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Reference Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin) Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `391e4713`, 2026-09-07, **vault HEAD unchanged** at the 2026-08-31T18:09Z fetch level for the 7th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster, **0 new vault commits** in the 2026-09-06T18:19Z → 2026-09-07T18:08Z 24-hour window, **7 calendar days of vault silence** since the 2026-08-31 cluster (Yan + Stewart + Nguyen + Aiello + Miao all `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 26 → **27-day carry-forward** (24 → **25 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 21 → **22-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + **2026-09-07** fetches), `deepread_40240593/` 14 → **15-day carry-forward** (mtime unchanged across **14 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `3e04ce75d3b61e5c71c0c86f655097004084c713`, 2026-09-07, **2 new automated wiki commits in the 2026-09-06T18:19Z → 2026-09-07T18:08Z 24-hour window: `56aeb69` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-07 — the **twenty-fourth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + `bd30339` 2026-08-20 + `f6c2576` 2026-08-21 + `43d4548` 2026-08-22 + `8f8f767` 2026-08-23 + `127c2dc` 2026-08-24 + `1003b92` 2026-08-25 + `ebb95c0` 2026-08-26 + `502281f` 2026-08-27 + `c992dd6` 2026-08-28 + `37d1ba6` 2026-08-29 + `d56da3a` 2026-08-30 + `9582dea` 2026-08-31 + `0890fdb` 2026-09-01 + `cedbb7f` 2026-09-02 + `58168e7` 2026-09-03 + `88635ed` 2026-09-04 + `0be3b8a` 2026-09-05 + `0f8555e` 2026-09-06 + now `56aeb69` 2026-09-07) committed `sources/{nocodb,ragflow,seafile,wikijs}.md` re-touched by the sources-sync, then `3e04ce7` chore: daily update 2026-09-07 (per `git show --stat 3e04ce7` the commit touched 16 files including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/openwiki-version-drift.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md`); the very next synthesis edits from the HN-1 2026-09-07 (skipped, next pull after the 2026-09-06 18:00 UTC pull — the 2026-09-07T18:08Z fetch is the git-repo-1 slot in the daily update cycle) + web-search-1 2026-09-07 (skipped) + this git-repo-1 2026-09-07T18:08Z run re-touched files leaving the dirty count at **4 per the manifest `changedFiles` list** — `M .last-update.json` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/web-search.md` — **down from 11** at the 2026-09-06T18:19Z fetch (the `3e04ce7` daily update on 2026-09-07 re-touched 16 files including all 11 from the 2026-09-06 dirty baseline + 5 more, then the synthesis edits cleared 12 of those via commit leaving only 4 still dirty); the 4-dirty-file list does not include `index.md` (the `3e04ce7` daily update on 2026-09-07 re-touched it then cleared it via commit) or `sources/git-repo.md` + `sources/README.md` + `sources/index.md` (the `3e04ce7` daily update on 2026-09-07 re-touched them then cleared them via commit) or `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` + `sources/openwiki-version-drift.md` (the `3e04ce7` daily update on 2026-09-07 re-touched them via commit + the `56aeb69` sources-sync on 2026-09-07 re-touched 4 of those) or `themes.md` + `themes/05-robin-research.md` + `themes/index.md` (the `3e04ce7` daily update on 2026-09-07 re-touched them then cleared them via commit)**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
sources
git-repo
vault
wiki
manifest
2026-09-07
2026-09-06
2026-09-05
2026-09-04
2026-09-03
2026-09-02
2026-09-01
2026-08-31
vault-silent-7d
twenty-fourth-sources-sync
review-templates-celvivo-commercial-confirmed-one-off
deepread-40240593-fifteen-silent-fetches
2026-09-07T18:08:00Z

Git repo — evidence index

This page is the compact source-evidence index for the local git-repo connector, which ingests Robin's Obsidian vault (/home/ldw/workspace) and the local OpenWiki wiki (/home/ldw/.openwiki/wiki). Each ingestion run writes a JSON manifest under ~/.openwiki/connectors/git-repo/raw/.

Source config

  • Connector config path: ~/.openwiki/connectors/git-repo/config.json
  • Two configured local repos:
    • obsidian-vault at /home/ldw/workspace (branch: main, HEAD 391e4713, 2026-08-31 — 35 commits since 2026-08-03 fetch)
    • openwiki-wiki at /home/ldw/.openwiki/wiki (branch: main, HEAD 3e04ce7, 2026-09-07)
  • Authentication: local path only — no remote, no credentials

Latest manifest

  • ~/.openwiki/connectors/git-repo/raw/2026-09-07T18-08-20-982Z/manifest.json (generated 2026-09-07T18:08:21Z)
  • Vault HEAD: 391e47131679ce9edf0f525236e78ebb13e0d232 (unchanged since 2026-08-31T13:42 +0800)
  • Wiki HEAD: 3e04ce75d3b61e5c71c0c86f655097004084c713 (bumped from 0f8555e at 2026-09-07)
  • 0 new vault commits in the 24-hour window (vault silent for the 7th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster)
  • 2 new automated wiki commits in the 24-hour window (56aeb69 sources-sync 2026-09-07 — the twenty-fourth consecutive sources-sync + 3e04ce7 daily update 2026-09-07)
  • 4 uncommitted wiki files in working tree per the manifest changedFiles list (down from 11 at the 2026-09-06T18:19Z fetch; the 3e04ce7 daily update cleared index.md + sources/{git-repo,README,index}.md + sources/{nocodb,ragflow,seafile,wikijs,openwiki-version-drift}.md + themes.md + themes/05-robin-research.md + themes/index.md via commit, leaving only M .last-update.json + M quickstart.md + M sources/hackernews.md + M sources/web-search.md still dirty after the synthesis edits)

Carry-forward untracked directories

Directory / file Carry-forward Fetches silent Status
Review/zhou2023_computer_vision_microfluidics.md 27-day 25 stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch)
celvivo_commercial/ 22-day 22 stale carry-forward note (confirmed one-off alongside Review/ at 2026-08-28 fetch)
templates/ 22-day 22 stale carry-forward note (confirmed one-off alongside Review/ at 2026-08-28 fetch)
deepread_40240593/ 15-day 14 working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 14 consecutive silent fetches since creation)

Recent commits — vault (last 5)

The most recent vault commits remain the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR burst (no new commits in the 24-hour window):

  1. 391e4713 2026-08-31 — deep-read: Yan 2024 Cell Reports TMEM106B SARS-CoV-2 ACE2-independent brain organoids (CelVivo)
  2. 4fca0123 2026-08-31 — deep-read: Miao 2025 Cell vascularized lung/gut organoids (CelVivo ClinoReactor)
  3. fad7e21e 2026-08-31 — deep-read: Nguyen 2024 npj Viruses JEV G4 2022 Australia brain organoids (CelVivo)
  4. 030f31ed 2026-08-31 — deep-read: Aiello 2025 EMBO reports reproducible brain organoids (CelVivo ClinoReactor)
  5. eb24ab72 2026-08-31 — deep-read: Stewart 2023 Front Microbiol BA.5/XBB neurotropic brain organoids (CelVivo)

Recent commits — wiki (last 5)

  1. 3e04ce7 2026-09-07 — chore: daily update 2026-09-07 (16 files modified per git show --stat 3e04ce7)
  2. 56aeb69 2026-09-07 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-07, twenty-fourth consecutive sources-sync)
  3. 0f8555e 2026-09-06 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-06, twenty-third consecutive sources-sync)
  4. 2c75e4a 2026-09-06 — chore: daily update 2026-09-06 (16 files modified per git show --stat 2c75e4a)
  5. 0be3b8a 2026-09-05 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-05, twenty-second consecutive sources-sync)

Synthesis-policy — this run

  • Vault delta: empty (no new commits, no new mtime changes).
  • Wiki delta: automated maintenance only (CLI metadata cycle + sources-sync + daily update).
  • Synthesis-layer impact: none. The themes / commitments / open-questions / personal-logistics pages are independent of the wiki-side automated maintenance commits.
  • Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-07T18:08Z)" paragraph on /quickstart.md for the full delta list.

Previous run

  • 2026-09-06T18:19Z — vault HEAD unchanged at 391e4713, 2 new wiki commits (2c75e4a + 0f8555e — the twenty-third consecutive sources-sync), 11-dirty-file baseline, the 4 carry-forward untracked directories bumped to 26/21/21/14-day carry-forward. See /themes/05-robin-research.md + /quickstart.md for the full synthesis of that run.
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