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Reference Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin) Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `391e4713`, 2026-09-06, **vault HEAD unchanged** at the 2026-08-31T18:09Z fetch level for the 6th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster, **0 new vault commits** in the 2026-09-05T18:18Z → 2026-09-06T18:19Z 24-hour window, **6 calendar days of vault silence** since the 2026-08-31 cluster (Yan + Stewart + Nguyen + Aiello + Miao all `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 25 → **26-day carry-forward** (23 → **24 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 20 → **21-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + **2026-09-06** fetches), `deepread_40240593/` 13 → **14-day carry-forward** (mtime unchanged across **13 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `0f8555e3d9415f586bfafcf396cf6f5901f8efda`, 2026-09-06, **2 new automated wiki commits in the 2026-09-05T18:18Z → 2026-09-06T18:19Z 24-hour window: `2c75e4a` chore: daily update 2026-09-06 (per `git show --stat 2c75e4a` the commit touched 16 files including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md`), then `0f8555e` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-06 — the **twenty-third** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + `bd30339` 2026-08-20 + `f6c2576` 2026-08-21 + `43d4548` 2026-08-22 + `8f8f767` 2026-08-23 + `127c2dc` 2026-08-24 + `1003b92` 2026-08-25 + `ebb95c0` 2026-08-26 + `502281f` 2026-08-27 + `c992dd6` 2026-08-28 + `37d1ba6` 2026-08-29 + `d56da3a` 2026-08-30 + `9582dea` 2026-08-31 + `0890fdb` 2026-09-01 + `cedbb7f` 2026-09-02 + `58168e7` 2026-09-03 + `88635ed` 2026-09-04 + `0be3b8a` 2026-09-05 + now `0f8555e` 2026-09-06) committed `sources/{nocodb,ragflow,seafile,wikijs}.md` re-touched by the sources-sync; the very next synthesis edits from the HN-1 2026-09-06T18:00Z + web-search-1 2026-09-06 (skipped) + this git-repo-1 2026-09-06T18:19Z run re-touch the same files leaving the dirty count at **11 per the manifest `changedFiles` list** — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` — **same count as the 2026-09-05T18:18Z fetch's 11-dirty-file baseline** (the 2026-09-06 daily update cleared `sources/index.md` from the dirty set and re-touched `sources/openwiki-version-drift.md` instead, so the file composition shifted but the count stayed at 11); the 11-dirty-file list does not include `sources/index.md` (the `2c75e4a` daily update on 2026-09-06 re-touched it then cleared it via commit) or `themes/05-robin-research.md` (the `2c75e4a` daily update on 2026-09-06 re-touched it) or `sources/git-repo.md` + `sources/README.md` (the 2026-09-05 daily update had re-touched them and the 2026-09-06 daily update did not re-touch them in the same cycle) or `themes/index.md` (the 2026-09-05 daily update had re-touched it)**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
sources
git-repo
vault
wiki
manifest
2026-09-06
2026-09-05
2026-09-04
2026-09-03
2026-09-02
2026-09-01
2026-08-31
vault-silent-6d
twenty-third-sources-sync
review-templates-celvivo-commercial-confirmed-one-off
deepread-40240593-fourteen-silent-fetches
2026-09-06T18:19:00Z

Git repo — evidence index

This page is the compact source-evidence index for the local git-repo connector, which ingests Robin's Obsidian vault (/home/ldw/workspace) and the local OpenWiki wiki (/home/ldw/.openwiki/wiki). Each ingestion run writes a JSON manifest under ~/.openwiki/connectors/git-repo/raw/.

Source config

  • Connector config path: ~/.openwiki/connectors/git-repo/config.json
  • Two configured local repos:
    • obsidian-vault at /home/ldw/workspace (branch: main, HEAD 391e4713, 2026-08-31 — 35 commits since 2026-08-03 fetch)
    • openwiki-wiki at /home/ldw/.openwiki/wiki (branch: main, HEAD 0f8555e, 2026-09-06)
  • Authentication: local path only — no remote, no credentials

Latest manifest

  • ~/.openwiki/connectors/git-repo/raw/2026-09-06T18-19-11-268Z/manifest.json (generated 2026-09-06T18:19:11Z)
  • Vault HEAD: 391e47131679ce9edf0f525236e78ebb13e0d232 (unchanged since 2026-08-31T13:42 +0800)
  • Wiki HEAD: 0f8555e3d9415f586bfafcf396cf6f5901f8efda (bumped from 0be3b8a at 2026-09-06)
  • 0 new vault commits in the 24-hour window (vault silent for the 6th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster)
  • 2 new automated wiki commits in the 24-hour window (2c75e4a daily update 2026-09-06 + 0f8555e sources-sync 2026-09-06 — the twenty-third consecutive sources-sync)
  • 11 uncommitted wiki files in working tree per the manifest changedFiles list (same count as the 11-dirty-file baseline at the 2026-09-05T18:18Z fetch; the 2c75e4a daily update cleared sources/index.md and re-touched sources/openwiki-version-drift.md so the file composition shifted but the count stayed at 11)

Carry-forward untracked directories

Directory / file Carry-forward Fetches silent Status
Review/zhou2023_computer_vision_microfluidics.md 26-day 24 stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch)
celvivo_commercial/ 21-day 21 stale carry-forward note (confirmed one-off alongside Review/ at 2026-08-28 fetch)
templates/ 21-day 21 stale carry-forward note (confirmed one-off alongside Review/ at 2026-08-28 fetch)
deepread_40240593/ 14-day 13 working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 13 consecutive silent fetches since creation)

Recent commits — vault (last 5)

The most recent vault commits remain the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR burst (no new commits in the 24-hour window):

  1. 391e4713 2026-08-31 — deep-read: Yan 2024 Cell Reports TMEM106B SARS-CoV-2 ACE2-independent brain organoids (CelVivo)
  2. 4fca0123 2026-08-31 — deep-read: Miao 2025 Cell vascularized lung/gut organoids (CelVivo ClinoReactor)
  3. fad7e21e 2026-08-31 — deep-read: Nguyen 2024 npj Viruses JEV G4 2022 Australia brain organoids (CelVivo)
  4. 030f31ed 2026-08-31 — deep-read: Aiello 2025 EMBO reports reproducible brain organoids (CelVivo ClinoReactor)
  5. eb24ab72 2026-08-31 — deep-read: Stewart 2023 Front Microbiol BA.5/XBB neurotropic brain organoids (CelVivo)

Recent commits — wiki (last 5)

  1. 0f8555e 2026-09-06 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-06, twenty-third consecutive sources-sync)
  2. 2c75e4a 2026-09-06 — chore: daily update 2026-09-06 (16 files modified per git show --stat 2c75e4a)
  3. 0be3b8a 2026-09-05 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-05, twenty-second consecutive sources-sync)
  4. ca1acf8 2026-09-05 — chore: daily update 2026-09-05 (16 files modified per git show --stat ca1acf8)
  5. 88635ed 2026-09-04 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-04, twenty-first consecutive sources-sync)

Synthesis-policy — this run

  • Vault delta: empty (no new commits, no new mtime changes).
  • Wiki delta: automated maintenance only.
  • Synthesis-layer impact: none. The themes / commitments / open-questions / personal-logistics pages are independent of the wiki-side automated maintenance commits.
  • Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-06T18:19Z)" paragraph on /quickstart.md for the full delta list.

Previous run

  • 2026-09-05T18:18Z — vault HEAD unchanged at 391e4713, 2 new wiki commits (ca1acf8 + 0be3b8a — the twenty-second consecutive sources-sync), 11-dirty-file baseline, the 4 carry-forward untracked directories bumped to 25/20/20/13-day carry-forward. See /themes/05-robin-research.md + /quickstart.md for the full synthesis of that run.
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