--- type: "Reference" title: "Git repo — evidence index (Obsidian vault, Robin)" description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD d7df3830, 2026-08-08) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD c94940c7, 2026-08-08). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here." resource: "~/.openwiki/connectors/git-repo/config.json" tags: [git-repo, evidence, vault, openwiki-wiki, source] --- # Git repo — evidence index (Obsidian vault + OpenWiki wiki) Compact manifest of the two local git repos configured under the `git-repo` connector: Robin's Obsidian vault and the local OpenWiki wiki. This page is a **navigation index** — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here. Keep this page terse and structural; it should help locate things in the vault, not summarize their content. ## Connector - **Source instance:** `git-repo-1` (configured under `~/.openwiki/connectors/git-repo/config.json`) - **Configured repos:** - `obsidian-vault` → `/home/ldw/workspace` (Robin Obsidian vault, on `main`, HEAD `d7df3830a28a48b0129a46729ab2357e231a2ec5` as of 2026-08-08). - `openwiki-wiki` → `/home/ldw/.openwiki/wiki` (the OpenWiki knowledge base itself, on `main`, HEAD `c94940c7d24bdf77680822a86c81355acff93ebf` as of 2026-08-08). - **Auth:** local paths only — no remote, no credentials. - **Latest fetch:** `2026-08-08T18:11:31Z` (raw manifest `~/.openwiki/connectors/git-repo/raw/2026-08-08T18-11-31-856Z/manifest.json`). - **Source config:** `~/.openwiki/connectors/git-repo/config.json` - **State:** `~/.openwiki/connectors/git-repo/state.json` records `latestIds` per repo; the 2026-08-08 fetch bumped both `obsidian-vault` (from `2341383e` to `d7df3830`) and `openwiki-wiki` (from `45af5a4` / `9e80977` to `c94940c7`). ## obsidian-vault — working-tree status (2026-08-08) - **Branch:** `main` - **HEAD:** `d7df3830a28a48b0129a46729ab2357e231a2ec5` (obsidian-vault top of new remote / post-8-07 sweep) - **Ahead of origin/main:** 9 commits (the 2026-07-29 / 2026-07-28 cluster was extended by 4–5 new deep-read commits on 2026-08-07 / 2026-08-08). - **Dirty:** yes — 8 untracked 8-07 distributor/agent files + the literature-stage files Robin works on between commits. - **Working-tree status (raw manifest, abbreviated):** | Status | Path | | --- | --- | | `M` (committed 2026-08-08) | `obsidian-vault/04-Literature/Deep-Reads/Cells/fernandez-vallone-2026-thsdc-brain-organoids.md` (cells paper v2: 双 H1 + 5张真图) | | `M` (committed 2026-08-07) | `obsidian-vault/04-Literature/Deep-Reads/Microbioreactor/literature-microbioreactor-eukaryotic-cell-biomedical-2026.md` (fix v2 with SeaFile links) | | `??` (untracked) | `02-Clients/Agents/全国经销商地图-2026-0807.md` | | `??` (untracked) | `02-Clients/Agents/华北-2026-0807.md` | | `??` (untracked) | `02-Clients/Agents/华东-2026-0807.md` | | `??` (untracked) | `02-Clients/Agents/华南-2026-0807.md` | | `??` (untracked) | `02-Clients/Agents/山东-2026-0807.md` | | `??` (untracked) | `02-Clients/Agents/湖北-2026-0807.md` | | `??` (untracked) | `02-Clients/Agents/西北-2026-0807.md` | | `??` (untracked) | `02-Clients/Agents/西南-2026-0807.md` | | `??` (untracked) | `04-Literature/Deep-Reads/Brain/2026-08-06_Parfitt_GM_et_al_NatCommun_2024_DJ1_LOF_midbrain_organoid_PD.md` | | `??` (untracked) | `Liu2026_NBME_shape_conformal_organoid.md` | | `??` (untracked) | `Miao2025_Cell_v2.md` | | `??` (untracked) | `Miao2025_Cell_vascularized_organoid.md` | | `??` (untracked) | `Microbioreactor_2026_Rosero_FrontBioeng.md` | | `??` (untracked) | `dify精读进度-20260805.md` | | `??` (untracked) | `literature_deepread_v6.py` | | `??` (untracked) | `obsidian-vault/rustdesk-selfhosted-2026-08-05.md` | | `??` (untracked) | `retinal_organoid_deep_read_2026-08-07.md` | | `??` (untracked) | `文悦精读流水线.yml` + v2/v3/v4/v5-clean variants | The 8 untracked `*2026-0807.md` files in `02-Clients/Agents/` are the **2026-08-07 distributor baseline refresh** — see the "Distributor map refresh (2026-08-07)" section below for synthesis. ### Recent commits (latest first) | Date | Hash | Note | | --- | --- | --- | | 2026-08-08 | `d7df3830` | cells paper v2: 双 H1 + 5张真图 (xref) — Fernandez Vallone 2026 | | 2026-08-08 | `6c16dc05` | 精读: Fernandez Vallone 2026 Cells hiPSC 脑类器官 THSDC | | 2026-08-07 | `65fef021` | fix: v2 with SeaFile links — Microbioreactor 2026 | | 2026-08-07 | `18bee69f` | feat: Microbioreactor design 2026 Front Bioeng Biotechnol Mini Review (PMID 42516424) | | 2026-08-08 | `1614ccf9` | fix: v11 - forwarding per skill template (Liu 2026) | | 2026-08-08 | `a7cfb8a4` | fix: final - per Research SOP strict + clean internal traces (Liu 2026) | | 2026-08-08 | `d1e8c6dd` | fix: v5 - per Research SOP + page 946 benchmark (Liu 2026) | | 2026-08-08 | `b7882b81` | fix: v4 - add forward message (Liu 2026) | | 2026-08-08 | `84e93402` | fix: v3 - Fig 3 restored from page 6, audit table removed (Liu 2026) | | 2026-08-08 | `a69ad9c4` | literature: liu 2026 NBME shape-conformal organoid | | 2026-08-08 | `1c05eee7` | literature: miao 2025 cell organoid vascularization v2 | | 2026-08-08 | `a0810433` | 精读: Sharma K 2026 Cell Stem Cell 视网膜类器官血管化RGC存活与功能成熟 | | 2026-07-29 | `2341383e` | fix(hook4): 湖北行去掉 'Robin 8 月出差高发地' 残留 (Robin 真实出差意图) | | 2026-07-29 | `aa8fd2bc` | fix(hook4): 改标题 '下次出差' → '按 xlsx 缺口', Robin 后续自规划出差路径 | | 2026-07-29 | `4b237a82` | feat(hook): 4 个经销商管理 Hook 升级 | | 2026-07-29 | `b9da34dc` | fix(literature): Organoids 2026 综述 - 按 literature-deep-read-review SOP 重写 | | 2026-07-29 | `0cd44fa0` | feat(literature): 精读 Organoids for disease modeling and treatment 2026 综述 | | 2026-07-28 | `642e3dc6` | feat(agent): 新增代理商技术同事董慧群档案 (推 CelVivo 产品) | | 2026-07-28 | `2718e46d` | feat(literature): Parate 2020 SCRT — PEMF 增强 MSC 旁分泌功能促软骨再生 | | 2026-07-28 | `032de92f` | feat: 精读 Lee 2025 Front Vet Sci 犬脂肪源 MSC 3D 球体 | The **2026-08-08 cluster** is the literature flywheel-sync output (Liu 2026, Miao 2025 v2, Sharma 2026) — already indexed on [`/sources/literature.md`](/sources/literature.md). The **2026-08-07 / 2026-08-08 micro-revisions** on Liu 2026 (`a69ad9c4` → `1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran on the same paper. ## openwiki-wiki — working-tree status (2026-08-08) - **Branch:** `main` - **HEAD:** `c94940c7d24bdf77680822a86c81355acff93ebf` (the `feat: add Microbioreactor 2026 v4` update commit for the literature index) - **Working-tree state:** 17 staged-but-not-yet-committed file changes (this OpenWiki run's own edits, plus 3 new literature deep-read synthesis pages from the 2026-08-08 flywheel-sync: `sources/literature-liu-2026-nbme-shape-conformal-organoid-deepread.md`, `sources/literature-miao-2025-cell-vascularization-v2-deepread.md`, `sources/literature-sharma-2026-cell-stem-cell-vascularized-retinal-organoid-rgc-deepread.md`). - **Auth:** local path only — no remote, no credentials. ### Recent commits (latest first) | Date | Hash | Note | | --- | --- | --- | | 2026-08-08 | `c94940c7` | feat: add Microbioreactor 2026 v4 (PMID 42516424, ID 1696) | | 2026-08-08 | `7f65024` | feat: add Microbioreactor 2026 v3 (PMID 42516424) | | 2026-08-08 | `ea4f14a` | feat: add Microbioreactor 2026 v2 (PMID 42516424) | | 2026-08-08 | `a193e46` | feat: add Microbioreactor 2026 (PMID 42516424) deep-read entry | | 2026-08-08 | `bf90a91` | fix: liu 2026 wiki link to main path | | 2026-08-08 | `cf1dbe0` | fix: liu 2026 final link | | 2026-08-08 | `26efd2f` | fix: liu 2026 v5 link | | 2026-08-08 | `e18993a` | fix: liu 2026 v4 link | | 2026-08-08 | `b206bd9` | fix: liu 2026 v3 link | | 2026-08-08 | `c26dbdf` | fix: liu 2026 wiki link to v2 | | 2026-08-08 | `703c3d4` | literature: liu 2026 NBME shape-conformal organoid | | 2026-08-08 | `1b78735` | literature: miao 2025 cell v2 | | 2026-08-08 | `5adc406` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-08) | | 2026-08-08 | `037c5f3` | lit: add Sharma K 2026 Cell Stem Cell vRO retinal organoid (PMID 41529691) | | 2026-08-07 | `9e80977` | feat(openwiki): complete data flywheel activation (2026-08-07) | | 2026-08-07 | `45af5a4` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-07) | | 2026-08-07 | `bcd4a4f` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-07) | | 2026-08-07 | `0bbef0f` | feat(openwiki v0.3.1 --update): generate themes 4-5 + index.md + themes/ + sources/ index (2026-08-07) | | 2026-08-07 | `285c53b` | feat(openwiki v0.3.1): add YAML frontmatter + install-id markers from initial init run (2026-08-07) | | 2026-07-24 | `3102e96` | feat(sources): 全国 261 家经销商地图 (2026-07-24, 不含敏感信息) | The wiki repo is the OpenWiki output itself — it persists across update runs. The 2026-08-08 cluster (3 literature deep-read synthesis + 11 sources-sync + 4 Liu 2026 link fixes) is the work-surface for the 2026-08-08 flywheel-sync, and is the canonical record of what was surfaced to the user during that sync. ## Vault navigation index The vault uses a numbered top-level layout. Scripts, caches, and `temp*` working folders are excluded from this index. | Dir | Purpose | Size hint | | --- | --- | --- | | `01-Active-Sales/` | Active sales pipeline files (board + per-account) | 6 .md | | `02-Active-Deals/` | Deal-level active docs | 1 .md | | `02-Clients/`, `02-Contacts/` | Client & contact records | sparse | | `03-Product/` | Product briefs (e.g. 3Brain-Maxwell comparison) | 1 .md | | `03-Resources/Agents/` | Distributor / agent profiles | a handful | | `03-Resources/End-Customers/` | End-customer dossiers (3Brain MEA accounts, etc.) | 11+ .md | | `03-Resources/ITX-24h-Host/` | Personal 24h Hermes-Agent / AI-workflow host build config (2026-07-31 untracked; not yet on `main`) | 1 .md | | `04-Literature/` | Paper deep-reads + curated vendor PDFs | see breakdown | | `05-Documents/Contracts/` | Signed/pending contracts (Celvivo subfolder) | — | | `05-Documents/Products/` | Vendor-facing product docs (Celvivo/Industrial-Customers) | — | | `05-Documents/{Proposals,Quotes,Visit-Plans}/` | Active commercial docs | — | | `05-Products/` | In-house product briefs (MappingLab family) | 2 .md | | `06-Sales/Competitors/` | Competitor tracking | — | | `06-Sales/Configurations/` | Product configurations | — | | `06-Sales/Content/{FAQ,Pain-Points,PPT-Scripts,Success-Stories,Training-Materials,推文模板}/` | Sales content library | — | | `06-Sales/{Price-List,Product-Mapping,Recommendation-Engine}/` | Sales tooling | — | | `99-Templates/` | Reusable Obsidian templates | 14 .md | | `memory/` | Daily reports, weekly digests, `.dreams`, archive | 147 .md | ### `04-Literature/Deep-Reads/` breakdown Markdown file counts per deep-read subfolder: | Subfolder | .md count | | --- | --- | | `Organoid/` | 659 | | `Celvivo/` | 142 | | `3Brain/` | 136 | | `Cellink/` | 129 | | `Organoid-List/` | 51 | | `Product-Reports/` | 38 | | `Brain/` | 11 | | `Brain-Tumor/` | 9 | | `Cancer/` | 6 | | `Liver/` | 6 | | `Other/` | 6 | | `RegenMed/` | 1 | | `3Brain MEA/` | 3 | | `Cardiac/` | 2 | | `Kidney/` | 2 | | `Retinal/` | 1 | | `Microbioreactor/` | 1 (new as of 2026-08-07 — Rosero 2026 Front Bioeng Biotechnol) | | `Cells/` | 1 (new as of 2026-08-08 — Fernandez Vallone 2026 Cells THSDC) | Total ≈ 1,204 deep-read notes (+2 from the 2026-08-07 / 2026-08-08 cluster: Microbioreactor 2026 + Cells 2026 Fernandez Vallone). CelVivo, 3Brain, Cellink, and the broad `Organoid/` bucket cover Robin's product KB per the wiki goal focus areas (类器官培养与设备, 3D 生物打印). ## Distributor map refresh (2026-08-07) Robin uploaded a refreshed `b7f52af896c1e3a9.xlsx` on 2026-08-07 11:11, producing **8 new `*2026-0807.md` regional files** + a new `全国经销商地图-2026-0807.md` index + a new **product-association index** (`_known_associations.md`) + a new `_meta.json` reflecting the 259-dealer tally. The 2026-07-24 baseline (`*2026-0724.md` × 7 + index) remains in the repo but is now stale. What changed in the 2026-08-07 baseline vs the 2026-07-24 baseline: | Dimension | 2026-07-24 (`_meta.json`) | 2026-08-07 (`全国经销商地图-2026-0807.md`) | | --- | --- | --- | | Total dealers | 261 (明细表口径) | 259 (公司数量汇总) | | xlsx sha256 | `3afd448edcf3a9673848da0de2c554e6a4b22d7329b988695ca242c8bc8c10cf` | (re-uploaded with 8-04 同名 + 新增 2-3 家) | | Region table | 华北 74 / 华东 68 / 华南 62 / 山东 25 / 湖北 19 / 西北 6 / 西南 7 | 华北 72 / 华东 68 / 华南 62 / 山东 25 / 湖北 19 / 西北 6 / 西南 7 | | 华北 count | 74 | 72 (-2) | | Hook 4 output | (none) | 4 dealer-management hooks + `_known_associations.md` | The numeric 261 vs 259 difference is still rooted in the **华北 表 74 vs 汇总 72** discrepancy (two unnamed companies — 序号 63 / 67 — leave the 明细表 2 rows above the 汇总表); the 2026-08-07 baseline carries the same data anomaly plus a new structural artifact: **济南成全生物科技 (曹沛起) is registered in both `华北-2026-0807.md` and `山东-2026-0807.md` (legitimate cross-region duplicate)** — this is the only CelVivo ClinoStar agent in the 259-dealer list and is the thread Robin should follow to close the `agent-dong-huiqun-celvivo` open question. ### `_known_associations.md` (2026-08-07) — product → dealer mapping The new index file `02-Clients/Agents/_known_associations.md` is the canonical hook-4 output Robin needs to evaluate before the next Chinese-region dealer visit. Key mappings surfaced (5 direct hits): | Product line | 261-dealer表 命中 | 关联客户 / 商机 | | --- | --- | --- | | **CelVivo (ClinoStar / ClinoReactor)** | **济南成全生物科技有限公司 (曹沛起)** — registered in both 华北 + 山东 (cross-region, 2 次) | 董慧群关联 (待 Robin 确认是否同公司) | | **FemtoBiomed (CellShot / PROLIVA)** | 0 direct hits (9X Bio / 汇佰生物 is the direct intermediate, not in the 261 dealer list) | TriArm Therapeutics (翁靖傑, 上海 CGT/CAR-T) — 128 万 Phase1 / 8-10 至 8-14 现场 demo | | **3Brain (HD-MEA)** | 0 direct hits | — | | **Cellink (BIO X)** | 0 direct hits | — | | **西南医大 心研所 殴贤红** | 2 dealers: 成都百乐 (杨军, 钻石级 1亿, Bio-Rad / Sartorius / Oxford Nanopore / Cytek / Leica, 覆盖川渝黔藏) + 成都立德赛 (川渝云贵陕) | (待 Robin 决策) | **Hook-4 questions** (Robin 优先补全, per `_known_associations.md`): 1. 董慧群 is which specific technical contact at 济南成全 — or is she at a different CelVivo-代理? 2. 西南医大 殴贤红 → 成都百乐 vs 成都立德赛 — which dealer first? 3. 邓昊伦 (02-Contacts/) 蛇类神经方向 → 3Brain HD-MEA 拜访? 4. 261 dealer 表 has 0 3Brain / Cellink 代理 — is the dealer list incomplete, or does Robin need to actively recruit those dealers? Log these as a new commitment on `/commitments.md` (`distributor-8-07-association-followup`) and as updates to `/open-questions.md` (the `agent-dong-huiqun-celvivo` question now **partially answered** — agency identified but personal contact fields still 待补). ## Notable entities surfaced by the vault (structural hints only) - **CelVivo industrial customers program** — a dedicated subfolder under `05-Documents/Products/Celvivo/Industrial-Customers/` holds `CelVivo_中国工业 客户开发研究报告` (v1 + v2), `客户管线定位_1页图`, and `工业客户开发手册-v3`. This is a self-contained CelVivo China commercial effort. - **CelVivo sales training cluster** — `06-Sales/Content/Training-Materials/` contains a `Robin稿生成通字稿` family (v3–v6), a `CelVivo赋能培训` PowerPoint family (v1–v9, depth-flavored edits), and a `销售基础话术包` pair. Versions progress from 基础 → 5大管线 → 深度版 → 终稿修正 → 销量仅看. - **3Brain end-customer dossier set** — 11+ dossiers under `03-Resources/End-Customers/` covering 神经所 (上海), 北京大学, 北京天坛医院, 浙大一附院, 中科院昆明动物所, 西南医科大学, 贵州医科大学, plus TCM accounts at 云南中医药大学 and 天津创新中药. - **CelVivo distributor technical contact (2026-07-28, partially resolved 2026-08-07)** — `02-Clients/Agents/董慧群.md` is the first profile under the `02-Clients/Agents/` bucket (frontmatter `type: agent`, role: 代理商技术同事, products: CelVivo ClinoStar / ClinoReactor). The 2026-08-07 `_known_associations.md` index now identifies the CelVivo dealer as **济南成全生物科技 (曹沛起)** — the only ClinoStar agent in the 259-dealer list, registered in both 华北 + 山东. Robin still needs to confirm: (a) is 董慧群 the same agency? (b) phone / WeChat / served end-customers / opportunities. The agency-side gap is now closed. - **ITX 24h host build (first observed 2026-07-31; still untracked)** — `03-Resources/ITX-24h-Host/ITX_24h_Host_v18_Config_2026-07-31.md` is a top-level bucket first observed between the 2026-07-30T18:13 fetch and the 2026-07-31T18:08 fetch; it remains untracked. Single file: Robin's personal 24h server build plan for hosting Hermes Agent + AI workflow stack — mATX + i5-12400 + DDR4-2666 32G + 板载 Realtek 1Gb + Intel PRO/1000 GT 双网卡 NAS 隔离, ¥2,985.82, 10/11 parts arrived, planned hostnames/roles: 192.168.31.100 (主力机 SSH) vs 10.10.10.254 (RAGFlow / NAS RAGFlow API). Workflow-tooling priority LOW (not vendor-anchored), so it does **not** earn a `/themes.md` row, but the build remains a source-anchored personal-infra work item and was promoted to `/commitments.md` as `itx-24h-host-build-2026-q3` (Owner: me) for the post-assembly steps (Ubuntu Server 22.04 install + 双网卡静态 IP + Hermes Agent install + 24h soak test). - **Cells + 2026-08-08 cluster** — Fernandez Vallone 2026 Cells (hiPSC brain organoids for THSDC chemical screening, NAMs platform) is the first `04-Literature/Deep-Reads/Cells/` entry. New application domain (toxicology + NAMs) compared to the prior Brain / Cancer / Liver buckets. CelVivo + 3Brain application scenarios called out in tags. - **Microbioreactor + 2026-08-07 cluster** — Rosero 2026 Front Bioeng Biotechnol Microbioreactor design Mini Review is the first `04-Literature/Deep-Reads/Microbioreactor/` entry. Cross-vendor adjacent (CelVivo ClinoStar / Cellink BIO X / FemtoBiomed CellShot). Landed in NocoDB `Robin_Picked_Papers` (PMID 42516424, Wiki.js ID 1696). - **Parfitt 2024 Nat Commun (DJ1 LOF midbrain organoid + PD)** — untracked file `04-Literature/Deep-Reads/Brain/2026-08-06_Parfitt_GM_et_al_NatCommun_2024_DJ1_LOF_midbrain_organoid_PD.md` (15,972 bytes, mtime 2026-08-06). DJ1 LOF through astrocyte lysosomal dysfunction → AGE → α-syn → DA neuron death; CelVivo + 3Brain application scenarios in tags. Not yet on `main`; pending Robin commit. - **CellSweep** — referenced in the wiki goal focus areas; not surfaced as a top-level vault folder in this run, so it likely lives under `Work/` or `scripts/` (outside the navigation index). ## Synthesis policy for this source - **This run (2026-08-08):** 1 new entry surfaced to `/commitments.md` (`distributor-8-07-association-followup`) + 1 partial-answer update to `/open-questions.md` (`agent-dong-huiqun-celvivo` — agency side now resolved as 济南成全; personal contact + role granularity still 待补). The `/themes/05-robin-research.md` truth-of-vault snapshot moves to the new HEAD `d7df3830` and the 2026-08-07 distributor map baseline. The `/sources/distributors-china-2026.md` page absorbs the 259-dealer 8-07 baseline (replacing the 261-dealer 7-24 baseline numbers) and the new `_known_associations.md` index. - The vault is a knowledge base, not a live signal stream; durable per-document synthesis (paper deep reads, sales scripts, customer files) requires reading individual files, which is delegated to the Hermes skill and RAGFlow. - Future runs should keep this page structural. Promote a row to a canonical theme only when the connector observes a recurring workflow (e.g. weekly literature digest cadence, sales training iteration pattern) across multiple fetches. ## Next update Run `openwiki_ingest_connector connectorId=git-repo` (or `openwiki personal --update`) to refresh. Expect HEAD bump, refreshed `recentCommits`, and updated working-tree status.