field frontmatter); no progress this run.
|
||||
day of publication, not a future-state plan. Track on the next
|
||||
git-repo fetch whether more papers acquire MOC `related:` back-links
|
||||
and whether MOC-3Brain-HD-MEA / MOC-Cellink-BIO-X land. (c) **Page
|
||||
934 修齐 micro-revisions now appear on every new LDR cycle** —
|
||||
`297f106d` is the second paper (after `381fcbaa` OVB-organoids
|
||||
2026-08-11) where Robin applied the H1 去括号 / 元数据 bold /
|
||||
📄PDF 文件名 alignment. The pattern appears to be the new standard
|
||||
end-state. (d) **Phase A frontmatter batch rollout** is still
|
||||
paused (only 6 of ~1,204 deep-reads received the 6-field
|
||||
frontmatter); no progress this run.
|
||||
|
||||
## Next update
|
||||
|
||||
|
||||
+44
-4
@@ -2,7 +2,7 @@
|
||||
type: "Reference"
|
||||
title: "Hacker News — evidence index"
|
||||
description: "Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items."
|
||||
tags: [hackernews, evidence-index, source, 2026-08-12, 2026-08-10]
|
||||
tags: [hackernews, evidence-index, source, 2026-08-13, 2026-08-12, 2026-08-10]
|
||||
---
|
||||
|
||||
# Hacker News — evidence index
|
||||
@@ -15,10 +15,50 @@ Compact evidence trail for the Hacker News connector (`hackernews-1`, Robin-cura
|
||||
- **Backend:** public HN feeds (`top`, `new`) + Algolia HN search queries
|
||||
- **Auth:** none — public feeds
|
||||
- **Window:** last 24 hours
|
||||
- **Latest fetch:** `2026-08-12T18:00:30Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below)
|
||||
- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-08-12T18-00-01-956Z/hackernews-results.json` (current — one new low-engagement organoid signal, see 2026-08-12 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-10T18-00-02-327Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-10 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T18-00-01-989Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T03-14-40-856Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 03:15 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-07T12-29-44-173Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-07 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-03T18-00-02-766Z/hackernews-results.json` (earlier — material findings, see 2026-08-03 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-02T18-00-02-278Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-08-01T18-00-02-274Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-31T18-00-02-519Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-30T18-00-02-784Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-29T18-00-02-667Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-28T18-00-02-178Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-27T18-00-02-615Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-16-06-805Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-00-02-441Z/hackernews-results.json`
|
||||
- **Latest fetch:** `2026-08-13T18:00:30Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-08-12 18:00, 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below)
|
||||
- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-08-13T18-00-02-662Z/hackernews-results.json` (current — one directly-relevant `agent-memory-architecture` evidence (MCP Memory using OKF), see 2026-08-13 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-12T18-00-01-956Z/hackernews-results.json` (prior — one new low-engagement organoid signal, see 2026-08-12 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-10T18-00-02-327Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-10 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T18-00-01-989Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T03-14-40-856Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 03:15 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-07T12-29-44-173Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-07 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-03T18-00-02-766Z/hackernews-results.json` (earlier — material findings, see 2026-08-03 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-02T18-00-02-278Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-08-01T18-00-02-274Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-31T18-00-02-519Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-30T18-00-02-784Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-29T18-00-02-667Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-28T18-00-02-178Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-27T18-00-02-615Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-16-06-805Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-00-02-441Z/hackernews-results.json`
|
||||
|
||||
## Latest update — 2026-08-12 18:00 UTC
|
||||
## Latest update — 2026-08-13 18:00 UTC
|
||||
|
||||
- **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed returned 25 items, `best` feed returned 7; deduplication gave **27 unique items across both feeds** (5 overlap: `49285244` DeepSeek Harness developer preview, `49281916` Codex in ChatGPT desktop app for Linux preview, `49284774` Deutsche Bank yuan clearing, `49286341` Spaghettifying DRAM, `49285982` Gloomberb). The 6-query lane produced the hit table below; the connector completed normally at `fetchedAt: 2026-08-13T18:00:30.603Z` (24-hour window).
|
||||
- **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries.** All six Algolia searches (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`) returned `nbHits=0` in the 24 h window. A title/URL regex sweep across the 27 unique top+best items also turned up zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items. The "no material HN footprint for the 4 vendor lines" finding continues to hold — this is the third pull since 2026-08-07 to have a fully-zero Algolia lane (after the 2026-08-08 03:15 + 2026-08-08 18:00 pulls); the 2026-08-10 + 2026-08-12 pulls had Algolia hits that were all string-collision noise. The Tavily web-search lane remains the better signal for vendor news.
|
||||
- **Workflow lane:** **zero positive `openwiki` brand hits; zero `deepagents` hits.** `openwiki` and `deepagents` both returned `nbHits=0` — so the `openwiki-brand` watchlist row on `/themes.md` stays at Last seen 2026-07-16 and the `agent-memory-architecture` adjacency note for "OpenWiki brand signal" stays at Last seen 2026-07-29. The 27 unique top+best items include one **directly relevant** AI-agent item for the `agent-memory-architecture` theme — and six **adjacent, high-engagement AI-agent / inference / model-launch items** that touch Robin's broader agent-stack lane but stay adjacent-not-promoted under the brief's "low-engagement items are watchlist by default; promotion requires recurrence, strong engagement, or corroboration" rule **and** the `/themes.md` scope discipline ("open-weight AI never earns a `themes.md` row" + workflow-tooling priority LOW):
|
||||
- **49286073** "Show HN: MCP Memory – Fast Agent Memory Using Google's OKF and SQLite FTS5" (46 pts, 22 cmts, top feed, by `fellowgeek`, https://github.com/fellowgeek/mcp-memory). Show HN for a Model Context Protocol (MCP) server that implements agent-memory using Google's **Open Knowledge Format (OKF)** as the frontmatter schema and SQLite FTS5 as the retrieval backend. **This is the first Hacker News item in the post-2026-07-29 sweep that explicitly references Google's OKF frontmatter** — the same OKF schema that OpenWiki uses ([`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Cross-agent memory substrate: OpenWiki", and the `okf_version: "0.1"` bundle-root frontmatter at [`/index.md`](/index.md)). The implementation is small (Show HN surfacing by a single author, `fellowgeek`) and engagement is moderate (46 pts) — under the established "Watchlist promotion requires recurrence, strong engagement, or corroboration" rule, 46-pt engagement sits in the corroborate-but-not-strongly-confirm band. **However** the item matches an existing topic (`agent-memory-architecture`) AND corroborates the OKF frontmatter pattern that OpenWiki has used since at least the 2026-07-16 launch (`langchain-ai/openwiki` HN `49058424`, 96 pts) — so it promotes `agent-memory-architecture` Last seen → 2026-08-13 (not a new theme row, just a Last-seen + Evidence anchor refresh on the existing row). The MCP-server framing also touches the MCP-revision watchlist that originally drove the 2026-07-28 [`hermes-agent-v0-19-quicksilver`](/themes.md) MCP-related Evidence cell. See `### agent-memory-architecture (refreshed this run)` below. **No new `/commitments.md` entry** — the item is a Show HN surfacing rather than a vendor-direct release, and Robin's OpenWiki already uses OKF (per `/index.md` front matter `okf_version: "0.1"`), so the synthesis layer does not need a new follow-up.
|
||||
- **49285244** "DeepSeek Harness developer preview" (422 pts, 197 cmts, top+best, by `explosion-s`, https://deepseek.com/harness/en/). DeepSeek's developer preview for an "agent harness" — the orchestration layer over DeepSeek models for tool-using workflows. Strong topical fit to the AI-agent-inference lane and to the `MiniMax-m3` competitive-benchmarks strand (after the DeepSeek V4 Flash 0731 + DeepSeek V4 Pro 0813 + Tavily benchlm.ai comparison observations in this week-and-a-half). However, DeepSeek is an open-weight lab and the harness is an open-weight agent runtime, so per scope discipline ("open-weight AI never earns a `themes.md` row" + workflow-tooling priority LOW) the finding stays adjacent-not-promoted. **Third-party ANCHOR**: the 197-comment count exceeds the prior `49274600` DeepSeek V4 Pro 0813 (274 pts but 5 cmts) and `49214008` DeepSeek V4 Flash 0731 (494 pts); DeepSeek-side activity is real but still off-scope for themes.md. **Adjacent-not-promoted** per brief.
|
||||
- **49281916** "Codex in ChatGPT desktop app for Linux is now in preview" (394 pts, 269 cmts, top+best, by `OXPHOS`, https://community.openai.com/t/codex-in-chatgpt-desktop-app-for-linux-is-now-in-preview/1390027). OpenAI community post announcing the **Codex surface in the ChatGPT Linux desktop app** is now in preview. **Strongest adjacents to Robin's Codex CLI fallback** — Codex is part of Robin's named-stack fallback (per [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Codex CLI (fallback)") and the Linux desktop-app surface is a new Codex delivery channel that overlaps with Robin's Linux-using environment (WSL primary, plus the planned ITX 24h host — see `/commitments.md` `itx-24h-host-build-2026-q3`). However, (a) "Codex in ChatGPT desktop app" is a different surface from the "Codex CLI" fallback Robin currently references (CLI vs desktop-app channel), and (b) the established scope rule on Codex-wrapper/TUI changes keeps them adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself (per the 2026-07-27 / 2026-07-30 / 2026-08-03 / 2026-08-10 / 2026-08-12 traceability entries below). **Adjacent-not-promoted** per the scope rule. Flagged here because the 394-pt + 269-cmt engagement is high enough to surface in any HN digest even if the finding is not promoted. If Robin starts using the Codex-in-ChatGPT desktop app on Linux (instead of Codex CLI as fallback) on a future pull, the existing `Codex CLI (fallback)` section in [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Adjacent workflow signals (HN / Tavily)" or its "Codex CLI adoption question" backlog item could be revisited.
|
||||
- **49289112** "Gemini 3.7 Flash" (134 pts, 84 cmts, top feed, by `masont`, https://ai.google.dev/gemini-api/docs/models/gemini-3.7-flash). Google's Gemini 3.7 Flash release on the Gemini API. New model release; **not** on Robin's named daily-driver stack (Hermes / MiniMax-M3+H3 / OpenWiki / RAGFlow / NocoDB / SeaFile / Codex CLI). Adjacent to the LLM lane but off-scope per brief.
|
||||
- **49285327** "Choosing an AI model: one prompt, 11 models, different results" (115 pts, 56 cmts, top feed, by `Philpax`, https://www.netlify.com/blog/one-prompt-11-models-very-different-results/). Netlify blog comparison of 11 LLMs on a single prompt. Strongest adjacents to the competitive-benchmarking lane already captured on the `MiniMax-m3` row (DeepSeek V4 vs MiniMax M3 strand) — but the Netlify blog is a marketing-influenced comparison, not a primary benchmark. Adjacent-not-promoted per scope. If a future Netlify blog benchmarks the 11 models including MiniMax-M3 specifically, that becomes a direct item on the `MiniMax-m3` row.
|
||||
- **49285718** "I built a 500k-domain search engine for makers in a weekend for $10" (87 pts, 47 cmts, top feed, by `alexmorleyfinch`, https://alexmorleyfinch.github.io/marlin/history/v1/article/the_birth.html). Indie builder essay. Adjacent to the search-infra lane but not on Robin's stack. Off-scope per brief.
|
||||
- **49286357** "We eliminated 1,400 CVEs in NanoClaw's container images" (53 pts, 37 cmts, top feed, by `jtbarker`, https://www.echo.ai/blog/echo-xnanoclaw-under-the-hood). Echo.ai blog post on container-image CVE remediation. Adjacent to the AI-agent-infra lane (NanoClaw is an AI-customer-facing agent runtime) but **not** on Robin's named stack. Off-scope per brief.
|
||||
- **49288889** "Mistral OCR 4.1" (40 pts, 6 cmts, top feed, by `masont`, https://docs.mistral.ai/models/ocr-4-1). Mistral OCR 4.1 release. Adjacent to the OCR / document-understanding lane but not on Robin's named stack. Off-scope per brief.
|
||||
- **49283063** "Launch HN: Bullet (YC S26) – A Faster Coding Agent" (17 pts, 19 cmts, top feed, by `sukeesh`, https://www.codewithbullet.com). YC S26 coding-agent launch. Adjacent to the AI-coding-agent lane but off-scope per the brief (not on Robin's named stack; the established scope rule keeps generic coding-agent launches adjacent-not-promoted per the 2026-07-27 / 2026-07-30 / 2026-08-03 / 2026-08-10 traceability entries).
|
||||
- **49285770** "Ordinary Abundance" (80 pts, 28 cmts, top feed, by `mtwn`, https://ordinaryabundance.com/) — essay blog, off-scope.
|
||||
- **49286485** "Kubernetes on Oxide" (91 pts, 30 cmts, top feed, by `mitchellh`, https://oxide.computer/blog/kubernetes-on-oxide) — Oxide blog, off-scope infra.
|
||||
- **Other feed items not promoted:** 16 additional top/best items, all off-scope per the brief's scope filter — `49276574` "Delta" (645 pts, 237 cmts, best — Zed editor release, off-scope consumer IDE); `49286341` "Spaghettifying DRAM" (285 pts, 83 cmts, top — github drama on a code repo, off-scope); `49285982` "Gloomberb" (279 pts, 145 cmts, top — game, off-scope); `49284774` "Deutsche Bank becomes first foreign yuan clearing bank in Europe" (331 pts, 352 cmts, top — finance, off-scope); `49279928` "Principia Mathematica is modern and insightful" (259 pts, 137 cmts, best — essay, off-scope); `49286662` "I requested a copy of my data from McDonald's loyalty program" (135 pts, 157 cmts, top — privacy essay, off-scope); `49279638` "How art invented humanity" (36 pts, 5 cmts, top — humanities essay, off-scope); `49288296` "GoAccess" (7 pts, top — log analyzer, off-scope); `49279627` "The Indo-European Family Tree" (33 pts, 18 cmts, top — linguistics, off-scope); `49289512` "Choose Boring Technology (2015)" (8 pts, top — retro essay, off-scope); `49289465` "Donkey.bas is 45 Years Old – 131 line of Glory" (9 pts, 2 cmts, top — retro, off-scope); `49284697` "ATG (YC F25) Is Hiring Member of Technical Staff (Data Platform)" (1 pt — YC jobs, off-scope); `49289026` "Tocharian Online" (13 pts, top — linguistics, off-scope); `49288293` "We Have AI at Home Chapter 1: A Box of Scraps" (14 pts, 3 cmts, top — AI hardware essay, off-scope); `49286030` "Time to Move On: Querying Without Nulls and Bags" (40 pts, 10 cmts, top — arxiv database paper, off-scope). Engagement range 1–645 pts across the 16 items; none matches a Robin in-scope vendor / customer / application-domain / named-stack keyword.
|
||||
- **Synthesis result:** **one theme Last-seen refresh, no commitment row, no open-question row, no personal-logistics item.** The `agent-memory-architecture` row on `/themes.md` refreshes Last seen → 2026-08-13, Evidence count → 16+, plus a new evidence anchor for the `49286073` MCP Memory / Google's OKF Show HN (`/themes.md` row description extended with the new evidence + a new Evidence cell anchor). All six flag-for-traceability items stay adjacent-not-promoted under the existing scope discipline. **Key call**: `49286073` MCP Memory using Google's OKF is the **first corroborating HN item on the OKF-frontmatter-as-agent-memory-schema pattern** since the 2026-07-16 `langchain-ai/openwiki` brand signal and the 2026-07-29 Tavily OKF-cluster pulls — it directly maps to OpenWiki's own OKF usage at `/index.md` and to the `agent-memory-architecture` watchlist that has been accumulating Karpathy LLM Wiki + OKF + MCP since 2026-07-26. The 46-pt engagement is moderate, but the **direct OKF reference + Show HN surfacing + MCP-server delivery channel** makes it a stronger trigger than the 2-pt `49156055` verginglabs Markdown-wiki post (2026-08-03) or the 1-pt `49159148` governed/approval-gated-memory post (2026-08-03) in the prior sweep. The MCP Memory implementation is on the same OKF + FTS5 pattern as a single-author Show HN, so it does not constitute a repeat observation on a high-engagement vendor release — but it does constitute the first HN-side corroboration of the OKF+memory schema that OpenWiki has been using. The `class-organoid-3d-bioprinting` row stays at Last seen 2026-08-12 (refreshed last pull); this run's workflow-lane item surfaces from the feed rather than from the Algolia query lane.
|
||||
|
||||
| Query lane | Queries run | Qualifying results |
|
||||
| --- | --- | --- |
|
||||
| Life sciences / vendors | `organoid`, `CelVivo`, `3Brain`, `Cellink` | 0 (all six queries returned `nbHits=0`) |
|
||||
| AI workflow | `openwiki`, `deepagents` | 0 (both queries returned `nbHits=0`) |
|
||||
|
||||
Raw dump: `~/.openwiki/connectors/hackernews/raw/2026-08-13T18-00-02-662Z/hackernews-results.json`.
|
||||
|
||||
### agent-memory-architecture (refreshed this run)
|
||||
|
||||
- **49286073** — score 46 — top feed — "Show HN: MCP Memory – Fast Agent Memory Using Google's OKF and SQLite FTS5" by `fellowgeek` (https://github.com/fellowgeek/mcp-memory). Show HN for an MCP-server implementation that uses Google's **Open Knowledge Format (OKF)** as the canonical memory schema and SQLite FTS5 as the retrieval backend. Direct topical fit to the existing `agent-memory-architecture` theme (Last seen 2026-08-03, 15+ distinct sources per `/themes.md` row description) — and **the first Hacker News pull since 2026-07-16 to surface an item that explicitly names the OKF frontmatter format OpenWiki uses**. Engagement is 46 pts (moderate, above the 1-2-pt adjacent items in the 2026-08-03 sweep but below the 100+ pts threshold for high-engagement vendor releases) — enough to refresh Last seen on the existing row per the established pattern of "single-source mid-engagement + direct topical match + corroborates the existing pattern" (see the established rule for refreshing Last seen on the 2026-08-03 Hermes Agent v0.20.0 row at 1 pt + corroboration from the GitHub release tag), but not enough to launch a new theme row or commitment row. The MCP-server delivery channel aligns with the 2026-07-28 MCP-protocol revision (a related protocol-layer signal that already feeds the [`hermes-agent-v0-19-quicksilver`](/themes.md) row description). No follow-up commitment added; OpenWiki's own OKF usage at `/index.md` frontmatter (and at the per-concept frontmatter required by the OKF v0.1 schema) is already in place, so this item does not change Robin's workflow or trigger new documentation work.
|
||||
|
||||
### Flag-for-traceability: DeepSeek Harness, Codex on Linux desktop, Gemini 3.7 Flash, Mistral OCR — adjacent, off-scope
|
||||
|
||||
- **49285244** (422 pts top+best, 197 cmts) DeepSeek Harness developer preview — orchestration layer over DeepSeek models for tool-using workflows. Strongest DeepSeek-related signal of the pull (197-cmt engagement exceeds the prior DeepSeek V4 Pro 0813's 5 cmts), but DeepSeek is open-weight and the Harness is an open-weight agent runtime, so per scope discipline the finding stays adjacent-not-promoted. The DeepSeek-vs-MiniMax competitive lane is now 4 observations in 10 days (DeepSeek V4 Flash 0731 + Tavily benchlm.ai + DeepSeek V4 Pro 0813 + DeepSeek Harness developer preview) — if Hermes / MiniMax-side response (e.g. M3.5 release or new Headroom benchmark) on the same competitive pairing surfaces on a future pull, that becomes the trigger for an `MiniMax-m3-row-annex-competitive-benchmarks` description extension.
|
||||
- **49281916** (394 pts top+best, 269 cmts) Codex in ChatGPT desktop app for Linux — new Codex delivery channel in the ChatGPT Linux desktop app. Codex is on Robin's stack as fallback (per [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Codex CLI (fallback)") and the Linux desktop-app surface overlaps with Robin's Linux-using environment. However, "Codex in ChatGPT desktop app" is a different surface from "Codex CLI" (CLI vs desktop-app channel), and the established scope rule on Codex-wrapper/TUI changes keeps them adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself. **Adjacent-not-promoted** per scope.
|
||||
- **49289112** (134 pts top, 84 cmts) Gemini 3.7 Flash — Google Gemini API release; off-scope.
|
||||
- **49285327** (115 pts top, 56 cmts) Choosing an AI model: one prompt, 11 models, different results — Netlify blog comparison; off-scope.
|
||||
- **49288889** (40 pts top, 6 cmts) Mistral OCR 4.1 — Mistral model release; off-scope.
|
||||
- **49283063** (17 pts top, 19 cmts) Launch HN: Bullet (YC S26) – A Faster Coding Agent — YC S26 coding-agent launch; off-scope.
|
||||
- **49286357** (53 pts top, 37 cmts) NanoClaw container CVE elimination — AI-agent-infra adjacent; off-scope.
|
||||
|
||||
## Update — 2026-08-12 18:00 UTC
|
||||
|
||||
- **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed returned 25 items, `best` feed returned 10; deduplication gave **30 unique items across both feeds** (5 overlap: `49271994` AI middle class software engineering, `49272832` Tailscale SQLite WAL-Reset bug, `49270953` 2026 Eclipse Webcams, `49273165` license plate warrant, `49274600` DeepSeek V4 Pro 0813). The 6-query lane produced the hit table below; the connector completed normally at `fetchedAt: 2026-08-12T18:00:30.849Z` (24-hour window).
|
||||
- **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries.** `CelVivo` returned `nbHits=0` (no stories indexed in 24h). `3Brain` returned 11 hits — one is a real organoid essay that was also surfaced by `organoid` (`49266068` "AI Is Dead. Organoids Are Alive", 5 pts, Wired — see "class-organoid-3d-bioprinting (refreshed this run)" below); the remaining 10 are string-collision noise on the substring "brain": `49263658` "The brain may be about to have its Ozempic moment" (114 pts, Economist — generic neuroscience essay on GLP-1-style brain drugs, outside Robin's 4 application domains); `49267390` "Dogs can tell when you're happy, sad or frustrated" (22 pts, Washington Post — consumer / veterinary neuroscience); `49272228` "Dog brains represent human facial expressions" (3 pts, Cell/iScience — veterinary); `49270499` "Big Tech Wants to Harvest Your Thoughts" (4 pts, Wired book excerpt — neurotech policy); `49271182` "Why I Play Board Games (and So Should You)" (4 pts, brainbaking.com — string hit on the "brainbaking" blog name); `49268526` "Brain scans show that dogs can distinguish various emotions in human faces" (1 pt, univie.ac.at — veterinary); `49269234` "New AI chip mimics the human brain's capacity for split-second motor control" (1 pt, LiveScience — brain-inspired computing chip, not 3Brain MEA / HD-MEA); `49269176` "My Terminal Workflow for Note-Taking, Data Engineering and Writing (Linux/macOS)" (1 pt, ssp.sh — "brain" tag slug, off-scope); `49273216` "Show HN: Kery – comments on your PR with a video of the feature working" (1 pt, github.com/Kery-HQ/Kery — `Kery-HQ` slug, off-scope). `Cellink` returned 4 hits — all string-collision noise on author-name / body-text fragments: `49273922` "Show HN: OJCP – an open protocol for agent-consumable job data" (8 pts, ojcp.dev — author `fraywing`, no relationship); `49275744` "Trump signs executive order calling for fewer childhood vaccines" (3 pts, CNBC — author `Fellw`, no relationship); `49265119` "Show HN: Supply-Wizard; Start Selling Data with an Easy Vendor Checklist" (3 pts, brickroad.network — string hit on "Checklist" / vendor terminology, no Cellink overlap); `49275608` "Development Mindset for AI Programming" (1 pt, no URL, author `kva`, no relationship). `organoid` returned 7 hits — **one real organoid essay** (`49266068` "AI Is Dead. Organoids Are Alive", 5 pts, Wired, by `Logans_Run`, https://www.wired.com/story/organoids-lab-grown-brains-neural-networks/ — see "class-organoid-3d-bioprinting (refreshed this run)" below) + six string-collision noise hits: `49275420` "Maintaining an organizational knowledge graph with an LLM and event sourcing" (2 pts, blog.arkency.com — "organizational" string); `49275020` "Ask HN: Responsible/trustable background check companies?" (4 pts, no URL — "organization" string); `49271578` "Show HN: Rekall – an Ableton Live project management companion application" (5 pts, rekall.machinelies.eu — author `iamsaitam`, "organization" string); `49270304` "Show HN: BentoDesk – Elegant Windows desktop organizer powered by Rust" (3 pts, github.com/ZRainbow1275/bentodesk — "organizer" string); `49266230` "Self-contained agents that self-organize" (3 pts, antigma.ai — "self-organize" string); `49264601` "Best Agent Gateways for Healthcare Organizations 2026" (1 pt, mintmcp.com — "Organizations" string). A title/URL regex sweep across the 30 unique top+best items also turned up zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items. The "no material HN footprint for the 4 vendor lines" finding still holds; the Tavily web-search lane remains the better signal for vendor news.
|
||||
|
||||
+17
-17
@@ -1,28 +1,28 @@
|
||||
# Files
|
||||
|
||||
- [4-27 SOP 实战 vs 实现差异 (2026-07-27 Tasevska 2025 重做教训)](2026-07-27-4-27-sop-vs-implementation.md)
|
||||
- [4-27 SOP 实战 vs 实现差异 (2026-07-27 Tasevska 2025 重做教训)](2026-07-27-4-27-sop-vs-implementation.md) - Lessons-learned capture from Robin's 2026-07-27 Tasevska 2025 EJPS deep-read redo — 9-step comparison table of 4-27 SOP范本 vs 7-27 凭印象实操 (Tasevska + Raji 2 篇) vs 4-27 SOP 走通 (Tasevska 重做); detailed PyMuPDF 嵌入图过滤 rules, Ollama 视觉 fallback chain, NocoDB v1 vs v2 protocol, and the 9-step mandatory format. Applies to every literature-deep-read invocation. Companion to `/sources/ldr-report-template.md`.
|
||||
- [Agents 代理商档案索引 — 跨 agent CRM 同步](agents.md) - Cross-agent index of the Obsidian vault 02-Clients/Agents/* profiles (which agents Robin is actively working with, mapped by vendor product line). Base identity only — sensitive fields (phone / WeChat / email / end-customer list / opportunity value) live only in the private vault. Updated 2026-08-07 with _known_associations.md product-line → agent → end-customer mapping.
|
||||
- [全国经销商地图 (2026-08-07 时点)](distributors-china-2026.md) - Compact index of Robin's 2026-08-07 China distributor baseline (259 dealers across 7 regions, replacing 261 in the 2026-07-24 baseline) plus the new product-association index _known_associations.md. Surfaces CelVivo ClinoStar → 济南成全 + FemtoBiomed CellShot → 9X Bio → TriArm Therapeutics chain. Routes pricing-sensitive fields to the private Obsidian vault per /sources/agents.md privacy rule.
|
||||
- [飞书邮箱 (Robin customer mailbox)](feishu-mail.md)
|
||||
- [Git repo — evidence index (Obsidian vault, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD d97b39ed, 2026-08-10) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 2bc03f3, 2026-08-09). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
|
||||
- [飞书邮箱 (Robin customer mailbox)](feishu-mail.md) - Planned cross-agent mailbox sync target for Robin's Feishu (飞书) mailbox (imap.feishu.cn:993 / imap.larksuite.com:993) — would let MiniMax code / Hermes recall 'what did Robin last discuss with customer X' from email metadata + summaries. Not yet provisioned — IMAP credentials + update script + crontab still pending Robin setup; this page documents the planned configuration and the sync policy that will be applied once provisioned.
|
||||
- [Git repo — evidence index (Obsidian vault, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 1737454, 2026-08-13). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
|
||||
- [Hacker News — evidence index](hackernews.md) - Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items.
|
||||
- [文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件)](ldr-report-template.md)
|
||||
- [Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)](literature-cel-bosnjakovic-2025-pah-deepread.md)
|
||||
- [CelVivo 2026 脑类器官白皮书《Breaking the Bias》精读索引](literature-celvivo-brain-whitepaper-2026.md)
|
||||
- [文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件)](ldr-report-template.md) - Master template for Robin's literature-deep-read (LDR) pipeline — consolidates 4 literature skills (`literature-deep-read` / `research` / `review` / `curation-for-sales`) into a single 8-rule + 3-trigger + 5-section "真适合浏览" report format. Synthesized from 4-27 SOP范本 + 7-27 实战 lessons (Tasevska / Raji / Bosnjakovic). Triggers "精读吧" / "发 wikijs" / "入库" / "A" / Id/DOI/PMID/PDF signals into 4-step精简 or 8-step完整 flows. PDF全文必传 + PyMuPDF xref去重 + 9项强制 + SeaFile hostname `fb.biokingdom.top` + NocoDB v1 JSON + 3张真图 + `journal-year-topic` 报告路径.
|
||||
- [Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)](literature-cel-bosnjakovic-2025-pah-deepread.md) - Deep-read synthesis of Bosnjakovic A et al. 2025 bioRxiv preprint (DOI 10.1101/2025.07.10.663939v1, 2025-07-10) — 21-day mature HepG2 3D spheroids with graded non-cytotoxic BaP + BBF (PAH代表物) exposure for metabolomics biomarker discovery. Robin's connection: 3D spheroid protocol maps directly onto CelVivo ClinoStar dynamic culture; supports PAH exposure metabolomics positioning for hepatotoxicity / NAFLD modeling applications. 精读 2026-07-27.
|
||||
- [CelVivo 2026 脑类器官白皮书《Breaking the Bias》精读索引](literature-celvivo-brain-whitepaper-2026.md) - Deep-read synthesis of CelVivo ApS (Denmark) 2026 whitepaper 'Breaking the Bias: Addressing the challenges facing optimal neural organoid development' (16 pages, translated + 精读 2026-07-28). Synthesizes CelVivo's positioning on neural organoid long-term culture and the clinical-translation path. Direct vendor-channel evidence for the CelVivo ClinoStar / ClinoReactor portfolio on brain organoid applications — companion to academic literature flywheel-sync.
|
||||
- [Liu 2026 — shape-conformal porous frameworks for full coverage of neural organoid electrophysiology (Nat Biomed Eng, Rogers Lab)](literature-liu-2026-nbme-shape-conformal-organoid-deepread.md) - Deep-read synthesis of Liu N et al. (2026) Nature Biomedical Engineering — shape-conformal porous framework + adaptive genetic algorithm + flexible-electronics microlattice for full-surface (>90%) neural organoid electrophysiology at 3000-8000 channels per organoid (vs 200-1000 traditional MEA); weeks-long stable recording; epilepsy/AD disease modeling.
|
||||
- [Miao 2025 — co-development of mesoderm and endoderm enables organotypic vascularization in lung and gut organoids (Cell v2)](literature-miao-2025-cell-vascularization-v2-deepread.md) - Deep-read synthesis of Miao Y et al. (2025) Cell v2 — single 3D EB co-induction of mesoderm+endoderm yields vHLPO with 7% ECs vs traditional 0%; FOXF1 mutation ACDMPV disease modeling; lung + gut organoid vascularization.
|
||||
- [Raji 2026 (hMOs + 3Brain HD-MEA) — 7-27 增补版 (跟 7-01 矩阵集成)](literature-raji-2026-deepread.md)
|
||||
- [Raji 2026 (hMOs + 3Brain HD-MEA) — 7-27 增补版 (跟 7-01 矩阵集成)](literature-raji-2026-deepread.md) - Deep-read synthesis of Raji H, Bertoli F, Perez MJ, Lam A, Volpicelli-Daley LA, Deleidi M. 2026 Molecular Psychiatry (Nature 子刊, s41380-026-03667-4, DOI 10.1038/s41380-026-03667-4, IF 11) — human midbrain organoids (hMOs) with WNT modulation, dopaminergic neuron differentiation, bioreactor culture, and 3Brain HD-MEA electrophysiology for Parkinson's disease modeling. 7-01 实战范本 (page 1622) + 7-27 增补版 integrated with 3-paper 3Brain MEA matrix (Raji / Pali / Wei) and 4 product-line complementarity chain (CelVivo ClinoStar + Cellink BIO X + 3Brain HD-MEA + FemtoBiomed CellShot).
|
||||
- [Sharma 2026 — vascularized retinal organoid RGC survival and maturation (Cell Stem Cell)](literature-sharma-2026-cell-stem-cell-vascularized-retinal-organoid-rgc-deepread.md) - Deep-read synthesis of Sharma K et al. (2026) Cell Stem Cell — transiently vascularized human retinal organoids with RGC 18.2% vs ctrl-RO 1.21% at week 18, W31 ON/OFF/ON-OFF light responses, C3 endothelial monolayer integration strategy.
|
||||
- [3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)](literature-tasevska-2025-deepread.md)
|
||||
- [3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)](literature-tasevska-2025-deepread.md) - Deep-read synthesis of Tasevska T et al. 2025 European Journal of Pharmaceutical Sciences 206:106998 (DOI 10.1016/j.ejps.2024.106998, 精读 2026-07-27) — first systematic SSE semi-solid extrusion vs DLP digital-light-processing comparison for sustained-release HCTZ (hydrochlorothiazide) tablets, with focus on SSE matching Cellink BIO X extrusion principle. Supports Robin's 3D-printed personalized-dose / sustained-release positioning and SSE extruder cross-sell narrative for Cellink BIO X accounts.
|
||||
- [Literature Deep-Reads — cross-agent deep-read index](literature.md) - Cross-agent index of Robin's literature deep-reads across the 4 vendor product lines (CelVivo / 3Brain / Cellink / Femtobiomed) and adjacent application domains. Backed by the Obsidian vault 04-Literature/Deep-Reads/ and the flywheel-sync pipeline; synthesis pages are linked per paper.
|
||||
- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md)
|
||||
- [OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)](OpenWiki%E9%80%9F%E6%9F%A5%E6%89%8B%E5%86%8C.md)
|
||||
- [RAGFlow 文档采样索引](ragflow-documents.md)
|
||||
- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md)
|
||||
- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md) - Auto-synced index of Robin's NocoDB literature and corporate databases (13 literature bases + 2 company bases) used by MiniMax code / Hermes cross-agent queries. Last sync 2026-08-12, total 6614 records. Companion layer to RAGFlow (PDF full-text), Obsidian (deep-reads), and OpenWiki (this synthesis index).
|
||||
- [OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)](OpenWiki%E9%80%9F%E6%9F%A5%E6%89%8B%E5%86%8C.md) - Compact OpenWiki cheat-sheet that condenses the 2026-07-27 6-conversation walkthrough into a single ready-to-share document. Designed for one-shot delivery to any agent / colleague / customer / manager who asks 'what is OpenWiki?' — covers the core concept, structure, sync model, and 4 active connectors in one page.
|
||||
- [RAGFlow 文档采样索引](ragflow-documents.md) - Document-level sample index of Robin's RAGFlow instance (http://10.10.10.254:9980) — 18 KBs / 32709 total docs / 401 sample entries (last sync 2026-08-03). Captures the 30-doc-per-request server-side limit + offset bug that forces 12 large KBs to single-page samples. Lets MiniMax code / Hermes see 'what's in each KB' without SQL queries; complements `/sources/ragflow.md` (KB-level health + counts).
|
||||
- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md) - Auto-synced health and KB index of Robin's RAGFlow instance (http://10.10.10.254:9980/) used for PDF full-text retrieval across 14 KBs. Last sync 2026-08-12 (landing 200, /api/v1/datasets 401). Companion layer to NocoDB (metadata) and OpenWiki (this synthesis index). Embedding / bge-reranker degraded since 2026-07-17 — NAS-side vector retrieval unavailable; metadata + chunk-level keyword grep still OK.
|
||||
- [Sources](README.md) - Per-connector evidence indexes and ingestion coverage for the local knowledge wiki; durable synthesis lives on canonical pages.
|
||||
- [RustDesk 自建 hbbs 完整配置笔记 (2026-08-05)](rustdesk-sop.md)
|
||||
- [CelVivo 销售弹药清单 (2026-07-16 实战索引)](sales-ammunition.md)
|
||||
- [SeaFile 大文件存储索引](seafile.md)
|
||||
- [CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照)](vault-mtime-snapshot-2026-07-16.md)
|
||||
- [RustDesk 自建 hbbs 完整配置笔记 (2026-08-05)](rustdesk-sop.md) - End-to-end deployment note for Robin's self-hosted RustDesk relay server (hbbs + hbbr) — Unraid NAS container (10.10.10.254) + OpenWrt reverse-proxy (10.10.10.252) + Tencent Light Cloud (43.160.207.177) + ITX client (192.168.31.14), with permanent password + key config. Supports remote control of the ITX 24h host (per `/commitments.md` `itx-24h-host-build-2026-q3`) and Robin's travel-laptop remote-access workflow.
|
||||
- [CelVivo 销售弹药清单 (2026-07-16 实战索引)](sales-ammunition.md) - Sales ammunition index for CelVivo ClinoStar / ClinoReactor — price-book SKUs (ClinoReactor 12-pack, ClinoStar, SP5D-24W, Demo kit), 8-protocol SOP series (ClinoReactor prep / media change / organoid gardening / speed-tuning / alginate / VitroGel), and 5 organ-specific application cases (HepG2, FTC-133, SCLC, TNBC, ClinoStar vs Orbital Shaker). Sources from RAGFlow CelVivo KB + CelVivo commercial KB; manually curated from Robin + Hermes 实战 lessons. Used by any agent answering CelVivo ClinoReactor pricing / demo / customer-pitch queries.
|
||||
- [SeaFile 大文件存储索引](seafile.md) - Auto-synced index of Robin's SeaFile large-file storage instance (http://10.10.10.254:9898/, public domain https://fb.biokingdom.top) used to host deep-read PDF + figure attachments. Last sync 2026-08-12. Forms the storage layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin).
|
||||
- [CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照)](vault-mtime-snapshot-2026-07-16.md) - Historical mtime snapshot of Robin's Obsidian vault from 2026-07-16 — captures CelVivo deep-read activity (0 new entries in the 7-day window 2026-07-09 → 2026-07-16; last activity 2026-07-05), 6 entries in the 30-day window, and ClinoReactor keyword hits. Provides a baseline reference for cross-agent vault state because WSL laptop vault is not directly readable from container agents. Pre-dates the 2026-08-07 distributor refresh + 2026-08-12 Liang 2026 / 2026-08-13 Review/ subfolder activity — superseded by `/themes/05-robin-research.md` for current vault state.
|
||||
- [Web Search Evidence](web-search.md) - Compact, source-backed evidence and ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news.
|
||||
- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md)
|
||||
- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md) - Auto-synced index of Robin's Wiki.js Biokingdom instance (http://10.10.10.254:3000/graphql) used for cross-agent document publishing. Last sync 2026-08-12, GraphQL sample union (5 orderBy) returns 83 unique pages but server-side cap on `pages.list(limit:N)` is ~50; real page count estimated ≥1704 (max page id). Forms the publishing layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin).
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "文献精读 Master Template (Robin 7-27 实战版, \"真适合浏览\" 1 文件)"
|
||||
openwiki_generated: true
|
||||
description: "Master template for Robin's literature-deep-read (LDR) pipeline — consolidates 4 literature skills (`literature-deep-read` / `research` / `review` / `curation-for-sales`) into a single 8-rule + 3-trigger + 5-section \"真适合浏览\" report format. Synthesized from 4-27 SOP范本 + 7-27 实战 lessons (Tasevska / Raji / Bosnjakovic). Triggers \"精读吧\" / \"发 wikijs\" / \"入库\" / \"A\" / Id/DOI/PMID/PDF signals into 4-step精简 or 8-step完整 flows. PDF全文必传 + PyMuPDF xref去重 + 9项强制 + SeaFile hostname `fb.biokingdom.top` + NocoDB v1 JSON + 3张真图 + `journal-year-topic` 报告路径."
|
||||
tags: [ldr-template, literature-deep-read, sop, reference, 2026-08-13]
|
||||
---
|
||||
|
||||
# 文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件)
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)"
|
||||
openwiki_generated: true
|
||||
description: "Deep-read synthesis of Bosnjakovic A et al. 2025 bioRxiv preprint (DOI 10.1101/2025.07.10.663939v1, 2025-07-10) — 21-day mature HepG2 3D spheroids with graded non-cytotoxic BaP + BBF (PAH代表物) exposure for metabolomics biomarker discovery. Robin's connection: 3D spheroid protocol maps directly onto CelVivo ClinoStar dynamic culture; supports PAH exposure metabolomics positioning for hepatotoxicity / NAFLD modeling applications. 精读 2026-07-27."
|
||||
tags: [literature-deep-read, celvivo-clinostar, hepG2, PAH, metabolomics, 3d-spheroid, 2026-08-13]
|
||||
---
|
||||
|
||||
# Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "CelVivo 2026 脑类器官白皮书《Breaking the Bias》精读索引"
|
||||
openwiki_generated: true
|
||||
description: "Deep-read synthesis of CelVivo ApS (Denmark) 2026 whitepaper 'Breaking the Bias: Addressing the challenges facing optimal neural organoid development' (16 pages, translated + 精读 2026-07-28). Synthesizes CelVivo's positioning on neural organoid long-term culture and the clinical-translation path. Direct vendor-channel evidence for the CelVivo ClinoStar / ClinoReactor portfolio on brain organoid applications — companion to academic literature flywheel-sync."
|
||||
tags: [literature-deep-read, celvivo, brain-organoid, clinostat, long-term-culture, whitepaper, vendor-channel, 2026-08-13]
|
||||
---
|
||||
|
||||
# CelVivo 2026 脑类器官白皮书《Breaking the Bias》精读索引
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "Raji 2026 (hMOs + 3Brain HD-MEA) — 7-27 增补版 (跟 7-01 矩阵集成)"
|
||||
openwiki_generated: true
|
||||
description: "Deep-read synthesis of Raji H, Bertoli F, Perez MJ, Lam A, Volpicelli-Daley LA, Deleidi M. 2026 Molecular Psychiatry (Nature 子刊, s41380-026-03667-4, DOI 10.1038/s41380-026-03667-4, IF 11) — human midbrain organoids (hMOs) with WNT modulation, dopaminergic neuron differentiation, bioreactor culture, and 3Brain HD-MEA electrophysiology for Parkinson's disease modeling. 7-01 实战范本 (page 1622) + 7-27 增补版 integrated with 3-paper 3Brain MEA matrix (Raji / Pali / Wei) and 4 product-line complementarity chain (CelVivo ClinoStar + Cellink BIO X + 3Brain HD-MEA + FemtoBiomed CellShot)."
|
||||
tags: [literature-deep-read, 3brain-hd-mea, midbrain-organoid, parkinson, dopaminergic-neuron, bioreactor, 2026-08-13]
|
||||
---
|
||||
|
||||
# Raji 2026 (hMOs + 3Brain HD-MEA) — 7-27 增补版 (跟 7-01 矩阵集成)
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)"
|
||||
openwiki_generated: true
|
||||
description: "Deep-read synthesis of Tasevska T et al. 2025 European Journal of Pharmaceutical Sciences 206:106998 (DOI 10.1016/j.ejps.2024.106998, 精读 2026-07-27) — first systematic SSE semi-solid extrusion vs DLP digital-light-processing comparison for sustained-release HCTZ (hydrochlorothiazide) tablets, with focus on SSE matching Cellink BIO X extrusion principle. Supports Robin's 3D-printed personalized-dose / sustained-release positioning and SSE extruder cross-sell narrative for Cellink BIO X accounts."
|
||||
tags: [literature-deep-read, cellink-bio-x, 3d-printing, HCTZ, sustained-release, SSE, DLP, 2026-08-13]
|
||||
---
|
||||
|
||||
# 3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)
|
||||
|
||||
@@ -1,3 +1,10 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "NocoDB 文献库索引 — 跨 agent 数据层"
|
||||
description: "Auto-synced index of Robin's NocoDB literature and corporate databases (13 literature bases + 2 company bases) used by MiniMax code / Hermes cross-agent queries. Last sync 2026-08-12, total 6614 records. Companion layer to RAGFlow (PDF full-text), Obsidian (deep-reads), and OpenWiki (this synthesis index)."
|
||||
tags: [nocodb, evidence-index, source, literature, cross-agent-data, 2026-08-13]
|
||||
---
|
||||
|
||||
# NocoDB 文献库索引 — 跨 agent 数据层
|
||||
|
||||
> 数据源: NocoDB 13 个文献库 + 2 个公司库 (实时,每次 OpenWiki cron 跑时更新)
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "RAGFlow 文档采样索引"
|
||||
openwiki_generated: true
|
||||
description: "Document-level sample index of Robin's RAGFlow instance (http://10.10.10.254:9980) — 18 KBs / 32709 total docs / 401 sample entries (last sync 2026-08-03). Captures the 30-doc-per-request server-side limit + offset bug that forces 12 large KBs to single-page samples. Lets MiniMax code / Hermes see 'what's in each KB' without SQL queries; complements `/sources/ragflow.md` (KB-level health + counts)."
|
||||
tags: [ragflow, evidence-index, source, kb-documents, sample, 2026-08-13]
|
||||
---
|
||||
|
||||
# RAGFlow 文档采样索引
|
||||
|
||||
@@ -1,3 +1,10 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "RAGFlow 全文检索索引 (Robin KB system)"
|
||||
description: "Auto-synced health and KB index of Robin's RAGFlow instance (http://10.10.10.254:9980/) used for PDF full-text retrieval across 14 KBs. Last sync 2026-08-12 (landing 200, /api/v1/datasets 401). Companion layer to NocoDB (metadata) and OpenWiki (this synthesis index). Embedding / bge-reranker degraded since 2026-07-17 — NAS-side vector retrieval unavailable; metadata + chunk-level keyword grep still OK."
|
||||
tags: [ragflow, evidence-index, source, kb-retrieval, cross-agent-data, 2026-08-13]
|
||||
---
|
||||
|
||||
# RAGFlow 全文检索索引 (Robin KB system)
|
||||
|
||||
> 数据源: RAGFlow (http://10.10.10.254:9980/) 14 个 KB 全文检索结果
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "RustDesk 自建 hbbs 完整配置笔记 (2026-08-05)"
|
||||
openwiki_generated: true
|
||||
description: "End-to-end deployment note for Robin's self-hosted RustDesk relay server (hbbs + hbbr) — Unraid NAS container (10.10.10.254) + OpenWrt reverse-proxy (10.10.10.252) + Tencent Light Cloud (43.160.207.177) + ITX client (192.168.31.14), with permanent password + key config. Supports remote control of the ITX 24h host (per `/commitments.md` `itx-24h-host-build-2026-q3`) and Robin's travel-laptop remote-access workflow."
|
||||
tags: [rustdesk, itx-24h-host, remote-access, sop, infra, 2026-08-13]
|
||||
---
|
||||
|
||||
# RustDesk 自建 hbbs 完整配置笔记 (2026-08-05)
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "CelVivo 销售弹药清单 (2026-07-16 实战索引)"
|
||||
openwiki_generated: true
|
||||
description: "Sales ammunition index for CelVivo ClinoStar / ClinoReactor — price-book SKUs (ClinoReactor 12-pack, ClinoStar, SP5D-24W, Demo kit), 8-protocol SOP series (ClinoReactor prep / media change / organoid gardening / speed-tuning / alginate / VitroGel), and 5 organ-specific application cases (HepG2, FTC-133, SCLC, TNBC, ClinoStar vs Orbital Shaker). Sources from RAGFlow CelVivo KB + CelVivo commercial KB; manually curated from Robin + Hermes 实战 lessons. Used by any agent answering CelVivo ClinoReactor pricing / demo / customer-pitch queries."
|
||||
tags: [sales-ammunition, celvivo, clinoreactor, clinostar, evidence-index, 2026-08-13]
|
||||
---
|
||||
|
||||
# CelVivo 销售弹药清单 (2026-07-16 实战索引)
|
||||
|
||||
@@ -1,3 +1,10 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "SeaFile 大文件存储索引"
|
||||
description: "Auto-synced index of Robin's SeaFile large-file storage instance (http://10.10.10.254:9898/, public domain https://fb.biokingdom.top) used to host deep-read PDF + figure attachments. Last sync 2026-08-12. Forms the storage layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin)."
|
||||
tags: [seafile, evidence-index, source, file-storage, cross-agent-data, 2026-08-13]
|
||||
---
|
||||
|
||||
# SeaFile 大文件存储索引
|
||||
|
||||
> 数据源: SeaFile (http://10.10.10.254:9898/) 共 N 个资料库
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照)"
|
||||
openwiki_generated: true
|
||||
description: "Historical mtime snapshot of Robin's Obsidian vault from 2026-07-16 — captures CelVivo deep-read activity (0 new entries in the 7-day window 2026-07-09 → 2026-07-16; last activity 2026-07-05), 6 entries in the 30-day window, and ClinoReactor keyword hits. Provides a baseline reference for cross-agent vault state because WSL laptop vault is not directly readable from container agents. Pre-dates the 2026-08-07 distributor refresh + 2026-08-12 Liang 2026 / 2026-08-13 Review/ subfolder activity — superseded by `/themes/05-robin-research.md` for current vault state."
|
||||
tags: [vault-snapshot, mtime, celvivo, historical-baseline, 2026-08-13]
|
||||
---
|
||||
|
||||
# CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照)
|
||||
|
||||
@@ -1,3 +1,10 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "Wiki.js 索引 — 跨 agent 文档发布层"
|
||||
description: "Auto-synced index of Robin's Wiki.js Biokingdom instance (http://10.10.10.254:3000/graphql) used for cross-agent document publishing. Last sync 2026-08-12, GraphQL sample union (5 orderBy) returns 83 unique pages but server-side cap on `pages.list(limit:N)` is ~50; real page count estimated ≥1704 (max page id). Forms the publishing layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin)."
|
||||
tags: [wikijs, evidence-index, source, document-publishing, cross-agent-data, 2026-08-13]
|
||||
---
|
||||
|
||||
# Wiki.js 索引 — 跨 agent 文档发布层
|
||||
|
||||
> 数据源: Wiki.js (http://10.10.10.254:3000/graphql) Biokingdom 实例
|
||||
|
||||
@@ -19,7 +19,7 @@ Index kept narrow by design: only themes that map to Robin's actual work (life-s
|
||||
| `MiniMax-m3` | MiniMax-M3 (1M context multimodal) HuggingFace model card + Twitter launch; the daily-driver inference provider behind every OpenWiki run and most of Robin's agent work; haimaker.ai July 2026 third-party eval ranks models for Hermes Agent usage; MyClaw.ai 2026-07-29 confirms M3 + M2.7 are the operational models for both OpenClaw and Hermes, with M3 supporting multimodal (image, video, music, speech, web search); pull 11 (2026-08-03) adds **unsloth/MiniMax-M3-GGUF** (HuggingFace 2026-08-01) confirming quantized local-LLM run path + **benchlm.ai "DeepSeek V4 Flash vs MiniMax M3: Benchmarks & Cost"** (2026-08-01) reframing M3 as "1M context window at $0.30…"; this 2026-08-03 HN pull surfaces the **MiniMax-H3 launch cluster** (item `49155629` 167pts top-feed ComfyUI Day-0 support with open weights + native audio + 2K video; item `49150583` 8pts "MiniMax-H3 weights are up" on HuggingFace model card; item `49150861` 2pts "Run MiniMax-H3 Locally with SGLang Diffusion on 2× RTX 5090s or 1× RTX Pro 6000" via LMSYS Twitter) — three distinct primary sources on the same day confirming H3 as the next frontier model release after M3 | 2026-07-16 | 2026-08-03 | source-backed | hackernews, web-search | 8+ | active | [HN: M3 model cluster + H3 launch cluster 2026-08-03](/sources/hackernews.md); [Tavily: Hermes Agent best-models eval](/sources/web-search.md); [Tavily: MyClaw OpenClaw vs MiniMax Agent 2026-07-29](/sources/web-search.md#2026-07-29-1803-pull); [Tavily: unsloth/MiniMax-M3-GGUF + BenchLM M3 vs DeepSeek V4 Flash 2026-08-03](/sources/web-search.md#2026-08-03-1808-pull) |
|
||||
| `hermes-agent-v0-19-quicksilver` | Hermes Agent v0.19 "Quicksilver" release (2026-07-25): first-token delay 4.3s → 0.9s, profile routing, live subagent, delivery ledger, 1Password/Bitwarden integration; relevant to Robin's daily-driver stack; MCP 2026-07-28 revision finalization (not backward-compatible) is a related protocol-layer signal; `configuration.md` (2026-07-26) documents the iteration-budget behavior change (April 2026: removed premature 70%/90% warnings, now single wrap-up at 500/500 with grace call) and `features/api-server.md` (2026-07-27) documents new `/v1/runs/{run_id}/stop` + `/approval` endpoints with MiniMax-M3 as the documented default model; pull 7 (2026-07-30) re-anchors `api-server.md` with a new per-profile `API_SERVER_KEY` breaking-change warning and a runs API for long-form sessions, and adds a third-party Hermes Atlas "State of Hermes Agent — July 2026" report; this 2026-08-03 HN pull surfaces **Hermes Agent v0.20.0** (item `49159200`, NousResearch GitHub releases tag `v2026.8.3`, 1pt on HN day-of — the next major version after v0.19 Quicksilver); pull 11 (2026-08-03) adds a **Hermes Agent 0.19.1 GitHub bug report** (NousResearch issues/77000, 2026-08-02, score 0.790, "gpt-5.6-luna + opencode-go") confirming patch-version activity on the v0.19.x track between the v0.19 Quicksilver release and the v0.20.0 release; Tavily answer text on the Hermes/M3 lane was partially fabricated ("release date of June 1, 2026") and should be ignored — the underlying GitHub issue URL is the credible signal | 2026-07-25 | 2026-08-03 | source-backed | hackernews, web-search | 10 | active | [Tavily: Hermes v0.19 Quicksilver + MCP revision 2026-07-27](/sources/web-search.md); [Tavily: hermes-agent configuration.md + api-server.md + MyClaw 2026-07-29](/sources/web-search.md#2026-07-29-1803-pull); [Tavily: api-server.md API_SERVER_KEY break + Hermes Atlas state report 2026-07-30](/sources/web-search.md#2026-07-30-1804-pull); [Tavily: Hermes Agent 0.19.1 GitHub bug report 2026-08-03](/sources/web-search.md#2026-08-03-1808-pull); [HN: Hermes Agent v0.20.0 release 2026-08-03](/sources/hackernews.md) |
|
||||
| `openwiki-brand` | `langchain-ai/openwiki` (96 pts) — same product family as Robin's OpenWiki; high-engagement on HN | 2026-07-16 | 2026-07-16 | source-backed | hackernews | 1 (+ 2 adjacent wrappers) | watchlist | [HN: openwiki cluster](/sources/hackernews.md#openwiki-brand-signal) |
|
||||
| `agent-memory-architecture` | Shared agent-memory architecture using Karpathy's LLM Wiki + Google's Open Knowledge Format (OKF) + MCP — let "every Local AI share ONE permanent memory"; this 2026-07-29 Tavily pull adds four more corroborated sources (Hackernoon Moorcheh.ai "Agent Memory Has a Lock-In Problem. Open Formats Are How We Fix It." with diffability / reviewability / auditability framing; Towards Data Science "Usage-Reinforced Decay Engine for AI Agent Memory" using Ebbinghaus forgetting curve; The Register / MinIO AIStor Memory for long-running multi-step workflows; HPCwire Exabase M-1 BEAM benchmark numbers 76.9% / 75.0% / 68.0% at 100K/1M/10M tokens) on top of the prior HN + Tavily sources; the Hackernoon piece is the strongest OpenWiki-aligning source yet; pull 7 (2026-07-30) adds arXiv 2607.24759v1 "A Templated Substrate for Heterogeneous Collaborative" + rohitg00 LLM Wiki v2 (extending Karpathy's LLM Wiki pattern with lessons from building agentmemory) + Pi `@zosmaai/pi-llm-wiki` package + MinIO AIStor Memory (HPCwire 2026-07-29 + SiliconANGLE 2026-07-30); pull 11 (2026-08-03) adds **akitaonrails/ai-memory `docs/research-karpathy-llm-wiki.md`** (GitHub 2026-07-28, score 0.601) — a third-party research write-up of the Karpathy LLM Wiki pattern — bringing the cluster to 15+ distinct sources | 2026-07-26 | 2026-08-03 | source-backed | hackernews, web-search | 15+ | active | [HN: 49059959, 49059889, 49060215](/sources/hackernews.md); [Tavily: LLM Wiki + OKF cluster 2026-07-28](/sources/web-search.md); [Tavily: Moorcheh.ai + TDS + MinIO + Exabase cluster 2026-07-29](/sources/web-search.md#2026-07-29-1803-pull); [Tavily: arXiv 2607.24759v1 + LLM Wiki v2 + Pi pi-llm-wiki + MinIO AIStor 2026-07-30](/sources/web-search.md#2026-07-30-1804-pull); [Tavily: akitaonrails/ai-memory research write-up 2026-08-03](/sources/web-search.md#2026-08-03-1808-pull) |
|
||||
| `agent-memory-architecture` | Shared agent-memory architecture using Karpathy's LLM Wiki + Google's Open Knowledge Format (OKF) + MCP — let "every Local AI share ONE permanent memory"; this 2026-07-29 Tavily pull adds four more corroborated sources (Hackernoon Moorcheh.ai "Agent Memory Has a Lock-In Problem. Open Formats Are How We Fix It." with diffability / reviewability / auditability framing; Towards Data Science "Usage-Reinforced Decay Engine for AI Agent Memory" using Ebbinghaus forgetting curve; The Register / MinIO AIStor Memory for long-running multi-step workflows; HPCwire Exabase M-1 BEAM benchmark numbers 76.9% / 75.0% / 68.0% at 100K/1M/10M tokens) on top of the prior HN + Tavily sources; the Hackernoon piece is the strongest OpenWiki-aligning source yet; pull 7 (2026-07-30) adds arXiv 2607.24759v1 "A Templated Substrate for Heterogeneous Collaborative" + rohitg00 LLM Wiki v2 (extending Karpathy's LLM Wiki pattern with lessons from building agentmemory) + Pi `@zosmaai/pi-llm-wiki` package + MinIO AIStor Memory (HPCwire 2026-07-29 + SiliconANGLE 2026-07-30); pull 11 (2026-08-03) adds **akitaonrails/ai-memory `docs/research-karpathy-llm-wiki.md`** (GitHub 2026-07-28, score 0.601) — a third-party research write-up of the Karpathy LLM Wiki pattern — bringing the cluster to 15+ distinct sources; **2026-08-13 HN pull** adds item `49286073` "Show HN: MCP Memory – Fast Agent Memory Using Google's OKF and SQLite FTS5" (46 pts, 22 cmts, github.com/fellowgeek/mcp-memory) — **the first HN item since the 2026-07-16 `langchain-ai/openwiki` brand signal to explicitly name Google's OKF frontmatter** (the same schema OpenWiki uses at `/index.md` frontmatter `okf_version: "0.1"` and across every concept page's per-page frontmatter), paired with an MCP-server delivery channel that touches the 2026-07-28 MCP-protocol revision watchlist already feeding [`hermes-agent-v0-19-quicksilver`](/sources/hackernews.md) Evidence cell — direct corroboration of the OKF+memory schema pattern rather than a new theme | 2026-07-26 | 2026-08-13 | source-backed | hackernews, web-search | 16+ | active | [HN: 49059959, 49059889, 49060215](/sources/hackernews.md); [HN: MCP Memory using Google's OKF 2026-08-13](/sources/hackernews.md#agent-memory-architecture-refreshed-this-run); [Tavily: LLM Wiki + OKF cluster 2026-07-28](/sources/web-search.md); [Tavily: Moorcheh.ai + TDS + MinIO + Exabase cluster 2026-07-29](/sources/web-search.md#2026-07-29-1803-pull); [Tavily: arXiv 2607.24759v1 + LLM Wiki v2 + Pi pi-llm-wiki + MinIO AIStor 2026-07-30](/sources/web-search.md#2026-07-30-1804-pull); [Tavily: akitaonrails/ai-memory research write-up 2026-08-03](/sources/web-search.md#2026-08-03-1808-pull) |
|
||||
|
||||
## Notes
|
||||
|
||||
|
||||
+16
-10
@@ -2,7 +2,8 @@
|
||||
type: "Reference"
|
||||
title: "Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)"
|
||||
description: "Synthesis page for Robin's personal research portfolio — Obsidian vault + literature deep-read pipeline + sales ammunition + China distributor map + active CRM profiles + work-rhythm snapshots. Output routes into vendor themes 01 (organoid-equipment) and 02 (bioprinting)."
|
||||
tags: [theme, research, vault, deep-read, sales, crm, life-sciences]
|
||||
tags: [theme, research, vault, deep-read, sales, crm, life-sciences, 2026-08-13]
|
||||
timestamp: 2026-08-13T18:08:25Z
|
||||
---
|
||||
|
||||
# Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)
|
||||
@@ -22,7 +23,7 @@ This is the synthesis page for **Robin 个人研究项目** — the durable body
|
||||
|
||||
```mermaid
|
||||
erDiagram
|
||||
VAULT["Obsidian vault (297f106d)"] ||--o{ DEEPREADS["Deep-read notes ~1,204"]
|
||||
VAULT["Obsidian vault (297f106d)"] ||--o{ DEEPREADS["Deep-read notes ~1,205"]
|
||||
VAULT ||--o{ TRAIN["Sales training (CelVivo赋能培训 v1-v9)"]
|
||||
VAULT ||--o{ SALES["Active sales pipeline (惠百生物 PO + 中间商)"]
|
||||
VAULT ||--o{ CRM["Distributor profiles (董慧群 + 待补)"]
|
||||
@@ -49,18 +50,19 @@ The diagram shows Robin's research substrate: a single Obsidian vault with 8 buc
|
||||
|
||||
## Knowledge substrate: Obsidian vault
|
||||
|
||||
Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08-12T18:08:49Z):
|
||||
Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08-13T18:08:25Z):
|
||||
|
||||
| Field | Value |
|
||||
| --- | --- |
|
||||
| Repo path | `/home/ldw/workspace` |
|
||||
| Branch | `main` |
|
||||
| HEAD | `297f106d2b137af3480261052ff080cbc48d5b48` (2026-08-12) |
|
||||
| Ahead of origin/main | 13 commits new since 2026-08-03 fetch (Fernandez Vallone 2026 + Microbioreactor 2026 + Liu 2026 v2-v11 + 4 经销商 hook 升级 + Wang 2024 Theranostics + **Phase A metadata batch + 2 sample runs** + **Liang 2026 liver organoid fibrosis platform 4-commit LDR cycle**); plus 19 untracked files in working tree |
|
||||
| HEAD | `297f106d2b137af3480261052ff080cbc48d5b48` (**unchanged** since 2026-08-12 fetch — 0 new vault commits in the 2026-08-13 24-hour window) |
|
||||
| Ahead of origin/main | 13 commits new since 2026-08-03 fetch (Fernandez Vallone 2026 + Microbioreactor 2026 + Liu 2026 v2-v11 + 4 经销商 hook 升级 + Wang 2024 Theranostics + **Phase A metadata batch + 2 sample runs** + **Liang 2026 liver organoid fibrosis platform 4-commit LDR cycle**); plus **25 untracked files** in working tree (added 2 since 2026-08-12: `__pycache__/...pyc` build noise + `Review/zhou2023_computer_vision_microfluidics.md` first entry in new `Review/` subfolder) |
|
||||
| Auth | local path only — no remote, no credentials |
|
||||
| Working-tree state | dirty (1 nested-submodule + 1 untracked dir + 19 untracked files including 8 new `02-Clients/Agents/区域-2026-0807.md`) |
|
||||
| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-08-12T18-08-49-138Z/manifest.json` |
|
||||
| **Latest cluster (2026-08-12)** | **Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3-轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型) |
|
||||
| Working-tree state | dirty (1 nested-submodule + 1 untracked dir + 25 untracked files including 8 new `02-Clients/Agents/区域-2026-0807.md` + the new `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder untracked file) |
|
||||
| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-08-13T18-08-25-206Z/manifest.json` |
|
||||
| **Latest cluster (2026-08-12, unchanged this fetch)** | **Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3-轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型) |
|
||||
| **Latest uncommitted file (2026-08-13)** | `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — **first entry in the new `Review/` subfolder**; review-type papers stream separately from original-research stream |
|
||||
|
||||
### Vault navigation index (top-level folders)
|
||||
|
||||
@@ -105,8 +107,11 @@ Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08
|
||||
| `Cardiac/` | 2 | cardiac organoid |
|
||||
| `Kidney/` | 2 | kidney organoid |
|
||||
| `Retinal/` | 1 | retinal organoid |
|
||||
| `Microbioreactor/` | 1 | Rosero 2026 Front Bioeng Biotechnol (added 2026-08-07) |
|
||||
| `Cells/` | 1 | Fernandez Vallone 2026 Cells THSDC (added 2026-08-08) |
|
||||
| `Review/` | 1 | Zhou 2023 computer vision + microfluidics (added 2026-08-13, **untracked**) |
|
||||
|
||||
Total ≈ 1,203 deep-read notes (the 2026-08-12 Liang 2026 liver organoid fibrosis platform file is the net-new entry since the 2026-08-10 fetch). The 4 vendor subfolders (Celvivo / 3Brain / Cellink / Organoid) cover the canonical product KB per the wiki goal focus areas.
|
||||
Total ≈ 1,204 deep-read notes on `main` + **1 untracked entry in the new `Review/` subfolder** (`zhou2023_computer_vision_microfluidics.md`, 2026-08-13 — first review-type subfolder; future-commit candidate). The 4 vendor subfolders (Celvivo / 3Brain / Cellink / Organoid) cover the canonical product KB per the wiki goal focus areas.
|
||||
|
||||
## Literature deep-read (LDR) pipeline
|
||||
|
||||
@@ -216,8 +221,9 @@ By vendor (30-day mtime):
|
||||
| Cellink | 2026-07-27 (Tasevska 2025) | +Liu 2026 (microlattice fabrication rating 5 adjacent) |
|
||||
| Adjacent (no vendor) | 2026-08-08 (Sharma 2026 retinal vascularization) | +Sharma 2026 (retinal organoid application domain) |
|
||||
| (Process discipline) | 2026-08-10 (Phase A batch + first MOC) | +6 deep-reads received 6-field frontmatter; +first MOC `MOC-类器官与3D培养.md` created; +7 image alt descriptions on Wang 2024 — no new external evidence |
|
||||
| (Subfolder expansion, uncommitted) | 2026-08-13 (new `Review/` subfolder) | +1 untracked file `Review/zhou2023_computer_vision_microfluidics.md` (first review-type subfolder — review papers stream separately from original research) |
|
||||
|
||||
The pipeline is **vendor-balanced** — CelVivo, 3Brain, Cellink each have a recent deep read, and the 2026-08-08 flywheel-sync adds **3 papers spanning all 3 primary vendors + the retinal organoid application domain** (Sharma), all 3 rated 4-5 on at least one vendor's product line. The 2026-08-10 cluster is **process discipline** (Phase A metadata batch + first MOC creation + Wang 2024 alt-description sample), not new external evidence — the 6 deep-reads already existed on `main`; the 3 commits only normalize their metadata and add a knowledge-graph index layer. The 2026-08-12 cluster adds **net-new external evidence**: Liang 2026 Sci Rep liver organoid fibrosis platform (4-commit LDR cycle on a single paper, CelVivo ClinoStar ⭐⭐⭐⭐ + ClinoReactor ⭐⭐⭐⭐); this is the **first paper on `main` whose `related:` field already names `[[MOC-类器官与3D培养]]` on the day of publication**, confirming the MOC pattern is in active use on real deep-reads (vs the prior 2026-08-10 "MOC `related:` lists future MOCs" framing which was only prospective). The **first entry in the new NocoDB table `Robin_Picked_Papers`** is Liu 2026 (created 2026-08-08 per Robin instruction to capture papers Robin hand-picks / provides outside the regular PubMed triage). The **first MOC** `MOC-类器官与3D培养.md` is the start of a Map-of-Content layer Robin appears to be building (the MOC's own `related:` already names `[[MOC-3Brain-HD-MEA]]` as the next planned MOC).
|
||||
The pipeline is **vendor-balanced** — CelVivo, 3Brain, Cellink each have a recent deep read, and the 2026-08-08 flywheel-sync adds **3 papers spanning all 3 primary vendors + the retinal organoid application domain** (Sharma), all 3 rated 4-5 on at least one vendor's product line. The 2026-08-10 cluster is **process discipline** (Phase A metadata batch + first MOC creation + Wang 2024 alt-description sample), not new external evidence — the 6 deep-reads already existed on `main`; the 3 commits only normalize their metadata and add a knowledge-graph index layer. The 2026-08-12 cluster adds **net-new external evidence**: Liang 2026 Sci Rep liver organoid fibrosis platform (4-commit LDR cycle on a single paper, CelVivo ClinoStar ⭐⭐⭐⭐ + ClinoReactor ⭐⭐⭐⭐); this is the **first paper on `main` whose `related:` field already names `[[MOC-类器官与3D培养]]` on the day of publication**, confirming the MOC pattern is in active use on real deep-reads (vs the prior 2026-08-10 "MOC `related:` lists future MOCs" framing which was only prospective). The **first entry in the new NocoDB table `Robin_Picked_Papers`** is Liu 2026 (created 2026-08-08 per Robin instruction to capture papers Robin hand-picks / provides outside the regular PubMed triage). The **first MOC** `MOC-类器官与3D培养.md` is the start of a Map-of-Content layer Robin appears to be building (the MOC's own `related:` already names `[[MOC-3Brain-HD-MEA]]` as the next planned MOC). The 2026-08-13 cluster (no vault commits, 1 new untracked file) **adds a new `Review/` subfolder to the deep-read tree** — Robin appears to be expanding the folder taxonomy to separate review-type papers from original-research papers; whether this is a one-off subfolder or the start of a recurring folder pattern is a watchlist item for the next git-repo fetch.
|
||||
|
||||
## Sales ammunition pipeline
|
||||
|
||||
|
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Reference in New Issue
Block a user