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chore: daily update 2026-08-14

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2026-08-14 02:18:06 +08:00
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@@ -1,9 +1,10 @@
---
type: "Reference"
title: "Git repo — evidence index (Obsidian vault, Robin)"
description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD d97b39ed, 2026-08-10) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 2bc03f3, 2026-08-09). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD 297f106d, 2026-08-12) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 1737454, 2026-08-13). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
resource: "~/.openwiki/connectors/git-repo/config.json"
tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-10]
tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-13]
timestamp: 2026-08-13T18:08:25Z
---
# Git repo — evidence index (Obsidian vault + OpenWiki wiki)
@@ -22,36 +23,39 @@ help locate things in the vault, not summarize their content.
- **Configured repos:**
- `obsidian-vault` → `/home/ldw/workspace` (Robin Obsidian vault, on
`main`, HEAD `297f106d2b137af3480261052ff080cbc48d5b48` as of
2026-08-12).
2026-08-12 — unchanged this fetch).
- `openwiki-wiki` → `/home/ldw/.openwiki/wiki` (the OpenWiki knowledge
base itself, on `main`, HEAD `c57ead4bf115dbca5101720db63a7730476d6894`
as of 2026-08-12).
base itself, on `main`, HEAD `1737454ad1b4f06ff9958cc9256c0c611262e44a`
as of 2026-08-13).
- **Auth:** local paths only — no remote, no credentials.
- **Latest fetch:** `2026-08-12T18:08:49Z` (raw manifest
`~/.openwiki/connectors/git-repo/raw/2026-08-12T18-08-49-138Z/manifest.json`).
- **Latest fetch:** `2026-08-13T18:08:25Z` (raw manifest
`~/.openwiki/connectors/git-repo/raw/2026-08-13T18-08-25-206Z/manifest.json`).
- **Source config:** `~/.openwiki/connectors/git-repo/config.json`
- **State:** `~/.openwiki/connectors/git-repo/state.json` records
`latestIds` per repo; the 2026-08-12 fetch bumped `obsidian-vault`
from `d97b39ed` (2026-08-10) to `297f106d` (2026-08-12, 4 new commits
on the same Liang 2026 paper) and bumped `openwiki-wiki` from
`2bc03f3` (2026-08-09) to `c57ead4` (2026-08-12, 2 new commits:
`431ee6a` daily update 2026-08-12 + `c57ead4` sources-sync 2026-08-12).
`latestIds` per repo; the 2026-08-13 fetch observed vault HEAD
unchanged at `297f106d` (no new vault commits in the 24-hour window —
the 2026-08-12 Liang 2026 cluster of 4 commits is still the most
recent vault activity) and bumped `openwiki-wiki` from `c57ead4`
(2026-08-12) to `1737454` (2026-08-13, 2 new commits: `8ddc6d9`
daily update 2026-08-13 + `1737454` sources-sync 2026-08-13).
## obsidian-vault — working-tree status (2026-08-12)
## obsidian-vault — working-tree status (2026-08-13)
- **Branch:** `main`
- **HEAD:** `297f106d2b137af3480261052ff080cbc48d5b48` (vault HEAD after
the **Liang 2026 liver organoid fibrosis platform cluster** on
2026-08-12)
- **Ahead of origin/main:** 13 commits new since 2026-08-03 fetch (the
2026-08-10 cluster of 12 was extended by the 2026-08-12 Liang 2026
cluster of 4 commits on the same paper).
- **Dirty:** yes — same 19 untracked file set as the 2026-08-10 fetch
(8 `02-Clients/Agents/*2026-0807.md` distributor baseline files + the
literature-stage files Robin works on between commits + 5 `文悦精读流水线`
yml variants + `dify精读进度-20260805.md` + `rustdesk-selfhosted-2026-08-05.md`
+ `literature_deepread_v6.py` etc.); the Liang 2026 file moved from
untracked → committed via `e542c977`.
- **HEAD:** `297f106d2b137af3480261052ff080cbc48d5b48` (vault HEAD
**unchanged** since the 2026-08-12 fetch — 0 new commits in the
24-hour window).
- **Ahead of origin/main:** 13 commits new since 2026-08-03 fetch (same
as the 2026-08-12 fetch — the 2026-08-12 Liang 2026 cluster of 4
commits is still the most recent vault activity).
- **Dirty:** yes — the 2026-08-12 untracked file set extended by **2
new untracked files**: (a) `__pycache__/literature_deepread_v6.cpython-312.pyc`
— Python compiled cache file from running `literature_deepread_v6.py`,
build noise, ignored; (b) **`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`** —
**first entry in a new `Review/` subfolder** under
`04-Literature/Deep-Reads/` (the file is **untracked** — Robin has
not yet committed it). This is structurally meaningful — see the
Notable-entity section below.
- **Working-tree status (raw manifest, abbreviated):**
| Status | Path |
@@ -74,15 +78,21 @@ help locate things in the vault, not summarize their content.
| `??` (untracked) | `Miao2025_Cell_v2.md` |
| `??` (untracked) | `Miao2025_Cell_vascularized_organoid.md` |
| `??` (untracked) | `Microbioreactor_2026_Rosero_FrontBioeng.md` |
| `??` (untracked) | `__pycache__/literature_deepread_v6.cpython-312.pyc` — **NEW** (2026-08-13) Python compiled cache file (build noise from running `literature_deepread_v6.py`, ignored) |
| `??` (untracked) | `dify精读进度-20260805.md` |
| `??` (untracked) | `literature_deepread_v6.py` |
| `??` (untracked) | `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` — **NEW** (2026-08-13) **first entry in the new `Review/` subfolder** (Zhou 2023 computer vision + microfluidics — Robin deep-read in progress, untracked, future-commit candidate) |
| `??` (untracked) | `obsidian-vault/rustdesk-selfhosted-2026-08-05.md` |
| `??` (untracked) | `retinal_organoid_deep_read_2026-08-07.md` |
| `??` (untracked) | `文悦精读流水线.yml` + v2/v3/v4/v5-clean variants |
The 8 untracked `*2026-0807.md` files in `02-Clients/Agents/` are the
**2026-08-07 distributor baseline refresh** — see the "Distributor
map refresh (2026-08-07)" section below for synthesis.
map refresh (2026-08-07)" section below for synthesis. The 2 NEW
untracked files this fetch are: (a)
**`Review/zhou2023_computer_vision_microfluidics.md`** — first entry
in a new deep-read subfolder (see Notable-entity entry below);
(b) `__pycache__/...pyc` — build noise, ignored.
### Recent commits (latest first)
@@ -143,6 +153,15 @@ CelVivo ClinoReactor ⭐⭐⭐⭐ (单组织 3 轨道分通道灌流; TGFβ 时
精确切换) + CelVivo PhaseHolographic 成像 ⭐⭐⭐ + 3Brain HD-MEA ⭐⭐⭐
(肝-神经互作延伸).
**No new vault commits landed in the 2026-08-12T18:08Z →
2026-08-13T18:08Z window** — the vault HEAD is unchanged at
`297f106d`. The 2026-08-12 Liang 2026 cluster remains the most recent
committed vault activity. One new uncommitted file appeared in the
working tree this fetch:
`04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`
— the **first entry in a new `Review/` subfolder** (see the
Notable-entity section below).
The **2026-08-10 cluster** is a **frontmatter-hygiene + MOC-discipline
sprint** rather than new external evidence: (a) **Phase A batch**
(`d97b39ed`) standardized 6 deep-read notes with the structured 6-field
@@ -166,37 +185,40 @@ indexed on [`/sources/literature.md`](/sources/literature.md). The
`1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran
on the same paper.
## openwiki-wiki — working-tree status (2026-08-12)
## openwiki-wiki — working-tree status (2026-08-13)
- **Branch:** `main`
- **HEAD:** `c57ead4bf115dbca5101720db63a7730476d6894` (the
- **HEAD:** `1737454ad1b4f06ff9958cc9256c0c611262e44a` (the
`chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts
(sources-sync 2026-08-12)` commit recorded in this run's window).
- **Working-tree state:** 10 modified files (uncommitted — pending next
(sources-sync 2026-08-13)` commit recorded in this run's window).
- **Working-tree state:** 8 modified files (uncommitted — pending next
CLI orchestration). The dirty file set is the **synthesis-layer edits
from the prior 2 source-specific runs in this same 24-hour window**:
- Hackernews-1 (2026-08-12T18:00Z) — Wired organoid feature refresh on
`/themes.md` `class-organoid-3d-bioprinting` Last seen → 2026-08-12;
new "Latest update — 2026-08-12 18:00 UTC" section on
`/sources/hackernews.md`; updated quickstart / index status; tag bump.
- Web-search-1 (2026-08-12, third skip) — Tavily still disabled,
`TAVILY_API_KEY` empty; new "2026-08-12 attempted update — skipped"
section on `/sources/web-search.md`; updated quickstart status.
- Daily source-sync (2026-08-12) — `/sources/nocodb.md` /
`/sources/ragflow.md` / `/sources/seafile.md` / `/sources/wikijs.md`
each got a 6-line counter increment + `openwiki_generated: true`
placeholder frontmatter inserted.
- Literature (2026-08-12) — `/sources/literature.md` got a single
short Liang 2026 row appended (this row is a working-tree add for
the next sources-sync commit; the full synthesis lives at the
paper's vault path and on `/themes/01-organoid-equipment.md` /
`/themes/05-robin-research.md`).
from this same 24-hour window's prior run**:
- Hackernews-1 (2026-08-13T18:00Z, prior run) — MCP Memory using OKF
+ DeepSeek Harness + Codex in ChatGPT Linux desktop refresh on
`/themes.md` `agent-memory-architecture` Last seen → 2026-08-13;
new "Latest update — 2026-08-13 18:00 UTC" section on
`/sources/hackernews.md`; updated quickstart / index status; tag
bump. The HN-1 synthesis edits landed in commit `8ddc6d9` (daily
update 2026-08-13) — but the residual 8 files in the dirty set
carry the in-progress edits from the current git-repo-1 run that
will land in the next CLI orchestration commit.
- Daily source-sync (2026-08-13) — `1737454` source-sync touched
`/sources/nocodb.md` / `/sources/ragflow.md` / `/sources/seafile.md`
/ `/sources/wikijs.md` (4 source counters incremented). The other
4 dirty files (`.last-update.json`, `quickstart.md`,
`sources/hackernews.md`, `themes.md`) carry the synthesis-layer
edits from the prior HN-1 run that landed *after* `1737454`
committed — they were touched during the HN-1 2026-08-13T18:00Z
synthesis pass and are pending the next CLI commit.
- **Auth:** local path only — no remote, no credentials.
### Recent commits (latest first)
| Date | Hash | Note |
| --- | --- | --- |
| 2026-08-13 | `1737454` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-13) |
| 2026-08-13 | `8ddc6d9` | chore: daily update 2026-08-13 (commitment + quickstart + sources/literature + sources/web-search + themes/01-organoid-equipment + themes/05-robin-research from the HN-1 2026-08-13 synthesis pass) |
| 2026-08-12 | `c57ead4` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-12) |
| 2026-08-12 | `431ee6a` | chore: daily update 2026-08-12 |
| 2026-08-11 | `b64ae41` | lit: PMID 41536916 Bioactive Materials AIVOs 综述 (Wiki.js 1711) |
@@ -254,9 +276,9 @@ when the synthesis pipeline catches up.
| Window (UTC) | Vault | Wiki |
| --- | --- | --- |
| 2026-08-11T18:00:00Z → 2026-08-12T18:08:49Z | HEAD `d97b39ed` → `297f106d` (4 new commits, all on Liang 2026 liver organoid fibrosis paper deep-read) | HEAD `2bc03f3` → `c57ead4` (2 new commits; 6 commits since prior fetch also recorded here: daily + sources-sync on 2026-08-11; literature deep-read cycle on PMID 42041571 OVB-organoids + 3 2026-08-11 PMID entries) |
| **Net new external evidence** | **Liang Y et al. (2026) Sci Rep DOI 10.1038/s41598-026-42990-2** — mouse liver organoid 3-轨道 (Hep/Cho/HSC) + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型; Wiki.js Id=1716, NocoDB Id=770 | none — synthesis layer only (HN-1 Wired organoid refresh + web-search-1 third skip) |
| Untracked → committed migrations | `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (was untracked in 2026-08-10 fetch, now committed via `e542c977`) | none — all 10 dirty files (`.last-update.json`, `quickstart.md`, 4 × sources/{hackernews,web-search,literature,nocodb,ragflow,seafile,wikijs}.md, `themes.md`) are uncommitted synthesis edits awaiting the next CLI commit cycle |
| 2026-08-12T18:08:49Z → 2026-08-13T18:08:25Z | HEAD `297f106d` → `297f106d` (**0 new commits**; the 2026-08-12 Liang 2026 4-commit LDR cycle remains the most recent vault activity) | HEAD `c57ead4` → `1737454` (2 new commits: `8ddc6d9` daily update 2026-08-13 + `1737454` sources-sync 2026-08-13) |
| **Net new external evidence** | none on the vault side; **1 new untracked file** (`Review/zhou2023_computer_vision_microfluidics.md` — first entry in a new deep-read `Review/` subfolder; uncommitted) + 1 noise file (`__pycache__/...pyc`, ignored) | none — synthesis layer only (HN-1 2026-08-13 MCP Memory using OKF refresh; the HN-1 synthesis edits landed in `8ddc6d9`; this run's edits are pending the next CLI commit) |
| Untracked → committed migrations | none | none — the 8 dirty files (`.last-update.json`, `quickstart.md`, `sources/hackernews.md`, `sources/nocodb.md`, `sources/ragflow.md`, `sources/seafile.md`, `sources/wikijs.md`, `themes.md`) are uncommitted synthesis edits from this run, awaiting the next CLI commit cycle |
## Vault navigation index
@@ -308,9 +330,12 @@ Markdown file counts per deep-read subfolder:
| `Retinal/` | 1 |
| `Microbioreactor/` | 1 (new as of 2026-08-07 — Rosero 2026 Front Bioeng Biotechnol) |
| `Cells/` | 1 (new as of 2026-08-08 — Fernandez Vallone 2026 Cells THSDC) |
| `Review/` | 1 (new as of 2026-08-13 — Zhou 2023 computer vision + microfluidics, **untracked**) |
Total ≈ 1,204 deep-read notes (+2 from the 2026-08-07 / 2026-08-08
cluster: Microbioreactor 2026 + Cells 2026 Fernandez Vallone). CelVivo,
Total ≈ 1,205 deep-read notes (+1 from the 2026-08-13 cluster:
Review/ zhou2023 computer vision + microfluidics, **untracked** — only
counts once committed). The 2026-08-07 / 2026-08-08 cluster (Microbioreactor
+ Cells) remains the most recent committed deep-read additions. CelVivo,
3Brain, Cellink, and the broad `Organoid/` bucket cover Robin's product
KB per the wiki goal focus areas (类器官培养与设备, 3D 生物打印).
@@ -373,6 +398,7 @@ fields still 待补).
## Notable entities surfaced by the vault (structural hints only)
- **Review/ subfolder — first entry (2026-08-13, uncommitted)** — `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` is the **first file in a new `Review/` subfolder** under `04-Literature/Deep-Reads/`. The file is **untracked** (Robin has not yet committed it) so the synthesis is provisional, but the path naming convention (`zhou2023_computer_vision_microfluidics.md`) matches Robin's standard deep-read naming pattern (`author-year-keyword-keyword.md`). Likely content: Zhou et al. (2023) computer-vision + microfluidics cross-review paper — a **review-type** paper (rather than an original-research paper) that Robin is collecting as part of his broader organoid + microfluidic cross-anchor reading list. **Structural significance**: the `Review/` subfolder is new — none of the existing 19 subfolders (`Organoid/`, `Celvivo/`, `3Brain/`, `Cellink/`, `Organoid-List/`, `Product-Reports/`, `Brain/`, `Brain-Tumor/`, `Cancer/`, `Liver/`, `Other/`, `RegenMed/`, `3Brain MEA/`, `Cardiac/`, `Kidney/`, `Retinal/`, `Microbioreactor/`, `Cells/`) explicitly segregates review-type papers. A `Review/` subfolder signals Robin may be formalizing the review-paper stream separately from the original-research stream. **No synthesis routes** until the file is committed — the deep-read synthesis page + any vendor-mapping should land after Robin commits the file and the standard 8-step LDR pipeline publishes it to Wiki.js / NocoDB / SeaFile. Track on the next git-repo fetch whether (a) the file is committed, (b) the `Review/` subfolder accumulates additional entries, and (c) the standard page-946 9 项 SOP + page-934 修齐 alignment is applied.
- **Liang 2026 liver organoid fibrosis platform (2026-08-12)** — `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (170 lines; `[[MOC-类器官与3D培养]]` already names this paper via `related:` back-link). The paper is **the net-new external evidence** this run (git-repo-1 2026-08-12) brought into the vault; see synthesis at `/themes/01-organoid-equipment.md` § CelVivo evidence (added 2026-08-12) and `/commitments.md` `liang-2026-celvivo-clinostar-positioning`. Single-paper LDR cycle: 4 commits (`e542c977` → `8699a154` → `aacba7aa` → `297f106d`) walked Robin's standard 3-stage SOP on the same file (186 lines → 105+/122- page 946 rewrite → page 934 修齐 micro-revisions). The 4-star "与我们的产品" table on the paper lists **CelVivo ClinoStar ⭐⭐⭐⭐** (P1-P10 长程扩增对应旋转培养 30+ 天无剪切; HSC 静止态在模拟微重力下 7+ 天维持) + **CelVivo ClinoReactor ⭐⭐⭐⭐** (单组织 3 轨道分通道灌流; TGFβ 时间程序精确切换) — **parallel CelVivo ClinoStar rating 5 to Miao 2025 v2's ClinoStar rating 5** from the 2026-08-08 flywheel-sync, but for liver organoid (long-term maturation + fibrosis modeling) rather than lung organoid (vascularization). 7 SeaFile Fig (Fig1-7) + 4-paper 参考文献 (Huch 2013 / Huch 2015 / Clevers 2016). Customer-entry: 药企临床前 (抗纤维化药筛) + 临床肝活检中心 (1-2 mg → 3 周药敏) + 学术 PI (2D vs 3D 旋转 efficiency). **MOC linkage**: the paper's `related:` field already names `[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) — confirming the MOC pattern is in active use on real deep-reads.
- **CelVivo industrial customers program** — a dedicated subfolder under
`05-Documents/Products/Celvivo/Industrial-Customers/` holds `CelVivo_中国工业
@@ -454,43 +480,57 @@ fields still 待补).
## Synthesis policy for this source
- **This run (2026-08-12, git-repo-1 18:08Z):** 4 new vault commits
landed in the 24-hour window — all on the **same single Liang 2026
Sci Rep liver organoid paper**, walked through Robin's standard
3-stage LDR cycle (`e542c977` adds the file → `8699a154` page 946 9
项 SOP 重写版 → `aacba7aa` + `297f106d` page 934 修齐 micro-revisions).
This is the **net-new external evidence** this run brings into the
vault: **Liang Y et al. (2026) Sci Rep DOI 10.1038/s41598-026-42990-2**
— mouse liver organoid 3-轨道 (Hep-Orgs + Cho-Orgs + HSC) +
DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型 (EMT + Ki67↓ +
stemness↓). Wiki.js Id=1716, NocoDB Id=770, PMID 41857098. Wiki
edits this run: (a) `/sources/git-repo.md` (this page) — refreshed
HEAD pointers, added 4 commits to the recent-commits table, added a
new "Liang 2026 liver organoid fibrosis platform (2026-08-12)"
Notable-entity entry, refreshed synthesis-policy section, updated
openwiki-wiki working-tree status section; (b) `/themes/05-robin-research.md` — vault
HEAD `d97b39ed` → `297f106d`, "Latest cluster (2026-08-10)" →
"Latest cluster (2026-08-12)", added a new top-row entry to the
30-day research-output table for the Liang 2026 cluster, updated
the by-vendor CelVivo row to include the Liang 2026 ClinoStar
rating-5 entry; (c) `/themes/01-organoid-equipment.md` — added
Liang 2026 to the CelVivo evidence anchors (ClinoStar rating 4 for
P1-P10 长程 + 旋转 30+ 天无剪切; ClinoReactor rating 4 for 单组织 3
轨道分通道灌流 + TGFβ 时间程序; PhaseHolographic imaging rating 3;
3Brain HD-MEA rating 3 for 肝-神经互作延伸); (d) `/commitments.md`
— added `liang-2026-celvivo-clinostar-positioning` (Owner: me, fold
Liang 2026 长程成熟 + 体外纤维化模型 story into CelVivo ClinoStar
sales narrative; companion to existing `miao-2025-celvivo-clinostar-positioning`).
**No `/open-questions.md` row, no `/personal-logistics.md` item** —
the Liang 2026 paper is fully published and the synthesis is direct;
no ambiguity that requires a memory-graph open question. No
`/themes.md` row change (the Liang 2026 evidence is a single-paper
flywheel-sync output, not a recurring signal — it routes into the
existing `class-organoid-3d-bioprinting` and `china-cde-cell-gene-therapy-rules-2026`
vendor theme evidence without needing a new theme row). The
previous run (2026-08-10) was the prior frontmatter-hygiene +
MOC-discipline sprint; the 2026-08-08 run was the substantive
distributor / Liu-2026-roadmap / `_known_associations.md` update.
- **This run (2026-08-13, git-repo-1 18:08Z):** **0 new vault commits**
in the 24-hour window — the vault HEAD is unchanged at `297f106d`
(the 2026-08-12 Liang 2026 4-commit LDR cluster remains the most
recent vault activity). The only vault-side delta is **1 new
untracked file**: `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md`
— the **first entry in a new `Review/` subfolder** under
`04-Literature/Deep-Reads/` (see Notable-entity entry above). 1
noise file (`__pycache__/...pyc`) is ignored. Wiki-side: **2 new
wiki commits** landed (`8ddc6d9` daily update 2026-08-13 + `1737454`
sources-sync 2026-08-13), advancing HEAD from `c57ead4` (2026-08-12)
to `1737454` (2026-08-13). 8 dirty wiki files in the working tree
(`.last-update.json` + `quickstart.md` + 4 × sources/{hackernews,
nocodb, ragflow, seafile, wikijs}.md + `themes.md`) are
synthesis-layer edits from the prior HN-1 2026-08-13 run that
landed after `1737454` committed and are pending the next CLI
orchestration commit. Wiki edits this run: (a) `/sources/git-repo.md`
(this page) — refreshed HEAD pointers (vault HEAD unchanged,
wiki HEAD `c57ead4` → `1737454`), refreshed the untracked-file
enumeration with 2 NEW rows (`__pycache__/...pyc` + the new
`Review/zhou2023_computer_vision_microfluidics.md`), refreshed the
openwiki-wiki working-tree-status section to 2026-08-13, refreshed
the recent-commits table with `8ddc6d9` + `1737454`, refreshed the
Summary of last 24 hours table to reflect 0 vault commits / 2 wiki
commits, added a new "Review/ subfolder — first entry (2026-08-13,
uncommitted)" Notable-entity entry (structural significance of the
new subfolder), refreshed the synthesis-policy section with this
run's delta summary; (b) `/themes/05-robin-research.md` — added the
new `Review/` subfolder row to the `04-Literature/Deep-Reads/`
breakdown table, refreshed vault-snapshot metadata (latest fetch
timestamp + raw-manifest path + working-tree state); (c)
`/quickstart.md` — added the "Latest update — git-repo-1
(2026-08-13T18:08Z)" paragraph ahead of the current
"Latest update — hackernews-1 (2026-08-13T18:00Z)" paragraph; demoted
the HN-1 paragraph to a prior-run reference; updated the Backlog
git-repo entry to reflect the new untracked `Review/` file.
**No `/commitments.md` row, no `/open-questions.md` row, no
`/personal-logistics.md` item, no `/themes.md` row change** — the
vault delta is a single uncommitted file, not a published artifact,
and the existing 2026-08-12 Liang 2026 commitment /
`class-organoid-3d-bioprinting` theme row already cover the
structural evidence.
- **Previous run (2026-08-12, git-repo-1 18:08Z):** 4 new vault commits
on the **same single Liang 2026 Sci Rep liver organoid paper** walked
through Robin's standard 3-stage LDR cycle (`e542c977` adds file →
`8699a154` page 946 9 项 SOP 重写版 → `aacba7aa` + `297f106d`
page 934 修齐 micro-revisions) — this was the **net-new external
evidence** for that run. Wiki edits at that time are described in
the synthesis-policy paragraph above; the canonical synthesis
continues to live at `/themes/01-organoid-equipment.md`,
`/themes/05-robin-research.md`, and `/commitments.md`
`liang-2026-celvivo-clinostar-positioning`.
- The vault is a knowledge base, not a live signal stream; durable
per-document synthesis (paper deep reads, sales scripts, customer
files) requires reading individual files, which is delegated to the
@@ -499,21 +539,26 @@ fields still 待补).
theme only when the connector observes a recurring workflow (e.g. weekly
literature digest cadence, sales training iteration pattern) across multiple
fetches.
- **Process signal worth watching (2026-08-12):** (a) **Liang 2026's
MOC linkage confirms the MOC pattern is in active use** — the new
paper's `related:` field already names
- **Process signal worth watching (2026-08-13):** (a) **New `Review/`
subfolder signal** — Robin added a 20th subfolder under
`04-Literature/Deep-Reads/` dedicated to review-type papers, with
`zhou2023_computer_vision_microfluidics.md` as the first entry. If
the subfolder accumulates ≥3 entries, this signals a formal
review-paper stream is being built separately from the
original-research stream; if it stays at 1 entry, it's a one-off.
(b) **Liang 2026's MOC linkage confirms the MOC pattern is in active
use** — the paper's `related:` field already names
`[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) on the
day of publication, not a future-state plan. This is a stronger
signal than the prior "MOC `related:` lists future MOCs" framing
implied. Track on the next git-repo fetch whether more papers
acquire MOC `related:` back-links and whether MOC-3Brain-HD-MEA /
MOC-Cellink-BIO-X land. (b) **Page 934 修齐 micro-revisions now
appear on every new LDR cycle** — `297f106d` is the second paper
(after `381fcbaa` OVB-organoids 2026-08-11) where Robin applied
the H1 去括号 / 元数据 bold / 📄PDF 文件名 alignment. The pattern
appears to be the new standard end-state. (c) **Phase A frontmatter
batch rollout** is still paused (only 6 of ~1,204 deep-reads
received the 6-field frontmatter); no progress this run.
day of publication, not a future-state plan. Track on the next
git-repo fetch whether more papers acquire MOC `related:` back-links
and whether MOC-3Brain-HD-MEA / MOC-Cellink-BIO-X land. (c) **Page
934 修齐 micro-revisions now appear on every new LDR cycle** —
`297f106d` is the second paper (after `381fcbaa` OVB-organoids
2026-08-11) where Robin applied the H1 去括号 / 元数据 bold /
📄PDF 文件名 alignment. The pattern appears to be the new standard
end-state. (d) **Phase A frontmatter batch rollout** is still
paused (only 6 of ~1,204 deep-reads received the 6-field
frontmatter); no progress this run.
## Next update