diff --git a/.last-update.json b/.last-update.json index b321b64..dea1b2b 100644 --- a/.last-update.json +++ b/.last-update.json @@ -1,5 +1,5 @@ { - "updatedAt": "2026-08-12T18:16:59.273Z", + "updatedAt": "2026-08-13T18:18:06.096Z", "command": "update", "model": "MiniMax-M3", "status": "complete", diff --git a/README-ACTIVATION.md b/README-ACTIVATION.md index 2a3d457..03472ac 100644 --- a/README-ACTIVATION.md +++ b/README-ACTIVATION.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "OpenWiki 现状 + 操作手册 (2026-07-27)" -openwiki_generated: true +description: "Activation status + operations manual for Robin's local OpenWiki knowledge base as of 2026-07-27. Documents 4 active connectors (HN + git-repo + Tavily + RAGFlow) and the per-source sync scripts (HN top+best feeds, Tavily web-search with TAVILY_API_KEY, git-repo Obsidian vault at /home/ldw/workspace, RAGFlow full-text retrieval at 10.10.10.254:9980). Captures the on-disk Gitea commit + push pattern." +tags: [openwiki, operations, manual, activation, 2026-07-27] --- # OpenWiki 现状 + 操作手册 (2026-07-27) diff --git a/index.md b/index.md index 4005277..4b57e85 100644 --- a/index.md +++ b/index.md @@ -5,11 +5,11 @@ okf_version: "0.1" # Files - [Commitments](commitments.md) - Active work tasks, follow-ups, approvals, and scheduled items extracted from sources (web-search, git-repo, literature flywheel-sync, etc.). Personal errands live in /personal-logistics.md instead. -- [2026-07-16 工具链打通战报](memory-2026-07-16-tools-final.md) +- [2026-07-16 工具链打通战报](memory-2026-07-16-tools-final.md) - After-action report on Robin's 2026-07-16 end-to-end toolchain integration: OpenWiki + Gitea + NocoDB + RAGFlow + Wiki.js + MiniMax code all wired together and working in production. Snapshot of the pre-flywheel-sync state — pre-dates the 2026-07-26 HN + Tavily launches and the 2026-07-29 Tavily cluster / 2026-08-08 literature flywheel-sync milestones. - [Open Questions](open-questions.md) - Active, Answered, and Stale unresolved questions about Robin's memory, recurring routines, people, projects, and wiki quality. Source-document TODOs and product questions live on their source pages instead. - [Personal Logistics](personal-logistics.md) - Personal errands, appointments, pickups, travel, household/life-admin deadlines, and other non-work logistics. Work commitments live in /commitments.md. - [Robin's Local Knowledge Base](quickstart.md) - OpenWiki entrypoint and orientation — Robin's personal knowledge base with 5 synthesis themes (organoid equipment, bioprinting, AI agents, local LLM, personal research), navigation map, current connector status, and backlog. -- [OpenWiki 现状 + 操作手册 (2026-07-27)](README-ACTIVATION.md) +- [OpenWiki 现状 + 操作手册 (2026-07-27)](README-ACTIVATION.md) - Activation status + operations manual for Robin's local OpenWiki knowledge base as of 2026-07-27. Documents 4 active connectors (HN + git-repo + Tavily + RAGFlow) and the per-source sync scripts (HN top+best feeds, Tavily web-search with TAVILY_API_KEY, git-repo Obsidian vault at /home/ldw/workspace, RAGFlow full-text retrieval at 10.10.10.254:9980). Captures the on-disk Gitea commit + push pattern. - [Themes](themes.md) - Recurring topics, signals, and trends observed across Robin's sources. Index of theme rows with confidence labels and source citations; details live on the linked source and synthesis pages. # Directories diff --git a/memory-2026-07-16-tools-final.md b/memory-2026-07-16-tools-final.md index 96335af..bc1bfa7 100755 --- a/memory-2026-07-16-tools-final.md +++ b/memory-2026-07-16-tools-final.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "2026-07-16 工具链打通战报" -openwiki_generated: true +description: "After-action report on Robin's 2026-07-16 end-to-end toolchain integration: OpenWiki + Gitea + NocoDB + RAGFlow + Wiki.js + MiniMax code all wired together and working in production. Snapshot of the pre-flywheel-sync state — pre-dates the 2026-07-26 HN + Tavily launches and the 2026-07-29 Tavily cluster / 2026-08-08 literature flywheel-sync milestones." +tags: [toolchain-integration, openwiki, gitea, nocodb, ragflow, wikijs, milimax-code, 2026-07-16] --- # 2026-07-16 工具链打通战报 diff --git a/quickstart.md b/quickstart.md index 1869957..f5bc628 100644 --- a/quickstart.md +++ b/quickstart.md @@ -35,6 +35,9 @@ tags: [quickstart, navigation, openwiki, status] - **Wiki state:** initialized — Hacker News, the local Obsidian vault, and Tavily web search are active and feeding `/sources/hackernews.md`, `/sources/git-repo.md`, `/sources/web-search.md`, and `/themes.md`. All 5 synthesis themes (`/themes/01-organoid-equipment.md`, `/themes/02-bioprinting.md`, `/themes/03-ai-agents.md`, `/themes/04-local-llm.md`, `/themes/05-robin-research.md`) are now generated. - **Connectors:** Hacker News, git-repo, and web search active. The 2026-08-08, 2026-08-10, and 2026-08-12 web-search update attempts were skipped because the connector is not enabled and `TAVILY_API_KEY` is empty; the latest successful Tavily pull remains 2026-08-03 18:08 UTC. Gmail, Slack, Notion, and X are not yet configured — see "Adding sources" below. +**Latest update — git-repo-1 (2026-08-13T18:08Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-08-13T18-08-25-206Z/manifest.json`. **Vault HEAD** unchanged at `297f106d2b137af3480261052ff080cbc48d5b48` (same as the 2026-08-12 fetch) — **0 new vault commits** in the 24-hour window; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity. **1 new untracked file** appeared in the working tree: `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — **first entry in a new `Review/` subfolder** under `04-Literature/Deep-Reads/` (Zhou 2023 computer vision + microfluidics — Robin deep-read in progress, uncommitted). Also new untracked: `__pycache__/literature_deepread_v6.cpython-312.pyc` (Python build noise, ignored). **Wiki HEAD** bumped from `c57ead4` (2026-08-12) to **`1737454ad1b4f06ff9958cc9256c0c611262e44a`** (2026-08-13); **2 new wiki-side commits** — `8ddc6d9` chore: daily update 2026-08-13 (this committed the synthesis edits from the HN-1 2026-08-13 run: MCP Memory using OKF / agent-memory-architecture refresh + 1 new theme row extension on `/themes.md`) + `1737454` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-13). **8 uncommitted wiki-side edits** in working tree (carryover from the HN-1 2026-08-13 synthesis edits that landed between the `1737454` commit and this fetch — `.last-update.json` + `quickstart.md` + `sources/hackernews.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` + `themes.md`; pending the next CLI orchestration commit). Wiki edits this run: (a) `/sources/git-repo.md` — refreshed frontmatter HEAD pointers (vault HEAD → `297f106d` unchanged, wiki HEAD → `1737454`, tags + `2026-08-13`), refreshed Connector / State section to the new `2026-08-13T18-08-25-206Z` raw manifest, updated `## obsidian-vault — working-tree status (2026-08-13)` to flag 0 new vault commits + the 2 new untracked files (Review/ zhou2023 + __pycache__), added the new files to the working-tree status table, refreshed the Summary-of-last-24-hours table with the 2026-08-12T18:08Z → 2026-08-13T18:08Z window data (no vault commits, 1 new untracked Review/ file, 2 new wiki commits), refreshed the Notable-entity section to add a `Review/` subfolder expansion entry (first review-type subfolder in the deep-read tree), refreshed the Synthesis-policy section to note this run is **a daily-cycle follow-up (no net-new external evidence)**; (b) `/themes/05-robin-research.md` — vault snapshot metadata refreshed (fetch timestamp → 2026-08-13T18:08:25Z, working-tree state 19 → 25 untracked files, raw manifest path updated), added a new `Review/` row to the deep-read breakdown table (1 file, `zhou2023_computer_vision_microfluidics.md`, marked as **untracked** — only counts once committed), updated the 30-day research output table with a new "Subfolder expansion (uncommitted)" row + extended the by-vendor table accordingly, ER-diagram entity label updated (deep-reads `~1,204` → `~1,205`), surrounding narrative extended with the "Robin appears to be expanding the folder taxonomy to separate review-type papers from original-research papers; whether this is a one-off subfolder or the start of a recurring folder pattern is a watchlist item for the next git-repo fetch" finding. **No `/themes.md` row change, no commitment row, no open-question row, no personal-logistics item** — the Review/ subfolder expansion is a single-file structural event, not a recurring signal; the next git-repo fetch will tell whether more papers land in this subfolder or it stays a single-entry watchlist. Prior run was **hackernews-1 update (2026-08-13T18:00Z)** — see next paragraph for the MCP Memory using OKF / agent-memory-architecture refresh detail. + +**Latest update — hackernews-1 (2026-08-13T18:00Z).** One source-specific update run for `hackernews-1` (Hacker News — LLM-agent topic set) per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=hackernews` and wrote raw data at `~/.openwiki/connectors/hackernews/raw/2026-08-13T18-00-02-662Z/hackernews-results.json`. 2 feeds (`top` 25 + `best` 7) → **27 unique items** (5 overlap: `49285244` DeepSeek Harness developer preview, `49281916` Codex in ChatGPT desktop app for Linux preview, `49284774` Deutsche Bank yuan clearing, `49286341` Spaghettifying DRAM, `49285982` Gloomberb). 6 search queries (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`) returned **zero hits across all six** — all six Algolia queries returned `nbHits=0`. The "no material HN footprint for the 4 vendor lines" finding continues to hold (this is the third pull since 2026-08-07 to have a fully-zero Algolia lane — the prior 2026-08-08 03:15 + 2026-08-08 18:00 pulls were the previous two; the 2026-08-10 + 2026-08-12 pulls had Algolia hits that were all string-collision noise); Tavily (web-search) remains the productive lane for vendor news. **One directly-relevant adjacent** in the 27 unique top+best items — **`49286073` MCP Memory – Fast Agent Memory Using Google's OKF and SQLite FTS5** (46 pts, 22 cmts, Show HN, github.com/fellowgeek/mcp-memory) — the **first HN item since the 2026-07-16 `langchain-ai/openwiki` brand signal to explicitly name Google's OKF frontmatter** (the same schema OpenWiki uses at `/index.md` frontmatter `okf_version: "0.1"` and per concept page). Refreshes `agent-memory-architecture` row on `/themes.md` Last seen → 2026-08-13 (Evidence count → 16+, plus a new MCP Memory / OKF anchor in the row description and Evidence cell). Six flag-for-traceability items stay adjacent-not-promoted under the existing scope discipline ("open-weight AI never earns a `themes.md` row" + workflow-tooling priority LOW): **`49285244` DeepSeek Harness developer preview** (422 pts top+best, 197 cmts — 4th DeepSeek-vs-MiniMax observation in 10 days, after DeepSeek V4 Flash 0731 + Tavily benchlm.ai + DeepSeek V4 Pro 0813; open-weight agent runtime, off-scope); **`49281916` Codex in ChatGPT desktop app for Linux** (394 pts top+best, 269 cmts — Codex in ChatGPT Linux desktop app preview; Codex is on Robin's stack but the established scope rule keeps Codex surface changes adjacent-not-promoted); **`49289112` Gemini 3.7 Flash** (134 pts top, 84 cmts — off-scope); **`49285327` Choosing an AI model: one prompt, 11 models, different results** (115 pts top, 56 cmts — Netlify comparison, off-scope); **`49288889` Mistral OCR 4.1** (40 pts top, 6 cmts — off-scope); **`49283063` Launch HN: Bullet (YC S26) – A Faster Coding Agent** (17 pts top, 19 cmts — YC S26 launch, off-scope). **Key call**: MCP Memory using OKF (`49286073`) is the first HN-side corroboration of the OKF+memory schema that OpenWiki has been using since at least 2026-07-16. The 46-pt engagement is moderate (above the 1-2-pt adjacent items in the 2026-08-03 sweep, below the 100+ pt threshold for high-engagement vendor releases) — but the **direct OKF reference + MCP-server delivery channel + Show HN surfacing** makes it a stronger trigger for `agent-memory-architecture` Last-seen refresh than the prior 2-pt `49156055` verginglabs Markdown-wiki post (2026-08-03) or the 1-pt `49159148` governed/approval-gated-memory post (2026-08-03). No new theme row, no new commitment row, no new open-question row, no personal-logistics item. Wiki edits this run: (a) `/sources/hackernews.md` — added new "Latest update — 2026-08-13 18:00 UTC" section ahead of the 2026-08-12 entry; demoted 2026-08-12 from "Latest" to a regular "Update" section; updated Connector section with the new raw dump path (`2026-08-13T18-00-02-662Z/hackernews-results.json`) and the new latest-fetch timestamp (`2026-08-13T18:00:30Z`); added an "agent-memory-architecture (refreshed this run)" callout section for `49286073`; added a "Flag-for-traceability: DeepSeek Harness, Codex on Linux desktop, Gemini 3.7 Flash, Mistral OCR" callout section; updated `tags` to include `2026-08-13`; (b) `/themes.md` — refreshed `agent-memory-architecture` row: Last seen → 2026-08-13, Evidence count → 16+, row description extended with the MCP Memory / OKF evidence + Evidence cell gained a new HN anchor; all other theme rows unchanged; (c) `/quickstart.md` — added this "Latest update — hackernews-1 (2026-08-13T18:00Z)" paragraph ahead of the 2026-08-12 paragraph; updated the Backlog HN section's last-refreshed date from 2026-08-12 to 2026-08-13. Prior run was **web-search-1 attempted 2026-08-12 skipped** (third consecutive skip due to runtime registry not enabled + `TAVILY_API_KEY` empty); the latest successful Tavily pull remains 2026-08-03 18:08 UTC, and no new CelVivo / 3Brain / Cellink findings were synthesized from this skip. Prior successful run was **git-repo-1 update (2026-08-12T18:08Z)** — see second-paragraph detail in the prior-run history below. **Latest update — git-repo-1 (2026-08-12T18:08Z).** One source-specific update run for `git-repo-1` (Obsidian vault + OpenWiki wiki) per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)". Fresh connector ingest ran via `openwiki_ingest_connector connectorId=git-repo` and wrote manifest at `~/.openwiki/connectors/git-repo/raw/2026-08-12T18-08-49-138Z/manifest.json`. **Vault HEAD** bumped from `d97b39ed` (2026-08-10) to **`297f106d2b137af3480261052ff080cbc48d5b48`** (2026-08-12T10:24 +0800); 4 new commits landed in the 24-hour window — all on the **same single Liang 2026 Sci Rep liver organoid paper** (`04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md`), walked through Robin's standard 3-stage LDR cycle: (a) **`e542c977`** adds the file (186 lines; Liang Y et al. Sci Rep DOI 10.1038/s41598-026-42990-2, PMID 41857098, Wiki.js Id=1716, NocoDB Id=770; 3 轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程稳定成熟 + TGFβ 激活体外纤维化模型); (b) **`8699a154`** rewrites to page 946 9 项 SOP 重写版 (105+/122- lines; 6 核心发现 三段式 tables + 7 SeaFile Fig + 4-star "与我们的产品" table + 4-paper 参考文献 + 转发语); (c) **`aacba7aa`** + **`297f106d`** are the page 934 修齐 micro-revisions (frontmatter title 改中文 / H1 去括号 / 元数据用 bold 单行 / 📄PDF 文件名). **This run brings net-new external evidence into the vault** — Liang 2026 is the first paper whose `related:` field already names `[[MOC-类器官与3D培养]]` on the day of publication (the prior 2026-08-10 first-MOC framing was only prospective). **Wiki HEAD** bumped from `2bc03f3` (2026-08-09) to **`c57ead4bf115dbca5101720db63a7730476d6894`** (2026-08-12T02:30 +0800); 2 new commits on `main` — `431ee6a` chore: daily update 2026-08-12 + `c57ead4` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-12). **10 uncommitted wiki-side edits** in working tree (carryover from the prior HN + web-search synthesis runs this same 24-hour window — `.last-update.json` + `quickstart.md` + `sources/hackernews.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md`; pending the next CLI orchestration commit). Wiki edits this run: (a) `/sources/git-repo.md` — refreshed frontmatter HEAD pointers (vault HEAD → `297f106d`, wiki HEAD → `c57ead4`, tags + `2026-08-12`), refreshed Connector / State section to the new `2026-08-12T18-08-49-138Z` raw manifest, updated `## obsidian-vault — working-tree status (2026-08-12)` HEAD + Ahead-of-origin (12 → 13 commits) + added a Liang 2026 row to the working-tree status table (the file moved from untracked → committed via `e542c977`), refreshed the Recent commits table with the 4 new commits on top of the prior 2026-08-10 cluster, refreshed `## openwiki-wiki — working-tree status (2026-08-12)` HEAD + the uncommitted-10-files enumeration for this window's synthesis-layer carryover, added a new **Liang 2026 liver organoid fibrosis platform (2026-08-12)** Notable-entity entry (the paper's 4-star ClinoStar + ClinoReactor + PhaseHolographic + 3Brain HD-MEA table; MOC linkage evidence; customer-entry scenarios), refreshed the Synthesis-policy section with this run's wiki edits summary + 2 process signals worth watching; (b) `/themes/05-robin-research.md` — vault HEAD `d97b39ed` → `297f106d`, "Latest cluster (2026-08-10)" → "Latest cluster (2026-08-12)" with Liang 2026 cluster summary, ER-diagram entity label updated (vault HEAD + deep-reads `~1,202` → `~1,204`), 30-day research output table extended with a new top-row entry for the Liang 2026 cluster, by-vendor table updated to flag CelVivo `Most recent` → `2026-08-12 (Liang 2026 — ClinoStar rating 5 + ClinoReactor rating 5)` and CelVivo additions row extended to include Liang 2026, total deep-read count `1,202` → `1,203` and the `Liver/` subfolder count `6` → `7`, surrounding paragraph extended with the "Liang 2026 first paper with active MOC `related:` back-link on publication day" finding; (c) `/themes/01-organoid-equipment.md` — added Liang 2026 to the CelVivo evidence anchors (ClinoStar rating 4 + ClinoReactor rating 4 + PhaseHolographic rating 3 + 3Brain HD-MEA rating 3 for 肝-神经互作延伸), extended "What to read next" with the Liang 2026 vault-path row; (d) `/commitments.md` — added `liang-2026-celvivo-clinostar-positioning` (Owner: me, fold Liang 2026 长程成熟 + 体外纤维化模型 story into CelVivo ClinoStar / ClinoReactor sales narrative; parallel to existing `miao-2025-celvivo-clinostar-positioning`), tags updated. **No `/themes.md` row change** — the Liang 2026 evidence is a single-paper flywheel-sync output, not a recurring signal; it routes into the existing `class-organoid-3d-bioprinting` evidence without needing a new theme row. **No `/open-questions.md` row, no `/personal-logistics.md` item** — the Liang 2026 paper is fully published and the synthesis is direct; no ambiguity that requires a memory-graph open question. Prior successful run was **hackernews-1 update (2026-08-12T18:00Z)** — see the next paragraph's "Prior run was" detail. **Latest update — web-search-1 attempted 2026-08-12 skipped.** One source-specific update run for `web-search-1` (Web Search / Tavily) per the source-specific instruction "Track CelVivo / 3Brain / Cellink / organoid news from web (NOTE: needs TAVILY_API_KEY, currently empty)". The deterministic pull was **skipped**: `web-search-1` is not enabled in the runtime registry and `TAVILY_API_KEY` is empty, so no Tavily request was made and no raw data files were written. This is the third consecutive skip on the same code path (after 2026-08-08 + 2026-08-10); the latest successful Tavily pull remains 2026-08-03 18:08 UTC. No new CelVivo / 3Brain / Cellink / organoid findings were available for synthesis; no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md` from this source attempt. Discord between on-disk `~/.openwiki/connectors/web-search/config.json` (which shows `enabled: true` + 6 Chinese queries) and the runtime registry (still reports the connector as disabled) is the same operational issue noted on the 2026-08-08 and 2026-08-10 runs — recorded for traceability only, not a wiki-synthesis concern. Wiki edits this run: (a) `/sources/web-search.md` — added a "2026-08-12 attempted update — skipped" section ahead of the 2026-08-10 entry, following the established 5-field structure (Status / Authentication / Coverage / Synthesis / Operational note); updated the header line to mention the third skip; added `2026-08-12` to the `tags` list; (b) `/quickstart.md` — added this "Latest update — web-search-1 attempted 2026-08-12 skipped" paragraph ahead of the existing "Last update" paragraph; updated the Web Search connector row in "Current status" and "Adding sources" to reflect the 3-entry skip streak; updated the Backlog web-search entry likewise. **No new theme row, no commitment row, no open-question row, no personal-logistics item** — the synthesis layer is unchanged because the connector produced no new evidence. @@ -68,9 +71,9 @@ Deferred until Robin configures connectors or asks for specific documentation: - **Slack evidence index** — `/sources/slack.md` (no Slack connector configured yet) - **Notion evidence index** — `/sources/notion.md` (no Notion MCP configured yet) - **X / Twitter evidence index** — `/sources/x.md` (no X connector configured yet) -- **Hacker News evidence index** — `/sources/hackernews.md` (active; last refreshed 2026-08-12 18:00 UTC — source-specific LLM-agent topic set (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`); first pull under the new query set to produce a confirmed organoid hit — **`49266068` "AI Is Dead. Organoids Are Alive"** (5 pts, Wired, by `Logans_Run`) — refreshing Last seen on the `/themes.md` `class-organoid-3d-bioprinting` row → 2026-08-12; zero vendor-anchored life-science items (`CelVivo`/`3Brain`/`Cellink` hits are string-collision noise); zero positive `openwiki` brand hits (the single `openwiki` query hit is a string collision on Qwen 3.8-27B openweight title, not the `langchain-ai/openwiki` brand signal); six flag-for-traceability items surfaced this run: **DeepSeek V4 Pro 0813** (274 pts top+best, OpenRouter — third observation in 8 days on the DeepSeek V4 → MiniMax-M3/M3-H3 competitive-benchmarks lane, recurrence trigger met per the "third corroborating item" criterion from the 2026-08-10 Muse Glimmer entry but no row description extension added this run), **WorldClaw Agentic 3D** (265 pts best, Tencent Hunyuan3D — open-world 3D-scene generation, not 3D bioprinting), **llama.cpp** (333 pts best, llama.app — strongest adjacents to `/themes/04-local-llm.md` canonical backend for Ollama / LM Studio but third-party domain rather than upstream release; open-weight AI off-scope), **Qwen3.8-2.4T-A95B** (200 pts top, open-weight AI), **"My Agent Setup"** (73 pts top — adjacent agent tooling), **"Hax" coding agent in C** (39 pts top — adjacent agent tooling) — see HN source page) +- **Hacker News evidence index** — `/sources/hackernews.md` (active; last refreshed 2026-08-13 18:00 UTC — source-specific LLM-agent topic set (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`); **third pull since 2026-08-07 to have a fully-zero Algolia lane** (after 2026-08-08 03:15 + 2026-08-08 18:00 — the 2026-08-10 and 2026-08-12 pulls had Algolia hits that were all string-collision noise) — vendor-anchored footprint remains null on the HN lane and Tavily (web-search) remains the productive lane; **one directly-relevant adjacent surfaced this pull: `49286073` MCP Memory using Google's OKF** (46 pts, 22 cmts, Show HN, github.com/fellowgeek/mcp-memory — first HN item since the 2026-07-16 `langchain-ai/openwiki` brand signal to explicitly name the OKF frontmatter that OpenWiki uses) — refreshing Last seen on the `/themes.md` `agent-memory-architecture` row → 2026-08-13 (Evidence count → 16+, plus a new MCP Memory / OKF anchor in the row description and Evidence cell); six flag-for-traceability items surfaced this run (all adjacent-not-promoted under existing scope discipline): **DeepSeek Harness developer preview** (422 pts top+best, 197 cmts — 4th DeepSeek-vs-MiniMax observation in 10 days, open-weight agent runtime, off-scope), **Codex in ChatGPT desktop app for Linux** (394 pts top+best, 269 cmts — Codex is on Robin's stack but the established scope rule keeps Codex surface changes adjacent-not-promoted), **Gemini 3.7 Flash** (134 pts top, off-scope), **Choosing an AI model: one prompt, 11 models** (115 pts top, off-scope), **Mistral OCR 4.1** (40 pts top, off-scope), **Launch HN: Bullet (YC S26)** (17 pts top, off-scope) — see HN source page) - **Web search evidence index** — `/sources/web-search.md` (active; last successful pull 2026-08-03 18:08 UTC — first pull after the 3-day outage streak; CELLINK × Volumetric new Lumen X + 3Brain Utrecht Summer School + CelVivo ClinoStar 2 / Thailand Lab 2026 surfaced, see source page; 2026-08-08, 2026-08-10, and 2026-08-12 update attempts skipped — connector not enabled in runtime registry, `TAVILY_API_KEY` missing; disk config shows `enabled: true` + 6 Chinese queries but the runtime registry disagrees — operational concern, not a wiki-synthesis concern) -- **Git repo evidence index** — `/sources/git-repo.md` (active; last refreshed 2026-08-12 18:08 UTC — covers Robin's Obsidian vault (HEAD `297f106d` 2026-08-12) + OpenWiki wiki (HEAD `c57ead4` 2026-08-12); 13 commits since 2026-08-03 fetch including the **2026-08-12 Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3 轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型; Wiki.js Id=1716, NocoDB Id=770); 19 untracked files including 8 new `02-Clients/Agents/区域-2026-0807.md` distributors-rebuild + `_known_associations.md` association index; wiki-side carries 10 uncommitted synthesis-layer edits from the prior HN + web-search runs this same 24-hour window) +- **Git repo evidence index** — `/sources/git-repo.md` (active; last refreshed 2026-08-13 18:08 UTC — covers Robin's Obsidian vault (HEAD `297f106d` 2026-08-12, **unchanged this fetch** — 0 new vault commits in the 24-hour window) + OpenWiki wiki (HEAD `1737454` 2026-08-13, 2 new wiki commits since 2026-08-12: `8ddc6d9` daily update 2026-08-13 + `1737454` sources-sync 2026-08-13); 13 commits since 2026-08-03 fetch including the **2026-08-12 Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3 轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型; Wiki.js Id=1716, NocoDB Id=770); **25 untracked files** including 8 new `02-Clients/Agents/区域-2026-0807.md` distributors-rebuild + `_known_associations.md` association index + **the first entry in the new `Review/` subfolder** (`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — Zhou 2023 computer vision + microfluidics, Robin deep-read in progress, uncommitted) + `__pycache__/...pyc` Python build noise; wiki-side carries 8 uncommitted synthesis-layer edits from the prior HN-1 2026-08-13 run) - **Project / people / company pages** — only created when durable entities emerge from ingested data These are intentionally blank until there is real evidence to put in them. Populating them with placeholders would dilute the synthesis layer.. \ No newline at end of file diff --git a/sources/2026-07-27-4-27-sop-vs-implementation.md b/sources/2026-07-27-4-27-sop-vs-implementation.md index 31b08a1..3b3b486 100644 --- a/sources/2026-07-27-4-27-sop-vs-implementation.md +++ b/sources/2026-07-27-4-27-sop-vs-implementation.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "4-27 SOP 实战 vs 实现差异 (2026-07-27 Tasevska 2025 重做教训)" -openwiki_generated: true +description: "Lessons-learned capture from Robin's 2026-07-27 Tasevska 2025 EJPS deep-read redo — 9-step comparison table of 4-27 SOP范本 vs 7-27 凭印象实操 (Tasevska + Raji 2 篇) vs 4-27 SOP 走通 (Tasevska 重做); detailed PyMuPDF 嵌入图过滤 rules, Ollama 视觉 fallback chain, NocoDB v1 vs v2 protocol, and the 9-step mandatory format. Applies to every literature-deep-read invocation. Companion to `/sources/ldr-report-template.md`." +tags: [literature-deep-read, sop-vs-implementation, lessons-learned, pymupdf, ollama, nocodb, 2026-08-13] --- # 4-27 SOP 实战 vs 实现差异 (2026-07-27 Tasevska 2025 重做教训) diff --git a/sources/OpenWiki速查手册.md b/sources/OpenWiki速查手册.md index 4c34af8..2d1c0e8 100755 --- a/sources/OpenWiki速查手册.md +++ b/sources/OpenWiki速查手册.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)" -openwiki_generated: true +description: "Compact OpenWiki cheat-sheet that condenses the 2026-07-27 6-conversation walkthrough into a single ready-to-share document. Designed for one-shot delivery to any agent / colleague / customer / manager who asks 'what is OpenWiki?' — covers the core concept, structure, sync model, and 4 active connectors in one page." +tags: [openwiki, cheat-sheet, reference, onboarding, 2026-07-27] --- # OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用) diff --git a/sources/feishu-mail.md b/sources/feishu-mail.md index 37bffe1..7f727d3 100644 --- a/sources/feishu-mail.md +++ b/sources/feishu-mail.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "飞书邮箱 (Robin customer mailbox)" -openwiki_generated: true +description: "Planned cross-agent mailbox sync target for Robin's Feishu (飞书) mailbox (imap.feishu.cn:993 / imap.larksuite.com:993) — would let MiniMax code / Hermes recall 'what did Robin last discuss with customer X' from email metadata + summaries. Not yet provisioned — IMAP credentials + update script + crontab still pending Robin setup; this page documents the planned configuration and the sync policy that will be applied once provisioned." +tags: [feishu-mail, evidence-index, source, mailbox, planned, 2026-08-13] --- # 飞书邮箱 (Robin customer mailbox) diff --git a/sources/git-repo.md b/sources/git-repo.md index ddaca02..ebc1663 100644 --- a/sources/git-repo.md +++ b/sources/git-repo.md @@ -1,9 +1,10 @@ --- type: "Reference" title: "Git repo — evidence index (Obsidian vault, Robin)" -description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD d97b39ed, 2026-08-10) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 2bc03f3, 2026-08-09). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here." +description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 1737454, 2026-08-13). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here." resource: "~/.openwiki/connectors/git-repo/config.json" -tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-10] +tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-13] +timestamp: 2026-08-13T18:08:25Z --- # Git repo — evidence index (Obsidian vault + OpenWiki wiki) @@ -22,36 +23,39 @@ help locate things in the vault, not summarize their content. - **Configured repos:** - `obsidian-vault` → `/home/ldw/workspace` (Robin Obsidian vault, on `main`, HEAD `297f106d2b137af3480261052ff080cbc48d5b48` as of - 2026-08-12). + 2026-08-12 — unchanged this fetch). - `openwiki-wiki` → `/home/ldw/.openwiki/wiki` (the OpenWiki knowledge - base itself, on `main`, HEAD `c57ead4bf115dbca5101720db63a7730476d6894` - as of 2026-08-12). + base itself, on `main`, HEAD `1737454ad1b4f06ff9958cc9256c0c611262e44a` + as of 2026-08-13). - **Auth:** local paths only — no remote, no credentials. -- **Latest fetch:** `2026-08-12T18:08:49Z` (raw manifest - `~/.openwiki/connectors/git-repo/raw/2026-08-12T18-08-49-138Z/manifest.json`). +- **Latest fetch:** `2026-08-13T18:08:25Z` (raw manifest + `~/.openwiki/connectors/git-repo/raw/2026-08-13T18-08-25-206Z/manifest.json`). - **Source config:** `~/.openwiki/connectors/git-repo/config.json` - **State:** `~/.openwiki/connectors/git-repo/state.json` records - `latestIds` per repo; the 2026-08-12 fetch bumped `obsidian-vault` - from `d97b39ed` (2026-08-10) to `297f106d` (2026-08-12, 4 new commits - on the same Liang 2026 paper) and bumped `openwiki-wiki` from - `2bc03f3` (2026-08-09) to `c57ead4` (2026-08-12, 2 new commits: - `431ee6a` daily update 2026-08-12 + `c57ead4` sources-sync 2026-08-12). + `latestIds` per repo; the 2026-08-13 fetch observed vault HEAD + unchanged at `297f106d` (no new vault commits in the 24-hour window — + the 2026-08-12 Liang 2026 cluster of 4 commits is still the most + recent vault activity) and bumped `openwiki-wiki` from `c57ead4` + (2026-08-12) to `1737454` (2026-08-13, 2 new commits: `8ddc6d9` + daily update 2026-08-13 + `1737454` sources-sync 2026-08-13). -## obsidian-vault — working-tree status (2026-08-12) +## obsidian-vault — working-tree status (2026-08-13) - **Branch:** `main` -- **HEAD:** `297f106d2b137af3480261052ff080cbc48d5b48` (vault HEAD after - the **Liang 2026 liver organoid fibrosis platform cluster** on - 2026-08-12) -- **Ahead of origin/main:** 13 commits new since 2026-08-03 fetch (the - 2026-08-10 cluster of 12 was extended by the 2026-08-12 Liang 2026 - cluster of 4 commits on the same paper). -- **Dirty:** yes — same 19 untracked file set as the 2026-08-10 fetch - (8 `02-Clients/Agents/*2026-0807.md` distributor baseline files + the - literature-stage files Robin works on between commits + 5 `文悦精读流水线` - yml variants + `dify精读进度-20260805.md` + `rustdesk-selfhosted-2026-08-05.md` - + `literature_deepread_v6.py` etc.); the Liang 2026 file moved from - untracked → committed via `e542c977`. +- **HEAD:** `297f106d2b137af3480261052ff080cbc48d5b48` (vault HEAD + **unchanged** since the 2026-08-12 fetch — 0 new commits in the + 24-hour window). +- **Ahead of origin/main:** 13 commits new since 2026-08-03 fetch (same + as the 2026-08-12 fetch — the 2026-08-12 Liang 2026 cluster of 4 + commits is still the most recent vault activity). +- **Dirty:** yes — the 2026-08-12 untracked file set extended by **2 + new untracked files**: (a) `__pycache__/literature_deepread_v6.cpython-312.pyc` + — Python compiled cache file from running `literature_deepread_v6.py`, + build noise, ignored; (b) **`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`** — + **first entry in a new `Review/` subfolder** under + `04-Literature/Deep-Reads/` (the file is **untracked** — Robin has + not yet committed it). This is structurally meaningful — see the + Notable-entity section below. - **Working-tree status (raw manifest, abbreviated):** | Status | Path | @@ -74,15 +78,21 @@ help locate things in the vault, not summarize their content. | `??` (untracked) | `Miao2025_Cell_v2.md` | | `??` (untracked) | `Miao2025_Cell_vascularized_organoid.md` | | `??` (untracked) | `Microbioreactor_2026_Rosero_FrontBioeng.md` | + | `??` (untracked) | `__pycache__/literature_deepread_v6.cpython-312.pyc` — **NEW** (2026-08-13) Python compiled cache file (build noise from running `literature_deepread_v6.py`, ignored) | | `??` (untracked) | `dify精读进度-20260805.md` | | `??` (untracked) | `literature_deepread_v6.py` | + | `??` (untracked) | `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — **NEW** (2026-08-13) **first entry in the new `Review/` subfolder** (Zhou 2023 computer vision + microfluidics — Robin deep-read in progress, untracked, future-commit candidate) | | `??` (untracked) | `obsidian-vault/rustdesk-selfhosted-2026-08-05.md` | | `??` (untracked) | `retinal_organoid_deep_read_2026-08-07.md` | | `??` (untracked) | `文悦精读流水线.yml` + v2/v3/v4/v5-clean variants | The 8 untracked `*2026-0807.md` files in `02-Clients/Agents/` are the **2026-08-07 distributor baseline refresh** — see the "Distributor - map refresh (2026-08-07)" section below for synthesis. + map refresh (2026-08-07)" section below for synthesis. The 2 NEW + untracked files this fetch are: (a) + **`Review/zhou2023_computer_vision_microfluidics.md`** — first entry + in a new deep-read subfolder (see Notable-entity entry below); + (b) `__pycache__/...pyc` — build noise, ignored. ### Recent commits (latest first) @@ -143,6 +153,15 @@ CelVivo ClinoReactor ⭐⭐⭐⭐ (单组织 3 轨道分通道灌流; TGFβ 时 精确切换) + CelVivo PhaseHolographic 成像 ⭐⭐⭐ + 3Brain HD-MEA ⭐⭐⭐ (肝-神经互作延伸). +**No new vault commits landed in the 2026-08-12T18:08Z → +2026-08-13T18:08Z window** — the vault HEAD is unchanged at +`297f106d`. The 2026-08-12 Liang 2026 cluster remains the most recent +committed vault activity. One new uncommitted file appeared in the +working tree this fetch: +`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` +— the **first entry in a new `Review/` subfolder** (see the +Notable-entity section below). + The **2026-08-10 cluster** is a **frontmatter-hygiene + MOC-discipline sprint** rather than new external evidence: (a) **Phase A batch** (`d97b39ed`) standardized 6 deep-read notes with the structured 6-field @@ -166,37 +185,40 @@ indexed on [`/sources/literature.md`](/sources/literature.md). The `1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran on the same paper. -## openwiki-wiki — working-tree status (2026-08-12) +## openwiki-wiki — working-tree status (2026-08-13) - **Branch:** `main` -- **HEAD:** `c57ead4bf115dbca5101720db63a7730476d6894` (the +- **HEAD:** `1737454ad1b4f06ff9958cc9256c0c611262e44a` (the `chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts - (sources-sync 2026-08-12)` commit recorded in this run's window). -- **Working-tree state:** 10 modified files (uncommitted — pending next + (sources-sync 2026-08-13)` commit recorded in this run's window). +- **Working-tree state:** 8 modified files (uncommitted — pending next CLI orchestration). The dirty file set is the **synthesis-layer edits - from the prior 2 source-specific runs in this same 24-hour window**: - - Hackernews-1 (2026-08-12T18:00Z) — Wired organoid feature refresh on - `/themes.md` `class-organoid-3d-bioprinting` Last seen → 2026-08-12; - new "Latest update — 2026-08-12 18:00 UTC" section on - `/sources/hackernews.md`; updated quickstart / index status; tag bump. - - Web-search-1 (2026-08-12, third skip) — Tavily still disabled, - `TAVILY_API_KEY` empty; new "2026-08-12 attempted update — skipped" - section on `/sources/web-search.md`; updated quickstart status. - - Daily source-sync (2026-08-12) — `/sources/nocodb.md` / - `/sources/ragflow.md` / `/sources/seafile.md` / `/sources/wikijs.md` - each got a 6-line counter increment + `openwiki_generated: true` - placeholder frontmatter inserted. - - Literature (2026-08-12) — `/sources/literature.md` got a single - short Liang 2026 row appended (this row is a working-tree add for - the next sources-sync commit; the full synthesis lives at the - paper's vault path and on `/themes/01-organoid-equipment.md` / - `/themes/05-robin-research.md`). + from this same 24-hour window's prior run**: + - Hackernews-1 (2026-08-13T18:00Z, prior run) — MCP Memory using OKF + + DeepSeek Harness + Codex in ChatGPT Linux desktop refresh on + `/themes.md` `agent-memory-architecture` Last seen → 2026-08-13; + new "Latest update — 2026-08-13 18:00 UTC" section on + `/sources/hackernews.md`; updated quickstart / index status; tag + bump. The HN-1 synthesis edits landed in commit `8ddc6d9` (daily + update 2026-08-13) — but the residual 8 files in the dirty set + carry the in-progress edits from the current git-repo-1 run that + will land in the next CLI orchestration commit. + - Daily source-sync (2026-08-13) — `1737454` source-sync touched + `/sources/nocodb.md` / `/sources/ragflow.md` / `/sources/seafile.md` + / `/sources/wikijs.md` (4 source counters incremented). The other + 4 dirty files (`.last-update.json`, `quickstart.md`, + `sources/hackernews.md`, `themes.md`) carry the synthesis-layer + edits from the prior HN-1 run that landed *after* `1737454` + committed — they were touched during the HN-1 2026-08-13T18:00Z + synthesis pass and are pending the next CLI commit. - **Auth:** local path only — no remote, no credentials. ### Recent commits (latest first) | Date | Hash | Note | | --- | --- | --- | +| 2026-08-13 | `1737454` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-13) | +| 2026-08-13 | `8ddc6d9` | chore: daily update 2026-08-13 (commitment + quickstart + sources/literature + sources/web-search + themes/01-organoid-equipment + themes/05-robin-research from the HN-1 2026-08-13 synthesis pass) | | 2026-08-12 | `c57ead4` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-12) | | 2026-08-12 | `431ee6a` | chore: daily update 2026-08-12 | | 2026-08-11 | `b64ae41` | lit: PMID 41536916 Bioactive Materials AIVOs 综述 (Wiki.js 1711) | @@ -254,9 +276,9 @@ when the synthesis pipeline catches up. | Window (UTC) | Vault | Wiki | | --- | --- | --- | -| 2026-08-11T18:00:00Z → 2026-08-12T18:08:49Z | HEAD `d97b39ed` → `297f106d` (4 new commits, all on Liang 2026 liver organoid fibrosis paper deep-read) | HEAD `2bc03f3` → `c57ead4` (2 new commits; 6 commits since prior fetch also recorded here: daily + sources-sync on 2026-08-11; literature deep-read cycle on PMID 42041571 OVB-organoids + 3 2026-08-11 PMID entries) | -| **Net new external evidence** | **Liang Y et al. (2026) Sci Rep DOI 10.1038/s41598-026-42990-2** — mouse liver organoid 3-轨道 (Hep/Cho/HSC) + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型; Wiki.js Id=1716, NocoDB Id=770 | none — synthesis layer only (HN-1 Wired organoid refresh + web-search-1 third skip) | -| Untracked → committed migrations | `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (was untracked in 2026-08-10 fetch, now committed via `e542c977`) | none — all 10 dirty files (`.last-update.json`, `quickstart.md`, 4 × sources/{hackernews,web-search,literature,nocodb,ragflow,seafile,wikijs}.md, `themes.md`) are uncommitted synthesis edits awaiting the next CLI commit cycle | +| 2026-08-12T18:08:49Z → 2026-08-13T18:08:25Z | HEAD `297f106d` → `297f106d` (**0 new commits**; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity) | HEAD `c57ead4` → `1737454` (2 new commits: `8ddc6d9` daily update 2026-08-13 + `1737454` sources-sync 2026-08-13) | +| **Net new external evidence** | none on the vault side; **1 new untracked file** (`Review/zhou2023_computer_vision_microfluidics.md` — first entry in a new deep-read `Review/` subfolder; uncommitted) + 1 noise file (`__pycache__/...pyc`, ignored) | none — synthesis layer only (HN-1 2026-08-13 MCP Memory using OKF refresh; the HN-1 synthesis edits landed in `8ddc6d9`; this run's edits are pending the next CLI commit) | +| Untracked → committed migrations | none | none — the 8 dirty files (`.last-update.json`, `quickstart.md`, `sources/hackernews.md`, `sources/nocodb.md`, `sources/ragflow.md`, `sources/seafile.md`, `sources/wikijs.md`, `themes.md`) are uncommitted synthesis edits from this run, awaiting the next CLI commit cycle | ## Vault navigation index @@ -308,9 +330,12 @@ Markdown file counts per deep-read subfolder: | `Retinal/` | 1 | | `Microbioreactor/` | 1 (new as of 2026-08-07 — Rosero 2026 Front Bioeng Biotechnol) | | `Cells/` | 1 (new as of 2026-08-08 — Fernandez Vallone 2026 Cells THSDC) | +| `Review/` | 1 (new as of 2026-08-13 — Zhou 2023 computer vision + microfluidics, **untracked**) | -Total ≈ 1,204 deep-read notes (+2 from the 2026-08-07 / 2026-08-08 -cluster: Microbioreactor 2026 + Cells 2026 Fernandez Vallone). CelVivo, +Total ≈ 1,205 deep-read notes (+1 from the 2026-08-13 cluster: +Review/ zhou2023 computer vision + microfluidics, **untracked** — only +counts once committed). The 2026-08-07 / 2026-08-08 cluster (Microbioreactor ++ Cells) remains the most recent committed deep-read additions. CelVivo, 3Brain, Cellink, and the broad `Organoid/` bucket cover Robin's product KB per the wiki goal focus areas (类器官培养与设备, 3D 生物打印). @@ -373,6 +398,7 @@ fields still 待补). ## Notable entities surfaced by the vault (structural hints only) +- **Review/ subfolder — first entry (2026-08-13, uncommitted)** — `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` is the **first file in a new `Review/` subfolder** under `04-Literature/Deep-Reads/`. The file is **untracked** (Robin has not yet committed it) so the synthesis is provisional, but the path naming convention (`zhou2023_computer_vision_microfluidics.md`) matches Robin's standard deep-read naming pattern (`author-year-keyword-keyword.md`). Likely content: Zhou et al. (2023) computer-vision + microfluidics cross-review paper — a **review-type** paper (rather than an original-research paper) that Robin is collecting as part of his broader organoid + microfluidic cross-anchor reading list. **Structural significance**: the `Review/` subfolder is new — none of the existing 19 subfolders (`Organoid/`, `Celvivo/`, `3Brain/`, `Cellink/`, `Organoid-List/`, `Product-Reports/`, `Brain/`, `Brain-Tumor/`, `Cancer/`, `Liver/`, `Other/`, `RegenMed/`, `3Brain MEA/`, `Cardiac/`, `Kidney/`, `Retinal/`, `Microbioreactor/`, `Cells/`) explicitly segregates review-type papers. A `Review/` subfolder signals Robin may be formalizing the review-paper stream separately from the original-research stream. **No synthesis routes** until the file is committed — the deep-read synthesis page + any vendor-mapping should land after Robin commits the file and the standard 8-step LDR pipeline publishes it to Wiki.js / NocoDB / SeaFile. Track on the next git-repo fetch whether (a) the file is committed, (b) the `Review/` subfolder accumulates additional entries, and (c) the standard page-946 9 项 SOP + page-934 修齐 alignment is applied. - **Liang 2026 liver organoid fibrosis platform (2026-08-12)** — `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (170 lines; `[[MOC-类器官与3D培养]]` already names this paper via `related:` back-link). The paper is **the net-new external evidence** this run (git-repo-1 2026-08-12) brought into the vault; see synthesis at `/themes/01-organoid-equipment.md` § CelVivo evidence (added 2026-08-12) and `/commitments.md` `liang-2026-celvivo-clinostar-positioning`. Single-paper LDR cycle: 4 commits (`e542c977` → `8699a154` → `aacba7aa` → `297f106d`) walked Robin's standard 3-stage SOP on the same file (186 lines → 105+/122- page 946 rewrite → page 934 修齐 micro-revisions). The 4-star "与我们的产品" table on the paper lists **CelVivo ClinoStar ⭐⭐⭐⭐** (P1-P10 长程扩增对应旋转培养 30+ 天无剪切; HSC 静止态在模拟微重力下 7+ 天维持) + **CelVivo ClinoReactor ⭐⭐⭐⭐** (单组织 3 轨道分通道灌流; TGFβ 时间程序精确切换) — **parallel CelVivo ClinoStar rating 5 to Miao 2025 v2's ClinoStar rating 5** from the 2026-08-08 flywheel-sync, but for liver organoid (long-term maturation + fibrosis modeling) rather than lung organoid (vascularization). 7 SeaFile Fig (Fig1-7) + 4-paper 参考文献 (Huch 2013 / Huch 2015 / Clevers 2016). Customer-entry: 药企临床前 (抗纤维化药筛) + 临床肝活检中心 (1-2 mg → 3 周药敏) + 学术 PI (2D vs 3D 旋转 efficiency). **MOC linkage**: the paper's `related:` field already names `[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) — confirming the MOC pattern is in active use on real deep-reads. - **CelVivo industrial customers program** — a dedicated subfolder under `05-Documents/Products/Celvivo/Industrial-Customers/` holds `CelVivo_中国工业 @@ -454,43 +480,57 @@ fields still 待补). ## Synthesis policy for this source -- **This run (2026-08-12, git-repo-1 18:08Z):** 4 new vault commits - landed in the 24-hour window — all on the **same single Liang 2026 - Sci Rep liver organoid paper**, walked through Robin's standard - 3-stage LDR cycle (`e542c977` adds the file → `8699a154` page 946 9 - 项 SOP 重写版 → `aacba7aa` + `297f106d` page 934 修齐 micro-revisions). - This is the **net-new external evidence** this run brings into the - vault: **Liang Y et al. (2026) Sci Rep DOI 10.1038/s41598-026-42990-2** - — mouse liver organoid 3-轨道 (Hep-Orgs + Cho-Orgs + HSC) + - DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型 (EMT + Ki67↓ + - stemness↓). Wiki.js Id=1716, NocoDB Id=770, PMID 41857098. Wiki - edits this run: (a) `/sources/git-repo.md` (this page) — refreshed - HEAD pointers, added 4 commits to the recent-commits table, added a - new "Liang 2026 liver organoid fibrosis platform (2026-08-12)" - Notable-entity entry, refreshed synthesis-policy section, updated - openwiki-wiki working-tree status section; (b) `/themes/05-robin-research.md` — vault - HEAD `d97b39ed` → `297f106d`, "Latest cluster (2026-08-10)" → - "Latest cluster (2026-08-12)", added a new top-row entry to the - 30-day research-output table for the Liang 2026 cluster, updated - the by-vendor CelVivo row to include the Liang 2026 ClinoStar - rating-5 entry; (c) `/themes/01-organoid-equipment.md` — added - Liang 2026 to the CelVivo evidence anchors (ClinoStar rating 4 for - P1-P10 长程 + 旋转 30+ 天无剪切; ClinoReactor rating 4 for 单组织 3 - 轨道分通道灌流 + TGFβ 时间程序; PhaseHolographic imaging rating 3; - 3Brain HD-MEA rating 3 for 肝-神经互作延伸); (d) `/commitments.md` - — added `liang-2026-celvivo-clinostar-positioning` (Owner: me, fold - Liang 2026 长程成熟 + 体外纤维化模型 story into CelVivo ClinoStar - sales narrative; companion to existing `miao-2025-celvivo-clinostar-positioning`). - **No `/open-questions.md` row, no `/personal-logistics.md` item** — - the Liang 2026 paper is fully published and the synthesis is direct; - no ambiguity that requires a memory-graph open question. No - `/themes.md` row change (the Liang 2026 evidence is a single-paper - flywheel-sync output, not a recurring signal — it routes into the - existing `class-organoid-3d-bioprinting` and `china-cde-cell-gene-therapy-rules-2026` - vendor theme evidence without needing a new theme row). The - previous run (2026-08-10) was the prior frontmatter-hygiene + - MOC-discipline sprint; the 2026-08-08 run was the substantive - distributor / Liu-2026-roadmap / `_known_associations.md` update. +- **This run (2026-08-13, git-repo-1 18:08Z):** **0 new vault commits** + in the 24-hour window — the vault HEAD is unchanged at `297f106d` + (the 2026-08-12 Liang 2026 4-commit LDR cluster remains the most + recent vault activity). The only vault-side delta is **1 new + untracked file**: `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` + — the **first entry in a new `Review/` subfolder** under + `04-Literature/Deep-Reads/` (see Notable-entity entry above). 1 + noise file (`__pycache__/...pyc`) is ignored. Wiki-side: **2 new + wiki commits** landed (`8ddc6d9` daily update 2026-08-13 + `1737454` + sources-sync 2026-08-13), advancing HEAD from `c57ead4` (2026-08-12) + to `1737454` (2026-08-13). 8 dirty wiki files in the working tree + (`.last-update.json` + `quickstart.md` + 4 × sources/{hackernews, + nocodb, ragflow, seafile, wikijs}.md + `themes.md`) are + synthesis-layer edits from the prior HN-1 2026-08-13 run that + landed after `1737454` committed and are pending the next CLI + orchestration commit. Wiki edits this run: (a) `/sources/git-repo.md` + (this page) — refreshed HEAD pointers (vault HEAD unchanged, + wiki HEAD `c57ead4` → `1737454`), refreshed the untracked-file + enumeration with 2 NEW rows (`__pycache__/...pyc` + the new + `Review/zhou2023_computer_vision_microfluidics.md`), refreshed the + openwiki-wiki working-tree-status section to 2026-08-13, refreshed + the recent-commits table with `8ddc6d9` + `1737454`, refreshed the + Summary of last 24 hours table to reflect 0 vault commits / 2 wiki + commits, added a new "Review/ subfolder — first entry (2026-08-13, + uncommitted)" Notable-entity entry (structural significance of the + new subfolder), refreshed the synthesis-policy section with this + run's delta summary; (b) `/themes/05-robin-research.md` — added the + new `Review/` subfolder row to the `04-Literature/Deep-Reads/` + breakdown table, refreshed vault-snapshot metadata (latest fetch + timestamp + raw-manifest path + working-tree state); (c) + `/quickstart.md` — added the "Latest update — git-repo-1 + (2026-08-13T18:08Z)" paragraph ahead of the current + "Latest update — hackernews-1 (2026-08-13T18:00Z)" paragraph; demoted + the HN-1 paragraph to a prior-run reference; updated the Backlog + git-repo entry to reflect the new untracked `Review/` file. + **No `/commitments.md` row, no `/open-questions.md` row, no + `/personal-logistics.md` item, no `/themes.md` row change** — the + vault delta is a single uncommitted file, not a published artifact, + and the existing 2026-08-12 Liang 2026 commitment / + `class-organoid-3d-bioprinting` theme row already cover the + structural evidence. +- **Previous run (2026-08-12, git-repo-1 18:08Z):** 4 new vault commits + on the **same single Liang 2026 Sci Rep liver organoid paper** walked + through Robin's standard 3-stage LDR cycle (`e542c977` adds file → + `8699a154` page 946 9 项 SOP 重写版 → `aacba7aa` + `297f106d` + page 934 修齐 micro-revisions) — this was the **net-new external + evidence** for that run. Wiki edits at that time are described in + the synthesis-policy paragraph above; the canonical synthesis + continues to live at `/themes/01-organoid-equipment.md`, + `/themes/05-robin-research.md`, and `/commitments.md` + `liang-2026-celvivo-clinostar-positioning`. - The vault is a knowledge base, not a live signal stream; durable per-document synthesis (paper deep reads, sales scripts, customer files) requires reading individual files, which is delegated to the @@ -499,21 +539,26 @@ fields still 待补). theme only when the connector observes a recurring workflow (e.g. weekly literature digest cadence, sales training iteration pattern) across multiple fetches. -- **Process signal worth watching (2026-08-12):** (a) **Liang 2026's - MOC linkage confirms the MOC pattern is in active use** — the new - paper's `related:` field already names +- **Process signal worth watching (2026-08-13):** (a) **New `Review/` + subfolder signal** — Robin added a 20th subfolder under + `04-Literature/Deep-Reads/` dedicated to review-type papers, with + `zhou2023_computer_vision_microfluidics.md` as the first entry. If + the subfolder accumulates ≥3 entries, this signals a formal + review-paper stream is being built separately from the + original-research stream; if it stays at 1 entry, it's a one-off. + (b) **Liang 2026's MOC linkage confirms the MOC pattern is in active + use** — the paper's `related:` field already names `[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) on the - day of publication, not a future-state plan. This is a stronger - signal than the prior "MOC `related:` lists future MOCs" framing - implied. Track on the next git-repo fetch whether more papers - acquire MOC `related:` back-links and whether MOC-3Brain-HD-MEA / - MOC-Cellink-BIO-X land. (b) **Page 934 修齐 micro-revisions now - appear on every new LDR cycle** — `297f106d` is the second paper - (after `381fcbaa` OVB-organoids 2026-08-11) where Robin applied - the H1 去括号 / 元数据 bold / 📄PDF 文件名 alignment. The pattern - appears to be the new standard end-state. (c) **Phase A frontmatter - batch rollout** is still paused (only 6 of ~1,204 deep-reads - received the 6-field frontmatter); no progress this run. + day of publication, not a future-state plan. Track on the next + git-repo fetch whether more papers acquire MOC `related:` back-links + and whether MOC-3Brain-HD-MEA / MOC-Cellink-BIO-X land. (c) **Page + 934 修齐 micro-revisions now appear on every new LDR cycle** — + `297f106d` is the second paper (after `381fcbaa` OVB-organoids + 2026-08-11) where Robin applied the H1 去括号 / 元数据 bold / + 📄PDF 文件名 alignment. The pattern appears to be the new standard + end-state. (d) **Phase A frontmatter batch rollout** is still + paused (only 6 of ~1,204 deep-reads received the 6-field + frontmatter); no progress this run. ## Next update diff --git a/sources/hackernews.md b/sources/hackernews.md index cec4984..8d41e9f 100644 --- a/sources/hackernews.md +++ b/sources/hackernews.md @@ -2,7 +2,7 @@ type: "Reference" title: "Hacker News — evidence index" description: "Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items." -tags: [hackernews, evidence-index, source, 2026-08-12, 2026-08-10] +tags: [hackernews, evidence-index, source, 2026-08-13, 2026-08-12, 2026-08-10] --- # Hacker News — evidence index @@ -15,10 +15,50 @@ Compact evidence trail for the Hacker News connector (`hackernews-1`, Robin-cura - **Backend:** public HN feeds (`top`, `new`) + Algolia HN search queries - **Auth:** none — public feeds - **Window:** last 24 hours -- **Latest fetch:** `2026-08-12T18:00:30Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below) -- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-08-12T18-00-01-956Z/hackernews-results.json` (current — one new low-engagement organoid signal, see 2026-08-12 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-10T18-00-02-327Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-10 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T18-00-01-989Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T03-14-40-856Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 03:15 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-07T12-29-44-173Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-07 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-03T18-00-02-766Z/hackernews-results.json` (earlier — material findings, see 2026-08-03 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-02T18-00-02-278Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-08-01T18-00-02-274Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-31T18-00-02-519Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-30T18-00-02-784Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-29T18-00-02-667Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-28T18-00-02-178Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-27T18-00-02-615Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-16-06-805Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-00-02-441Z/hackernews-results.json` +- **Latest fetch:** `2026-08-13T18:00:30Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-08-12 18:00, 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below) +- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-08-13T18-00-02-662Z/hackernews-results.json` (current — one directly-relevant `agent-memory-architecture` evidence (MCP Memory using OKF), see 2026-08-13 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-12T18-00-01-956Z/hackernews-results.json` (prior — one new low-engagement organoid signal, see 2026-08-12 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-10T18-00-02-327Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-10 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T18-00-01-989Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T03-14-40-856Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 03:15 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-07T12-29-44-173Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-07 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-03T18-00-02-766Z/hackernews-results.json` (earlier — material findings, see 2026-08-03 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-02T18-00-02-278Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-08-01T18-00-02-274Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-31T18-00-02-519Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-30T18-00-02-784Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-29T18-00-02-667Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-28T18-00-02-178Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-27T18-00-02-615Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-16-06-805Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-00-02-441Z/hackernews-results.json` -## Latest update — 2026-08-12 18:00 UTC +## Latest update — 2026-08-13 18:00 UTC + +- **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed returned 25 items, `best` feed returned 7; deduplication gave **27 unique items across both feeds** (5 overlap: `49285244` DeepSeek Harness developer preview, `49281916` Codex in ChatGPT desktop app for Linux preview, `49284774` Deutsche Bank yuan clearing, `49286341` Spaghettifying DRAM, `49285982` Gloomberb). The 6-query lane produced the hit table below; the connector completed normally at `fetchedAt: 2026-08-13T18:00:30.603Z` (24-hour window). +- **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries.** All six Algolia searches (`organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`) returned `nbHits=0` in the 24 h window. A title/URL regex sweep across the 27 unique top+best items also turned up zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items. The "no material HN footprint for the 4 vendor lines" finding continues to hold — this is the third pull since 2026-08-07 to have a fully-zero Algolia lane (after the 2026-08-08 03:15 + 2026-08-08 18:00 pulls); the 2026-08-10 + 2026-08-12 pulls had Algolia hits that were all string-collision noise. The Tavily web-search lane remains the better signal for vendor news. +- **Workflow lane:** **zero positive `openwiki` brand hits; zero `deepagents` hits.** `openwiki` and `deepagents` both returned `nbHits=0` — so the `openwiki-brand` watchlist row on `/themes.md` stays at Last seen 2026-07-16 and the `agent-memory-architecture` adjacency note for "OpenWiki brand signal" stays at Last seen 2026-07-29. The 27 unique top+best items include one **directly relevant** AI-agent item for the `agent-memory-architecture` theme — and six **adjacent, high-engagement AI-agent / inference / model-launch items** that touch Robin's broader agent-stack lane but stay adjacent-not-promoted under the brief's "low-engagement items are watchlist by default; promotion requires recurrence, strong engagement, or corroboration" rule **and** the `/themes.md` scope discipline ("open-weight AI never earns a `themes.md` row" + workflow-tooling priority LOW): + - **49286073** "Show HN: MCP Memory – Fast Agent Memory Using Google's OKF and SQLite FTS5" (46 pts, 22 cmts, top feed, by `fellowgeek`, https://github.com/fellowgeek/mcp-memory). Show HN for a Model Context Protocol (MCP) server that implements agent-memory using Google's **Open Knowledge Format (OKF)** as the frontmatter schema and SQLite FTS5 as the retrieval backend. **This is the first Hacker News item in the post-2026-07-29 sweep that explicitly references Google's OKF frontmatter** — the same OKF schema that OpenWiki uses ([`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Cross-agent memory substrate: OpenWiki", and the `okf_version: "0.1"` bundle-root frontmatter at [`/index.md`](/index.md)). The implementation is small (Show HN surfacing by a single author, `fellowgeek`) and engagement is moderate (46 pts) — under the established "Watchlist promotion requires recurrence, strong engagement, or corroboration" rule, 46-pt engagement sits in the corroborate-but-not-strongly-confirm band. **However** the item matches an existing topic (`agent-memory-architecture`) AND corroborates the OKF frontmatter pattern that OpenWiki has used since at least the 2026-07-16 launch (`langchain-ai/openwiki` HN `49058424`, 96 pts) — so it promotes `agent-memory-architecture` Last seen → 2026-08-13 (not a new theme row, just a Last-seen + Evidence anchor refresh on the existing row). The MCP-server framing also touches the MCP-revision watchlist that originally drove the 2026-07-28 [`hermes-agent-v0-19-quicksilver`](/themes.md) MCP-related Evidence cell. See `### agent-memory-architecture (refreshed this run)` below. **No new `/commitments.md` entry** — the item is a Show HN surfacing rather than a vendor-direct release, and Robin's OpenWiki already uses OKF (per `/index.md` front matter `okf_version: "0.1"`), so the synthesis layer does not need a new follow-up. + - **49285244** "DeepSeek Harness developer preview" (422 pts, 197 cmts, top+best, by `explosion-s`, https://deepseek.com/harness/en/). DeepSeek's developer preview for an "agent harness" — the orchestration layer over DeepSeek models for tool-using workflows. Strong topical fit to the AI-agent-inference lane and to the `MiniMax-m3` competitive-benchmarks strand (after the DeepSeek V4 Flash 0731 + DeepSeek V4 Pro 0813 + Tavily benchlm.ai comparison observations in this week-and-a-half). However, DeepSeek is an open-weight lab and the harness is an open-weight agent runtime, so per scope discipline ("open-weight AI never earns a `themes.md` row" + workflow-tooling priority LOW) the finding stays adjacent-not-promoted. **Third-party ANCHOR**: the 197-comment count exceeds the prior `49274600` DeepSeek V4 Pro 0813 (274 pts but 5 cmts) and `49214008` DeepSeek V4 Flash 0731 (494 pts); DeepSeek-side activity is real but still off-scope for themes.md. **Adjacent-not-promoted** per brief. + - **49281916** "Codex in ChatGPT desktop app for Linux is now in preview" (394 pts, 269 cmts, top+best, by `OXPHOS`, https://community.openai.com/t/codex-in-chatgpt-desktop-app-for-linux-is-now-in-preview/1390027). OpenAI community post announcing the **Codex surface in the ChatGPT Linux desktop app** is now in preview. **Strongest adjacents to Robin's Codex CLI fallback** — Codex is part of Robin's named-stack fallback (per [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Codex CLI (fallback)") and the Linux desktop-app surface is a new Codex delivery channel that overlaps with Robin's Linux-using environment (WSL primary, plus the planned ITX 24h host — see `/commitments.md` `itx-24h-host-build-2026-q3`). However, (a) "Codex in ChatGPT desktop app" is a different surface from the "Codex CLI" fallback Robin currently references (CLI vs desktop-app channel), and (b) the established scope rule on Codex-wrapper/TUI changes keeps them adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself (per the 2026-07-27 / 2026-07-30 / 2026-08-03 / 2026-08-10 / 2026-08-12 traceability entries below). **Adjacent-not-promoted** per the scope rule. Flagged here because the 394-pt + 269-cmt engagement is high enough to surface in any HN digest even if the finding is not promoted. If Robin starts using the Codex-in-ChatGPT desktop app on Linux (instead of Codex CLI as fallback) on a future pull, the existing `Codex CLI (fallback)` section in [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Adjacent workflow signals (HN / Tavily)" or its "Codex CLI adoption question" backlog item could be revisited. + - **49289112** "Gemini 3.7 Flash" (134 pts, 84 cmts, top feed, by `masont`, https://ai.google.dev/gemini-api/docs/models/gemini-3.7-flash). Google's Gemini 3.7 Flash release on the Gemini API. New model release; **not** on Robin's named daily-driver stack (Hermes / MiniMax-M3+H3 / OpenWiki / RAGFlow / NocoDB / SeaFile / Codex CLI). Adjacent to the LLM lane but off-scope per brief. + - **49285327** "Choosing an AI model: one prompt, 11 models, different results" (115 pts, 56 cmts, top feed, by `Philpax`, https://www.netlify.com/blog/one-prompt-11-models-very-different-results/). Netlify blog comparison of 11 LLMs on a single prompt. Strongest adjacents to the competitive-benchmarking lane already captured on the `MiniMax-m3` row (DeepSeek V4 vs MiniMax M3 strand) — but the Netlify blog is a marketing-influenced comparison, not a primary benchmark. Adjacent-not-promoted per scope. If a future Netlify blog benchmarks the 11 models including MiniMax-M3 specifically, that becomes a direct item on the `MiniMax-m3` row. + - **49285718** "I built a 500k-domain search engine for makers in a weekend for $10" (87 pts, 47 cmts, top feed, by `alexmorleyfinch`, https://alexmorleyfinch.github.io/marlin/history/v1/article/the_birth.html). Indie builder essay. Adjacent to the search-infra lane but not on Robin's stack. Off-scope per brief. + - **49286357** "We eliminated 1,400 CVEs in NanoClaw's container images" (53 pts, 37 cmts, top feed, by `jtbarker`, https://www.echo.ai/blog/echo-xnanoclaw-under-the-hood). Echo.ai blog post on container-image CVE remediation. Adjacent to the AI-agent-infra lane (NanoClaw is an AI-customer-facing agent runtime) but **not** on Robin's named stack. Off-scope per brief. + - **49288889** "Mistral OCR 4.1" (40 pts, 6 cmts, top feed, by `masont`, https://docs.mistral.ai/models/ocr-4-1). Mistral OCR 4.1 release. Adjacent to the OCR / document-understanding lane but not on Robin's named stack. Off-scope per brief. + - **49283063** "Launch HN: Bullet (YC S26) – A Faster Coding Agent" (17 pts, 19 cmts, top feed, by `sukeesh`, https://www.codewithbullet.com). YC S26 coding-agent launch. Adjacent to the AI-coding-agent lane but off-scope per the brief (not on Robin's named stack; the established scope rule keeps generic coding-agent launches adjacent-not-promoted per the 2026-07-27 / 2026-07-30 / 2026-08-03 / 2026-08-10 traceability entries). + - **49285770** "Ordinary Abundance" (80 pts, 28 cmts, top feed, by `mtwn`, https://ordinaryabundance.com/) — essay blog, off-scope. + - **49286485** "Kubernetes on Oxide" (91 pts, 30 cmts, top feed, by `mitchellh`, https://oxide.computer/blog/kubernetes-on-oxide) — Oxide blog, off-scope infra. +- **Other feed items not promoted:** 16 additional top/best items, all off-scope per the brief's scope filter — `49276574` "Delta" (645 pts, 237 cmts, best — Zed editor release, off-scope consumer IDE); `49286341` "Spaghettifying DRAM" (285 pts, 83 cmts, top — github drama on a code repo, off-scope); `49285982` "Gloomberb" (279 pts, 145 cmts, top — game, off-scope); `49284774` "Deutsche Bank becomes first foreign yuan clearing bank in Europe" (331 pts, 352 cmts, top — finance, off-scope); `49279928` "Principia Mathematica is modern and insightful" (259 pts, 137 cmts, best — essay, off-scope); `49286662` "I requested a copy of my data from McDonald's loyalty program" (135 pts, 157 cmts, top — privacy essay, off-scope); `49279638` "How art invented humanity" (36 pts, 5 cmts, top — humanities essay, off-scope); `49288296` "GoAccess" (7 pts, top — log analyzer, off-scope); `49279627` "The Indo-European Family Tree" (33 pts, 18 cmts, top — linguistics, off-scope); `49289512` "Choose Boring Technology (2015)" (8 pts, top — retro essay, off-scope); `49289465` "Donkey.bas is 45 Years Old – 131 line of Glory" (9 pts, 2 cmts, top — retro, off-scope); `49284697` "ATG (YC F25) Is Hiring Member of Technical Staff (Data Platform)" (1 pt — YC jobs, off-scope); `49289026` "Tocharian Online" (13 pts, top — linguistics, off-scope); `49288293` "We Have AI at Home Chapter 1: A Box of Scraps" (14 pts, 3 cmts, top — AI hardware essay, off-scope); `49286030` "Time to Move On: Querying Without Nulls and Bags" (40 pts, 10 cmts, top — arxiv database paper, off-scope). Engagement range 1–645 pts across the 16 items; none matches a Robin in-scope vendor / customer / application-domain / named-stack keyword. +- **Synthesis result:** **one theme Last-seen refresh, no commitment row, no open-question row, no personal-logistics item.** The `agent-memory-architecture` row on `/themes.md` refreshes Last seen → 2026-08-13, Evidence count → 16+, plus a new evidence anchor for the `49286073` MCP Memory / Google's OKF Show HN (`/themes.md` row description extended with the new evidence + a new Evidence cell anchor). All six flag-for-traceability items stay adjacent-not-promoted under the existing scope discipline. **Key call**: `49286073` MCP Memory using Google's OKF is the **first corroborating HN item on the OKF-frontmatter-as-agent-memory-schema pattern** since the 2026-07-16 `langchain-ai/openwiki` brand signal and the 2026-07-29 Tavily OKF-cluster pulls — it directly maps to OpenWiki's own OKF usage at `/index.md` and to the `agent-memory-architecture` watchlist that has been accumulating Karpathy LLM Wiki + OKF + MCP since 2026-07-26. The 46-pt engagement is moderate, but the **direct OKF reference + Show HN surfacing + MCP-server delivery channel** makes it a stronger trigger than the 2-pt `49156055` verginglabs Markdown-wiki post (2026-08-03) or the 1-pt `49159148` governed/approval-gated-memory post (2026-08-03) in the prior sweep. The MCP Memory implementation is on the same OKF + FTS5 pattern as a single-author Show HN, so it does not constitute a repeat observation on a high-engagement vendor release — but it does constitute the first HN-side corroboration of the OKF+memory schema that OpenWiki has been using. The `class-organoid-3d-bioprinting` row stays at Last seen 2026-08-12 (refreshed last pull); this run's workflow-lane item surfaces from the feed rather than from the Algolia query lane. + +| Query lane | Queries run | Qualifying results | +| --- | --- | --- | +| Life sciences / vendors | `organoid`, `CelVivo`, `3Brain`, `Cellink` | 0 (all six queries returned `nbHits=0`) | +| AI workflow | `openwiki`, `deepagents` | 0 (both queries returned `nbHits=0`) | + +Raw dump: `~/.openwiki/connectors/hackernews/raw/2026-08-13T18-00-02-662Z/hackernews-results.json`. + +### agent-memory-architecture (refreshed this run) + +- **49286073** — score 46 — top feed — "Show HN: MCP Memory – Fast Agent Memory Using Google's OKF and SQLite FTS5" by `fellowgeek` (https://github.com/fellowgeek/mcp-memory). Show HN for an MCP-server implementation that uses Google's **Open Knowledge Format (OKF)** as the canonical memory schema and SQLite FTS5 as the retrieval backend. Direct topical fit to the existing `agent-memory-architecture` theme (Last seen 2026-08-03, 15+ distinct sources per `/themes.md` row description) — and **the first Hacker News pull since 2026-07-16 to surface an item that explicitly names the OKF frontmatter format OpenWiki uses**. Engagement is 46 pts (moderate, above the 1-2-pt adjacent items in the 2026-08-03 sweep but below the 100+ pts threshold for high-engagement vendor releases) — enough to refresh Last seen on the existing row per the established pattern of "single-source mid-engagement + direct topical match + corroborates the existing pattern" (see the established rule for refreshing Last seen on the 2026-08-03 Hermes Agent v0.20.0 row at 1 pt + corroboration from the GitHub release tag), but not enough to launch a new theme row or commitment row. The MCP-server delivery channel aligns with the 2026-07-28 MCP-protocol revision (a related protocol-layer signal that already feeds the [`hermes-agent-v0-19-quicksilver`](/themes.md) row description). No follow-up commitment added; OpenWiki's own OKF usage at `/index.md` frontmatter (and at the per-concept frontmatter required by the OKF v0.1 schema) is already in place, so this item does not change Robin's workflow or trigger new documentation work. + +### Flag-for-traceability: DeepSeek Harness, Codex on Linux desktop, Gemini 3.7 Flash, Mistral OCR — adjacent, off-scope + +- **49285244** (422 pts top+best, 197 cmts) DeepSeek Harness developer preview — orchestration layer over DeepSeek models for tool-using workflows. Strongest DeepSeek-related signal of the pull (197-cmt engagement exceeds the prior DeepSeek V4 Pro 0813's 5 cmts), but DeepSeek is open-weight and the Harness is an open-weight agent runtime, so per scope discipline the finding stays adjacent-not-promoted. The DeepSeek-vs-MiniMax competitive lane is now 4 observations in 10 days (DeepSeek V4 Flash 0731 + Tavily benchlm.ai + DeepSeek V4 Pro 0813 + DeepSeek Harness developer preview) — if Hermes / MiniMax-side response (e.g. M3.5 release or new Headroom benchmark) on the same competitive pairing surfaces on a future pull, that becomes the trigger for an `MiniMax-m3-row-annex-competitive-benchmarks` description extension. +- **49281916** (394 pts top+best, 269 cmts) Codex in ChatGPT desktop app for Linux — new Codex delivery channel in the ChatGPT Linux desktop app. Codex is on Robin's stack as fallback (per [`/themes/03-ai-agents.md`](/themes/03-ai-agents.md) § "Codex CLI (fallback)") and the Linux desktop-app surface overlaps with Robin's Linux-using environment. However, "Codex in ChatGPT desktop app" is a different surface from "Codex CLI" (CLI vs desktop-app channel), and the established scope rule on Codex-wrapper/TUI changes keeps them adjacent-not-promoted unless there is a direct change to Hermes / MiniMax / OpenWiki / Codex CLI itself. **Adjacent-not-promoted** per scope. +- **49289112** (134 pts top, 84 cmts) Gemini 3.7 Flash — Google Gemini API release; off-scope. +- **49285327** (115 pts top, 56 cmts) Choosing an AI model: one prompt, 11 models, different results — Netlify blog comparison; off-scope. +- **49288889** (40 pts top, 6 cmts) Mistral OCR 4.1 — Mistral model release; off-scope. +- **49283063** (17 pts top, 19 cmts) Launch HN: Bullet (YC S26) – A Faster Coding Agent — YC S26 coding-agent launch; off-scope. +- **49286357** (53 pts top, 37 cmts) NanoClaw container CVE elimination — AI-agent-infra adjacent; off-scope. + +## Update — 2026-08-12 18:00 UTC - **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed returned 25 items, `best` feed returned 10; deduplication gave **30 unique items across both feeds** (5 overlap: `49271994` AI middle class software engineering, `49272832` Tailscale SQLite WAL-Reset bug, `49270953` 2026 Eclipse Webcams, `49273165` license plate warrant, `49274600` DeepSeek V4 Pro 0813). The 6-query lane produced the hit table below; the connector completed normally at `fetchedAt: 2026-08-12T18:00:30.849Z` (24-hour window). - **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries.** `CelVivo` returned `nbHits=0` (no stories indexed in 24h). `3Brain` returned 11 hits — one is a real organoid essay that was also surfaced by `organoid` (`49266068` "AI Is Dead. Organoids Are Alive", 5 pts, Wired — see "class-organoid-3d-bioprinting (refreshed this run)" below); the remaining 10 are string-collision noise on the substring "brain": `49263658` "The brain may be about to have its Ozempic moment" (114 pts, Economist — generic neuroscience essay on GLP-1-style brain drugs, outside Robin's 4 application domains); `49267390` "Dogs can tell when you're happy, sad or frustrated" (22 pts, Washington Post — consumer / veterinary neuroscience); `49272228` "Dog brains represent human facial expressions" (3 pts, Cell/iScience — veterinary); `49270499` "Big Tech Wants to Harvest Your Thoughts" (4 pts, Wired book excerpt — neurotech policy); `49271182` "Why I Play Board Games (and So Should You)" (4 pts, brainbaking.com — string hit on the "brainbaking" blog name); `49268526` "Brain scans show that dogs can distinguish various emotions in human faces" (1 pt, univie.ac.at — veterinary); `49269234` "New AI chip mimics the human brain's capacity for split-second motor control" (1 pt, LiveScience — brain-inspired computing chip, not 3Brain MEA / HD-MEA); `49269176` "My Terminal Workflow for Note-Taking, Data Engineering and Writing (Linux/macOS)" (1 pt, ssp.sh — "brain" tag slug, off-scope); `49273216` "Show HN: Kery – comments on your PR with a video of the feature working" (1 pt, github.com/Kery-HQ/Kery — `Kery-HQ` slug, off-scope). `Cellink` returned 4 hits — all string-collision noise on author-name / body-text fragments: `49273922` "Show HN: OJCP – an open protocol for agent-consumable job data" (8 pts, ojcp.dev — author `fraywing`, no relationship); `49275744` "Trump signs executive order calling for fewer childhood vaccines" (3 pts, CNBC — author `Fellw`, no relationship); `49265119` "Show HN: Supply-Wizard; Start Selling Data with an Easy Vendor Checklist" (3 pts, brickroad.network — string hit on "Checklist" / vendor terminology, no Cellink overlap); `49275608` "Development Mindset for AI Programming" (1 pt, no URL, author `kva`, no relationship). `organoid` returned 7 hits — **one real organoid essay** (`49266068` "AI Is Dead. Organoids Are Alive", 5 pts, Wired, by `Logans_Run`, https://www.wired.com/story/organoids-lab-grown-brains-neural-networks/ — see "class-organoid-3d-bioprinting (refreshed this run)" below) + six string-collision noise hits: `49275420` "Maintaining an organizational knowledge graph with an LLM and event sourcing" (2 pts, blog.arkency.com — "organizational" string); `49275020` "Ask HN: Responsible/trustable background check companies?" (4 pts, no URL — "organization" string); `49271578` "Show HN: Rekall – an Ableton Live project management companion application" (5 pts, rekall.machinelies.eu — author `iamsaitam`, "organization" string); `49270304` "Show HN: BentoDesk – Elegant Windows desktop organizer powered by Rust" (3 pts, github.com/ZRainbow1275/bentodesk — "organizer" string); `49266230` "Self-contained agents that self-organize" (3 pts, antigma.ai — "self-organize" string); `49264601` "Best Agent Gateways for Healthcare Organizations 2026" (1 pt, mintmcp.com — "Organizations" string). A title/URL regex sweep across the 30 unique top+best items also turned up zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items. The "no material HN footprint for the 4 vendor lines" finding still holds; the Tavily web-search lane remains the better signal for vendor news. diff --git a/sources/index.md b/sources/index.md index a797496..1d26d69 100644 --- a/sources/index.md +++ b/sources/index.md @@ -1,28 +1,28 @@ # Files -- [4-27 SOP 实战 vs 实现差异 (2026-07-27 Tasevska 2025 重做教训)](2026-07-27-4-27-sop-vs-implementation.md) +- [4-27 SOP 实战 vs 实现差异 (2026-07-27 Tasevska 2025 重做教训)](2026-07-27-4-27-sop-vs-implementation.md) - Lessons-learned capture from Robin's 2026-07-27 Tasevska 2025 EJPS deep-read redo — 9-step comparison table of 4-27 SOP范本 vs 7-27 凭印象实操 (Tasevska + Raji 2 篇) vs 4-27 SOP 走通 (Tasevska 重做); detailed PyMuPDF 嵌入图过滤 rules, Ollama 视觉 fallback chain, NocoDB v1 vs v2 protocol, and the 9-step mandatory format. Applies to every literature-deep-read invocation. Companion to `/sources/ldr-report-template.md`. - [Agents 代理商档案索引 — 跨 agent CRM 同步](agents.md) - Cross-agent index of the Obsidian vault 02-Clients/Agents/* profiles (which agents Robin is actively working with, mapped by vendor product line). Base identity only — sensitive fields (phone / WeChat / email / end-customer list / opportunity value) live only in the private vault. Updated 2026-08-07 with _known_associations.md product-line → agent → end-customer mapping. - [全国经销商地图 (2026-08-07 时点)](distributors-china-2026.md) - Compact index of Robin's 2026-08-07 China distributor baseline (259 dealers across 7 regions, replacing 261 in the 2026-07-24 baseline) plus the new product-association index _known_associations.md. Surfaces CelVivo ClinoStar → 济南成全 + FemtoBiomed CellShot → 9X Bio → TriArm Therapeutics chain. Routes pricing-sensitive fields to the private Obsidian vault per /sources/agents.md privacy rule. -- [飞书邮箱 (Robin customer mailbox)](feishu-mail.md) -- [Git repo — evidence index (Obsidian vault, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD d97b39ed, 2026-08-10) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 2bc03f3, 2026-08-09). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here. +- [飞书邮箱 (Robin customer mailbox)](feishu-mail.md) - Planned cross-agent mailbox sync target for Robin's Feishu (飞书) mailbox (imap.feishu.cn:993 / imap.larksuite.com:993) — would let MiniMax code / Hermes recall 'what did Robin last discuss with customer X' from email metadata + summaries. Not yet provisioned — IMAP credentials + update script + crontab still pending Robin setup; this page documents the planned configuration and the sync policy that will be applied once provisioned. +- [Git repo — evidence index (Obsidian vault, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 1737454, 2026-08-13). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here. - [Hacker News — evidence index](hackernews.md) - Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items. -- [文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件)](ldr-report-template.md) -- [Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)](literature-cel-bosnjakovic-2025-pah-deepread.md) -- [CelVivo 2026 脑类器官白皮书《Breaking the Bias》精读索引](literature-celvivo-brain-whitepaper-2026.md) +- [文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件)](ldr-report-template.md) - Master template for Robin's literature-deep-read (LDR) pipeline — consolidates 4 literature skills (`literature-deep-read` / `research` / `review` / `curation-for-sales`) into a single 8-rule + 3-trigger + 5-section "真适合浏览" report format. Synthesized from 4-27 SOP范本 + 7-27 实战 lessons (Tasevska / Raji / Bosnjakovic). Triggers "精读吧" / "发 wikijs" / "入库" / "A" / Id/DOI/PMID/PDF signals into 4-step精简 or 8-step完整 flows. PDF全文必传 + PyMuPDF xref去重 + 9项强制 + SeaFile hostname `fb.biokingdom.top` + NocoDB v1 JSON + 3张真图 + `journal-year-topic` 报告路径. +- [Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)](literature-cel-bosnjakovic-2025-pah-deepread.md) - Deep-read synthesis of Bosnjakovic A et al. 2025 bioRxiv preprint (DOI 10.1101/2025.07.10.663939v1, 2025-07-10) — 21-day mature HepG2 3D spheroids with graded non-cytotoxic BaP + BBF (PAH代表物) exposure for metabolomics biomarker discovery. Robin's connection: 3D spheroid protocol maps directly onto CelVivo ClinoStar dynamic culture; supports PAH exposure metabolomics positioning for hepatotoxicity / NAFLD modeling applications. 精读 2026-07-27. +- [CelVivo 2026 脑类器官白皮书《Breaking the Bias》精读索引](literature-celvivo-brain-whitepaper-2026.md) - Deep-read synthesis of CelVivo ApS (Denmark) 2026 whitepaper 'Breaking the Bias: Addressing the challenges facing optimal neural organoid development' (16 pages, translated + 精读 2026-07-28). Synthesizes CelVivo's positioning on neural organoid long-term culture and the clinical-translation path. Direct vendor-channel evidence for the CelVivo ClinoStar / ClinoReactor portfolio on brain organoid applications — companion to academic literature flywheel-sync. - [Liu 2026 — shape-conformal porous frameworks for full coverage of neural organoid electrophysiology (Nat Biomed Eng, Rogers Lab)](literature-liu-2026-nbme-shape-conformal-organoid-deepread.md) - Deep-read synthesis of Liu N et al. (2026) Nature Biomedical Engineering — shape-conformal porous framework + adaptive genetic algorithm + flexible-electronics microlattice for full-surface (>90%) neural organoid electrophysiology at 3000-8000 channels per organoid (vs 200-1000 traditional MEA); weeks-long stable recording; epilepsy/AD disease modeling. - [Miao 2025 — co-development of mesoderm and endoderm enables organotypic vascularization in lung and gut organoids (Cell v2)](literature-miao-2025-cell-vascularization-v2-deepread.md) - Deep-read synthesis of Miao Y et al. (2025) Cell v2 — single 3D EB co-induction of mesoderm+endoderm yields vHLPO with 7% ECs vs traditional 0%; FOXF1 mutation ACDMPV disease modeling; lung + gut organoid vascularization. -- [Raji 2026 (hMOs + 3Brain HD-MEA) — 7-27 增补版 (跟 7-01 矩阵集成)](literature-raji-2026-deepread.md) +- [Raji 2026 (hMOs + 3Brain HD-MEA) — 7-27 增补版 (跟 7-01 矩阵集成)](literature-raji-2026-deepread.md) - Deep-read synthesis of Raji H, Bertoli F, Perez MJ, Lam A, Volpicelli-Daley LA, Deleidi M. 2026 Molecular Psychiatry (Nature 子刊, s41380-026-03667-4, DOI 10.1038/s41380-026-03667-4, IF 11) — human midbrain organoids (hMOs) with WNT modulation, dopaminergic neuron differentiation, bioreactor culture, and 3Brain HD-MEA electrophysiology for Parkinson's disease modeling. 7-01 实战范本 (page 1622) + 7-27 增补版 integrated with 3-paper 3Brain MEA matrix (Raji / Pali / Wei) and 4 product-line complementarity chain (CelVivo ClinoStar + Cellink BIO X + 3Brain HD-MEA + FemtoBiomed CellShot). - [Sharma 2026 — vascularized retinal organoid RGC survival and maturation (Cell Stem Cell)](literature-sharma-2026-cell-stem-cell-vascularized-retinal-organoid-rgc-deepread.md) - Deep-read synthesis of Sharma K et al. (2026) Cell Stem Cell — transiently vascularized human retinal organoids with RGC 18.2% vs ctrl-RO 1.21% at week 18, W31 ON/OFF/ON-OFF light responses, C3 endothelial monolayer integration strategy. -- [3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)](literature-tasevska-2025-deepread.md) +- [3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)](literature-tasevska-2025-deepread.md) - Deep-read synthesis of Tasevska T et al. 2025 European Journal of Pharmaceutical Sciences 206:106998 (DOI 10.1016/j.ejps.2024.106998, 精读 2026-07-27) — first systematic SSE semi-solid extrusion vs DLP digital-light-processing comparison for sustained-release HCTZ (hydrochlorothiazide) tablets, with focus on SSE matching Cellink BIO X extrusion principle. Supports Robin's 3D-printed personalized-dose / sustained-release positioning and SSE extruder cross-sell narrative for Cellink BIO X accounts. - [Literature Deep-Reads — cross-agent deep-read index](literature.md) - Cross-agent index of Robin's literature deep-reads across the 4 vendor product lines (CelVivo / 3Brain / Cellink / Femtobiomed) and adjacent application domains. Backed by the Obsidian vault 04-Literature/Deep-Reads/ and the flywheel-sync pipeline; synthesis pages are linked per paper. -- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md) -- [OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)](OpenWiki%E9%80%9F%E6%9F%A5%E6%89%8B%E5%86%8C.md) -- [RAGFlow 文档采样索引](ragflow-documents.md) -- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md) +- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md) - Auto-synced index of Robin's NocoDB literature and corporate databases (13 literature bases + 2 company bases) used by MiniMax code / Hermes cross-agent queries. Last sync 2026-08-12, total 6614 records. Companion layer to RAGFlow (PDF full-text), Obsidian (deep-reads), and OpenWiki (this synthesis index). +- [OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)](OpenWiki%E9%80%9F%E6%9F%A5%E6%89%8B%E5%86%8C.md) - Compact OpenWiki cheat-sheet that condenses the 2026-07-27 6-conversation walkthrough into a single ready-to-share document. Designed for one-shot delivery to any agent / colleague / customer / manager who asks 'what is OpenWiki?' — covers the core concept, structure, sync model, and 4 active connectors in one page. +- [RAGFlow 文档采样索引](ragflow-documents.md) - Document-level sample index of Robin's RAGFlow instance (http://10.10.10.254:9980) — 18 KBs / 32709 total docs / 401 sample entries (last sync 2026-08-03). Captures the 30-doc-per-request server-side limit + offset bug that forces 12 large KBs to single-page samples. Lets MiniMax code / Hermes see 'what's in each KB' without SQL queries; complements `/sources/ragflow.md` (KB-level health + counts). +- [RAGFlow 全文检索索引 (Robin KB system)](ragflow.md) - Auto-synced health and KB index of Robin's RAGFlow instance (http://10.10.10.254:9980/) used for PDF full-text retrieval across 14 KBs. Last sync 2026-08-12 (landing 200, /api/v1/datasets 401). Companion layer to NocoDB (metadata) and OpenWiki (this synthesis index). Embedding / bge-reranker degraded since 2026-07-17 — NAS-side vector retrieval unavailable; metadata + chunk-level keyword grep still OK. - [Sources](README.md) - Per-connector evidence indexes and ingestion coverage for the local knowledge wiki; durable synthesis lives on canonical pages. -- [RustDesk 自建 hbbs 完整配置笔记 (2026-08-05)](rustdesk-sop.md) -- [CelVivo 销售弹药清单 (2026-07-16 实战索引)](sales-ammunition.md) -- [SeaFile 大文件存储索引](seafile.md) -- [CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照)](vault-mtime-snapshot-2026-07-16.md) +- [RustDesk 自建 hbbs 完整配置笔记 (2026-08-05)](rustdesk-sop.md) - End-to-end deployment note for Robin's self-hosted RustDesk relay server (hbbs + hbbr) — Unraid NAS container (10.10.10.254) + OpenWrt reverse-proxy (10.10.10.252) + Tencent Light Cloud (43.160.207.177) + ITX client (192.168.31.14), with permanent password + key config. Supports remote control of the ITX 24h host (per `/commitments.md` `itx-24h-host-build-2026-q3`) and Robin's travel-laptop remote-access workflow. +- [CelVivo 销售弹药清单 (2026-07-16 实战索引)](sales-ammunition.md) - Sales ammunition index for CelVivo ClinoStar / ClinoReactor — price-book SKUs (ClinoReactor 12-pack, ClinoStar, SP5D-24W, Demo kit), 8-protocol SOP series (ClinoReactor prep / media change / organoid gardening / speed-tuning / alginate / VitroGel), and 5 organ-specific application cases (HepG2, FTC-133, SCLC, TNBC, ClinoStar vs Orbital Shaker). Sources from RAGFlow CelVivo KB + CelVivo commercial KB; manually curated from Robin + Hermes 实战 lessons. Used by any agent answering CelVivo ClinoReactor pricing / demo / customer-pitch queries. +- [SeaFile 大文件存储索引](seafile.md) - Auto-synced index of Robin's SeaFile large-file storage instance (http://10.10.10.254:9898/, public domain https://fb.biokingdom.top) used to host deep-read PDF + figure attachments. Last sync 2026-08-12. Forms the storage layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin). +- [CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照)](vault-mtime-snapshot-2026-07-16.md) - Historical mtime snapshot of Robin's Obsidian vault from 2026-07-16 — captures CelVivo deep-read activity (0 new entries in the 7-day window 2026-07-09 → 2026-07-16; last activity 2026-07-05), 6 entries in the 30-day window, and ClinoReactor keyword hits. Provides a baseline reference for cross-agent vault state because WSL laptop vault is not directly readable from container agents. Pre-dates the 2026-08-07 distributor refresh + 2026-08-12 Liang 2026 / 2026-08-13 Review/ subfolder activity — superseded by `/themes/05-robin-research.md` for current vault state. - [Web Search Evidence](web-search.md) - Compact, source-backed evidence and ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news. -- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md) +- [Wiki.js 索引 — 跨 agent 文档发布层](wikijs.md) - Auto-synced index of Robin's Wiki.js Biokingdom instance (http://10.10.10.254:3000/graphql) used for cross-agent document publishing. Last sync 2026-08-12, GraphQL sample union (5 orderBy) returns 83 unique pages but server-side cap on `pages.list(limit:N)` is ~50; real page count estimated ≥1704 (max page id). Forms the publishing layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin). diff --git a/sources/ldr-report-template.md b/sources/ldr-report-template.md index 540650f..1e2ba73 100644 --- a/sources/ldr-report-template.md +++ b/sources/ldr-report-template.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "文献精读 Master Template (Robin 7-27 实战版, \"真适合浏览\" 1 文件)" -openwiki_generated: true +description: "Master template for Robin's literature-deep-read (LDR) pipeline — consolidates 4 literature skills (`literature-deep-read` / `research` / `review` / `curation-for-sales`) into a single 8-rule + 3-trigger + 5-section \"真适合浏览\" report format. Synthesized from 4-27 SOP范本 + 7-27 实战 lessons (Tasevska / Raji / Bosnjakovic). Triggers \"精读吧\" / \"发 wikijs\" / \"入库\" / \"A\" / Id/DOI/PMID/PDF signals into 4-step精简 or 8-step完整 flows. PDF全文必传 + PyMuPDF xref去重 + 9项强制 + SeaFile hostname `fb.biokingdom.top` + NocoDB v1 JSON + 3张真图 + `journal-year-topic` 报告路径." +tags: [ldr-template, literature-deep-read, sop, reference, 2026-08-13] --- # 文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件) diff --git a/sources/literature-cel-bosnjakovic-2025-pah-deepread.md b/sources/literature-cel-bosnjakovic-2025-pah-deepread.md index 87e2379..99bbe52 100644 --- a/sources/literature-cel-bosnjakovic-2025-pah-deepread.md +++ b/sources/literature-cel-bosnjakovic-2025-pah-deepread.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)" -openwiki_generated: true +description: "Deep-read synthesis of Bosnjakovic A et al. 2025 bioRxiv preprint (DOI 10.1101/2025.07.10.663939v1, 2025-07-10) — 21-day mature HepG2 3D spheroids with graded non-cytotoxic BaP + BBF (PAH代表物) exposure for metabolomics biomarker discovery. Robin's connection: 3D spheroid protocol maps directly onto CelVivo ClinoStar dynamic culture; supports PAH exposure metabolomics positioning for hepatotoxicity / NAFLD modeling applications. 精读 2026-07-27." +tags: [literature-deep-read, celvivo-clinostar, hepG2, PAH, metabolomics, 3d-spheroid, 2026-08-13] --- # Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv) diff --git a/sources/literature-celvivo-brain-whitepaper-2026.md b/sources/literature-celvivo-brain-whitepaper-2026.md index ee64581..182f49e 100644 --- a/sources/literature-celvivo-brain-whitepaper-2026.md +++ b/sources/literature-celvivo-brain-whitepaper-2026.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "CelVivo 2026 脑类器官白皮书《Breaking the Bias》精读索引" -openwiki_generated: true +description: "Deep-read synthesis of CelVivo ApS (Denmark) 2026 whitepaper 'Breaking the Bias: Addressing the challenges facing optimal neural organoid development' (16 pages, translated + 精读 2026-07-28). Synthesizes CelVivo's positioning on neural organoid long-term culture and the clinical-translation path. Direct vendor-channel evidence for the CelVivo ClinoStar / ClinoReactor portfolio on brain organoid applications — companion to academic literature flywheel-sync." +tags: [literature-deep-read, celvivo, brain-organoid, clinostat, long-term-culture, whitepaper, vendor-channel, 2026-08-13] --- # CelVivo 2026 脑类器官白皮书《Breaking the Bias》精读索引 diff --git a/sources/literature-raji-2026-deepread.md b/sources/literature-raji-2026-deepread.md index 8107180..a8a7fc9 100644 --- a/sources/literature-raji-2026-deepread.md +++ b/sources/literature-raji-2026-deepread.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "Raji 2026 (hMOs + 3Brain HD-MEA) — 7-27 增补版 (跟 7-01 矩阵集成)" -openwiki_generated: true +description: "Deep-read synthesis of Raji H, Bertoli F, Perez MJ, Lam A, Volpicelli-Daley LA, Deleidi M. 2026 Molecular Psychiatry (Nature 子刊, s41380-026-03667-4, DOI 10.1038/s41380-026-03667-4, IF 11) — human midbrain organoids (hMOs) with WNT modulation, dopaminergic neuron differentiation, bioreactor culture, and 3Brain HD-MEA electrophysiology for Parkinson's disease modeling. 7-01 实战范本 (page 1622) + 7-27 增补版 integrated with 3-paper 3Brain MEA matrix (Raji / Pali / Wei) and 4 product-line complementarity chain (CelVivo ClinoStar + Cellink BIO X + 3Brain HD-MEA + FemtoBiomed CellShot)." +tags: [literature-deep-read, 3brain-hd-mea, midbrain-organoid, parkinson, dopaminergic-neuron, bioreactor, 2026-08-13] --- # Raji 2026 (hMOs + 3Brain HD-MEA) — 7-27 增补版 (跟 7-01 矩阵集成) diff --git a/sources/literature-tasevska-2025-deepread.md b/sources/literature-tasevska-2025-deepread.md index 98cf5fa..38c7d3a 100644 --- a/sources/literature-tasevska-2025-deepread.md +++ b/sources/literature-tasevska-2025-deepread.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)" -openwiki_generated: true +description: "Deep-read synthesis of Tasevska T et al. 2025 European Journal of Pharmaceutical Sciences 206:106998 (DOI 10.1016/j.ejps.2024.106998, 精读 2026-07-27) — first systematic SSE semi-solid extrusion vs DLP digital-light-processing comparison for sustained-release HCTZ (hydrochlorothiazide) tablets, with focus on SSE matching Cellink BIO X extrusion principle. Supports Robin's 3D-printed personalized-dose / sustained-release positioning and SSE extruder cross-sell narrative for Cellink BIO X accounts." +tags: [literature-deep-read, cellink-bio-x, 3d-printing, HCTZ, sustained-release, SSE, DLP, 2026-08-13] --- # 3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS) diff --git a/sources/nocodb.md b/sources/nocodb.md index a125e81..5f8c43c 100644 --- a/sources/nocodb.md +++ b/sources/nocodb.md @@ -1,3 +1,10 @@ +--- +type: "Reference" +title: "NocoDB 文献库索引 — 跨 agent 数据层" +description: "Auto-synced index of Robin's NocoDB literature and corporate databases (13 literature bases + 2 company bases) used by MiniMax code / Hermes cross-agent queries. Last sync 2026-08-12, total 6614 records. Companion layer to RAGFlow (PDF full-text), Obsidian (deep-reads), and OpenWiki (this synthesis index)." +tags: [nocodb, evidence-index, source, literature, cross-agent-data, 2026-08-13] +--- + # NocoDB 文献库索引 — 跨 agent 数据层 > 数据源: NocoDB 13 个文献库 + 2 个公司库 (实时,每次 OpenWiki cron 跑时更新) diff --git a/sources/ragflow-documents.md b/sources/ragflow-documents.md index bcfcacb..ca1710d 100644 --- a/sources/ragflow-documents.md +++ b/sources/ragflow-documents.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "RAGFlow 文档采样索引" -openwiki_generated: true +description: "Document-level sample index of Robin's RAGFlow instance (http://10.10.10.254:9980) — 18 KBs / 32709 total docs / 401 sample entries (last sync 2026-08-03). Captures the 30-doc-per-request server-side limit + offset bug that forces 12 large KBs to single-page samples. Lets MiniMax code / Hermes see 'what's in each KB' without SQL queries; complements `/sources/ragflow.md` (KB-level health + counts)." +tags: [ragflow, evidence-index, source, kb-documents, sample, 2026-08-13] --- # RAGFlow 文档采样索引 diff --git a/sources/ragflow.md b/sources/ragflow.md index 88b6333..0607d04 100644 --- a/sources/ragflow.md +++ b/sources/ragflow.md @@ -1,3 +1,10 @@ +--- +type: "Reference" +title: "RAGFlow 全文检索索引 (Robin KB system)" +description: "Auto-synced health and KB index of Robin's RAGFlow instance (http://10.10.10.254:9980/) used for PDF full-text retrieval across 14 KBs. Last sync 2026-08-12 (landing 200, /api/v1/datasets 401). Companion layer to NocoDB (metadata) and OpenWiki (this synthesis index). Embedding / bge-reranker degraded since 2026-07-17 — NAS-side vector retrieval unavailable; metadata + chunk-level keyword grep still OK." +tags: [ragflow, evidence-index, source, kb-retrieval, cross-agent-data, 2026-08-13] +--- + # RAGFlow 全文检索索引 (Robin KB system) > 数据源: RAGFlow (http://10.10.10.254:9980/) 14 个 KB 全文检索结果 diff --git a/sources/rustdesk-sop.md b/sources/rustdesk-sop.md index 0a6d0b2..15f24f3 100644 --- a/sources/rustdesk-sop.md +++ b/sources/rustdesk-sop.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "RustDesk 自建 hbbs 完整配置笔记 (2026-08-05)" -openwiki_generated: true +description: "End-to-end deployment note for Robin's self-hosted RustDesk relay server (hbbs + hbbr) — Unraid NAS container (10.10.10.254) + OpenWrt reverse-proxy (10.10.10.252) + Tencent Light Cloud (43.160.207.177) + ITX client (192.168.31.14), with permanent password + key config. Supports remote control of the ITX 24h host (per `/commitments.md` `itx-24h-host-build-2026-q3`) and Robin's travel-laptop remote-access workflow." +tags: [rustdesk, itx-24h-host, remote-access, sop, infra, 2026-08-13] --- # RustDesk 自建 hbbs 完整配置笔记 (2026-08-05) diff --git a/sources/sales-ammunition.md b/sources/sales-ammunition.md index 275f336..4d8938d 100644 --- a/sources/sales-ammunition.md +++ b/sources/sales-ammunition.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "CelVivo 销售弹药清单 (2026-07-16 实战索引)" -openwiki_generated: true +description: "Sales ammunition index for CelVivo ClinoStar / ClinoReactor — price-book SKUs (ClinoReactor 12-pack, ClinoStar, SP5D-24W, Demo kit), 8-protocol SOP series (ClinoReactor prep / media change / organoid gardening / speed-tuning / alginate / VitroGel), and 5 organ-specific application cases (HepG2, FTC-133, SCLC, TNBC, ClinoStar vs Orbital Shaker). Sources from RAGFlow CelVivo KB + CelVivo commercial KB; manually curated from Robin + Hermes 实战 lessons. Used by any agent answering CelVivo ClinoReactor pricing / demo / customer-pitch queries." +tags: [sales-ammunition, celvivo, clinoreactor, clinostar, evidence-index, 2026-08-13] --- # CelVivo 销售弹药清单 (2026-07-16 实战索引) diff --git a/sources/seafile.md b/sources/seafile.md index 90653f2..a9405c9 100644 --- a/sources/seafile.md +++ b/sources/seafile.md @@ -1,3 +1,10 @@ +--- +type: "Reference" +title: "SeaFile 大文件存储索引" +description: "Auto-synced index of Robin's SeaFile large-file storage instance (http://10.10.10.254:9898/, public domain https://fb.biokingdom.top) used to host deep-read PDF + figure attachments. Last sync 2026-08-12. Forms the storage layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin)." +tags: [seafile, evidence-index, source, file-storage, cross-agent-data, 2026-08-13] +--- + # SeaFile 大文件存储索引 > 数据源: SeaFile (http://10.10.10.254:9898/) 共 N 个资料库 diff --git a/sources/vault-mtime-snapshot-2026-07-16.md b/sources/vault-mtime-snapshot-2026-07-16.md index 75c50b4..fc18c50 100644 --- a/sources/vault-mtime-snapshot-2026-07-16.md +++ b/sources/vault-mtime-snapshot-2026-07-16.md @@ -1,7 +1,8 @@ --- type: "Reference" title: "CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照)" -openwiki_generated: true +description: "Historical mtime snapshot of Robin's Obsidian vault from 2026-07-16 — captures CelVivo deep-read activity (0 new entries in the 7-day window 2026-07-09 → 2026-07-16; last activity 2026-07-05), 6 entries in the 30-day window, and ClinoReactor keyword hits. Provides a baseline reference for cross-agent vault state because WSL laptop vault is not directly readable from container agents. Pre-dates the 2026-08-07 distributor refresh + 2026-08-12 Liang 2026 / 2026-08-13 Review/ subfolder activity — superseded by `/themes/05-robin-research.md` for current vault state." +tags: [vault-snapshot, mtime, celvivo, historical-baseline, 2026-08-13] --- # CelVivo + Vault 实时 mtime 快照 (2026-07-16 快照) diff --git a/sources/wikijs.md b/sources/wikijs.md index f5fce7e..53fe599 100644 --- a/sources/wikijs.md +++ b/sources/wikijs.md @@ -1,3 +1,10 @@ +--- +type: "Reference" +title: "Wiki.js 索引 — 跨 agent 文档发布层" +description: "Auto-synced index of Robin's Wiki.js Biokingdom instance (http://10.10.10.254:3000/graphql) used for cross-agent document publishing. Last sync 2026-08-12, GraphQL sample union (5 orderBy) returns 83 unique pages but server-side cap on `pages.list(limit:N)` is ~50; real page count estimated ≥1704 (max page id). Forms the publishing layer of the LDR pipeline (PDF → SeaFile → Wiki.js → OpenWiki → MiniMax code → Robin)." +tags: [wikijs, evidence-index, source, document-publishing, cross-agent-data, 2026-08-13] +--- + # Wiki.js 索引 — 跨 agent 文档发布层 > 数据源: Wiki.js (http://10.10.10.254:3000/graphql) Biokingdom 实例 diff --git a/themes.md b/themes.md index e5cee2c..ffa5acd 100644 --- a/themes.md +++ b/themes.md @@ -19,7 +19,7 @@ Index kept narrow by design: only themes that map to Robin's actual work (life-s | `MiniMax-m3` | MiniMax-M3 (1M context multimodal) HuggingFace model card + Twitter launch; the daily-driver inference provider behind every OpenWiki run and most of Robin's agent work; haimaker.ai July 2026 third-party eval ranks models for Hermes Agent usage; MyClaw.ai 2026-07-29 confirms M3 + M2.7 are the operational models for both OpenClaw and Hermes, with M3 supporting multimodal (image, video, music, speech, web search); pull 11 (2026-08-03) adds **unsloth/MiniMax-M3-GGUF** (HuggingFace 2026-08-01) confirming quantized local-LLM run path + **benchlm.ai "DeepSeek V4 Flash vs MiniMax M3: Benchmarks & Cost"** (2026-08-01) reframing M3 as "1M context window at $0.30…"; this 2026-08-03 HN pull surfaces the **MiniMax-H3 launch cluster** (item `49155629` 167pts top-feed ComfyUI Day-0 support with open weights + native audio + 2K video; item `49150583` 8pts "MiniMax-H3 weights are up" on HuggingFace model card; item `49150861` 2pts "Run MiniMax-H3 Locally with SGLang Diffusion on 2× RTX 5090s or 1× RTX Pro 6000" via LMSYS Twitter) — three distinct primary sources on the same day confirming H3 as the next frontier model release after M3 | 2026-07-16 | 2026-08-03 | source-backed | hackernews, web-search | 8+ | active | [HN: M3 model cluster + H3 launch cluster 2026-08-03](/sources/hackernews.md); [Tavily: Hermes Agent best-models eval](/sources/web-search.md); [Tavily: MyClaw OpenClaw vs MiniMax Agent 2026-07-29](/sources/web-search.md#2026-07-29-1803-pull); [Tavily: unsloth/MiniMax-M3-GGUF + BenchLM M3 vs DeepSeek V4 Flash 2026-08-03](/sources/web-search.md#2026-08-03-1808-pull) | | `hermes-agent-v0-19-quicksilver` | Hermes Agent v0.19 "Quicksilver" release (2026-07-25): first-token delay 4.3s → 0.9s, profile routing, live subagent, delivery ledger, 1Password/Bitwarden integration; relevant to Robin's daily-driver stack; MCP 2026-07-28 revision finalization (not backward-compatible) is a related protocol-layer signal; `configuration.md` (2026-07-26) documents the iteration-budget behavior change (April 2026: removed premature 70%/90% warnings, now single wrap-up at 500/500 with grace call) and `features/api-server.md` (2026-07-27) documents new `/v1/runs/{run_id}/stop` + `/approval` endpoints with MiniMax-M3 as the documented default model; pull 7 (2026-07-30) re-anchors `api-server.md` with a new per-profile `API_SERVER_KEY` breaking-change warning and a runs API for long-form sessions, and adds a third-party Hermes Atlas "State of Hermes Agent — July 2026" report; this 2026-08-03 HN pull surfaces **Hermes Agent v0.20.0** (item `49159200`, NousResearch GitHub releases tag `v2026.8.3`, 1pt on HN day-of — the next major version after v0.19 Quicksilver); pull 11 (2026-08-03) adds a **Hermes Agent 0.19.1 GitHub bug report** (NousResearch issues/77000, 2026-08-02, score 0.790, "gpt-5.6-luna + opencode-go") confirming patch-version activity on the v0.19.x track between the v0.19 Quicksilver release and the v0.20.0 release; Tavily answer text on the Hermes/M3 lane was partially fabricated ("release date of June 1, 2026") and should be ignored — the underlying GitHub issue URL is the credible signal | 2026-07-25 | 2026-08-03 | source-backed | hackernews, web-search | 10 | active | [Tavily: Hermes v0.19 Quicksilver + MCP revision 2026-07-27](/sources/web-search.md); [Tavily: hermes-agent configuration.md + api-server.md + MyClaw 2026-07-29](/sources/web-search.md#2026-07-29-1803-pull); [Tavily: api-server.md API_SERVER_KEY break + Hermes Atlas state report 2026-07-30](/sources/web-search.md#2026-07-30-1804-pull); [Tavily: Hermes Agent 0.19.1 GitHub bug report 2026-08-03](/sources/web-search.md#2026-08-03-1808-pull); [HN: Hermes Agent v0.20.0 release 2026-08-03](/sources/hackernews.md) | | `openwiki-brand` | `langchain-ai/openwiki` (96 pts) — same product family as Robin's OpenWiki; high-engagement on HN | 2026-07-16 | 2026-07-16 | source-backed | hackernews | 1 (+ 2 adjacent wrappers) | watchlist | [HN: openwiki cluster](/sources/hackernews.md#openwiki-brand-signal) | -| `agent-memory-architecture` | Shared agent-memory architecture using Karpathy's LLM Wiki + Google's Open Knowledge Format (OKF) + MCP — let "every Local AI share ONE permanent memory"; this 2026-07-29 Tavily pull adds four more corroborated sources (Hackernoon Moorcheh.ai "Agent Memory Has a Lock-In Problem. Open Formats Are How We Fix It." with diffability / reviewability / auditability framing; Towards Data Science "Usage-Reinforced Decay Engine for AI Agent Memory" using Ebbinghaus forgetting curve; The Register / MinIO AIStor Memory for long-running multi-step workflows; HPCwire Exabase M-1 BEAM benchmark numbers 76.9% / 75.0% / 68.0% at 100K/1M/10M tokens) on top of the prior HN + Tavily sources; the Hackernoon piece is the strongest OpenWiki-aligning source yet; pull 7 (2026-07-30) adds arXiv 2607.24759v1 "A Templated Substrate for Heterogeneous Collaborative" + rohitg00 LLM Wiki v2 (extending Karpathy's LLM Wiki pattern with lessons from building agentmemory) + Pi `@zosmaai/pi-llm-wiki` package + MinIO AIStor Memory (HPCwire 2026-07-29 + SiliconANGLE 2026-07-30); pull 11 (2026-08-03) adds **akitaonrails/ai-memory `docs/research-karpathy-llm-wiki.md`** (GitHub 2026-07-28, score 0.601) — a third-party research write-up of the Karpathy LLM Wiki pattern — bringing the cluster to 15+ distinct sources | 2026-07-26 | 2026-08-03 | source-backed | hackernews, web-search | 15+ | active | [HN: 49059959, 49059889, 49060215](/sources/hackernews.md); [Tavily: LLM Wiki + OKF cluster 2026-07-28](/sources/web-search.md); [Tavily: Moorcheh.ai + TDS + MinIO + Exabase cluster 2026-07-29](/sources/web-search.md#2026-07-29-1803-pull); [Tavily: arXiv 2607.24759v1 + LLM Wiki v2 + Pi pi-llm-wiki + MinIO AIStor 2026-07-30](/sources/web-search.md#2026-07-30-1804-pull); [Tavily: akitaonrails/ai-memory research write-up 2026-08-03](/sources/web-search.md#2026-08-03-1808-pull) | +| `agent-memory-architecture` | Shared agent-memory architecture using Karpathy's LLM Wiki + Google's Open Knowledge Format (OKF) + MCP — let "every Local AI share ONE permanent memory"; this 2026-07-29 Tavily pull adds four more corroborated sources (Hackernoon Moorcheh.ai "Agent Memory Has a Lock-In Problem. Open Formats Are How We Fix It." with diffability / reviewability / auditability framing; Towards Data Science "Usage-Reinforced Decay Engine for AI Agent Memory" using Ebbinghaus forgetting curve; The Register / MinIO AIStor Memory for long-running multi-step workflows; HPCwire Exabase M-1 BEAM benchmark numbers 76.9% / 75.0% / 68.0% at 100K/1M/10M tokens) on top of the prior HN + Tavily sources; the Hackernoon piece is the strongest OpenWiki-aligning source yet; pull 7 (2026-07-30) adds arXiv 2607.24759v1 "A Templated Substrate for Heterogeneous Collaborative" + rohitg00 LLM Wiki v2 (extending Karpathy's LLM Wiki pattern with lessons from building agentmemory) + Pi `@zosmaai/pi-llm-wiki` package + MinIO AIStor Memory (HPCwire 2026-07-29 + SiliconANGLE 2026-07-30); pull 11 (2026-08-03) adds **akitaonrails/ai-memory `docs/research-karpathy-llm-wiki.md`** (GitHub 2026-07-28, score 0.601) — a third-party research write-up of the Karpathy LLM Wiki pattern — bringing the cluster to 15+ distinct sources; **2026-08-13 HN pull** adds item `49286073` "Show HN: MCP Memory – Fast Agent Memory Using Google's OKF and SQLite FTS5" (46 pts, 22 cmts, github.com/fellowgeek/mcp-memory) — **the first HN item since the 2026-07-16 `langchain-ai/openwiki` brand signal to explicitly name Google's OKF frontmatter** (the same schema OpenWiki uses at `/index.md` frontmatter `okf_version: "0.1"` and across every concept page's per-page frontmatter), paired with an MCP-server delivery channel that touches the 2026-07-28 MCP-protocol revision watchlist already feeding [`hermes-agent-v0-19-quicksilver`](/sources/hackernews.md) Evidence cell — direct corroboration of the OKF+memory schema pattern rather than a new theme | 2026-07-26 | 2026-08-13 | source-backed | hackernews, web-search | 16+ | active | [HN: 49059959, 49059889, 49060215](/sources/hackernews.md); [HN: MCP Memory using Google's OKF 2026-08-13](/sources/hackernews.md#agent-memory-architecture-refreshed-this-run); [Tavily: LLM Wiki + OKF cluster 2026-07-28](/sources/web-search.md); [Tavily: Moorcheh.ai + TDS + MinIO + Exabase cluster 2026-07-29](/sources/web-search.md#2026-07-29-1803-pull); [Tavily: arXiv 2607.24759v1 + LLM Wiki v2 + Pi pi-llm-wiki + MinIO AIStor 2026-07-30](/sources/web-search.md#2026-07-30-1804-pull); [Tavily: akitaonrails/ai-memory research write-up 2026-08-03](/sources/web-search.md#2026-08-03-1808-pull) | ## Notes diff --git a/themes/05-robin-research.md b/themes/05-robin-research.md index 6b1eff6..9074742 100644 --- a/themes/05-robin-research.md +++ b/themes/05-robin-research.md @@ -2,7 +2,8 @@ type: "Reference" title: "Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)" description: "Synthesis page for Robin's personal research portfolio — Obsidian vault + literature deep-read pipeline + sales ammunition + China distributor map + active CRM profiles + work-rhythm snapshots. Output routes into vendor themes 01 (organoid-equipment) and 02 (bioprinting)." -tags: [theme, research, vault, deep-read, sales, crm, life-sciences] +tags: [theme, research, vault, deep-read, sales, crm, life-sciences, 2026-08-13] +timestamp: 2026-08-13T18:08:25Z --- # Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM) @@ -22,7 +23,7 @@ This is the synthesis page for **Robin 个人研究项目** — the durable body ```mermaid erDiagram - VAULT["Obsidian vault (297f106d)"] ||--o{ DEEPREADS["Deep-read notes ~1,204"] + VAULT["Obsidian vault (297f106d)"] ||--o{ DEEPREADS["Deep-read notes ~1,205"] VAULT ||--o{ TRAIN["Sales training (CelVivo赋能培训 v1-v9)"] VAULT ||--o{ SALES["Active sales pipeline (惠百生物 PO + 中间商)"] VAULT ||--o{ CRM["Distributor profiles (董慧群 + 待补)"] @@ -49,18 +50,19 @@ The diagram shows Robin's research substrate: a single Obsidian vault with 8 buc ## Knowledge substrate: Obsidian vault -Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08-12T18:08:49Z): +Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08-13T18:08:25Z): | Field | Value | | --- | --- | | Repo path | `/home/ldw/workspace` | | Branch | `main` | -| HEAD | `297f106d2b137af3480261052ff080cbc48d5b48` (2026-08-12) | -| Ahead of origin/main | 13 commits new since 2026-08-03 fetch (Fernandez Vallone 2026 + Microbioreactor 2026 + Liu 2026 v2-v11 + 4 经销商 hook 升级 + Wang 2024 Theranostics + **Phase A metadata batch + 2 sample runs** + **Liang 2026 liver organoid fibrosis platform 4-commit LDR cycle**); plus 19 untracked files in working tree | +| HEAD | `297f106d2b137af3480261052ff080cbc48d5b48` (**unchanged** since 2026-08-12 fetch — 0 new vault commits in the 2026-08-13 24-hour window) | +| Ahead of origin/main | 13 commits new since 2026-08-03 fetch (Fernandez Vallone 2026 + Microbioreactor 2026 + Liu 2026 v2-v11 + 4 经销商 hook 升级 + Wang 2024 Theranostics + **Phase A metadata batch + 2 sample runs** + **Liang 2026 liver organoid fibrosis platform 4-commit LDR cycle**); plus **25 untracked files** in working tree (added 2 since 2026-08-12: `__pycache__/...pyc` build noise + `Review/zhou2023_computer_vision_microfluidics.md` first entry in new `Review/` subfolder) | | Auth | local path only — no remote, no credentials | -| Working-tree state | dirty (1 nested-submodule + 1 untracked dir + 19 untracked files including 8 new `02-Clients/Agents/区域-2026-0807.md`) | -| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-08-12T18-08-49-138Z/manifest.json` | -| **Latest cluster (2026-08-12)** | **Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3-轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型) | +| Working-tree state | dirty (1 nested-submodule + 1 untracked dir + 25 untracked files including 8 new `02-Clients/Agents/区域-2026-0807.md` + the new `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder untracked file) | +| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-08-13T18-08-25-206Z/manifest.json` | +| **Latest cluster (2026-08-12, unchanged this fetch)** | **Liang 2026 Sci Rep liver organoid fibrosis platform 4-commit LDR cycle** (`e542c977` adds file 186 lines → `8699a154` page 946 9 项 SOP 重写版 105+/122- → `aacba7aa` frontmatter title 改中文 1 line → `297f106d` page 934 修齐 5+/4-) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3-轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型) | +| **Latest uncommitted file (2026-08-13)** | `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — **first entry in the new `Review/` subfolder**; review-type papers stream separately from original-research stream | ### Vault navigation index (top-level folders) @@ -105,8 +107,11 @@ Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08 | `Cardiac/` | 2 | cardiac organoid | | `Kidney/` | 2 | kidney organoid | | `Retinal/` | 1 | retinal organoid | +| `Microbioreactor/` | 1 | Rosero 2026 Front Bioeng Biotechnol (added 2026-08-07) | +| `Cells/` | 1 | Fernandez Vallone 2026 Cells THSDC (added 2026-08-08) | +| `Review/` | 1 | Zhou 2023 computer vision + microfluidics (added 2026-08-13, **untracked**) | -Total ≈ 1,203 deep-read notes (the 2026-08-12 Liang 2026 liver organoid fibrosis platform file is the net-new entry since the 2026-08-10 fetch). The 4 vendor subfolders (Celvivo / 3Brain / Cellink / Organoid) cover the canonical product KB per the wiki goal focus areas. +Total ≈ 1,204 deep-read notes on `main` + **1 untracked entry in the new `Review/` subfolder** (`zhou2023_computer_vision_microfluidics.md`, 2026-08-13 — first review-type subfolder; future-commit candidate). The 4 vendor subfolders (Celvivo / 3Brain / Cellink / Organoid) cover the canonical product KB per the wiki goal focus areas. ## Literature deep-read (LDR) pipeline @@ -216,8 +221,9 @@ By vendor (30-day mtime): | Cellink | 2026-07-27 (Tasevska 2025) | +Liu 2026 (microlattice fabrication rating 5 adjacent) | | Adjacent (no vendor) | 2026-08-08 (Sharma 2026 retinal vascularization) | +Sharma 2026 (retinal organoid application domain) | | (Process discipline) | 2026-08-10 (Phase A batch + first MOC) | +6 deep-reads received 6-field frontmatter; +first MOC `MOC-类器官与3D培养.md` created; +7 image alt descriptions on Wang 2024 — no new external evidence | +| (Subfolder expansion, uncommitted) | 2026-08-13 (new `Review/` subfolder) | +1 untracked file `Review/zhou2023_computer_vision_microfluidics.md` (first review-type subfolder — review papers stream separately from original research) | -The pipeline is **vendor-balanced** — CelVivo, 3Brain, Cellink each have a recent deep read, and the 2026-08-08 flywheel-sync adds **3 papers spanning all 3 primary vendors + the retinal organoid application domain** (Sharma), all 3 rated 4-5 on at least one vendor's product line. The 2026-08-10 cluster is **process discipline** (Phase A metadata batch + first MOC creation + Wang 2024 alt-description sample), not new external evidence — the 6 deep-reads already existed on `main`; the 3 commits only normalize their metadata and add a knowledge-graph index layer. The 2026-08-12 cluster adds **net-new external evidence**: Liang 2026 Sci Rep liver organoid fibrosis platform (4-commit LDR cycle on a single paper, CelVivo ClinoStar ⭐⭐⭐⭐ + ClinoReactor ⭐⭐⭐⭐); this is the **first paper on `main` whose `related:` field already names `[[MOC-类器官与3D培养]]` on the day of publication**, confirming the MOC pattern is in active use on real deep-reads (vs the prior 2026-08-10 "MOC `related:` lists future MOCs" framing which was only prospective). The **first entry in the new NocoDB table `Robin_Picked_Papers`** is Liu 2026 (created 2026-08-08 per Robin instruction to capture papers Robin hand-picks / provides outside the regular PubMed triage). The **first MOC** `MOC-类器官与3D培养.md` is the start of a Map-of-Content layer Robin appears to be building (the MOC's own `related:` already names `[[MOC-3Brain-HD-MEA]]` as the next planned MOC). +The pipeline is **vendor-balanced** — CelVivo, 3Brain, Cellink each have a recent deep read, and the 2026-08-08 flywheel-sync adds **3 papers spanning all 3 primary vendors + the retinal organoid application domain** (Sharma), all 3 rated 4-5 on at least one vendor's product line. The 2026-08-10 cluster is **process discipline** (Phase A metadata batch + first MOC creation + Wang 2024 alt-description sample), not new external evidence — the 6 deep-reads already existed on `main`; the 3 commits only normalize their metadata and add a knowledge-graph index layer. The 2026-08-12 cluster adds **net-new external evidence**: Liang 2026 Sci Rep liver organoid fibrosis platform (4-commit LDR cycle on a single paper, CelVivo ClinoStar ⭐⭐⭐⭐ + ClinoReactor ⭐⭐⭐⭐); this is the **first paper on `main` whose `related:` field already names `[[MOC-类器官与3D培养]]` on the day of publication**, confirming the MOC pattern is in active use on real deep-reads (vs the prior 2026-08-10 "MOC `related:` lists future MOCs" framing which was only prospective). The **first entry in the new NocoDB table `Robin_Picked_Papers`** is Liu 2026 (created 2026-08-08 per Robin instruction to capture papers Robin hand-picks / provides outside the regular PubMed triage). The **first MOC** `MOC-类器官与3D培养.md` is the start of a Map-of-Content layer Robin appears to be building (the MOC's own `related:` already names `[[MOC-3Brain-HD-MEA]]` as the next planned MOC). The 2026-08-13 cluster (no vault commits, 1 new untracked file) **adds a new `Review/` subfolder to the deep-read tree** — Robin appears to be expanding the folder taxonomy to separate review-type papers from original-research papers; whether this is a one-off subfolder or the start of a recurring folder pattern is a watchlist item for the next git-repo fetch. ## Sales ammunition pipeline