chore: daily update 2026-08-21
This commit is contained in:
OpenWiki Bot
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{
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"updatedAt": "2026-08-19T18:15:52.460Z",
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"updatedAt": "2026-08-20T18:27:31.629Z",
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"command": "update",
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"model": "MiniMax-M3",
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"status": "complete",
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File diff suppressed because one or more lines are too long
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@@ -13,9 +13,9 @@ Per-connector evidence indexes. Each connector gets its own page (for example `g
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| Connector | Page | Status |
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| --- | --- | --- |
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| Hacker News (`hackernews-1`, LLM-agent topics) | [/sources/hackernews.md](/sources/hackernews.md) | active (last 2026-08-19 18:00 UTC — eighth pull since 2026-08-07 with a fully-zero or noise-only Algolia lane on vendor queries; two adjacents worth flagging for traceability: `49364559` OpenRouter Is Joining Stripe (6 pts, OpenRouter's own blog post confirming the 2026-08-17 rumor) + `49363710` Launch HN: OneCLI (YC S26) (21 pts, cites Hermes/OpenClaw/NanoClaw in submitter text)) |
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| Git repo (`git-repo-1`, Obsidian vault + OpenWiki wiki) | [/sources/git-repo.md](/sources/git-repo.md) | active (last 2026-08-17 18:09 UTC — 7 new vault commits since 2026-08-15: Quintard 2024 + Guo 2026 LDR cycles + 2 new untracked dirs `celvivo_commercial/` + `templates/`; 4 new wiki commits since 2026-08-15 + 1 new wiki file `sources/openwiki-version-drift.md`) |
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| Web Search (`web-search-1`, Tavily) | [/sources/web-search.md](/sources/web-search.md) | active (latest pull 2026-08-03; 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, and 2026-08-19 update attempts skipped — connector not enabled, `TAVILY_API_KEY` missing) |
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| Hacker News (`hackernews-1`, LLM-agent topics) | [/sources/hackernews.md](/sources/hackernews.md) | active (last 2026-08-20 18:00 UTC — ninth pull since 2026-08-07 with an empty / noise-only Algolia lane on vendor queries but with two application-domain thematic hits (`49366519` Nature brain-organoid time-passage paper + `49373812` Science Alert cross-walk) on the `organoid`/`3Brain` lanes; `class-organoid-3d-bioprinting` Last-seen refresh 2026-08-12 → 2026-08-20; two named-stack-adjacent items flagged for traceability: `49367350` "Feature Request: Support AGENTS.md" 340 pts (Claude Code issue requesting native `AGENTS.md` standard support — same AGENTS.md standard referenced in OpenWiki's ROOT_SYSTEM_POLICY) + `49365443` "Unsloth Dynamic 3.0 GGUFs" 314 pts (Unsloth quantization-format release upstream of `unsloth/MiniMax-M3-GGUF`)) |
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| Git repo (`git-repo-1`, Obsidian vault + OpenWiki wiki) | [/sources/git-repo.md](/sources/git-repo.md) | active (last 2026-08-20 18:09 UTC — 0 new vault commits since 2026-08-19T18:08Z fetch (vault silent for the 4th consecutive fetch); 2 new automated wiki commits since 2026-08-19T18:08Z fetch (`a44f284` daily update 2026-08-20 + `bd30339` sources-sync 2026-08-20, the sixth consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern)) |
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| Web Search (`web-search-1`, Tavily) | [/sources/web-search.md](/sources/web-search.md) | active (latest pull 2026-08-03; 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, 2026-08-19, and 2026-08-20 update attempts skipped — connector not enabled, `TAVILY_API_KEY` missing) |
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Additional connectors appear here automatically once they are authenticated and ingested at least once.
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@@ -27,9 +27,9 @@ Additional connectors appear here automatically once they are authenticated and
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| Slack | not configured | `openwiki auth slack` | Needs `search:read` for definitive self-message search; otherwise falls back to recent conversations. |
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| Notion | not configured | Notion MCP credentials | Discovery via `openwiki_list_mcp_tools`; do not guess tool names. |
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| X / Twitter | not configured | `OPENWIKI_X_ACCESS_TOKEN` via `openwiki auth x` | Streams: `home_timeline`, `user_posts`, `mentions`, `bookmarks`, `list_posts`. |
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| Web Search | **active** (`web-search-1`) | `TAVILY_API_KEY` (currently empty) | Tavily via LangChain; reads configured queries. Latest successful pull 2026-08-03 18:08 UTC; the 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, and 2026-08-19 update attempts were skipped because the connector was not enabled in the runtime registry. Evidence at [/sources/web-search.md](/sources/web-search.md). |
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| Hacker News | **active** (`hackernews-1`) | _(public, no auth)_ | Public feeds (`top`, `new`, `best`) + Algolia HN search queries. Source-specific query set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` (LLM-agent topics per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories"). Last successful pull 2026-08-19 18:00 UTC — **eighth pull since 2026-08-07 with a fully-zero or noise-only Algolia lane on vendor queries** (after the 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 + 2026-08-15 + 2026-08-16 + 2026-08-18 fully-zero pulls + the 2026-08-10 + 2026-08-12 + 2026-08-17 noise-only pulls; the 2026-08-19 pull returns to fully-zero across all four vendor queries + the two workflow queries; empty-pulls-on-vendor-queries is normal cadence, not an outage). Adjacents flagged for traceability this run: `49364559` OpenRouter Is Joining Stripe (6 pts, formal confirmation of the 2026-08-17 rumored acquisition) + `49363710` Launch HN: OneCLI (YC S26) (21 pts, cites Hermes/OpenClaw/NanoClaw in submitter text). The combined machine0 (2026-08-18) + OneCLI (2026-08-19) cluster is the strongest two-pull named-stack-cross-walk density since the 2026-08-13 DeepSeek Harness + Codex Linux desktop combination. Evidence at [/sources/hackernews.md](/sources/hackernews.md). |
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| Git repo | **active** (`git-repo-1`) | local repo path | Local Obsidian vault at `/home/ldw/workspace` + OpenWiki wiki at `/home/ldw/.openwiki/wiki` (two configured repos per `~/.openwiki/connectors/git-repo/config.json`). Writes compact manifest; repo itself is source of truth. Evidence at [/sources/git-repo.md](/sources/git-repo.md). Last updated 2026-08-18 18:10 UTC — **0 new vault commits in the 24-hour window** (vault silent; the 2026-08-16 Quintard 2024 + Guo 2026 cluster remains the most recent vault activity); 2 new automated wiki commits since the 2026-08-17 fetch (`8127797` daily update 2026-08-18 + `1fc73ae` sources-sync 2026-08-18, the fourth consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern). |
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| Web Search | **active** (`web-search-1`) | `TAVILY_API_KEY` (currently empty) | Tavily via LangChain; reads configured queries. Latest successful pull 2026-08-03 18:08 UTC; the 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, 2026-08-19, and 2026-08-20 update attempts were skipped because the connector was not enabled in the runtime registry. Evidence at [/sources/web-search.md](/sources/web-search.md). |
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| Hacker News | **active** (`hackernews-1`) | _(public, no auth)_ | Public feeds (`top`, `new`, `best`) + Algolia HN search queries. Source-specific query set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` (LLM-agent topics per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories"). Last successful pull 2026-08-20 18:00 UTC — **ninth pull since 2026-08-07 with an empty / noise-only Algolia lane on vendor queries** (after the 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 + 2026-08-15 + 2026-08-16 + 2026-08-18 + 2026-08-19 fully-zero pulls + the 2026-08-10 + 2026-08-12 + 2026-08-17 noise-only pulls; the 2026-08-20 pull reverts to the noise-only pattern on the 4 vendor queries but with **two application-domain thematic hits** — `49366519` organoid + `49373812` miniature-brains — **the first pull in the 9-pull streak to surface a thematic on the `organoid`/`3Brain` Algolia lanes since the 2026-08-12 `49266068` Wired feature**; empty-pulls-on-vendor-queries is normal cadence, not an outage). The 2026-08-20 pull produces a `class-organoid-3d-bioprinting` theme-row Last-seen refresh 2026-08-12 → 2026-08-20 via the recurrence criterion (the `49366519` Nature organoid-time-passage paper 18 pts + `49373812` Science Alert cross-walk — second neural-organoid HN signal in 9 pulls); two named-stack-adjacent items flagged for traceability: `49367350` "Feature Request: Support AGENTS.md" 340 pts (Claude Code issue requesting native `AGENTS.md` standard support — same AGENTS.md standard referenced in OpenWiki's ROOT_SYSTEM_POLICY; the **first HN signal since the 2026-07-16 `langchain-ai/openwiki` brand entry to surface the `AGENTS.md` standard explicitly**) + `49365443` "Unsloth Dynamic 3.0 GGUFs" 314 pts (Unsloth quantization-format release upstream of `unsloth/MiniMax-M3-GGUF` cited on the `MiniMax-m3` row). Both adjacents stay adjacent-not-promoted per scope discipline. Evidence at [/sources/hackernews.md](/sources/hackernews.md). |
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| Git repo | **active** (`git-repo-1`) | local repo path | Local Obsidian vault at `/home/ldw/workspace` + OpenWiki wiki at `/home/ldw/.openwiki/wiki` (two configured repos per `~/.openwiki/connectors/git-repo/config.json`). Writes compact manifest; repo itself is source of truth. Evidence at [/sources/git-repo.md](/sources/git-repo.md). Last updated 2026-08-20 18:09 UTC — **0 new vault commits in the 24-hour window** (vault silent for the 4th consecutive fetch; the 2026-08-16 Quintard 2024 + Guo 2026 cluster remains the most recent vault activity, **4 calendar days stale**); 2 new automated wiki commits since the 2026-08-19 fetch (`a44f284` daily update 2026-08-20 + `bd30339` sources-sync 2026-08-20, the **sixth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + now `bd30339` 2026-08-20). |
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## How new source pages get created
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@@ -1,10 +1,10 @@
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---
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type: "Reference"
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title: "Git repo — evidence index (Obsidian vault, Robin)"
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description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD a4fa5a32, 2026-08-16, **0 new vault commits in the 2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window — vault is silent for the 3rd consecutive fetch**) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD dcb53a2, 2026-08-19, **2 new automated wiki commits in the 2026-08-18T18:10Z → 2026-08-19T18:08Z window: `7e904ec` daily update 2026-08-19 + `dcb53a2` sources-sync 2026-08-19 — the fifth consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern**). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
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description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD a4fa5a32, 2026-08-16, **0 new vault commits in the 2026-08-19T18:08Z → 2026-08-20T18:09Z 24-hour window — vault is silent for the 4th consecutive fetch after the 2026-08-16 Quintard + Guo cluster**) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD bd30339, 2026-08-20, **2 new automated wiki commits in the 2026-08-19T18:08Z → 2026-08-20T18:09Z window: `a44f284` daily update 2026-08-20 + `bd30339` sources-sync 2026-08-20 — the sixth consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern**). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
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resource: "~/.openwiki/connectors/git-repo/config.json"
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tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-19, 2026-08-18, 2026-08-17, 2026-08-15, 2026-08-13]
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timestamp: 2026-08-19T18:08:24Z
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tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-20, 2026-08-19, 2026-08-18, 2026-08-17, 2026-08-15, 2026-08-13]
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timestamp: 2026-08-20T18:09:15Z
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---
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# Git repo — evidence index (Obsidian vault + OpenWiki wiki)
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@@ -47,52 +47,57 @@ help locate things in the vault, not summarize their content.
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the 4 sources-syncs (`997b648` + `be49285` + `1fc73ae` + `dcb53a2`)
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all re-applied the `2507925` 2026-08-15 count-data wipe pattern).
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- **Auth:** local paths only — no remote, no credentials.
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- **Latest fetch:** `2026-08-19T18:08:24Z` (raw manifest
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`~/.openwiki/connectors/git-repo/raw/2026-08-19T18-08-24-164Z/manifest.json`).
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- **Latest fetch:** `2026-08-20T18:09:15Z` (raw manifest
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`~/.openwiki/connectors/git-repo/raw/2026-08-20T18-09-15-122Z/manifest.json`).
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- **Source config:** `~/.openwiki/connectors/git-repo/config.json`
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- **State:** `~/.openwiki/connectors/git-repo/state.json` records
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`latestIds` per repo; the 2026-08-19T18:08Z fetch observed vault HEAD
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`latestIds` per repo; the 2026-08-20T18:09Z fetch observed vault HEAD
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unchanged at `a4fa5a32` (2026-08-16 — same as the 2026-08-17T18:09Z +
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2026-08-18T18:10Z + 2026-08-19T18:08Z fetches; **0 new vault commits
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in the 24-hour window — vault is silent for the 3rd consecutive
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fetch**), and observed `openwiki-wiki` bumped from `1fc73ae`
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(2026-08-18T18:10Z fetch) to `dcb53a2` (2 new automated wiki commits
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in the 24-hour window: `7e904ec` daily update 2026-08-19 +
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`dcb53a2` sources-sync 2026-08-19 — the **fifth** consecutive
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2026-08-18T18:10Z + 2026-08-19T18:08Z + 2026-08-20T18:09Z fetches;
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**0 new vault commits in the 24-hour window — vault is silent for
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the 4th consecutive fetch** after the 2026-08-16 Quintard + Guo
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cluster), and observed `openwiki-wiki` bumped from `dcb53a2`
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(2026-08-19T18:08Z fetch) to `bd30339` (2 new automated wiki commits
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in the 24-hour window: `a44f284` daily update 2026-08-20 +
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`bd30339` sources-sync 2026-08-20 — the **sixth** consecutive
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sources-sync re-applying the 2026-08-15 count-data wipe pattern
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after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae`
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2026-08-18).
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2026-08-18 + `dcb53a2` 2026-08-19 + now `bd30339` 2026-08-20).
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## obsidian-vault — working-tree status (2026-08-19)
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## obsidian-vault — working-tree status (2026-08-20)
|
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- **Branch:** `main`
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- **HEAD:** `a4fa5a323d6dcabeb9eccad49e636ee6ba5f87a6` (vault HEAD
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**unchanged** at `a4fa5a32` across the 2026-08-19T18:08Z fetch —
|
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**0 new commits** in the 2026-08-18T18:10Z → 2026-08-19T18:08Z
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24-hour window; the vault is silent for the **3rd consecutive
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fetch** after the 2026-08-17T18:09Z + 2026-08-18T18:10Z silent
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windows. The 2026-08-16 Quintard 2024 Nat Commun 4-commit LDR
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cycle + Guo 2026 Front Cell Dev Biol 3-commit LDR cycle remain
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the most recent committed vault activity (vault HEAD last bumped
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on 2026-08-16, **3 calendar days before this fetch** — same state
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as the 2026-08-17T18:09Z + 2026-08-18T18:10Z fetches).
|
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**unchanged** at `a4fa5a32` across the 2026-08-20T18:09Z fetch —
|
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**0 new commits** in the 2026-08-19T18:08Z → 2026-08-20T18:09Z
|
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24-hour window; the vault is silent for the **4th consecutive
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fetch** after the 2026-08-17T18:09Z + 2026-08-18T18:10Z +
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2026-08-19T18:08Z silent windows. The 2026-08-16 Quintard 2024
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Nat Commun 4-commit LDR cycle + Guo 2026 Front Cell Dev Biol
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3-commit LDR cycle remain the most recent committed vault
|
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activity (vault HEAD last bumped on 2026-08-16, **4 calendar
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days before this fetch** — same state as the
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2026-08-17T18:09Z + 2026-08-18T18:10Z + 2026-08-19T18:08Z
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fetches).
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- **mtime activity in window:** **0 new mtime changes** in the
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2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window. The 2
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2026-08-19T18:08Z → 2026-08-20T18:09Z 24-hour window. The 2
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untracked dirs from the 2026-08-17T18:09Z fetch are unchanged:
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`celvivo_commercial/` last touched 2026-08-17 15:04 +0800 (= 07:04
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UTC, **before** the 24h window) + `templates/` last touched
|
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2026-08-16 10:27 +0800 (= 02:27 UTC, well before the window). The
|
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`Review/zhou2023_computer_vision_microfluidics.md` first-entry
|
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file is unchanged from the 2026-08-17T18:09Z fetch (mtime
|
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2026-08-11, **8-day carry-forward** in the untracked set at this
|
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2026-08-11, **9-day carry-forward** in the untracked set at this
|
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fetch; the structural signal continues to weaken per the
|
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Notable-entity entry on the `Review/` subfolder).
|
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- **Ahead of origin/main:** 20 commits new since 2026-08-03 fetch (unchanged from the 2026-08-17T18:09Z + 2026-08-18T18:10Z fetches — vault is silent in the 2026-08-18T18:10Z → 2026-08-19T18:08Z window).
|
||||
- **Ahead of origin/main:** 20 commits new since 2026-08-03 fetch (unchanged from the 2026-08-17T18:09Z + 2026-08-18T18:10Z + 2026-08-19T18:08Z fetches — vault is silent in the 2026-08-19T18:08Z → 2026-08-20T18:09Z window).
|
||||
- **Dirty:** yes — the untracked file set is **unchanged** from the
|
||||
2026-08-17T18:09Z fetch (no new untracked files or directories
|
||||
appeared in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour
|
||||
window, and no new untracked files or directories appeared in the
|
||||
2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window either). The
|
||||
window, no new untracked files or directories appeared in the
|
||||
2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window either, and
|
||||
no new untracked files or directories appeared in the
|
||||
2026-08-19T18:08Z → 2026-08-20T18:09Z 24-hour window either). The
|
||||
25+ untracked entries from the 2026-08-17T18:09Z fetch carry
|
||||
forward unchanged: 8 × `02-Clients/Agents/区域-2026-0807.md`
|
||||
distributor-rebuild files (per the 2026-08-07 Hermes hook 4 sweep)
|
||||
@@ -107,10 +112,10 @@ help locate things in the vault, not summarize their content.
|
||||
directories from the 2026-08-17T18:09Z fetch (`celvivo_commercial/`
|
||||
+ `templates/`). The **`Review/zhou2023_computer_vision_microfluidics.md`
|
||||
first entry in the new `Review/` subfolder** is still **untracked**
|
||||
(Robin has not yet committed it) — **8-day carry-forward** at this
|
||||
(Robin has not yet committed it) — **9-day carry-forward** at this
|
||||
fetch; the structural signal continues to weaken per the
|
||||
Notable-entity entry on the `Review/` subfolder (the subfolder has
|
||||
been a single-entry watchlist since 2026-08-13, now **6 fetches
|
||||
been a single-entry watchlist since 2026-08-13, now **7 fetches
|
||||
silent**).
|
||||
- **Working-tree status (raw manifest, abbreviated):**
|
||||
|
||||
@@ -321,34 +326,36 @@ indexed on [`/sources/literature.md`](/sources/literature.md). The
|
||||
`1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran
|
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on the same paper.
|
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|
||||
## openwiki-wiki — working-tree status (2026-08-19)
|
||||
## openwiki-wiki — working-tree status (2026-08-20)
|
||||
|
||||
- **Branch:** `main`
|
||||
- **HEAD:** `dcb53a2873d37b6396de682d658433c2ea85b376` (the
|
||||
- **HEAD:** `bd30339182707c42328c2920a7d744eb360df618` (the
|
||||
`chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts
|
||||
(sources-sync 2026-08-19)` commit — same auto-source-sync job that
|
||||
(sources-sync 2026-08-20)` commit — same auto-source-sync job that
|
||||
carried the 2026-08-15 count-data wipe + re-applied the pattern on
|
||||
2026-08-16 + 2026-08-17 + 2026-08-18 + now 2026-08-19; see
|
||||
Notable-entity § "2026-08-15 sources-sync bug" for the operational
|
||||
note). The 2026-08-19T18:08Z fetch observed wiki HEAD bumped from
|
||||
`1fc73ae` (2026-08-18T18:10Z fetch) to `dcb53a2` — **2 new
|
||||
automated wiki commits** in the 2026-08-18T18:10Z →
|
||||
2026-08-19T18:08Z 24-hour window: (a) `7e904ec` chore: daily update
|
||||
2026-08-19 (2026-08-19 02:23 +0800); (b) `dcb53a2` chore(sources):
|
||||
2026-08-16 + 2026-08-17 + 2026-08-18 + 2026-08-19 + now 2026-08-20;
|
||||
see Notable-entity § "2026-08-15 sources-sync bug" for the
|
||||
operational note). The 2026-08-20T18:09Z fetch observed wiki HEAD
|
||||
bumped from `dcb53a2` (2026-08-19T18:08Z fetch) to `bd30339` —
|
||||
**2 new automated wiki commits** in the 2026-08-19T18:08Z →
|
||||
2026-08-20T18:09Z 24-hour window: (a) `a44f284` chore: daily update
|
||||
2026-08-20 (2026-08-20 02:23 +0800); (b) `bd30339` chore(sources):
|
||||
refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync
|
||||
2026-08-19, 2026-08-19 02:30 +0800). Both commits are routine
|
||||
auto-orchestration — the `7e904ec` daily update carried the
|
||||
synthesis-layer edits from the prior HN-1 2026-08-19T18:00Z +
|
||||
web-search-1 2026-08-19 + git-repo-1 2026-08-18T18:10Z runs; the
|
||||
`dcb53a2` sources-sync re-applied the count-data wipe pattern on
|
||||
NocoDB / SeaFile / Wiki.js / RAGFlow for the **fifth** consecutive
|
||||
time.
|
||||
2026-08-20, 2026-08-20 02:30 +0800). Both commits are routine
|
||||
auto-orchestration — the `a44f284` daily update carried the
|
||||
synthesis-layer edits from the prior HN-1 2026-08-20T18:00Z +
|
||||
web-search-1 2026-08-20 (skipped) + git-repo-1 2026-08-19T18:08Z
|
||||
runs; the `bd30339` sources-sync re-applied the count-data wipe
|
||||
pattern on NocoDB / SeaFile / Wiki.js / RAGFlow for the **sixth**
|
||||
consecutive time (after `997b648` 2026-08-16 + `be49285`
|
||||
2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + now
|
||||
`bd30339` 2026-08-20).
|
||||
- **Working-tree state:** 10 modified files (uncommitted — pending
|
||||
next CLI orchestration), **unchanged from the 2026-08-18T18:10Z
|
||||
fetch** (the `7e904ec` 2026-08-19 daily update committed some
|
||||
next CLI orchestration), **unchanged from the 2026-08-19T18:08Z
|
||||
fetch** (the `a44f284` 2026-08-20 daily update committed some
|
||||
synthesis edits but the working tree still shows 10 uncommitted
|
||||
files because the very next synthesis edits from this git-repo-1
|
||||
2026-08-19T18:08Z run re-touch the same files). The 10 dirty files
|
||||
2026-08-20T18:09Z run re-touch the same files). The 10 dirty files
|
||||
are:
|
||||
- `.last-update.json` — CLI metadata, will be updated when this run's
|
||||
`status: complete` lands.
|
||||
@@ -357,51 +364,57 @@ on the same paper.
|
||||
+ git-repo-1 2026-08-13 runs, plus the "Latest update —
|
||||
git-repo-1 (2026-08-15T18:07Z)" + "Latest update — git-repo-1
|
||||
(2026-08-17T18:09Z)" + "Latest update — git-repo-1
|
||||
(2026-08-18T18:10Z)" paragraphs added by the 2026-08-15 +
|
||||
2026-08-17 + 2026-08-18 git-repo runs; this git-repo-1
|
||||
2026-08-19T18:08Z run adds the "Latest update — git-repo-1
|
||||
(2026-08-19T18:08Z)" paragraph and updates the Backlog git-repo
|
||||
entry to reflect the new wiki HEAD `dcb53a2`.
|
||||
(2026-08-18T18:10Z)" + "Latest update — git-repo-1
|
||||
(2026-08-19T18:08Z)" paragraphs added by the 2026-08-15 +
|
||||
2026-08-17 + 2026-08-18 + 2026-08-19 git-repo runs; this
|
||||
git-repo-1 2026-08-20T18:09Z run adds the "Latest update —
|
||||
git-repo-1 (2026-08-20T18:09Z)" paragraph and updates the
|
||||
Backlog git-repo entry to reflect the new wiki HEAD `bd30339`.
|
||||
- `sources/README.md` — refreshed connector-roll table row for
|
||||
web-search-1 (added the 2026-08-15 + 2026-08-17 + 2026-08-18 +
|
||||
2026-08-19 skips to the 7-entry skip streak) + added frontmatter
|
||||
placeholders to nocodb.md / ragflow.md / seafile.md / wikijs.md
|
||||
during the 2026-08-15 daily update.
|
||||
2026-08-19 + 2026-08-20 skips to the 8-entry skip streak) +
|
||||
added frontmatter placeholders to nocodb.md / ragflow.md /
|
||||
seafile.md / wikijs.md during the 2026-08-15 daily update.
|
||||
- `sources/hackernews.md` — accumulated "Latest update —
|
||||
2026-08-15 18:00 UTC" + "Latest update — 2026-08-16 18:00 UTC" +
|
||||
"Latest update — 2026-08-17 18:00 UTC" + "Latest update —
|
||||
2026-08-18 18:00 UTC" + "Latest update — 2026-08-19 18:00 UTC"
|
||||
sections from the prior HN-1 2026-08-15 + HN-1 2026-08-16 + HN-1
|
||||
2026-08-17 + HN-1 2026-08-18 + HN-1 2026-08-19 runs (Auto-research
|
||||
with codex 232x Faster Kernel + Anthropic multi-agent +
|
||||
Stripe/OpenRouter + Copilot Autofix + Qwen 3.8 27B + Agent Mesh +
|
||||
machine0 YC S26 + Amazon order emails AI-agent data +
|
||||
OpenRouter-Stripe formal confirmation + OneCLI + Extensible
|
||||
Software + Frugal Tokens flag-for-traceability callouts + the
|
||||
4th / 5th / 6th / 7th / 8th consecutive empty / noise-only
|
||||
Algolia lane streak notes) — landed in uncommitted state during
|
||||
the HN-1 runs.
|
||||
+ "Latest update — 2026-08-20 18:00 UTC" sections from the
|
||||
prior HN-1 2026-08-15 + HN-1 2026-08-16 + HN-1 2026-08-17 +
|
||||
HN-1 2026-08-18 + HN-1 2026-08-19 + HN-1 2026-08-20 runs
|
||||
(Auto-research with codex 232x Faster Kernel + Anthropic
|
||||
multi-agent + Stripe/OpenRouter + Copilot Autofix + Qwen 3.8
|
||||
27B + Agent Mesh + machine0 YC S26 + Amazon order emails
|
||||
AI-agent data + OpenRouter-Stripe formal confirmation + OneCLI
|
||||
+ Extensible Software + Frugal Tokens + the Nature brain
|
||||
organoid time-passage paper + Anthropic Claude Code AGENTS.md
|
||||
feature request + Unsloth Dynamic 3.0 GGUFs flag-for-
|
||||
traceability callouts + the 4th / 5th / 6th / 7th / 8th /
|
||||
9th consecutive empty / noise-only Algolia lane streak notes)
|
||||
— landed in uncommitted state during the HN-1 runs.
|
||||
- `sources/index.md` — re-appears as dirty in the working tree at
|
||||
this fetch (was committed by `151d22b` 2026-08-16 daily update,
|
||||
then re-touched by subsequent HN-1 + git-repo-1 synthesis edits
|
||||
and re-appears as uncommitted). Status: accumulated
|
||||
synthesis-layer edits from the prior HN-1 2026-08-13 + HN-1
|
||||
2026-08-15 + HN-1 2026-08-16 + HN-1 2026-08-17 + HN-1 2026-08-18
|
||||
+ HN-1 2026-08-19 + git-repo-1 2026-08-13 + git-repo-1 2026-08-15
|
||||
+ git-repo-1 2026-08-17 + git-repo-1 2026-08-18 + this
|
||||
git-repo-1 2026-08-19 runs.
|
||||
+ HN-1 2026-08-19 + HN-1 2026-08-20 + git-repo-1 2026-08-13 +
|
||||
git-repo-1 2026-08-15 + git-repo-1 2026-08-17 + git-repo-1
|
||||
2026-08-18 + git-repo-1 2026-08-19 + this git-repo-1
|
||||
2026-08-20 runs.
|
||||
- `sources/nocodb.md` — `openwiki_generated: true` placeholder
|
||||
frontmatter auto-applied during the 2026-08-15 daily update +
|
||||
carried forward in 2026-08-16 + 2026-08-17 + 2026-08-18 +
|
||||
2026-08-19 daily updates; **placeholder resolved by the
|
||||
2026-08-18T18:10Z update run** (proper `type` / `title` /
|
||||
2026-08-19 + 2026-08-20 daily updates; **placeholder resolved
|
||||
by the 2026-08-18T18:10Z update run** (proper `type` / `title` /
|
||||
`description` / `tags` frontmatter now in place); **count data
|
||||
wiped** by `2507925` 2026-08-15 sources-sync (NocoDB went from
|
||||
6614 → 0 records) and the wipe persists across the 4 subsequent
|
||||
6614 → 0 records) and the wipe persists across the 5 subsequent
|
||||
sources-syncs (`997b648` 2026-08-16 + `be49285` 2026-08-17 +
|
||||
`1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 — the count stays at
|
||||
0 across all 5 sources-syncs); body content (13 literature tables
|
||||
+ record counts from `1737454` baseline) remains intact.
|
||||
`1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + `bd30339`
|
||||
2026-08-20 — the count stays at 0 across all 6 sources-syncs);
|
||||
body content (13 literature tables + record counts from
|
||||
`1737454` baseline) remains intact.
|
||||
- `sources/ragflow.md` — same `openwiki_generated: true` placeholder
|
||||
auto-applied during the 2026-08-15 daily update;
|
||||
**placeholder resolved by the 2026-08-18T18:10Z update run**
|
||||
@@ -421,15 +434,18 @@ on the same paper.
|
||||
- `sources/web-search.md` — accumulated "2026-08-15 attempted
|
||||
update — skipped" + "2026-08-17 attempted update — skipped" +
|
||||
"2026-08-18 attempted update — skipped" + "2026-08-19 attempted
|
||||
update — skipped" sections from the web-search-1 2026-08-15 +
|
||||
web-search-1 2026-08-17 + web-search-1 2026-08-18 + web-search-1
|
||||
2026-08-19 runs (5th + 6th + 7th + 8th consecutive skips on the
|
||||
same code path).
|
||||
update — skipped" + "2026-08-20 attempted update — skipped"
|
||||
sections from the web-search-1 2026-08-15 + web-search-1
|
||||
2026-08-17 + web-search-1 2026-08-18 + web-search-1 2026-08-19 +
|
||||
web-search-1 2026-08-20 runs (5th + 6th + 7th + 8th + 9th
|
||||
consecutive skips on the same code path).
|
||||
- `sources/wikijs.md` — same `openwiki_generated: true` placeholder
|
||||
auto-applied during the 2026-08-15 daily update; **count data
|
||||
wiped** by `2507925` 2026-08-15 sources-sync (Wiki.js went from
|
||||
83 → 0 unique pages; ID range 22..1704 → 0..0) and the wipe
|
||||
persists across the 4 subsequent sources-syncs.
|
||||
persists across the 5 subsequent sources-syncs (`997b648`
|
||||
2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 +
|
||||
`dcb53a2` 2026-08-19 + `bd30339` 2026-08-20).
|
||||
- **Auth:** local path only — no remote, no credentials.
|
||||
- **New file in this window:** `sources/openwiki-version-drift.md`
|
||||
was created in the 2026-08-17 daily update commit `5c70881` (auto-
|
||||
@@ -443,6 +459,8 @@ on the same paper.
|
||||
|
||||
| Date | Hash | Note |
|
||||
| --- | --- | --- |
|
||||
| 2026-08-20 | `bd30339` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-20) — **count-data wipe re-applied** for the **sixth** consecutive sources-sync (after 2026-08-15 `2507925` + 2026-08-16 `997b648` + 2026-08-17 `be49285` + 2026-08-18 `1fc73ae` + 2026-08-19 `dcb53a2`); see Notable-entity § "2026-08-15 sources-sync bug" |
|
||||
| 2026-08-20 | `a44f284` | chore: daily update 2026-08-20 (synthesis-layer edits accumulated from the prior HN-1 2026-08-20T18:00Z + web-search-1 2026-08-20 (skipped) + git-repo-1 2026-08-19T18:08Z runs) |
|
||||
| 2026-08-19 | `dcb53a2` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-19) — **count-data wipe re-applied** for the **fifth** consecutive sources-sync (after 2026-08-15 `2507925` + 2026-08-16 `997b648` + 2026-08-17 `be49285` + 2026-08-18 `1fc73ae`); see Notable-entity § "2026-08-15 sources-sync bug" |
|
||||
| 2026-08-19 | `7e904ec` | chore: daily update 2026-08-19 (synthesis-layer edits accumulated from the prior HN-1 2026-08-19T18:00Z + web-search-1 2026-08-19 + git-repo-1 2026-08-18T18:10Z runs + the prior `sources/openwiki-version-drift.md` carryover) |
|
||||
| 2026-08-18 | `1fc73ae` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-18) — **count-data wipe re-applied** for the **fourth** consecutive sources-sync (after 2026-08-15 `2507925` + 2026-08-16 `997b648` + 2026-08-17 `be49285`); see Notable-entity § "2026-08-15 sources-sync bug" |
|
||||
@@ -521,10 +539,11 @@ pipeline catches up.
|
||||
| --- | --- | --- |
|
||||
| 2026-08-15T18:07:49Z → 2026-08-17T18:09:32Z | HEAD `297f106d` → `a4fa5a32` (**7 new commits**: `0fc8db24` + `290e9635` + `24c713de` + `4073abf4` Quintard 2024 Nat Commun microfluidic vascularized organoid chip 4-commit LDR cycle + `2e6f5989` + `00f824f2` + `a4fa5a32` Guo 2026 Front Cell Dev Biol organoid ethics systematic review 3-commit LDR cycle — **first time since the 2026-07-28 / 2026-07-29 Parate / Lee / Hodge cluster that two new paper deep-reads landed on `main` in the same 48-hour window**) | HEAD `2507925` → `be49285` (**4 new commits**: `151d22b` daily update 2026-08-16 + `997b648` sources-sync 2026-08-16 + `5c70881` daily update 2026-08-17 + `be49285` sources-sync 2026-08-17) |
|
||||
| 2026-08-17T18:09:32Z → 2026-08-18T18:10:12Z | HEAD **unchanged** at `a4fa5a32` (**0 new commits**, **0 new mtime changes** — vault is silent in this 24-hour window; the 2026-08-16 Quintard 2024 + Guo 2026 cluster remains the most recent vault activity) | HEAD `be49285` → `1fc73ae` (**2 new automated commits**: `8127797` chore: daily update 2026-08-18 + `1fc73ae` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-18, the **fourth** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern)) |
|
||||
| 2026-08-19T18:08:24Z → 2026-08-20T18:09:15Z | HEAD **unchanged** at `a4fa5a32` (**0 new commits**, **0 new mtime changes** — vault is silent in this 24-hour window for the **4th consecutive fetch**; the 2026-08-16 Quintard 2024 + Guo 2026 cluster remains the most recent vault activity, **4 calendar days stale**) | HEAD `dcb53a2` → `bd30339` (**2 new automated commits**: `a44f284` chore: daily update 2026-08-20 + `bd30339` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-20, the **sixth** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + now `bd30339` 2026-08-20)) |
|
||||
| 2026-08-18T18:10:12Z → 2026-08-19T18:08:24Z | HEAD **unchanged** at `a4fa5a32` (**0 new commits**, **0 new mtime changes** — vault is silent in this 24-hour window for the **3rd consecutive fetch**; the 2026-08-16 Quintard 2024 + Guo 2026 cluster remains the most recent vault activity, **3 calendar days stale**) | HEAD `1fc73ae` → `dcb53a2` (**2 new automated commits**: `7e904ec` chore: daily update 2026-08-19 + `dcb53a2` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-19, the **fifth** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + now `dcb53a2` 2026-08-19)) |
|
||||
| **Net new external evidence** | **2 new paper deep-reads** (from the 2026-08-15T18:07Z → 2026-08-17T18:09Z window): Quintard 2024 Nat Commun microfluidic vascularized organoid chip + Guo 2026 Front Cell Dev Biol organoid ethics systematic review. **2 new untracked directories** (from the same window): `celvivo_commercial/1331651_20260630_131201.pdf` (the 6-30 quote PDF migrated into a new folder) + `templates/类器官IRB申请清单.md` (the IRB application checklist derived from Guo 2026 — Robin's first customer-facing sales ammunition template produced from a single deep-read). The `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder is still untracked, carrying forward from the 2026-08-13 fetch (**8-day carry-forward** at the 2026-08-19T18:08Z fetch). **No new vault evidence in the 2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window** | **1 new wiki file** (from the 2026-08-17 daily update `5c70881`): `sources/openwiki-version-drift.md` (auto-generated OpenWiki version-drift monitor; v0.3.1 local → v0.3.3 npm latest as of 2026-08-15T20:00:03Z). Synthesis-layer edits accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + HN-1 2026-08-16 + HN-1 2026-08-17 + HN-1 2026-08-18 + HN-1 2026-08-19 + web-search-1 2026-08-15 + web-search-1 2026-08-17 + web-search-1 2026-08-18 + web-search-1 2026-08-19 + git-repo-1 2026-08-13 + git-repo-1 2026-08-15 + git-repo-1 2026-08-17 + git-repo-1 2026-08-18 + this git-repo-1 2026-08-19 runs are pending the next CLI commit cycle |
|
||||
| Untracked → committed migrations | **Quintard 2024 file (4 commits)** + **Guo 2026 file (3 commits)** all moved from absent → committed on `main` (in the 2026-08-15T18:07Z → 2026-08-17T18:09Z window); **the 2 new untracked directories** are net-new in the same window. **None** in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour window (vault silent) or the 2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window (vault silent for the 3rd consecutive fetch) | **2026-08-15T18:07Z → 2026-08-17T18:09Z window**: the `sources/index.md` from the 2026-08-15 dirty set was committed by the 2026-08-16 daily update `151d22b`; the remaining 9 dirty files are uncommitted synthesis edits accumulated across the prior HN-1 + web-search-1 + git-repo-1 runs. **2026-08-17T18:09Z → 2026-08-18T18:10Z window**: the `8127797` 2026-08-18 daily update committed a subset of the synthesis-layer edits from the prior HN-1 2026-08-18T18:00Z + git-repo-1 2026-08-17T18:09Z runs (touching `commitments.md` + `index.md` + `quickstart.md` + `sources/{README,git-repo,hackernews,index,literature,nocodb,ragflow,seafile,web-search,wikijs}.md` + `themes/{01-organoid-equipment,05-robin-research}.md` per `git show --stat 8127797`); the 9 dirty files re-appear in the working tree because the very next synthesis edits from this git-repo-1 2026-08-18T18:10Z run re-touch the same files. **2026-08-18T18:10Z → 2026-08-19T18:08Z window**: the `7e904ec` 2026-08-19 daily update committed a subset of the synthesis-layer edits from the prior HN-1 2026-08-19T18:00Z + web-search-1 2026-08-19 + git-repo-1 2026-08-18T18:10Z runs (touching `.last-update.json` + `quickstart.md` + `sources/{README,git-repo,hackernews,index,nocodb,ragflow,seafile,web-search,wikijs}.md` + `themes/05-robin-research.md` per `git show --stat 7e904ec`); the 10 dirty files (`.last-update.json` + `quickstart.md` + `sources/{README,hackernews,index,nocodb,ragflow,seafile,web-search,wikijs}.md`) re-appear in the working tree because the very next synthesis edits from this git-repo-1 2026-08-19T18:08Z run re-touch the same files. The 10 dirty files are awaiting the next CLI commit cycle |
|
||||
| **Operational issue carried over from prior runs** | n/a | **`2507925` 2026-08-15 sources-sync bug** + the 2026-08-16 `997b648` + 2026-08-17 `be49285` + 2026-08-18 `1fc73ae` + 2026-08-19 `dcb53a2` sources-syncs (which re-applied the same operational pattern as `2507925` — NocoDB / Wiki.js / RAGFlow count values stayed zero across all **5** sources-syncs). The on-disk `~/.openwiki/connectors/web-search/config.json` is unaffected — this is a wiki-side CRON issue with the auto-source-sync job, not a connector config issue. Recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page. The data is recoverable from `git show 8ddc6d9:sources/nocodb.md` etc. for any future recovery commit |
|
||||
| **Net new external evidence** | **2 new paper deep-reads** (from the 2026-08-15T18:07Z → 2026-08-17T18:09Z window): Quintard 2024 Nat Commun microfluidic vascularized organoid chip + Guo 2026 Front Cell Dev Biol organoid ethics systematic review. **2 new untracked directories** (from the same window): `celvivo_commercial/1331651_20260630_131201.pdf` (the 6-30 quote PDF migrated into a new folder) + `templates/类器官IRB申请清单.md` (the IRB application checklist derived from Guo 2026 — Robin's first customer-facing sales ammunition template produced from a single deep-read). The `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder is still untracked, carrying forward from the 2026-08-13 fetch (**9-day carry-forward** at the 2026-08-20T18:09Z fetch — was 8-day at the 2026-08-19T18:08Z fetch). **No new vault evidence in the 2026-08-19T18:08Z → 2026-08-20T18:09Z 24-hour window** | **1 new wiki file** (from the 2026-08-17 daily update `5c70881`): `sources/openwiki-version-drift.md` (auto-generated OpenWiki version-drift monitor; v0.3.1 local → v0.3.3 npm latest as of 2026-08-15T20:00:03Z). **Wiki-side**: the 2026-08-20T18:09Z fetch observed wiki HEAD bump `dcb53a2` → `bd30339` — 2 new automated wiki commits (`a44f284` daily update 2026-08-20 + `bd30339` sources-sync 2026-08-20 — the **sixth** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern). Synthesis-layer edits accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + HN-1 2026-08-16 + HN-1 2026-08-17 + HN-1 2026-08-18 + HN-1 2026-08-19 + HN-1 2026-08-20 + web-search-1 2026-08-15 + web-search-1 2026-08-17 + web-search-1 2026-08-18 + web-search-1 2026-08-19 + web-search-1 2026-08-20 (skipped) + git-repo-1 2026-08-13 + git-repo-1 2026-08-15 + git-repo-1 2026-08-17 + git-repo-1 2026-08-18 + git-repo-1 2026-08-19 + this git-repo-1 2026-08-20 runs are pending the next CLI commit cycle |
|
||||
| Untracked → committed migrations | **Quintard 2024 file (4 commits)** + **Guo 2026 file (3 commits)** all moved from absent → committed on `main` (in the 2026-08-15T18:07Z → 2026-08-17T18:09Z window); **the 2 new untracked directories** are net-new in the same window. **None** in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour window (vault silent) or the 2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window (vault silent for the 3rd consecutive fetch) or the 2026-08-19T18:08Z → 2026-08-20T18:09Z 24-hour window (vault silent for the 4th consecutive fetch). | **2026-08-15T18:07Z → 2026-08-17T18:09Z window**: the `sources/index.md` from the 2026-08-15 dirty set was committed by the 2026-08-16 daily update `151d22b`; the remaining 9 dirty files are uncommitted synthesis edits accumulated across the prior HN-1 + web-search-1 + git-repo-1 runs. **2026-08-17T18:09Z → 2026-08-18T18:10Z window**: the `8127797` 2026-08-18 daily update committed a subset of the synthesis-layer edits from the prior HN-1 2026-08-18T18:00Z + git-repo-1 2026-08-17T18:09Z runs (touching `commitments.md` + `index.md` + `quickstart.md` + `sources/{README,git-repo,hackernews,index,literature,nocodb,ragflow,seafile,web-search,wikijs}.md` + `themes/{01-organoid-equipment,05-robin-research}.md` per `git show --stat 8127797`); the 9 dirty files re-appear in the working tree because the very next synthesis edits from this git-repo-1 2026-08-18T18:10Z run re-touch the same files. **2026-08-18T18:10Z → 2026-08-19T18:08Z window**: the `7e904ec` 2026-08-19 daily update committed a subset of the synthesis-layer edits from the prior HN-1 2026-08-19T18:00Z + web-search-1 2026-08-19 + git-repo-1 2026-08-18T18:10Z runs (touching `.last-update.json` + `quickstart.md` + `sources/{README,git-repo,hackernews,index,nocodb,ragflow,seafile,web-search,wikijs}.md` + `themes/05-robin-research.md` per `git show --stat 7e904ec`); the 10 dirty files (`.last-update.json` + `quickstart.md` + `sources/{README,hackernews,index,nocodb,ragflow,seafile,web-search,wikijs}.md`) re-appear in the working tree because the very next synthesis edits from this git-repo-1 2026-08-19T18:08Z run re-touch the same files. **2026-08-19T18:08Z → 2026-08-20T18:09Z window**: the `a44f284` 2026-08-20 daily update committed a subset of the synthesis-layer edits from the prior HN-1 2026-08-20T18:00Z + web-search-1 2026-08-20 (skipped) + git-repo-1 2026-08-19T18:08Z runs; the 10 dirty files re-appear in the working tree because the very next synthesis edits from this git-repo-1 2026-08-20T18:09Z run re-touch the same files. The 10 dirty files are awaiting the next CLI commit cycle |
|
||||
| **Operational issue carried over from prior runs** | n/a | **`2507925` 2026-08-15 sources-sync bug** + the 2026-08-16 `997b648` + 2026-08-17 `be49285` + 2026-08-18 `1fc73ae` + 2026-08-19 `dcb53a2` + 2026-08-20 `bd30339` sources-syncs (which re-applied the same operational pattern as `2507925` — NocoDB / Wiki.js / RAGFlow count values stayed zero across all **6** sources-syncs). The on-disk `~/.openwiki/connectors/web-search/config.json` is unaffected — this is a wiki-side CRON issue with the auto-source-sync job, not a connector config issue. Recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page. The data is recoverable from `git show 8ddc6d9:sources/nocodb.md` etc. for any future recovery commit |
|
||||
|
||||
## Vault navigation index
|
||||
|
||||
@@ -577,8 +596,8 @@ Markdown file counts per deep-read subfolder:
|
||||
| `Microbioreactor/` | 1 (new as of 2026-08-07 — Rosero 2026 Front Bioeng Biotechnol) |
|
||||
| `Cells/` | 1 (new as of 2026-08-08 — Fernandez Vallone 2026 Cells THSDC) |
|
||||
| `Review/` | 1 (new as of 2026-08-13 — Zhou 2023 computer vision + microfluidics, **untracked**, **8-day carry-forward** at 2026-08-19 fetch, **6 fetches silent** — structural signal continuing to weaken) |
|
||||
| `templates/` | 1 (new as of 2026-08-17 — `类器官IRB申请清单.md`, derived from the Guo 2026 ethics deep-read; Robin's first customer-facing template produced from a single deep-read, **untracked**, **3-day carry-forward** at 2026-08-19 fetch) |
|
||||
| `celvivo_commercial/` | 1 (new as of 2026-08-17 — `1331651_20260630_131201.pdf`, the 6-30 quote PDF migrated into a new folder, **untracked**, **3-day carry-forward** at 2026-08-19 fetch) |
|
||||
| `templates/` | 1 (new as of 2026-08-17 — `类器官IRB申请清单.md`, derived from the Guo 2026 ethics deep-read; Robin's first customer-facing template produced from a single deep-read, **untracked**, **4-day carry-forward** at 2026-08-20 fetch (was 3-day at 2026-08-19) |
|
||||
| `celvivo_commercial/` | 1 (new as of 2026-08-17 — `1331651_20260630_131201.pdf`, the 6-30 quote PDF migrated into a new folder, **untracked**, **4-day carry-forward** at 2026-08-20 fetch (was 3-day at 2026-08-19) |
|
||||
|
||||
Total ≈ 1,207 deep-read notes on `main` (+2 from the 2026-08-16 Quintard 2024 + Guo 2026 clusters).
|
||||
Review/ zhou2023 computer vision + microfluidics, **untracked** — only
|
||||
@@ -646,9 +665,9 @@ fields still 待补).
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|
||||
- **Quintard 2024 Nat Commun microfluidic vascularized organoid chip (2026-08-16, 7 commits in 48-hour window)** — `obsidian-vault/Literature/Deep-Reads/Organoid/quintard_2024_vasorganoid_chip.md` (189 lines; 4-commit LDR cycle `0fc8db24` adds → `290e9635` -v2 修图床/双 H1/落款 → `24c713de` -v3 Wiki.js 自带图床 6 张图 → `4073abf4` -v4 转发语标题/落款加粗/删 3Brain; Wiki IDs 1719/1720/1722, NocoDB Id 3297). The paper is **the first microfluidic / organ-on-chip platform paper** Robin has deep-read in the 2026-08 window; the platform combines (i) 10-channel parallel microfluidic chips with U-shaped capture sites (300-800 µm adjustable), (ii) fibrin + Matrigel hydrogel layer deposition using Landau-Levich-Bretherton effect, (iii) ~10 s capture efficiency ~100%, (iv) dynamic perfusion 7-30 days with HUVEC + fibroblast co-culture + hiPSC-derived BVO + islet spheroid + lung organoid cross-validation, (v) hierarchical vasculature (37 µm upstream artery-vein + 8 µm BVO capillaries, matching physiological ranges 50-1900 s⁻¹). **Net-new external evidence** in this run (git-repo-1 2026-08-17). The 4-star "与我们的产品" table lists **Mimetas OrganoPlate ⭐⭐⭐⭐** (direct Phaseguide-based vascularized / kidney / intestine organ-on-chip competitor) + **CelVivo ClinoStar ⭐⭐⭐** (upstream workflow step: BVO differentiation day 0-15 needs rotating-wall suspension culture; ClinoStar is the canonical hardware for this stage; the paper's day 15 → chip-on-board handoff is the canonical CelVivo → organ-on-chip workflow) + **Emulate Organ-Chip ⭐⭐⭐** (Colon-Intestine-Liver platform companion). Synthesis routes into `/themes/05-robin-research.md` (新增 by-vendor entry) and `/sources/literature.md` (last-30-days deep-read table). Vendor-anchor mapping: CelVivo-adjacent (workflow upstream) + Mimetas OrganoPlate / Emulate Organ-Chip (organ-on-chip product lane that Robin's portfolio does not currently cover but represents a potential cross-sell if Robin's customers ask "where do I run my CelVivo-matured organoids in a vascularized microenvironment?"). Customer-entry: 药企临床前 (vascularized drug screening) + 微流控 organ-on-chip 平台集成商 (Mimetas / Emulate channel partners) + academic PI (vascular development / diabetes). **Track on next fetch** whether Robin publishes a `/sources/literature-quintard-2024-nat-commun-vasorganoid-chip-deepread.md` synthesis page; the deep-read pipeline currently only carries `liang-2026-celvivo-clinostar-positioning` + `miao-2025-celvivo-clinostar-positioning` + `liu-2026-hd-mea-roadmap-implication` + `sharma-2026-retinal-organoid-mea-cross-sell` — no Quintard synthesis page yet.
|
||||
- **Guo 2026 Front Cell Dev Biol organoid ethics systematic review (2026-08-16, 7 commits in 48-hour window)** — `obsidian-vault/Literature/Deep-Reads/Organoid/guo_2026_organoid_ethical_review.md` (170 lines + 3 真图; 3-commit LDR cycle `2e6f5989` adds → `00f824f2` -v2 修图床 (加 2 张 Wiki.js 自带图) → `a4fa5a32` -v3 补 Fig 1; Wiki ID 1724, NocoDB Id 3298). The paper is **the first organoid-research ethics / IRB systematic review** Robin has deep-read in any window — fills the methodological gap on the IRB-side that the prior clinical-translation evidence (CDE classification + Order No. 818) does not directly cover. The paper structures the IRB review framework as **7 mandatory points** (sample provenance + donor informed consent + data privacy & de-identification + co-culture agency + animal welfare 3R + cross-border regulation + long-term storage & termination); the cross-border table compares China (《人类遗传资源管理条例》+ 《涉及人的生命科学和医学研究伦理审查办法》2023), US (HIPAA + Common Rule + NIH GDS), EU (GDPR + Clinical Trials Regulation 536/2014), Japan, Korea. The 4-star "与我们的产品" table lists **CelVivo ClinoStar ⭐⭐⭐⭐** (clinical-translation IRB compliance — the 7 mandatory points directly apply to ClinoStar customer IRB submissions; **Robin 推广 ClinoStar 给三甲医院时, 可附带本框架作为增值**) + **Mimetas OrganoPlate ⭐⭐⭐⭐** (co-culture ethics — Mimetas 主营类器官 + 免疫细胞共培养, the co-culture agency framework from Guo 2026 point 4 directly applies) + **Emulate Organ-Chip ⭐⭐⭐** (organoid + microfluidic cross-border regulation reference). **Net-new external evidence** in this run (git-repo-1 2026-08-17). Robin translated the paper into a **customer-facing sales ammunition template** at `templates/类器官IRB申请清单.md` (180 lines; 7 mandatory points checklist + 5 customer Q&A + China vs International flow table + 10 attachments + 7 citations; v1.0 dated 2026-08-16, "Robin 8-16 实战沉淀") — see the templates/ entry in the next bullet. Customer-entry: 临床转化型医院 (class A tertiary hospitals running organoid IRB submissions) + 类器官厂家 Robin 培训客户 (the IRB checklist is the canonical "Robin 培训客户 IRB 申请" core material) + academic PI (cross-border collaboration IRB paperwork). **Track on next fetch** whether (a) the templates/ IRB checklist gets committed, (b) the Robin-author attribution in the template is recognized as a wiki-side customer-training artifact, (c) Robin produces a deep-read synthesis page at `/sources/literature-guo-2026-front-cell-dev-biol-organoid-ethics-deepread.md`, and (d) the IRB checklist routes into the existing CelVivo industrial-customers program (which currently lives at `05-Documents/Products/Celvivo/Industrial-Customers/`) as a standard customer-training artifact.
|
||||
- **Review/ subfolder — first entry (2026-08-13, still uncommitted at 2026-08-19, 8-day carry-forward, watchlist signal continuing to weaken)** — `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` is the **first file in a new `Review/` subfolder** under `04-Literature/Deep-Reads/`. The file is **untracked** at the 2026-08-19 fetch (Robin has not yet committed it — same state as the 2026-08-13 + 2026-08-15 + 2026-08-17 + 2026-08-18 fetches, **0 progress in the 2026-08-13 → 2026-08-19 144-hour window**, **6 consecutive fetches silent on the file**). **Watchlist signal continuing to weaken at this fetch**: per the 2026-08-15 watchlist-trigger rubric ("if the file remains uncommitted at the next fetch (2026-08-17 or later), the structural signal weakens"), the `Review/` subfolder at the 2026-08-19 fetch is **still single-entry, still untracked** — the structural signal **continues to weaken** at this fetch (**8-day carry-forward** with no commit, no follow-up paper landed in the subfolder across **6 consecutive fetches**). The `Review/` subfolder is more likely to be a one-off than a recurring pattern. The file should either be committed on a future fetch (which would re-strengthen the signal) or remain untracked indefinitely (which would confirm the one-off interpretation). No synthesis routes until the file is committed.
|
||||
- **`templates/` subfolder — first entry (2026-08-16, NEW this run)** — `templates/类器官IRB申请清单.md` (180 lines, mtime 2026-08-16, untracked) is the **first file in a new `templates/` directory** at the vault root. The file is Robin's **first customer-facing sales ammunition template produced from a single deep-read** (the Guo 2026 IRB ethics systematic review). Content: 7 mandatory IRB review points checklist (样本来源/知情同意/数据隐私/共培养主体性/3R 动物福利/跨境监管/长期保存与终止使用) + 5 customer Q&A ("类器官研究要不要 IRB 申请?" / "类器官共培养产品怎么申请 IRB?" / "类器官跨境研究怎么报?" / "3R 原则怎么写?" / "类器官 + 免疫细胞共培养 = CAR-T 体外培养, 算不算新生物体? 伦理上算什么?") + China vs International flow comparison table + 10-row 申请附件清单 + 7 references (Guo 2026 + ISSCR 2021 + OHRP 2016 + GDPR 2018 + China 2023 + China 2019 + Cambridge 2020). The template's `version: v1.0 (2026-08-16, Robin 8-16 实战沉淀)` and `Robin 业务定位: 类器官厂家给三甲医院 IRB 申请的标准模板 + Robin 客户培训材料核心` framing makes it explicit that this is the canonical "Robin 培训客户 IRB 申请" core material. **Structural significance**: the `templates/` directory is new — none of the existing top-level folders (`01-Active-Sales/` / `02-Clients/` / `02-Active-Deals/` / `02-Contacts/` / `03-Product/` / `03-Resources/` / `04-Literature/` / `05-Documents/` / `06-Sales/` / `99-Templates/` / `memory/`) provides a vendor-agnostic customer-training-artifact slot at the vault root. The Obsidian vault already has `99-Templates/` for reusable Obsidian templates (note templates, daily-report templates — per `99-Templates/` size hint 14 .md), but the new `templates/` directory is **for customer-facing sales ammunition**, not Obsidian note templates — a different artifact type. The naming convention overlaps with `99-Templates/` and may need disambiguation; Robin's intent (per the file header) is for this `templates/` to be the **canonical customer-training artifact directory**, distinct from `99-Templates/` Obsidian-note templates. **Customer-entry scenarios** called out in the template: (a) 类器官厂家研发负责人 = IRB 申请准备, (b) Robin 客户开发 = 培训客户 IRB 申请核心材料, (c) 医院 IRB 委员会 = 类器官研究 IRB 审查标准参考, (d) 学术合作方 = 跨境合作时多国法规差异对照. **Carry-forward status** (2026-08-19): untracked, **3-day carry-forward** since first observation (2026-08-17 fetch), future-commit candidate. **Track on next fetch** whether (a) Robin commits the file to `main`, (b) more templates land in the directory (extending the customer-training-artifact slot), (c) the `templates/` and `99-Templates/` naming overlap gets resolved (rename / docs / conventions). Synthesis routes into `/themes/05-robin-research.md` (sales ammunition pipeline section).
|
||||
- **`celvivo_commercial/` subfolder — first entry (2026-08-17, NEW this run)** — `celvivo_commercial/1331651_20260630_131201.pdf` (56 KB PDF, mtime 2026-08-17, untracked) is the **first file in a new `celvivo_commercial/` directory** at the vault root. The PDF is the existing 6-30 quote PDF that Robin migrated into a new folder. The file is **a quote PDF**, not a synthesis target — the on-disk evidence is the existing 6-30 quote document that already exists in `05-Documents/Products/Celvivo/Industrial-Customers/` (per the 2026-08-15 synthesis-policy section above, "commercial docs (8 files: Exhibit 1 Price Book / Exhibit 3 SuperUser certification / Huibai demo discount agreement / 惠百 PO 盖章版 / Celvivo Distribution Agreement 2026 Huibai Bio / 1331651_20260630_131201 (6-30 quote) / Packing Slip Ordre 726_1 / Packing Slip Ordre 726_2)"). **Structural significance**: the `celvivo_commercial/` directory is new — Robin has migrated the 6-30 quote out of wherever it was previously (presumably a working folder or `05-Documents/Products/Celvivo/` deep path) into a top-level dedicated directory. **The migration is unfinished** — only 1 file in the new directory; if Robin intends the directory to consolidate all 8 commercial docs from `05-Documents/Products/Celvivo/Industrial-Customers/`, the other 7 files (Exhibit 1 Price Book / Exhibit 3 SuperUser certification / Huibai demo discount agreement / 惠百 PO 盖章版 / Celvivo Distribution Agreement 2026 / Packing Slip Ordre 726_1 / Packing Slip Ordre 726_2) should eventually land here too. **No synthesis routes** until Robin commits the file or migrates more docs into the directory. Carry-forward status (2026-08-19): untracked, single-entry, **3-day carry-forward** since first observation (2026-08-17 fetch), future-commit candidate. Track on next fetch whether (a) the file gets committed, (b) more commercial docs migrate into the directory.
|
||||
- **Review/ subfolder — first entry (2026-08-13, still uncommitted at 2026-08-20, 9-day carry-forward, watchlist signal continuing to weaken)** — `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` is the **first file in a new `Review/` subfolder** under `04-Literature/Deep-Reads/`. The file is **untracked** at the 2026-08-20 fetch (Robin has not yet committed it — same state as the 2026-08-13 + 2026-08-15 + 2026-08-17 + 2026-08-18 + 2026-08-19 fetches, **0 progress in the 2026-08-13 → 2026-08-20 168-hour window**, **7 consecutive fetches silent on the file**). **Watchlist signal continuing to weaken at this fetch**: per the 2026-08-15 watchlist-trigger rubric ("if the file remains uncommitted at the next fetch (2026-08-17 or later), the structural signal weakens"), the `Review/` subfolder at the 2026-08-20 fetch is **still single-entry, still untracked** — the structural signal **continues to weaken** at this fetch (**9-day carry-forward** with no commit, no follow-up paper landed in the subfolder across **7 consecutive fetches**). The `Review/` subfolder is more likely to be a one-off than a recurring pattern. The file should either be committed on a future fetch (which would re-strengthen the signal) or remain untracked indefinitely (which would confirm the one-off interpretation). No synthesis routes until the file is committed.
|
||||
- **`templates/` subfolder — first entry (2026-08-16, NEW this run)** — `templates/类器官IRB申请清单.md` (180 lines, mtime 2026-08-16, untracked) is the **first file in a new `templates/` directory** at the vault root. The file is Robin's **first customer-facing sales ammunition template produced from a single deep-read** (the Guo 2026 IRB ethics systematic review). Content: 7 mandatory IRB review points checklist (样本来源/知情同意/数据隐私/共培养主体性/3R 动物福利/跨境监管/长期保存与终止使用) + 5 customer Q&A ("类器官研究要不要 IRB 申请?" / "类器官共培养产品怎么申请 IRB?" / "类器官跨境研究怎么报?" / "3R 原则怎么写?" / "类器官 + 免疫细胞共培养 = CAR-T 体外培养, 算不算新生物体? 伦理上算什么?") + China vs International flow comparison table + 10-row 申请附件清单 + 7 references (Guo 2026 + ISSCR 2021 + OHRP 2016 + GDPR 2018 + China 2023 + China 2019 + Cambridge 2020). The template's `version: v1.0 (2026-08-16, Robin 8-16 实战沉淀)` and `Robin 业务定位: 类器官厂家给三甲医院 IRB 申请的标准模板 + Robin 客户培训材料核心` framing makes it explicit that this is the canonical "Robin 培训客户 IRB 申请" core material. **Structural significance**: the `templates/` directory is new — none of the existing top-level folders (`01-Active-Sales/` / `02-Clients/` / `02-Active-Deals/` / `02-Contacts/` / `03-Product/` / `03-Resources/` / `04-Literature/` / `05-Documents/` / `06-Sales/` / `99-Templates/` / `memory/`) provides a vendor-agnostic customer-training-artifact slot at the vault root. The Obsidian vault already has `99-Templates/` for reusable Obsidian templates (note templates, daily-report templates — per `99-Templates/` size hint 14 .md), but the new `templates/` directory is **for customer-facing sales ammunition**, not Obsidian note templates — a different artifact type. The naming convention overlaps with `99-Templates/` and may need disambiguation; Robin's intent (per the file header) is for this `templates/` to be the **canonical customer-training artifact directory**, distinct from `99-Templates/` Obsidian-note templates. **Customer-entry scenarios** called out in the template: (a) 类器官厂家研发负责人 = IRB 申请准备, (b) Robin 客户开发 = 培训客户 IRB 申请核心材料, (c) 医院 IRB 委员会 = 类器官研究 IRB 审查标准参考, (d) 学术合作方 = 跨境合作时多国法规差异对照. **Carry-forward status** (2026-08-20): untracked, **4-day carry-forward** since first observation (2026-08-17 fetch — was 3-day at the 2026-08-19 fetch), future-commit candidate. **Track on next fetch** whether (a) Robin commits the file to `main`, (b) more templates land in the directory (extending the customer-training-artifact slot), (c) the `templates/` and `99-Templates/` naming overlap gets resolved (rename / docs / conventions). Synthesis routes into `/themes/05-robin-research.md` (sales ammunition pipeline section).
|
||||
- **`celvivo_commercial/` subfolder — first entry (2026-08-17, NEW this run)** — `celvivo_commercial/1331651_20260630_131201.pdf` (56 KB PDF, mtime 2026-08-17, untracked) is the **first file in a new `celvivo_commercial/` directory** at the vault root. The PDF is the existing 6-30 quote PDF that Robin migrated into a new folder. The file is **a quote PDF**, not a synthesis target — the on-disk evidence is the existing 6-30 quote document that already exists in `05-Documents/Products/Celvivo/Industrial-Customers/` (per the 2026-08-15 synthesis-policy section above, "commercial docs (8 files: Exhibit 1 Price Book / Exhibit 3 SuperUser certification / Huibai demo discount agreement / 惠百 PO 盖章版 / Celvivo Distribution Agreement 2026 Huibai Bio / 1331651_20260630_131201 (6-30 quote) / Packing Slip Ordre 726_1 / Packing Slip Ordre 726_2)"). **Structural significance**: the `celvivo_commercial/` directory is new — Robin has migrated the 6-30 quote out of wherever it was previously (presumably a working folder or `05-Documents/Products/Celvivo/` deep path) into a top-level dedicated directory. **The migration is unfinished** — only 1 file in the new directory; if Robin intends the directory to consolidate all 8 commercial docs from `05-Documents/Products/Celvivo/Industrial-Customers/`, the other 7 files (Exhibit 1 Price Book / Exhibit 3 SuperUser certification / Huibai demo discount agreement / 惠百 PO 盖章版 / Celvivo Distribution Agreement 2026 / Packing Slip Ordre 726_1 / Packing Slip Ordre 726_2) should eventually land here too. **No synthesis routes** until Robin commits the file or migrates more docs into the directory. Carry-forward status (2026-08-20): untracked, single-entry, **4-day carry-forward** since first observation (2026-08-17 fetch — was 3-day at the 2026-08-19 fetch), future-commit candidate. Track on next fetch whether (a) the file gets committed, (b) more commercial docs migrate into the directory.
|
||||
- **2026-08-15 sources-sync bug — count-data wipe (operational)** — the `2507925e27b83b4f9d2e6f3b9c939d081a90f9f2` `chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-15)` commit at 2026-08-15 +0800 02:31 committed **empty count values** for NocoDB / Wiki.js / RAGFlow (SeaFile was already empty so the commit was a no-op there): (a) NocoDB: 6614 → **0** total records, with all 13 per-table counts (brain_organoid_literature / intestinal_organoid_literature / Celvivo_literature / cardiac_organoid_literature / cancer_organoid_literature / liver_organoid_literature / other_organoid_literature / kidney_organoid_literature / retinal_organoid_literature / Cellink_literature / organoid_literature_old / lung_organoid_literature / 3Brain_literature) cleared to empty cells; (b) SeaFile: libraries table unchanged (was empty in `1737454` already — a separate, older cron issue not introduced by `2507925`); (c) Wiki.js: 83 → **0** unique pages, ID range 22..1704 → **0..0**, Locale 分布 → empty, Top-level 路径分布 → empty; (d) RAGFlow: landing 200 → **000**, `/api/v1/health` 404 → **000**, `/api/v1/datasets` 401 → **000**. The header lines on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page still report `上次同步: 2026-08-14T18:30:42Z` (the prior successful sync timestamp), but the body count values are wiped. **Probable root cause**: the auto-source-sync CRON job ran but the underlying NocoDB / Wiki.js / RAGFlow API calls failed (likely the same operational issue already documented on `/sources/web-search.md` and `/sources/README.md` — runtime registry disagreement on `enabled: true` vs. disabled); the script committed the empty values instead of skipping the commit on failure. **Impact**: 3 source pages now show misleading zero/null values (NocoDB / Wiki.js / RAGFlow); Tavily / HN / git-repo synthesis is unaffected. **Recovery**: the wiped data is recoverable from the prior wiki commit (`git show 1737454:sources/nocodb.md` etc. will restore the pre-wipe state). This run restored the wiped data on all 3 affected pages (plus an operational note documenting the bug) so the wiki is internally consistent again. **Wiki-synthesis concern**: **none** — the synthesis layer (themes / commitments / open-questions / personal-logistics) is independent of the source-page counters. **Operational concern**: **yes** — the auto-source-sync job should (a) check connectivity before committing, (b) skip the commit on API failure rather than committing empty values, or (c) preserve the prior counter values when a fresh pull returns null/empty. Recorded for traceability here + on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page.
|
||||
- **Liang 2026 liver organoid fibrosis platform (2026-08-12)** — `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (170 lines; `[[MOC-类器官与3D培养]]` already names this paper via `related:` back-link). The paper is **the net-new external evidence** this run (git-repo-1 2026-08-12) brought into the vault; see synthesis at `/themes/01-organoid-equipment.md` § CelVivo evidence (added 2026-08-12) and `/commitments.md` `liang-2026-celvivo-clinostar-positioning`. Single-paper LDR cycle: 4 commits (`e542c977` → `8699a154` → `aacba7aa` → `297f106d`) walked Robin's standard 3-stage SOP on the same file (186 lines → 105+/122- page 946 rewrite → page 934 修齐 micro-revisions). The 4-star "与我们的产品" table on the paper lists **CelVivo ClinoStar ⭐⭐⭐⭐** (P1-P10 长程扩增对应旋转培养 30+ 天无剪切; HSC 静止态在模拟微重力下 7+ 天维持) + **CelVivo ClinoReactor ⭐⭐⭐⭐** (单组织 3 轨道分通道灌流; TGFβ 时间程序精确切换) — **parallel CelVivo ClinoStar rating 5 to Miao 2025 v2's ClinoStar rating 5** from the 2026-08-08 flywheel-sync, but for liver organoid (long-term maturation + fibrosis modeling) rather than lung organoid (vascularization). 7 SeaFile Fig (Fig1-7) + 4-paper 参考文献 (Huch 2013 / Huch 2015 / Clevers 2016). Customer-entry: 药企临床前 (抗纤维化药筛) + 临床肝活检中心 (1-2 mg → 3 周药敏) + 学术 PI (2D vs 3D 旋转 efficiency). **MOC linkage**: the paper's `related:` field already names `[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) — confirming the MOC pattern is in active use on real deep-reads.
|
||||
- **CelVivo industrial customers program** — a dedicated subfolder under
|
||||
@@ -731,7 +750,84 @@ fields still 待补).
|
||||
|
||||
## Synthesis policy for this source
|
||||
|
||||
- **This run (2026-08-19, git-repo-1 18:08Z):** **0 new vault commits**
|
||||
- **This run (2026-08-20, git-repo-1 18:09Z):** **0 new vault commits**
|
||||
in the 2026-08-19T18:08Z → 2026-08-20T18:09Z 24-hour window — the
|
||||
vault HEAD is **unchanged at `a4fa5a32`** for the **4th consecutive
|
||||
fetch** (the 2026-08-16 Quintard 2024 Nat Commun 4-commit LDR cycle
|
||||
+ Guo 2026 Front Cell Dev Biol 3-commit LDR cycle remain the most
|
||||
recent vault activity, **4 calendar days stale** at this fetch).
|
||||
**0 new vault mtime changes** — the 2 untracked directories
|
||||
(`celvivo_commercial/` + `templates/`) and the 23+ untracked files
|
||||
from the 2026-08-17T18:09Z fetch carry forward unchanged. The
|
||||
`Review/zhou2023_computer_vision_microfluidics.md` first-entry in the
|
||||
new `Review/` subfolder is **9-day carry-forward** at this fetch
|
||||
(uncommitted since 2026-08-11); the structural signal for `Review/`
|
||||
continues to weaken per the Notable-entity entry (the subfolder has
|
||||
been a single-entry watchlist since 2026-08-13, now **7 fetches
|
||||
silent**). Wiki-side: **2 new automated wiki commits** landed in
|
||||
the 24-hour window — `a44f284` chore: daily update 2026-08-20
|
||||
(2026-08-20 02:23 +0800) + `bd30339` chore(sources): refresh
|
||||
NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-20,
|
||||
2026-08-20 02:30 +0800) — advancing wiki HEAD from `dcb53a2`
|
||||
(2026-08-19T18:08Z fetch) to `bd30339`. Both commits are routine
|
||||
auto-orchestration: (a) the `a44f284` daily update carried the
|
||||
synthesis-layer edits from the prior HN-1 2026-08-20T18:00Z +
|
||||
web-search-1 2026-08-20 (skipped) + git-repo-1 2026-08-19T18:08Z
|
||||
runs; (b) the `bd30339` sources-sync re-applied the count-data wipe
|
||||
pattern on NocoDB / SeaFile / Wiki.js / RAGFlow for the **sixth**
|
||||
consecutive sources-sync (after 2026-08-15 `2507925` + 2026-08-16
|
||||
`997b648` + 2026-08-17 `be49285` + 2026-08-18 `1fc73ae` +
|
||||
2026-08-19 `dcb53a2`).
|
||||
**No new external evidence** in this run (vault silent), **no
|
||||
new theme row**, **no new commitment row**, **no new open-question
|
||||
row**, **no new personal-logistics item** — the synthesis layer
|
||||
is unchanged. Wiki edits this run: (a) `/sources/git-repo.md` (this
|
||||
page) — refreshed frontmatter HEAD pointers (vault HEAD unchanged at
|
||||
`a4fa5a32`, wiki HEAD `dcb53a2` → `bd30339`, tags + `2026-08-20`,
|
||||
timestamp → `2026-08-20T18:09:15Z`), refreshed the Connector /
|
||||
State section to the new `2026-08-20T18-09-15-122Z` raw manifest,
|
||||
refreshed the obsidian-vault working-tree-status section to
|
||||
2026-08-20 (0 new commits, 0 new mtime changes, untracked set
|
||||
unchanged; `Review/` 8-day → 9-day + `templates/` + `celvivo_commercial/`
|
||||
3-day → 4-day carry-forward), refreshed the openwiki-wiki
|
||||
working-tree-status section to 2026-08-20 (2 new automated wiki
|
||||
commits + the carry-forward 10 uncommitted synthesis-layer edits),
|
||||
added 2 new entries at the top of the Recent-commits-for-wiki
|
||||
table (`bd30339` sources-sync 2026-08-20 + `a44f284` daily update
|
||||
2026-08-20), refreshed the Summary-of-last-48-hours table to add
|
||||
the 2026-08-19T18:08Z → 2026-08-20T18:09Z window data (0 vault
|
||||
commits / 2 wiki commits / operational row noting the **sixth**
|
||||
consecutive sources-sync re-applying the count-data wipe pattern),
|
||||
refreshed the Notable-entity `Review/` entry (8-day → 9-day carry-
|
||||
forward, **6 fetches silent** → **7 fetches silent**) + bumped
|
||||
`templates/` + `celvivo_commercial/` 3-day → 4-day, refreshed
|
||||
the Synthesis-policy section with this run's delta summary;
|
||||
(b) `/themes/05-robin-research.md` — vault-snapshot metadata
|
||||
refreshed (fetch timestamp → `2026-08-20T18:09:15Z`, raw-manifest path
|
||||
→ the new `2026-08-20T18-09-15-122Z` manifest); the vault HEAD
|
||||
pointer stays `a4fa5a32` (unchanged across the 2026-08-17 +
|
||||
2026-08-18 + 2026-08-19 + 2026-08-20 fetches); `Review/`
|
||||
8-day → 9-day carry-forward; `Templates/` + `CelVivo-commercial/`
|
||||
3-day → 4-day; (c) `/quickstart.md` — added the "Latest update
|
||||
— git-repo-1 (2026-08-20T18:09Z)" paragraph; updated the Backlog
|
||||
git-repo entry to reflect the new wiki HEAD `bd30339` + 2 new
|
||||
automated wiki commits + the carry-forward 10 uncommitted files +
|
||||
the **sixth** consecutive sources-sync note; (d) `/sources/README.md`
|
||||
— refreshed Active connectors Git repo row + Connector roll Git
|
||||
repo row to mention the 2026-08-20 18:09 UTC fetch + the **sixth**
|
||||
consecutive sources-sync. **No `/themes.md` row change, no
|
||||
`/commitments.md` row, no `/open-questions.md` row, no
|
||||
`/personal-logistics.md` item** — the vault delta is empty and the
|
||||
wiki delta is automated maintenance only. The "vault is silent on
|
||||
a 24-hour window" pattern continues to be normal cadence for Robin's
|
||||
workflow (the 2026-08-13 + 2026-08-15 + 2026-08-18 + 2026-08-19
|
||||
fetches were also 0-new-vault-commits daily-cycle follow-ups; the
|
||||
2026-08-20 fetch makes it **5 consecutive 0-new-vault-commit
|
||||
fetches**). The synthesis layer (themes / commitments /
|
||||
open-questions / personal-logistics) is independent of the wiki-side
|
||||
automated maintenance commits.
|
||||
|
||||
- **Previous run (2026-08-19, git-repo-1 18:08Z):** **0 new vault commits**
|
||||
in the 2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window — the
|
||||
vault HEAD is **unchanged at `a4fa5a32`** for the **3rd consecutive
|
||||
fetch** (the 2026-08-16 Quintard 2024 Nat Commun 4-commit LDR cycle
|
||||
@@ -796,7 +892,7 @@ fields still 待补).
|
||||
a 24-hour window" pattern continues to be normal cadence for Robin's
|
||||
workflow (the 2026-08-13 + 2026-08-15 + 2026-08-18 fetches were
|
||||
also 0-new-vault-commits daily-cycle follow-ups; the 2026-08-19
|
||||
fetch makes it **4 consecutive 0-new-vault-commit fetches**).
|
||||
fetch made it **4 consecutive 0-new-vault-commit fetches**).
|
||||
The synthesis layer (themes / commitments / open-questions /
|
||||
personal-logistics) is independent of the wiki-side automated
|
||||
maintenance commits.
|
||||
|
||||
+39
-4
File diff suppressed because one or more lines are too long
+1
-1
@@ -4,7 +4,7 @@
|
||||
- [Agents 代理商档案索引 — 跨 agent CRM 同步](agents.md) - Cross-agent index of the Obsidian vault 02-Clients/Agents/* profiles (which agents Robin is actively working with, mapped by vendor product line). Base identity only — sensitive fields (phone / WeChat / email / end-customer list / opportunity value) live only in the private vault. Updated 2026-08-07 with _known_associations.md product-line → agent → end-customer mapping.
|
||||
- [全国经销商地图 (2026-08-07 时点)](distributors-china-2026.md) - Compact index of Robin's 2026-08-07 China distributor baseline (259 dealers across 7 regions, replacing 261 in the 2026-07-24 baseline) plus the new product-association index _known_associations.md. Surfaces CelVivo ClinoStar → 济南成全 + FemtoBiomed CellShot → 9X Bio → TriArm Therapeutics chain. Routes pricing-sensitive fields to the private Obsidian vault per /sources/agents.md privacy rule.
|
||||
- [飞书邮箱 (Robin customer mailbox)](feishu-mail.md) - Planned cross-agent mailbox sync target for Robin's Feishu (飞书) mailbox (imap.feishu.cn:993 / imap.larksuite.com:993) — would let MiniMax code / Hermes recall 'what did Robin last discuss with customer X' from email metadata + summaries. Not yet provisioned — IMAP credentials + update script + crontab still pending Robin setup; this page documents the planned configuration and the sync policy that will be applied once provisioned.
|
||||
- [Git repo — evidence index (Obsidian vault, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD a4fa5a32, 2026-08-16, **0 new vault commits in the 2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window — vault is silent for the 3rd consecutive fetch**) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD dcb53a2, 2026-08-19, **2 new automated wiki commits in the 2026-08-18T18:10Z → 2026-08-19T18:08Z window: `7e904ec` daily update 2026-08-19 + `dcb53a2` sources-sync 2026-08-19 — the fifth consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern**). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
|
||||
- [Git repo — evidence index (Obsidian vault, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD a4fa5a32, 2026-08-16, **0 new vault commits in the 2026-08-19T18:08Z → 2026-08-20T18:09Z 24-hour window — vault is silent for the 4th consecutive fetch after the 2026-08-16 Quintard + Guo cluster**) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD bd30339, 2026-08-20, **2 new automated wiki commits in the 2026-08-19T18:08Z → 2026-08-20T18:09Z window: `a44f284` daily update 2026-08-20 + `bd30339` sources-sync 2026-08-20 — the sixth consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern**). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
|
||||
- [Hacker News — evidence index](hackernews.md) - Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items.
|
||||
- [文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件)](ldr-report-template.md) - Master template for Robin's literature-deep-read (LDR) pipeline — consolidates 4 literature skills (`literature-deep-read` / `research` / `review` / `curation-for-sales`) into a single 8-rule + 3-trigger + 5-section "真适合浏览" report format. Synthesized from 4-27 SOP范本 + 7-27 实战 lessons (Tasevska / Raji / Bosnjakovic). Triggers "精读吧" / "发 wikijs" / "入库" / "A" / Id/DOI/PMID/PDF signals into 4-step精简 or 8-step完整 flows. PDF全文必传 + PyMuPDF xref去重 + 9项强制 + SeaFile hostname `fb.biokingdom.top` + NocoDB v1 JSON + 3张真图 + `journal-year-topic` 报告路径.
|
||||
- [Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)](literature-cel-bosnjakovic-2025-pah-deepread.md) - Deep-read synthesis of Bosnjakovic A et al. 2025 bioRxiv preprint (DOI 10.1101/2025.07.10.663939v1, 2025-07-10) — 21-day mature HepG2 3D spheroids with graded non-cytotoxic BaP + BBF (PAH代表物) exposure for metabolomics biomarker discovery. Robin's connection: 3D spheroid protocol maps directly onto CelVivo ClinoStar dynamic culture; supports PAH exposure metabolomics positioning for hepatotoxicity / NAFLD modeling applications. 精读 2026-07-27.
|
||||
|
||||
@@ -1,3 +1,9 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "NocoDB 文献库索引 — 跨 agent 数据层"
|
||||
openwiki_generated: true
|
||||
---
|
||||
|
||||
# NocoDB 文献库索引 — 跨 agent 数据层
|
||||
|
||||
> 数据源: NocoDB 13 个文献库 + 2 个公司库 (实时,每次 OpenWiki cron 跑时更新)
|
||||
|
||||
@@ -1,3 +1,9 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "RAGFlow 全文检索索引 (Robin KB system)"
|
||||
openwiki_generated: true
|
||||
---
|
||||
|
||||
# RAGFlow 全文检索索引 (Robin KB system)
|
||||
|
||||
> 数据源: RAGFlow (http://10.10.10.254:9980/) 14 个 KB 全文检索结果
|
||||
|
||||
@@ -1,3 +1,9 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "SeaFile 大文件存储索引"
|
||||
openwiki_generated: true
|
||||
---
|
||||
|
||||
# SeaFile 大文件存储索引
|
||||
|
||||
> 数据源: SeaFile (http://10.10.10.254:9898/) 共 N 个资料库
|
||||
|
||||
+18
-6
@@ -2,12 +2,20 @@
|
||||
type: "Reference"
|
||||
title: "Web Search Evidence"
|
||||
description: "Compact, source-backed evidence and ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news."
|
||||
tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-08-12, 2026-08-15, 2026-08-16, 2026-08-17, 2026-08-18, 2026-08-19]
|
||||
tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-08-12, 2026-08-15, 2026-08-16, 2026-08-17, 2026-08-18, 2026-08-19, 2026-08-20]
|
||||
---
|
||||
|
||||
# Web Search Evidence
|
||||
|
||||
> Connector: `web-search-1` (Tavily). This page records compact, relevant evidence from Tavily pulls; search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC. The 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, and 2026-08-19 update attempts were skipped because the connector is disabled and `TAVILY_API_KEY` is not present; no new 24-hour evidence was available on any of these seven runs.
|
||||
> Connector: `web-search-1` (Tavily). This page records compact, relevant evidence from Tavily pulls; search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC. The 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, 2026-08-19, and 2026-08-20 update attempts were skipped because the connector is disabled and `TAVILY_API_KEY` is not present; no new 24-hour evidence was available on any of these eight runs.
|
||||
|
||||
## 2026-08-20 attempted update — skipped
|
||||
|
||||
- **Status:** skipped. `web-search-1` is not enabled; the connector reports that `enabled=true` must be set in `~/.openwiki/connectors/web-search/config.json`.
|
||||
- **Authentication:** `TAVILY_API_KEY` is not present, so no Tavily request was made.
|
||||
- **Coverage:** no raw data files were written for this attempted 24-hour window. The nightly searxng-fallback slot (`~/.openwiki/connectors/web-search/raw/2026-08-19T18-35-03-searxng-fallback/`) is also empty — no web-search evidence of any kind landed in the 24-hour window. No new CelVivo, 3Brain, Cellink, or organoid findings were available for synthesis; the latest successful pull remains 2026-08-03 18:08 UTC.
|
||||
- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md` from this source attempt.
|
||||
- **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, and 2026-08-19 runs hit the same blocker; this is the **eighth consecutive skip on the same code path**. To resolve: set `TAVILY_API_KEY` in the OpenWiki runtime environment and ensure the runtime registry refreshes the connector's enabled state.
|
||||
|
||||
## 2026-08-19 attempted update — skipped
|
||||
|
||||
@@ -15,7 +23,7 @@ tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-08-
|
||||
- **Authentication:** `TAVILY_API_KEY` is not present, so no Tavily request was made.
|
||||
- **Coverage:** no raw data files were written for this attempted 24-hour window. The nightly searxng-fallback slot (`~/.openwiki/connectors/web-search/raw/2026-08-18T18-35-03-searxng-fallback/`) is also empty — no web-search evidence of any kind landed in the 24-hour window. No new CelVivo, 3Brain, Cellink, or organoid findings were available for synthesis; the latest successful pull remains 2026-08-03 18:08 UTC.
|
||||
- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md` from this source attempt.
|
||||
- **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, and 2026-08-18 runs hit the same blocker; this is the **seventh consecutive skip on the same code path**. To resolve: set `TAVILY_API_KEY` in the OpenWiki runtime environment and ensure the runtime registry refreshes the connector's enabled state.
|
||||
- **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, and 2026-08-18 runs hit the same blocker; the 2026-08-20 run hit the same blocker too. This was the **seventh consecutive skip on the same code path at the time of the 2026-08-19 attempt** (and the eighth skip including the 2026-08-20 follow-up). To resolve: set `TAVILY_API_KEY` in the OpenWiki runtime environment and ensure the runtime registry refreshes the connector's enabled state.
|
||||
|
||||
## 2026-08-18 attempted update — skipped
|
||||
|
||||
@@ -23,7 +31,7 @@ tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-08-
|
||||
- **Authentication:** `TAVILY_API_KEY` is not present, so no Tavily request was made.
|
||||
- **Coverage:** no raw data files were written for this attempted 24-hour window. The nightly searxng-fallback slot (`~/.openwiki/connectors/web-search/raw/2026-08-17T18-35-03-searxng-fallback/`) is also empty — no web-search evidence of any kind landed in the 24-hour window. No new CelVivo, 3Brain, Cellink, or organoid findings were available for synthesis; the latest successful pull remains 2026-08-03 18:08 UTC.
|
||||
- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md` from this source attempt.
|
||||
- **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, and 2026-08-17 runs hit the same blocker; the 2026-08-19 run hit the same blocker too. This was the **sixth consecutive skip on the same code path at the time of the 2026-08-18 attempt** (and the seventh skip including the 2026-08-19 follow-up).
|
||||
- **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, and 2026-08-17 runs hit the same blocker; the 2026-08-19 and 2026-08-20 runs hit the same blocker too. This was the **sixth consecutive skip on the same code path at the time of the 2026-08-18 attempt** (and the eighth skip including the 2026-08-19 and 2026-08-20 follow-ups).
|
||||
|
||||
## 2026-08-17 attempted update — skipped
|
||||
|
||||
@@ -31,7 +39,7 @@ tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-08-
|
||||
- **Authentication:** `TAVILY_API_KEY` is not present, so no Tavily request was made.
|
||||
- **Coverage:** no raw data files were written for this attempted 24-hour window. The nightly searxng-fallback slot (`~/.openwiki/connectors/web-search/raw/2026-08-16T18-35-03-searxng-fallback/`) is also empty — no web-search evidence of any kind landed in the 24-hour window. No new CelVivo, 3Brain, Cellink, or organoid findings were available for synthesis; the latest successful pull remains 2026-08-03 18:08 UTC.
|
||||
- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md` from this source attempt.
|
||||
- **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08, 2026-08-10, 2026-08-12, and 2026-08-15 runs hit the same blocker; the 2026-08-18 and 2026-08-19 runs hit the same blocker too. This was the **fifth consecutive skip on the same code path at the time of the 2026-08-17 attempt** (and the seventh skip including the 2026-08-18 and 2026-08-19 follow-ups).
|
||||
- **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08, 2026-08-10, 2026-08-12, and 2026-08-15 runs hit the same blocker; the 2026-08-18, 2026-08-19, and 2026-08-20 runs hit the same blocker too. This was the **fifth consecutive skip on the same code path at the time of the 2026-08-17 attempt** (and the eighth skip including the 2026-08-18, 2026-08-19, and 2026-08-20 follow-ups).
|
||||
|
||||
## 2026-08-15 attempted update — skipped
|
||||
|
||||
@@ -39,7 +47,7 @@ tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-08-
|
||||
- **Authentication:** `TAVILY_API_KEY` is not present, so no Tavily request was made.
|
||||
- **Coverage:** no raw data files were written for this attempted 24-hour window. No new CelVivo, 3Brain, Cellink, or organoid findings were available for synthesis; the latest successful pull remains 2026-08-03 18:08 UTC.
|
||||
- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md` from this source attempt.
|
||||
- **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08, 2026-08-10, and 2026-08-12 runs hit the same blocker; the 2026-08-17, 2026-08-18, and 2026-08-19 runs hit the same blocker too. This was the fourth consecutive skip on the same code path at the time of the 2026-08-15 attempt (and the seventh skip including the 2026-08-17, 2026-08-18, and 2026-08-19 follow-ups).
|
||||
- **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08, 2026-08-10, and 2026-08-12 runs hit the same blocker; the 2026-08-17, 2026-08-18, 2026-08-19, and 2026-08-20 runs hit the same blocker too. This was the fourth consecutive skip on the same code path at the time of the 2026-08-15 attempt (and the eighth skip including the 2026-08-17, 2026-08-18, 2026-08-19, and 2026-08-20 follow-ups).
|
||||
|
||||
## 2026-08-12 attempted update — skipped
|
||||
|
||||
@@ -604,3 +612,7 @@ ion commitment. No new commitment; existing commitment Notes are extended.
|
||||
- **Operational note for the connector:** Tavily is back online after a 3-day outage streak. The pull 8 / pull 9 / pull 10 advice to check `TAVILY_API_KEY`, Tavily status, and rate-limit posture no longer applies — the lane is functional again. No connector-side configuration change is required.
|
||||
- **Coverage:** fetched `2026-08-03T18:08:50.866Z`; 10 queries; raw `~/.openwiki/connectors/web-search/raw/2026-08-03T18-07-31-803Z/web-search-results.json`; instance `web-search-1`.
|
||||
queries; raw `~/.openwiki/connectors/web-search/raw/2026-08-03T18-07-31-803Z/web-search-results.json`; instance `web-search-1`.
|
||||
.
|
||||
h-1`.
|
||||
penwiki/connectors/web-search/raw/2026-08-03T18-07-31-803Z/web-search-results.json`; instance `web-search-1`.
|
||||
h-1`.
|
||||
|
||||
@@ -1,3 +1,9 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "Wiki.js 索引 — 跨 agent 文档发布层"
|
||||
openwiki_generated: true
|
||||
---
|
||||
|
||||
# Wiki.js 索引 — 跨 agent 文档发布层
|
||||
|
||||
> 数据源: Wiki.js (http://10.10.10.254:3000/graphql) Biokingdom 实例
|
||||
|
||||
+10
-10
@@ -2,8 +2,8 @@
|
||||
type: "Reference"
|
||||
title: "Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)"
|
||||
description: "Synthesis page for Robin's personal research portfolio — Obsidian vault + literature deep-read pipeline + sales ammunition + China distributor map + active CRM profiles + work-rhythm snapshots. Output routes into vendor themes 01 (organoid-equipment) and 02 (bioprinting)."
|
||||
tags: [theme, research, vault, deep-read, sales, crm, life-sciences, 2026-08-19, 2026-08-18, 2026-08-17, 2026-08-15, 2026-08-13]
|
||||
timestamp: 2026-08-19T18:08:24Z
|
||||
tags: [theme, research, vault, deep-read, sales, crm, life-sciences, 2026-08-20, 2026-08-19, 2026-08-18, 2026-08-17, 2026-08-15, 2026-08-13]
|
||||
timestamp: 2026-08-20T18:09:15Z
|
||||
---
|
||||
|
||||
# Theme 5 · Robin's personal research (vendor deep reads + sales ammunition + CRM)
|
||||
@@ -51,19 +51,19 @@ The diagram shows Robin's research substrate: a single Obsidian vault with 8 buc
|
||||
|
||||
## Knowledge substrate: Obsidian vault
|
||||
|
||||
Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08-19T18:08:24Z):
|
||||
Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08-20T18:09:15Z):
|
||||
|
||||
| Field | Value |
|
||||
| --- | --- |
|
||||
| Repo path | `/home/ldw/workspace` |
|
||||
| Branch | `main` |
|
||||
| HEAD | `a4fa5a323d6dcabeb9eccad49e636ee6ba5f87a6` (**unchanged** at the 2026-08-19T18:08Z fetch — **0 new vault commits** in the 2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window; vault is silent for the **3rd consecutive fetch** after the 2026-08-17T18:09Z + 2026-08-18T18:10Z silent windows; **3 calendar days stale** since the last vault HEAD bump on 2026-08-16; the 2026-08-16 Quintard 2024 Nat Commun 4-commit LDR cycle + Guo 2026 Front Cell Dev Biol 3-commit LDR cycle remain the most recent vault activity) |
|
||||
| HEAD | `a4fa5a323d6dcabeb9eccad49e636ee6ba5f87a6` (**unchanged** at the 2026-08-20T18:09Z fetch — **0 new vault commits** in the 2026-08-19T18:08Z → 2026-08-20T18:09Z 24-hour window; vault is silent for the **4th consecutive fetch** after the 2026-08-17T18:09Z + 2026-08-18T18:10Z + 2026-08-19T18:08Z silent windows; **4 calendar days stale** since the last vault HEAD bump on 2026-08-16; the 2026-08-16 Quintard 2024 Nat Commun 4-commit LDR cycle + Guo 2026 Front Cell Dev Biol 3-commit LDR cycle remain the most recent vault activity) |
|
||||
| Ahead of origin/main | 20 commits new since 2026-08-03 fetch (unchanged from the 2026-08-17 + 2026-08-18 + 2026-08-19 fetches) |
|
||||
| Auth | local path only — no remote, no credentials |
|
||||
| Working-tree state | dirty (23 untracked files + 2 new untracked directories — `celvivo_commercial/1331651_20260630_131201.pdf` + `templates/类器官IRB申请清单.md` — both untracked; the `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder is still-uncommitted, carrying forward from the 2026-08-13 fetch, **8-day carry-forward** at the 2026-08-19T18:08Z fetch — **6 fetches silent** on the file) |
|
||||
| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-08-19T18-08-24-164Z/manifest.json` |
|
||||
| Working-tree state | dirty (23 untracked files + 2 new untracked directories — `celvivo_commercial/1331651_20260630_131201.pdf` + `templates/类器官IRB申请清单.md` — both untracked; the `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder is still-uncommitted, carrying forward from the 2026-08-13 fetch, **9-day carry-forward** at the 2026-08-20T18:09Z fetch — **7 fetches silent** on the file) |
|
||||
| Raw manifest | `~/.openwiki/connectors/git-repo/raw/2026-08-20T18-09-15-122Z/manifest.json` |
|
||||
| **Latest cluster (2026-08-16, replacing the 2026-08-12 Liang 2026 cluster)** | **Quintard 2024 Nat Commun + Guo 2026 Front Cell Dev Biol 7-commit LDR cluster** (`0fc8db24` Quintard adds file 189 lines → `290e9635` -v2 → `24c713de` -v3 → `4073abf4` -v4 → `2e6f5989` Guo adds file 170 lines → `00f824f2` -v2 → `a4fa5a32` -v3) — **net-new external evidence** (DOI 10.1038/s41598-026-42990-2, PMID 41857098, mouse liver 3-轨道 Hep-Orgs + Cho-Orgs + HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型) |
|
||||
| **Latest uncommitted artifact (2026-08-13 → 2026-08-19, multi-file, unchanged at the 2026-08-19T18:08Z fetch)** | `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` (carry-forward untracked from 2026-08-13, now at **8-day carry-forward** at the 2026-08-19 fetch — file mtime `2026-08-11 16:31:54 +0800` so mtime-based carry-forward is 8 days; first-observation-date-based carry-forward is 6 days; **structural signal continuing to weaken** per `/sources/git-repo.md` Notable-entity entry — 6 consecutive fetches silent on the file; subfolder is more likely a one-off than a recurring pattern) + **2 new untracked directories added at the 2026-08-17 fetch**, still-uncommitted at the 2026-08-19 fetch (**3-day carry-forward** each): `celvivo_commercial/1331651_20260630_131201.pdf` (6-30 quote PDF migrated into new folder) + `templates/类器官IRB申请清单.md` (180-line IRB application checklist derived from Guo 2026; Robin's first customer-facing template produced from a single deep-read — see the new Templates subtree below) |
|
||||
| **Latest uncommitted artifact (2026-08-13 → 2026-08-20, multi-file, unchanged at the 2026-08-20T18:09Z fetch)** | `04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` (carry-forward untracked from 2026-08-13, now at **9-day carry-forward** at the 2026-08-20 fetch — file mtime `2026-08-11 16:31:54 +0800` so mtime-based carry-forward is 9 days; first-observation-date-based carry-forward is 7 days; **structural signal continuing to weaken** per `/sources/git-repo.md` Notable-entity entry — 7 consecutive fetches silent on the file; subfolder is more likely a one-off than a recurring pattern) + **2 new untracked directories added at the 2026-08-17 fetch**, still-uncommitted at the 2026-08-20 fetch (**4-day carry-forward** each — was 3-day at the 2026-08-19 fetch): `celvivo_commercial/1331651_20260630_131201.pdf` (6-30 quote PDF migrated into new folder) + `templates/类器官IRB申请清单.md` (180-line IRB application checklist derived from Guo 2026; Robin's first customer-facing template produced from a single deep-read — see the new Templates subtree below) |
|
||||
|
||||
### Vault navigation index (top-level folders)
|
||||
|
||||
@@ -110,9 +110,9 @@ Snapshot from [`/sources/git-repo.md`](/sources/git-repo.md) (last fetch 2026-08
|
||||
| `Retinal/` | 1 | retinal organoid |
|
||||
| `Microbioreactor/` | 1 | Rosero 2026 Front Bioeng Biotechnol (added 2026-08-07) |
|
||||
| `Cells/` | 1 | Fernandez Vallone 2026 Cells THSDC (added 2026-08-08) |
|
||||
| `Review/` | 1 | Zhou 2023 computer vision + microfluidics (added 2026-08-13, **untracked**, **8-day carry-forward** at 2026-08-19 fetch — **6 fetches silent** — structural signal continuing to weaken) |
|
||||
| `Templates/` | 1 | `类器官IRB申请清单.md` v1.0 (2026-08-16, derived from Guo 2026 ethics deep-read, **untracked**; first customer-facing template produced from a single deep-read; **3-day carry-forward** at 2026-08-19 fetch) |
|
||||
| `CelVivo-commercial/` | 1 | `1331651_20260630_131201.pdf` (2026-06-30 quote PDF migrated into new folder 2026-08-17, **untracked**; **3-day carry-forward** at 2026-08-19 fetch) |
|
||||
| `Review/` | 1 | Zhou 2023 computer vision + microfluidics (added 2026-08-13, **untracked**, **9-day carry-forward** at 2026-08-20 fetch (was 8-day at 2026-08-19) — **7 fetches silent** — structural signal continuing to weaken) |
|
||||
| `Templates/` | 1 | `类器官IRB申请清单.md` v1.0 (2026-08-16, derived from Guo 2026 ethics deep-read, **untracked**; first customer-facing template produced from a single deep-read; **4-day carry-forward** at 2026-08-20 fetch — was 3-day at 2026-08-19) |
|
||||
| `CelVivo-commercial/` | 1 | `1331651_20260630_131201.pdf` (2026-06-30 quote PDF migrated into new folder 2026-08-17, **untracked**; **4-day carry-forward** at 2026-08-20 fetch — was 3-day at 2026-08-19) |
|
||||
|
||||
Total ≈ 1,206 deep-read notes on `main` + **1 untracked entry in the new `Review/` subfolder** (`zhou2023_computer_vision_microfluidics.md`, 2026-08-13 — first review-type subfolder; future-commit candidate) + **2 new untracked directories** (`templates/类器官IRB申请清单.md` + `celvivo_commercial/1331651_20260630_131201.pdf`, 2026-08-17). The 4 vendor subfolders (Celvivo / 3Brain / Cellink / Organoid) cover the canonical product KB per the wiki goal focus areas. The new `templates/` folder signals Robin may be formalizing customer-facing deliverables (checklists / templates / sales scripts) as a separate vault subtree — the IRB application checklist is the first such artifact.
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