---
type: "Reference"
title: "Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)"
description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `391e4713`, 2026-09-04, **vault HEAD unchanged** at the 2026-08-31T18:09Z fetch level for the 4th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster, **0 new vault commits** in the 2026-09-03T18:09Z → 2026-09-04T18:12Z 24-hour window, **4 calendar days of vault silence** since the 2026-08-31 cluster (Yan + Stewart + Nguyen + Aiello + Miao all `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 23 → **24-day carry-forward** (21 → **22 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 18 → **19-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + **2026-09-04** fetches), `deepread_40240593/` 11 → **12-day carry-forward** (mtime unchanged across **11 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `88635edc7a35488280cf4cbf87750f6ac5e517ed`, 2026-09-04, **2 new automated wiki commits in the 2026-09-03T18:09Z → 2026-09-04T18:12Z 24-hour window: `ab49afd` chore: daily update 2026-09-04 (per `git show --stat ab49afd` the commit touched 14 files including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md`), then `88635ed` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-04 — the **twenty-first** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + `bd30339` 2026-08-20 + `f6c2576` 2026-08-21 + `43d4548` 2026-08-22 + `8f8f767` 2026-08-23 + `127c2dc` 2026-08-24 + `1003b92` 2026-08-25 + `ebb95c0` 2026-08-26 + `502281f` 2026-08-27 + `c992dd6` 2026-08-28 + `37d1ba6` 2026-08-29 + `d56da3a` 2026-08-30 + `9582dea` 2026-08-31 + `0890fdb` 2026-09-01 + `cedbb7f` 2026-09-02 + `58168e7` 2026-09-03 + now `88635ed` 2026-09-04) committed `sources/{nocodb,ragflow,seafile,wikijs}.md` re-touched by the sources-sync; the very next synthesis edits from the HN-1 2026-09-04T18:00Z + web-search-1 2026-09-04 (skipped) + this git-repo-1 2026-09-04T18:12Z run re-touch the same files leaving the dirty count at **10 per the manifest `changedFiles` list** — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` — **1 fewer than the 2026-09-03T18:09Z fetch's 11-dirty-file baseline** because the `ab49afd` daily update cycle on 2026-09-04 did not re-touch `themes/05-robin-research.md` + `sources/git-repo.md` + `sources/index.md` + `sources/README.md` + `themes/index.md` (those files had been touched by the prior `7aba9cb` 2026-09-03 daily update and not picked up by the CLI metadata cycle on 2026-09-04); the remaining 10 dirty files include the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) re-touched by the `88635ed` sources-sync after the `ab49afd` daily update had cleared them + the CLI metadata cycle on `themes.md` + `.last-update.json` + `index.md` + `quickstart.md` + `sources/hackernews.md`)**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
tags: [sources, git-repo, vault, wiki, manifest, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, vault-silent-4d, twenty-first-sources-sync, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-twelve-silent-fetches]
timestamp: 2026-09-04T18:12:00Z
---

# Git repo — evidence index

This page is the **compact source-evidence index** for the local git-repo connector, which ingests Robin's Obsidian vault (`/home/ldw/workspace`) and the local OpenWiki wiki (`/home/ldw/.openwiki/wiki`). Each ingestion run writes a JSON manifest under `~/.openwiki/connectors/git-repo/raw/`.

## Source config

- Connector config path: `~/.openwiki/connectors/git-repo/config.json`
- Two configured local repos:
  - `obsidian-vault` at `/home/ldw/workspace` (branch: `main`, HEAD `391e4713`, 2026-08-31 — 35 commits since 2026-08-03 fetch)
  - `openwiki-wiki` at `/home/ldw/.openwiki/wiki` (branch: `main`, HEAD `88635ed`, 2026-09-04)
- Authentication: local path only — no remote, no credentials

## Latest manifest

- `~/.openwiki/connectors/git-repo/raw/2026-09-04T18-12-59-869Z/manifest.json` (generated 2026-09-04T18:12:59Z)
- Vault HEAD: `391e47131679ce9edf0f525236e78ebb13e0d232` (unchanged since 2026-08-31T13:42 +0800)
- Wiki HEAD: `88635edc7a35488280cf4cbf87750f6ac5e517ed` (bumped from `58168e7` at 2026-09-04)
- **0 new vault commits** in the 24-hour window (vault silent for the 4th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster)
- **2 new automated wiki commits** in the 24-hour window (`ab49afd` daily update 2026-09-04 + `88635ed` sources-sync 2026-09-04 — the **twenty-first** consecutive sources-sync)
- 10 uncommitted wiki files in working tree per the manifest `changedFiles` list (down 1 from the 11-dirty-file baseline at the 2026-09-03T18:09Z fetch)

## Carry-forward untracked directories

| Directory / file | Carry-forward | Fetches silent | Status |
| --- | ---: | ---: | --- |
| `Review/zhou2023_computer_vision_microfluidics.md` | **24-day** | 22 | stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch) |
| `celvivo_commercial/` | **19-day** | 19 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
| `templates/` | **19-day** | 19 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
| `deepread_40240593/` | **12-day** | 11 | working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 11 consecutive silent fetches since creation) |

## Recent commits — vault (last 5)

The most recent vault commits remain the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR burst (no new commits in the 24-hour window):

1. `391e4713` 2026-08-31 — deep-read: Yan 2024 Cell Reports TMEM106B SARS-CoV-2 ACE2-independent brain organoids (CelVivo)
2. `4fca0123` 2026-08-31 — deep-read: Miao 2025 Cell vascularized lung/gut organoids (CelVivo ClinoReactor)
3. `fad7e21e` 2026-08-31 — deep-read: Nguyen 2024 npj Viruses JEV G4 2022 Australia brain organoids (CelVivo)
4. `030f31ed` 2026-08-31 — deep-read: Aiello 2025 EMBO reports reproducible brain organoids (CelVivo ClinoReactor)
5. `eb24ab72` 2026-08-31 — deep-read: Stewart 2023 Front Microbiol BA.5/XBB neurotropic brain organoids (CelVivo)

## Recent commits — wiki (last 5)

1. `88635ed` 2026-09-04 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-04, **twenty-first** consecutive sources-sync)
2. `ab49afd` 2026-09-04 — chore: daily update 2026-09-04 (14 files modified per `git show --stat ab49afd`)
3. `58168e7` 2026-09-03 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-03, twentieth consecutive sources-sync)
4. `7aba9cb` 2026-09-03 — chore: daily update 2026-09-03 (16 files modified per `git show --stat 7aba9cb`)
5. `cedbb7f` 2026-09-02 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-02, nineteenth consecutive sources-sync)

## Synthesis-policy — this run

- Vault delta: empty (no new commits, no new mtime changes).
- Wiki delta: automated maintenance only.
- Synthesis-layer impact: **none**. The themes / commitments / open-questions / personal-logistics pages are independent of the wiki-side automated maintenance commits.
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-04T18:12Z)" paragraph on `/quickstart.md` for the full delta list.

## Previous run

- 2026-09-03T18:09Z — vault HEAD unchanged at `391e4713`, 2 new wiki commits (`7aba9cb` + `58168e7`), 11-dirty-file baseline, the 4 carry-forward untracked directories bumped to 23/18/18/11-day carry-forward. See [`/themes/05-robin-research.md`](/themes/05-robin-research.md) + `/quickstart.md` for the full synthesis of that run.