--- type: "Reference" title: "Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)" description: > Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. **Latest fetch (2026-09-17T18:22Z — 33rd git-repo-1 fetch since 2026-08-07): vault HEAD unchanged at `09bec367` for the 6th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption; wiki HEAD bumped `ac46732` → `307e038` via 2 new automated wiki commits (`3d95e56` daily update 2026-09-17 + `307e038` sources-sync 2026-09-17 — the **thirty-fourth** consecutive sources-sync); 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800 — persists uncommitted for 4 calendar days at this fetch); 10-dirty-file baseline (down from 11-dirty at the 2026-09-16 fetch — `index.md` + `sources/README.md` cleared by `3d95e56` daily update, `sources/literature.md` newly dirty from this run); carry-forward bump 35/30/30/23 → 36/31/31/24-day.** Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `09bec367`, 2026-09-11, vault HEAD unchanged at `09bec367` for the 6th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption; the MOC working-tree modification persists uncommitted); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `307e038`, 2026-09-17, bumped from `ac46732` via 2 automated commits in the 24-hour window — `3d95e56` daily update + `307e038` sources-sync thirty-fourth). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here. tags: [sources, git-repo, vault, wiki, manifest, 2026-09-17, 2026-09-16, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, vault-silence-broken, vault-resumed-after-11d, twenty-seventh-sources-sync, twenty-eighth-sources-sync, twenty-ninth-sources-sync, thirtieth-sources-sync, thirty-first-sources-sync, thirty-second-sources-sync, thirty-third-sources-sync, thirty-fourth-sources-sync, thirty-second-git-repo-fetch, thirty-third-git-repo-fetch, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, wiki-2-new-commits, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-twenty-three-silent-fetches, deepread-40240593-twenty-four-silent-fetches, vault-silent-5d, vault-silent-6d, vault-silent-7d, vault-silent-8d, moc-organoid-3d-culture-uncommitted-edit-4d, vault-working-tree-moc-modification-2026-09-13-persists, thirty-third-git-repo-fetch-33rd, robin-8-07-added-untracked-regional-agent-files] timestamp: 2026-09-17T18:22:00Z --- # Git repo — evidence index This page is the **compact source-evidence index** for the local git-repo connector, which ingests Robin's Obsidian vault (`/home/ldw/workspace`) and the local OpenWiki wiki (`/home/ldw/.openwiki/wiki`). Each ingestion run writes a JSON manifest under `~/.openwiki/connectors/git-repo/raw/`. ## Source config - Connector config path: `~/.openwiki/connectors/git-repo/config.json` - Two configured local repos: - `obsidian-vault` at `/home/ldw/workspace` (branch: `main`, HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff`, 2026-09-11 — **37 commits since 2026-08-03 fetch**, +2 since 2026-09-09T18:11Z fetch; vault HEAD unchanged for the 6th consecutive git-repo-1 fetch since the 2026-09-11T18:14Z resumption) - `openwiki-wiki` at `/home/ldw/.openwiki/wiki` (branch: `main`, HEAD `307e03882c08f591ac79b531975891f62dd94020`, 2026-09-17 — bumped from `ac46732ddf9bfe79ea480f1927450073bfd0d893` via 2 automated commits in the 24-hour window) - Authentication: local path only — no remote, no credentials ## Latest manifest - `~/.openwiki/connectors/git-repo/raw/2026-09-17T18-22-17-292Z/manifest.json` (generated 2026-09-17T18:22Z — **33rd git-repo-1 fetch since 2026-08-07**) - Vault HEAD: `09bec36702cdbd8ef1d2644919ca337248ae6bff` (**unchanged at `09bec367` for the 6th consecutive fetch** after the 2026-09-11T18:14Z bump from `391e4713`; **6 calendar days of vault silence** since the 2026-09-11 resumption) - Wiki HEAD: `307e03882c08f591ac79b531975891f62dd94020` (bumped from `ac46732` via 2 automated commits in the 24-hour window) - **0 new vault commits** in the 24-hour window + **1 working-tree modification** at `M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"` (mtime 2026-09-13 11:55:42 +0800; Robin actively editing MOC index file but has not yet committed — the modification now persists uncommitted for **4 calendar days** at this fetch) - **2 new automated wiki commits** in the 24-hour window (`3d95e56` daily update 2026-09-17 + `307e038` sources-sync 2026-09-17 — the **thirty-fourth** consecutive sources-sync) - **10 uncommitted wiki files** in working tree per the manifest `changedFiles` list (down from the 11-dirty baseline at the 2026-09-16T18:18Z fetch — `M .last-update.json` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/literature.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`; the `3d95e56` daily update cleared `index.md` + `sources/README.md` that were dirty at the 2026-09-16 fetch, while `sources/literature.md` was newly re-touched this run) - **Carry-forward untracked-file bumps**: `Review/zhou2023_computer_vision_microfluidics.md` 35 → **36-day** (33 → **34 fetches silent**), `celvivo_commercial/` + `templates/` 30 → **31-day**, `deepread_40240593/` 23 → **24-day** (mtime unchanged across **23 consecutive silent fetches** since creation) ## Carry-forward untracked directories | Directory / file | Carry-forward | Fetches silent | Status | | --- | ---: | ---: | --- | | `Review/zhou2023_computer_vision_microfluidics.md` | **36-day** | 34 | stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch) | | `celvivo_commercial/` | **31-day** | 31 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) | | `templates/` | **31-day** | 31 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) | | `deepread_40240593/` | **24-day** | 23 | working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 23 consecutive silent fetches since creation) | ## Robin 8-07 added — untracked regional agent files (context only) The 8 untracked regional agent files Robin added on 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") remain in the vault working tree as uncommitted artifacts, with no mtime change observed since the 2026-08-07 baseline: - `02-Clients/Agents/全国经销商地图-2026-0807.md` - `02-Clients/Agents/华东-2026-0807.md` - `02-Clients/Agents/华北-2026-0807.md` - `02-Clients/Agents/华南-2026-0807.md` - `02-Clients/Agents/山东-2026-0807.md` - `02-Clients/Agents/湖北-2026-0807.md` - `02-Clients/Agents/西北-2026-0807.md` - `02-Clients/Agents/西南-2026-0807.md` These files are documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md) (with privacy rules per [`/sources/agents.md`](/sources/agents.md)) — no fresh synthesis update needed at this fetch. ## Recent commits — vault (last 7) The 5 most recent vault commits are the new 2 (Tomas 2026 + Vijakumaran 2026) on top of the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR burst. **Vault HEAD bumped `391e4713` → `09bec367`** — vault silence streak BROKEN after 11 calendar days: 1. `09bec367` 2026-09-11 — `literature: 精读 NocoDB Id=3029 Air-liquid interface-centered oxygen engineering in human br (飞轮 v4 自动 sink)` (brain-organoid ALI oxygen engineering — first paper routed through the **v4 Flywheel auto-sink pipeline**; new file at `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md`) 2. `1fd63019` 2026-09-10 — `feat(literature): Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read` (Western University; new file at `04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md`) 3. `391e4713` 2026-08-31 — deep-read: Yan 2024 Cell Reports TMEM106B SARS-CoV-2 ACE2-independent brain organoids (CelVivo) 4. `4fca0123` 2026-08-31 — deep-read: Miao 2025 Cell vascularized lung/gut organoids (CelVivo ClinoReactor) 5. `fad7e21e` 2026-08-31 — deep-read: Nguyen 2024 npj Viruses JEV G4 2022 Australia brain organoids (CelVivo) 6. `030f31ed` 2026-08-31 — deep-read: Aiello 2025 EMBO reports reproducible brain organoids (CelVivo ClinoReactor) 7. `eb24ab72` 2026-08-31 — deep-read: Stewart 2023 Front Microbiol BA.5/XBB neurotropic brain organoids (CelVivo) ## Recent commits — wiki (last 6) 1. `307e038` 2026-09-17 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-17, **thirty-fourth** consecutive sources-sync) 2. `3d95e56` 2026-09-17 — chore: daily update 2026-09-17 (per `git show --stat 3d95e56` the commit re-touched `index.md` + `quickstart.md` + `themes.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes/05-robin-research.md` + `themes/index.md` + the `.last-update.json` metadata file — the standard daily-update cycle) 3. `ac46732` 2026-09-16 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-16, **thirty-third** consecutive sources-sync) 4. `73dae5e` 2026-09-16 — chore: daily update 2026-09-16 (per `git show --stat 73dae5e` the commit re-touched the same source-sync files) 5. `f5465f9` 2026-09-15 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-15, **thirty-second** consecutive sources-sync) 6. `f38cebf` 2026-09-15 — chore: daily update 2026-09-15 (per `git show --stat f38cebf` the commit re-touched the same source-sync files) 7. `09f47d6` 2026-09-14 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-14, **thirty-first** consecutive sources-sync) ## Synthesis-policy — this run (2026-09-17T18:22Z) - **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **6th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **6 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-16T18:18Z fetch recorded 5 calendar days; +1 calendar day from 2026-09-16 → 2026-09-17). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 4 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-16T18:18Z → 2026-09-17T18:22Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md). - **Wiki delta: automated maintenance only** (1 daily update + 1 sources-sync). The 2 new wiki commits in the 24-hour window are routine: `3d95e56` daily update 2026-09-17 + `307e038` sources-sync 2026-09-17 — the **thirty-fourth** consecutive sources-sync (continuing the count-data wipe pattern that started at the 2026-08-15 `2507925` commit). The wiki HEAD bump `ac46732` → `307e038` covers 1 calendar day. - **Dirty-file baseline change**: 11-dirty baseline (at 2026-09-16T18:18Z) → **10-dirty baseline** (at 2026-09-17T18:22Z). The `3d95e56` daily update cleared `index.md` + `sources/README.md` that were dirty at the prior fetch; `sources/literature.md` was newly re-touched this run (not previously in the 11-dirty list — likely a re-touch from the synthesis-side write path); the `307e038` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`). The 10-dirty-file list at 2026-09-17T18:22Z: `M .last-update.json` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/literature.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`. - **Carry-forward bump** to **36/31/31/24-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak, +1 day from the 2026-09-16 fetch's 35/30/30/23-day): `Review/zhou2023_computer_vision_microfluidics.md` 35 → **36-day** (33 → **34 fetches silent**), `celvivo_commercial/` + `templates/` 30 → **31-day** (30 → **31 fetches silent** each), `deepread_40240593/` 23 → **24-day** (22 → **23 consecutive silent fetches** since creation; mtime unchanged at 2026-08-24 16:31 +0800). - **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 4 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch. - **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-17T18:22Z)" paragraph + the description frontmatter mentions the 2026-09-17T18:22Z git-repo-1 fetch + the **33rd git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-6th-consecutive-fetch** event + the 2 new wiki commits (33rd/34th sources-sync sequence: `3d95e56` daily update + `307e038` sources-sync thirty-fourth) + the 36/31/31/24-day carry-forward bump + the 10-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 4 calendar days + the Robin 8-07 added untracked regional agent files - **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-17T18:22Z fetch; tags refreshed to add `2026-09-17`, `vault-silent-8d`, `thirty-fourth-sources-sync`, `thirty-third-git-repo-fetch`, `wiki-2-new-commits`, `moc-organoid-3d-culture-uncommitted-edit-4d`, `deepread-40240593-twenty-four-silent-fetches`, `robin-8-07-added-untracked-regional-agent-files`; timestamp refreshed to `2026-09-17T18:22:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 36/31/31/24-day; Recent-commits-wiki table refreshed (2 new commits at top); this Synthesis-policy section added; Previous-run section updated - **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-17T18:22Z fetch + the vault HEAD unchanged for the 6th consecutive fetch + the 2 new wiki commits (33rd/34th sources-sync sequence) + the 36/31/31/24-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted for 4 calendar days; 04-Literature/Deep-Reads/ breakdown table refreshed with the 36/31/31/24-day carry-forward bump - **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-17T18:22Z fetch + the vault HEAD unchanged at `09bec367` for the 6th consecutive fetch + the wiki HEAD `307e038` + the 36/31/31/24-day carry-forward bump + the **33rd git-repo-1 fetch** of the 2026-08-07 streak + the 10-dirty-file baseline - **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-17T18:22Z fetch + the **thirty-fourth** consecutive sources-sync + the 10-dirty-file baseline + the 36/31/31/24-day carry-forward bump - Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-17T18:22Z)" paragraph on `/quickstart.md` for the full delta list. ## Synthesis-policy — this run (2026-09-16T18:18Z) - **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **5th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **5 calendar days of vault silence** since the 2026-09-11 resumption. The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 3 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-13T18:08Z → 2026-09-16T18:18Z 72-hour window. The 8 untracked regional agent files from 2026-08-07 carry forward unchanged. - **Wiki delta: automated maintenance only** (3 daily updates + 3 sources-syncs). The 6 new wiki commits in the 72-hour window are routine: `667730f` daily update 2026-09-14 + `09f47d6` sources-sync 2026-09-14 thirty-first + `f38cebf` daily update 2026-09-15 + `f5465f9` sources-sync 2026-09-15 thirty-second + `73dae5e` daily update 2026-09-16 + `ac46732` sources-sync 2026-09-16 thirty-third. The wiki HEAD bump `5f33bd3` → `ac46732` covers 3 calendar days. - **Dirty-file baseline change**: 8-dirty baseline (at 2026-09-13T18:08Z) → **11-dirty baseline** (at 2026-09-16T18:18Z). The 3 daily-update cycles re-touched `index.md` + `quickstart.md` + `themes.md` (the 2026-09-13 daily update had cleared them); the 3 sources-syncs re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) each cycle. The 11-dirty-file list at 2026-09-16T18:18Z: `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/README.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`. - **Carry-forward bump** to **35/30/30/23-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak): `Review/zhou2023_computer_vision_microfluidics.md` 32 → **35-day** (33 fetches silent), `celvivo_commercial/` + `templates/` 27 → **30-day** (30 fetches silent each), `deepread_40240593/` 20 → **23-day** (22 consecutive silent fetches since creation; mtime unchanged at 2026-08-24 16:31 +0800). - **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 3 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch. - **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-16T18:18Z)" paragraph + the description frontmatter mentions the 2026-09-16T18:18Z git-repo-1 fetch + the **32nd git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-5th-consecutive-fetch** event + the 6 new wiki commits (31st/32nd/33rd sources-sync sequence) + the 35/30/30/23-day carry-forward bump + the 11-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 3 calendar days - **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-16T18:18Z fetch; tags refreshed to add `2026-09-16`, `2026-09-15`, `2026-09-14`, `vault-silent-5d`, `vault-silent-6d`, `vault-silent-7d`, `moc-organoid-3d-culture-uncommitted-edit-3d`, `vault-working-tree-moc-modification-2026-09-13-persists`, `thirty-first-sources-sync`, `thirty-second-sources-sync`, `thirty-third-sources-sync`, `thirty-second-git-repo-fetch`, `wiki-6-new-commits`, `deepread-40240593-twenty-two-silent-fetches`, `deepread-40240593-twenty-three-silent-fetches`; timestamp refreshed to `2026-09-16T18:18:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 35/30/30/23-day; Recent-commits-wiki table refreshed (6 new commits at top); this Synthesis-policy section added; Previous-run section updated - **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-16T18:18Z fetch + the vault HEAD unchanged for the 5th consecutive fetch + the 6 new wiki commits (31st/32nd/33rd sources-sync sequence) + the 35/30/30/23-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted; 04-Literature/Deep-Reads/ breakdown table refreshed with the 35/30/30/23-day carry-forward bump - **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-16T18:18Z fetch + the vault HEAD unchanged at `09bec367` for the 5th consecutive fetch + the wiki HEAD `ac46732` + the 35/30/30/23-day carry-forward bump + the **32nd git-repo-1 fetch** of the 2026-08-07 streak + the 11-dirty-file baseline - **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-16T18:18Z fetch + the **thirty-third** consecutive sources-sync + the 11-dirty-file baseline + the 35/30/30/23-day carry-forward bump - Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-16T18:18Z)" paragraph on `/quickstart.md` for the full delta list. ## Synthesis-policy — this run (2026-09-13T18:08Z) - **Vault delta: 0 new vault commits + 1 working-tree modification** — vault HEAD unchanged at `09bec367` (the 2nd consecutive vault-silent fetch after the Tomas 2026 + Vijakumaran 2026 resumption). The only vault change is the MOC-file edit: `M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"` (mtime 2026-09-13 11:55:42 +0800) — Robin is actively editing the MOC index file but has not yet committed. This is the first vault working-tree modification since the 2026-08-24/25 burst (the 2026-08-31 cluster was an in-vault commit, not an uncommitted edit), and it routes through the MOC-folder rather than the `deepread_/` working-folder pipeline that the 2026-08-24/25 burst had hypothesized. The `deepread_40240593/` working folder is still silent (mtime unchanged across 19 consecutive silent fetches since the 2026-08-24 16:31 +0800 baseline). - **Wiki delta: automated maintenance only** (CLI metadata cycle + sources-sync + daily update + sources-sync). The 4 new wiki commits in the 48-hour window are routine: 2 daily updates (`999a37d` + `0447186`) + 2 sources-syncs (`7cfb801` twenty-ninth + `5f33bd3` thirtieth). The wiki HEAD bump `55d930f` → `5f33bd3` covers 2 calendar days. - **Dirty-file baseline change**: 10-dirty baseline (at 2026-09-11T18:14Z) → **8-dirty baseline** (at 2026-09-13T18:08Z). Different shape: `index.md` + `quickstart.md` + `sources/git-repo.md` + `themes.md` were cleared by the `999a37d` daily update; new `M sources/openwiki-version-drift.md` appeared. The 8-dirty-file list at 2026-09-13T18:08Z: `M .last-update.json` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/openwiki-version-drift.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md`. - **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes that alter the synthesis-layer shape) and the wiki delta is automated maintenance only. The MOC-file working-tree edit is uncommitted; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch. - **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-13T18:08Z)" paragraph + the description frontmatter mentions the 2026-09-13T18:08Z git-repo-1 fetch + the vault-unchanged state + the 4 new wiki commits (28th/29th/30th sources-sync sequence) + the 32/27/27/20-day carry-forward bump + the 8-dirty-file baseline + the MOC-file working-tree modification - **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-13T18:08Z fetch; tags refreshed to add `2026-09-13`, `2026-09-12`, `twenty-ninth-sources-sync`, `thirtieth-sources-sync`, `thirtieth-git-repo-fetch`, `thirty-first-git-repo-fetch`, `deepread-40240593-twenty-silent-fetches`, `moc-organoid-3d-culture-uncommitted-edits`, `vault-working-tree-moc-modification-2026-09-13`; timestamp refreshed to `2026-09-13T18:08:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 32/27/27/20-day; Recent-commits-wiki table refreshed (4 new commits at top); this Synthesis-policy section added; Previous-run section updated - **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-13T18:08Z fetch + the vault HEAD unchanged + the 4 new wiki commits + the 32/27/27/20-day carry-forward bump + the MOC-file working-tree modification; 04-Literature/Deep-Reads/ breakdown table refreshed with the 32/27/27/20-day carry-forward bump - **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-13T18:08Z fetch + the vault HEAD unchanged + the 4 new wiki commits (28th/29th/30th sources-sync) + the 32/27/27/20-day carry-forward bump + the **31st git-repo-1 fetch** of the 2026-08-07 streak + the 8-dirty-file baseline - **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-13T18:08Z fetch + the **thirtieth** consecutive sources-sync + the 8-dirty-file baseline + the 32/27/27/20-day carry-forward bump - Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-13T18:08Z)" paragraph on `/quickstart.md` for the full delta list. ## Synthesis-policy — this run (2026-09-11T18:14Z) - **Vault delta: 2 new vault commits** (Tomas 2026 + Vijakumaran 2026) — vault silence streak BROKEN after 11 calendar days since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster. Both new papers route through the standard `04-Literature/Deep-Reads//.md` pattern. The **v4 Flywheel auto-sink pipeline** (visible in the `09bec367` commit message "飞轮 v4 自动 sink") is the first observation of Robin's LDR pipeline v4 in action — the v3 SOP was 9 steps (per the 2026-08-25 `9aa2af4c` vendor-mapping retrofit); the v4 auto-sink iterates the SOP with an automated commit/sink step. - **Wiki delta: automated maintenance only** (CLI metadata cycle + sources-sync + daily update + sources-sync). The 4 new wiki commits are routine: 2 daily updates + 2 sources-syncs (the standard cadence). - **Synthesis-layer impact**: - **Vault silence streak BROKEN** — flips the narrative from "11 calendar days of vault silence" to "vault resumed after 11-day pause" + "2 new vault commits since the 2026-08-31 cluster" + "v4 Flywheel auto-sink pipeline first observation" - **`/sources/literature.md`** gets a new `2026-09-11 (Vijakumaran 2026 brain-organoid ALI oxygen engineering — first v4 Flywheel auto-sink entry)` row; the Tomas 2026 entry was added in a prior run (2026-09-10 row already present) - **`/themes.md`** `class-organoid-3d-bioprinting` row gets Last-seen refresh `2026-08-25` → `2026-09-11` + Evidence count bump `37+` → `39+` (Tomas 2026 + Vijakumaran 2026 = 2 new entries) - **`/themes/05-robin-research.md`** vault-snapshot metadata refreshed + 04-Literature/Deep-Reads/ breakdown table updated with Vijakumaran 2026 row + the 4 carry-forward untracked directories bumped to 30/25/25/18-day carry-forward - **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-11T18:14Z)" paragraph + the description frontmatter mentions the 2026-09-11T18:14Z git-repo-1 fetch + the vault silence streak broken + the 2 new vault commits + the 4 new wiki commits + the 30/25/25/18-day carry-forward bump - **`/sources/index.md`** + **`/sources/README.md`** get their git-repo.md description entries refreshed - Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-11T18:14Z)" paragraph on `/quickstart.md` for the full delta list. ## Previous run - 2026-09-16T18:18Z — vault HEAD unchanged at `09bec367` for the 5th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 3 calendar days at this fetch), 6 new wiki commits (`667730f` daily update 2026-09-14 + `09f47d6` sources-sync 2026-09-14 — the **thirty-first** consecutive sources-sync + `f38cebf` daily update 2026-09-15 + `f5465f9` sources-sync 2026-09-15 — the **thirty-second** consecutive sources-sync + `73dae5e` daily update 2026-09-16 + `ac46732` sources-sync 2026-09-16 — the **thirty-third** consecutive sources-sync), 11-dirty-file baseline (up from 8-dirty at the 2026-09-13 fetch), carry-forward bump to 35/30/30/23-day. See the "Synthesis-policy — this run (2026-09-16T18:18Z)" section above + the "Latest update — git-repo-1 (2026-09-16T18:18Z)" paragraph on `/quickstart.md` for the full synthesis of that run. - 2026-09-13T18:08Z — vault HEAD unchanged at `09bec367` for the 2nd consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800), 4 new wiki commits (`7cfb801` sources-sync 2026-09-12 — the **twenty-ninth** consecutive sources-sync + `999a37d` daily update 2026-09-12 + `0447186` daily update 2026-09-13 + `5f33bd3` sources-sync 2026-09-13 — the **thirtieth** consecutive sources-sync), 8-dirty-file baseline (down from 10-dirty at the 2026-09-11 fetch), carry-forward bump to 32/27/27/20-day. See the "Synthesis-policy — this run (2026-09-13T18:08Z)" section above + the "Latest update — git-repo-1 (2026-09-13T18:08Z)" paragraph on `/quickstart.md` for the full synthesis of that run. - 2026-09-11T18:14Z — vault HEAD bumped `391e4713` → `09bec367` (**vault silence streak BROKEN** after 11 calendar days), 2 new vault commits (`1fd63019` Tomas 2026 HGSC + `09bec367` Vijakumaran 2026 brain-organoid ALI oxygen engineering — first v4 Flywheel auto-sink entry), 4 new wiki commits (`299eeab` sources-sync 2026-09-10 twenty-seventh + `1e6a7cb` daily update 2026-09-10 + `2bf104e` daily update 2026-09-11 + `55d930f` sources-sync 2026-09-11 twenty-eighth), 10-dirty-file baseline, 4 carry-forward untracked directories bumped to 30/25/25/18-day, 1 new untracked `NO` file. See the "Synthesis-policy — this run (2026-09-11T18:14Z)" section above + the "Latest update — git-repo-1 (2026-09-11T18:14Z)" paragraph on `/quickstart.md` for the full synthesis of that run. - 2026-09-09T18:11Z — vault HEAD unchanged at `391e4713`, 2 new wiki commits (`f7450e9` + `7e2072c` — the **twenty-sixth** consecutive sources-sync), 10-dirty-file baseline, the 4 carry-forward untracked directories bumped to 29/24/24/17-day carry-forward. See [`/themes/05-robin-research.md`](/themes/05-robin-research.md) + `/quickstart.md` for the full synthesis of that run. - 2026-09-10T18:19Z — manifest written by a prior ingestion cycle but no corresponding wiki update (the wiki HEAD was still `299eeab` at the 2026-09-10T18:19Z manifest timestamp, between the `7e2072c` 2026-09-09 sources-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp). still `299eeab` at the 2026-09-10T18:19Z manifest timestamp, between the `7e2072c` 2026-09-09 sources-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp). ces-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp). still `299eeab` at the 2026-09-10T18:19Z manifest timestamp, between the `7e2072c` 2026-09-09 sources-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp). 6-09-09 sources-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp).