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2026-08-20 02:15:52 +08:00
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@@ -1,10 +1,10 @@
---
type: "Reference"
title: "Git repo — evidence index (Obsidian vault, Robin)"
description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD a4fa5a32, 2026-08-16, 7 new vault commits in the 2026-08-15T18:07Z → 2026-08-17T18:09Z 48-hour window; **0 new vault commits in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour window — vault is silent**) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 1fc73ae, 2026-08-18, **2 new automated wiki commits in the 2026-08-17T18:09Z → 2026-08-18T18:10Z window: `8127797` daily update 2026-08-18 + `1fc73ae` sources-sync 2026-08-18**). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD a4fa5a32, 2026-08-16, **0 new vault commits in the 2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window — vault is silent for the 3rd consecutive fetch**) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD dcb53a2, 2026-08-19, **2 new automated wiki commits in the 2026-08-18T18:10Z → 2026-08-19T18:08Z window: `7e904ec` daily update 2026-08-19 + `dcb53a2` sources-sync 2026-08-19 — the fifth consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern**). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
resource: "~/.openwiki/connectors/git-repo/config.json"
tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-18, 2026-08-17, 2026-08-15, 2026-08-13]
timestamp: 2026-08-18T18:10:12Z
tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-19, 2026-08-18, 2026-08-17, 2026-08-15, 2026-08-13]
timestamp: 2026-08-19T18:08:24Z
---
# Git repo — evidence index (Obsidian vault + OpenWiki wiki)
@@ -35,54 +35,66 @@ help locate things in the vault, not summarize their content.
Parate / Lee / Hodge cluster. The 2026-08-12 Liang 2026 4-commit LDR
cycle remains the prior baseline cluster).
- `openwiki-wiki` → `/home/ldw/.openwiki/wiki` (the OpenWiki knowledge
base itself, on `main`, HEAD `be4928553364a654b888807a44438b738072c2ce`
as of 2026-08-17T +0800 — 4 new wiki-side commits in the
2026-08-15T18:07Z → 2026-08-17T18:09Z window: `151d22b` daily
base itself, on `main`, HEAD `dcb53a2873d37b6396de682d658433c2ea85b376`
as of 2026-08-19T +0800 — 8 new wiki-side commits across the
2026-08-15T18:07Z → 2026-08-19T18:08Z window: `151d22b` daily
update 2026-08-16 + `997b648` sources-sync 2026-08-16 + `5c70881`
daily update 2026-08-17 + `be49285` sources-sync 2026-08-17; the
`5c70881` daily update also created the new `sources/openwiki-version-drift.md`
auto-generated page).
daily update 2026-08-17 + `be49285` sources-sync 2026-08-17 +
`8127797` daily update 2026-08-18 + `1fc73ae` sources-sync
2026-08-18 + `7e904ec` daily update 2026-08-19 + `dcb53a2`
sources-sync 2026-08-19; the `5c70881` daily update also created
the new `sources/openwiki-version-drift.md` auto-generated page;
the 4 sources-syncs (`997b648` + `be49285` + `1fc73ae` + `dcb53a2`)
all re-applied the `2507925` 2026-08-15 count-data wipe pattern).
- **Auth:** local paths only — no remote, no credentials.
- **Latest fetch:** `2026-08-18T18:10:12Z` (raw manifest
`~/.openwiki/connectors/git-repo/raw/2026-08-18T18-10-12-916Z/manifest.json`).
- **Latest fetch:** `2026-08-19T18:08:24Z` (raw manifest
`~/.openwiki/connectors/git-repo/raw/2026-08-19T18-08-24-164Z/manifest.json`).
- **Source config:** `~/.openwiki/connectors/git-repo/config.json`
- **State:** `~/.openwiki/connectors/git-repo/state.json` records
`latestIds` per repo; the 2026-08-18T18:10Z fetch observed vault HEAD
unchanged at `a4fa5a32` (2026-08-16 — same as the 2026-08-17T18:09Z
fetch; **0 new vault commits in the 24-hour window**), and observed
`openwiki-wiki` bumped from `be49285` (2026-08-17T18:09Z fetch) to
`1fc73ae` (2 new automated wiki commits in the 24-hour window:
`8127797` daily update 2026-08-18 + `1fc73ae` sources-sync
`latestIds` per repo; the 2026-08-19T18:08Z fetch observed vault HEAD
unchanged at `a4fa5a32` (2026-08-16 — same as the 2026-08-17T18:09Z +
2026-08-18T18:10Z + 2026-08-19T18:08Z fetches; **0 new vault commits
in the 24-hour window — vault is silent for the 3rd consecutive
fetch**), and observed `openwiki-wiki` bumped from `1fc73ae`
(2026-08-18T18:10Z fetch) to `dcb53a2` (2 new automated wiki commits
in the 24-hour window: `7e904ec` daily update 2026-08-19 +
`dcb53a2` sources-sync 2026-08-19 — the **fifth** consecutive
sources-sync re-applying the 2026-08-15 count-data wipe pattern
after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae`
2026-08-18).
## obsidian-vault — working-tree status (2026-08-18)
## obsidian-vault — working-tree status (2026-08-19)
- **Branch:** `main`
- **HEAD:** `a4fa5a323d6dcabeb9eccad49e636ee6ba5f87a6` (vault HEAD
**unchanged** at `a4fa5a32` across the 2026-08-18T18:10Z fetch — **0
new commits** in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour
window. The 2026-08-16 Quintard 2024 Nat Commun 4-commit LDR cycle +
Guo 2026 Front Cell Dev Biol 3-commit LDR cycle remain the most
recent committed vault activity (vault HEAD last bumped on
2026-08-16, 2 calendar days before this fetch — same state as the
2026-08-17T18:09Z fetch)).
**unchanged** at `a4fa5a32` across the 2026-08-19T18:08Z fetch —
**0 new commits** in the 2026-08-18T18:10Z → 2026-08-19T18:08Z
24-hour window; the vault is silent for the **3rd consecutive
fetch** after the 2026-08-17T18:09Z + 2026-08-18T18:10Z silent
windows. The 2026-08-16 Quintard 2024 Nat Commun 4-commit LDR
cycle + Guo 2026 Front Cell Dev Biol 3-commit LDR cycle remain
the most recent committed vault activity (vault HEAD last bumped
on 2026-08-16, **3 calendar days before this fetch** — same state
as the 2026-08-17T18:09Z + 2026-08-18T18:10Z fetches).
- **mtime activity in window:** **0 new mtime changes** in the
2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour window. The 2
2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window. The 2
untracked dirs from the 2026-08-17T18:09Z fetch are unchanged:
`celvivo_commercial/` last touched 2026-08-17 15:04 +0800 (= 07:04
UTC, **before** the 24h window) + `templates/` last touched
2026-08-16 10:27 +0800 (= 02:27 UTC, well before the window). The
`Review/zhou2023_computer_vision_microfluidics.md` first-entry
file is unchanged from the 2026-08-17T18:09Z fetch (mtime
2026-08-11, **7-day carry-forward** in the untracked set; the
structural signal continues to weaken per the Notable-entity entry
on the `Review/` subfolder).
- **Ahead of origin/main:** 20 commits new since 2026-08-03 fetch (unchanged from the 2026-08-17T18:09Z fetch — vault is silent in the 2026-08-17T18:09Z → 2026-08-18T18:10Z window).
2026-08-11, **8-day carry-forward** in the untracked set at this
fetch; the structural signal continues to weaken per the
Notable-entity entry on the `Review/` subfolder).
- **Ahead of origin/main:** 20 commits new since 2026-08-03 fetch (unchanged from the 2026-08-17T18:09Z + 2026-08-18T18:10Z fetches — vault is silent in the 2026-08-18T18:10Z → 2026-08-19T18:08Z window).
- **Dirty:** yes — the untracked file set is **unchanged** from the
2026-08-17T18:09Z fetch (no new untracked files or directories
appeared in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour
window). The 25+ untracked entries from the 2026-08-17T18:09Z fetch
carry forward unchanged: 8 × `02-Clients/Agents/区域-2026-0807.md`
window, and no new untracked files or directories appeared in the
2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window either). The
25+ untracked entries from the 2026-08-17T18:09Z fetch carry
forward unchanged: 8 × `02-Clients/Agents/区域-2026-0807.md`
distributor-rebuild files (per the 2026-08-07 Hermes hook 4 sweep)
+ 14 working-folder files (Parfitt 2024 DJ1 LOF midbrain + Liu2026
/ Miao2025 v2 / Miao2025 vascularized / Microbioreactor 2026 /
@@ -95,10 +107,11 @@ help locate things in the vault, not summarize their content.
directories from the 2026-08-17T18:09Z fetch (`celvivo_commercial/`
+ `templates/`). The **`Review/zhou2023_computer_vision_microfluidics.md`
first entry in the new `Review/` subfolder** is still **untracked**
(Robin has not yet committed it) — **7-day carry-forward** at this
(Robin has not yet committed it) — **8-day carry-forward** at this
fetch; the structural signal continues to weaken per the
Notable-entity entry on the `Review/` subfolder (the subfolder has
been a single-entry watchlist since 2026-08-13).
been a single-entry watchlist since 2026-08-13, now **6 fetches
silent**).
- **Working-tree status (raw manifest, abbreviated):**
| Status | Path |
@@ -308,71 +321,87 @@ indexed on [`/sources/literature.md`](/sources/literature.md). The
`1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran
on the same paper.
## openwiki-wiki — working-tree status (2026-08-18)
## openwiki-wiki — working-tree status (2026-08-19)
- **Branch:** `main`
- **HEAD:** `1fc73aeeff541a9f0079ace0fd2d3206ee639193` (the
- **HEAD:** `dcb53a2873d37b6396de682d658433c2ea85b376` (the
`chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts
(sources-sync 2026-08-18)` commit — same auto-source-sync job that
(sources-sync 2026-08-19)` commit — same auto-source-sync job that
carried the 2026-08-15 count-data wipe + re-applied the pattern on
2026-08-16 + 2026-08-17 + now 2026-08-18; see Notable-entity §
"2026-08-15 sources-sync bug" for the operational note). The
2026-08-18T18:10Z fetch observed wiki HEAD bumped from `be49285`
(2026-08-17T18:09Z fetch) to `1fc73ae` — **2 new automated wiki
commits** in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour
window: (a) `8127797` chore: daily update 2026-08-18 (2026-08-18
02:23 +0800); (b) `1fc73ae` chore(sources): refresh
NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-18,
2026-08-18 02:30 +0800). Both commits are routine auto-orchestration
— the `8127797` daily update carried the synthesis-layer edits from
the prior HN-1 2026-08-18T18:00Z run + this git-repo-1 2026-08-17T18:09Z
run; the `1fc73ae` sources-sync re-applied the count-data wipe
pattern on NocoDB / SeaFile / Wiki.js / RAGFlow for the **fourth**
consecutive time.
- **Working-tree state:** 9 modified files (uncommitted — pending next
CLI orchestration), **unchanged from the 2026-08-17T18:09Z fetch**
(the `8127797` 2026-08-18 daily update committed some synthesis
edits but the working tree still shows 9 uncommitted files because
the very next synthesis edits from this git-repo-1 2026-08-18T18:10Z
run re-touch the same files). The 9 dirty files are:
2026-08-16 + 2026-08-17 + 2026-08-18 + now 2026-08-19; see
Notable-entity § "2026-08-15 sources-sync bug" for the operational
note). The 2026-08-19T18:08Z fetch observed wiki HEAD bumped from
`1fc73ae` (2026-08-18T18:10Z fetch) to `dcb53a2` — **2 new
automated wiki commits** in the 2026-08-18T18:10Z →
2026-08-19T18:08Z 24-hour window: (a) `7e904ec` chore: daily update
2026-08-19 (2026-08-19 02:23 +0800); (b) `dcb53a2` chore(sources):
refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync
2026-08-19, 2026-08-19 02:30 +0800). Both commits are routine
auto-orchestration — the `7e904ec` daily update carried the
synthesis-layer edits from the prior HN-1 2026-08-19T18:00Z +
web-search-1 2026-08-19 + git-repo-1 2026-08-18T18:10Z runs; the
`dcb53a2` sources-sync re-applied the count-data wipe pattern on
NocoDB / SeaFile / Wiki.js / RAGFlow for the **fifth** consecutive
time.
- **Working-tree state:** 10 modified files (uncommitted — pending
next CLI orchestration), **unchanged from the 2026-08-18T18:10Z
fetch** (the `7e904ec` 2026-08-19 daily update committed some
synthesis edits but the working tree still shows 10 uncommitted
files because the very next synthesis edits from this git-repo-1
2026-08-19T18:08Z run re-touch the same files). The 10 dirty files
are:
- `.last-update.json` — CLI metadata, will be updated when this run's
`status: complete` lands.
- `quickstart.md` — contains the accumulated "Latest update"
paragraphs from the prior HN-1 2026-08-15 + web-search-1 2026-08-15
+ git-repo-1 2026-08-13 runs, plus the "Latest update —
git-repo-1 (2026-08-15T18:07Z)" paragraph added by the
2026-08-15T18:07Z git-repo run, plus the "Latest update —
git-repo-1 (2026-08-17T18:09Z)" paragraph added by the
2026-08-17T18:09Z git-repo run; this git-repo-1 2026-08-18T18:10Z
run adds the "Latest update — git-repo-1 (2026-08-18T18:10Z)"
paragraph and updates the Backlog git-repo entry to reflect the
new wiki HEAD `1fc73ae`.
git-repo-1 (2026-08-15T18:07Z)" + "Latest update — git-repo-1
(2026-08-17T18:09Z)" + "Latest update — git-repo-1
(2026-08-18T18:10Z)" paragraphs added by the 2026-08-15 +
2026-08-17 + 2026-08-18 git-repo runs; this git-repo-1
2026-08-19T18:08Z run adds the "Latest update — git-repo-1
(2026-08-19T18:08Z)" paragraph and updates the Backlog git-repo
entry to reflect the new wiki HEAD `dcb53a2`.
- `sources/README.md` — refreshed connector-roll table row for
web-search-1 (added the 2026-08-15 skip to the 4-entry skip streak)
+ added frontmatter placeholders to nocodb.md / ragflow.md /
seafile.md / wikijs.md during the 2026-08-15 daily update.
web-search-1 (added the 2026-08-15 + 2026-08-17 + 2026-08-18 +
2026-08-19 skips to the 7-entry skip streak) + added frontmatter
placeholders to nocodb.md / ragflow.md / seafile.md / wikijs.md
during the 2026-08-15 daily update.
- `sources/hackernews.md` — accumulated "Latest update —
2026-08-15 18:00 UTC" + "Latest update — 2026-08-16 18:00 UTC" +
"Latest update — 2026-08-17 18:00 UTC" + "Latest update —
2026-08-18 18:00 UTC" sections from the prior HN-1 2026-08-15 +
HN-1 2026-08-16 + HN-1 2026-08-17 + HN-1 2026-08-18 runs
(Auto-research with codex 232x Faster Kernel + Anthropic multi-agent
+ Stripe/OpenRouter + Copilot Autofix + Qwen 3.8 27B + Agent Mesh +
machine0 YC S26 + Amazon order emails AI-agent data
flag-for-traceability callouts + the 4th / 5th / 6th / 7th
consecutive empty / noise-only Algolia lane streak notes) — landed
in uncommitted state during the HN-1 runs.
2026-08-18 18:00 UTC" + "Latest update — 2026-08-19 18:00 UTC"
sections from the prior HN-1 2026-08-15 + HN-1 2026-08-16 + HN-1
2026-08-17 + HN-1 2026-08-18 + HN-1 2026-08-19 runs (Auto-research
with codex 232x Faster Kernel + Anthropic multi-agent +
Stripe/OpenRouter + Copilot Autofix + Qwen 3.8 27B + Agent Mesh +
machine0 YC S26 + Amazon order emails AI-agent data +
OpenRouter-Stripe formal confirmation + OneCLI + Extensible
Software + Frugal Tokens flag-for-traceability callouts + the
4th / 5th / 6th / 7th / 8th consecutive empty / noise-only
Algolia lane streak notes) — landed in uncommitted state during
the HN-1 runs.
- `sources/index.md` — re-appears as dirty in the working tree at
this fetch (was committed by `151d22b` 2026-08-16 daily update,
then re-touched by subsequent HN-1 + git-repo-1 synthesis edits
and re-appears as uncommitted). Status: accumulated
synthesis-layer edits from the prior HN-1 2026-08-13 + HN-1
2026-08-15 + HN-1 2026-08-16 + HN-1 2026-08-17 + HN-1 2026-08-18
+ HN-1 2026-08-19 + git-repo-1 2026-08-13 + git-repo-1 2026-08-15
+ git-repo-1 2026-08-17 + git-repo-1 2026-08-18 + this
git-repo-1 2026-08-19 runs.
- `sources/nocodb.md` — `openwiki_generated: true` placeholder
frontmatter auto-applied during the 2026-08-15 daily update +
carried forward in 2026-08-16 + 2026-08-17 + 2026-08-18 daily
updates; **placeholder resolved by the 2026-08-18T18:10Z update
run** (proper `type` / `title` / `description` / `tags` frontmatter
now in place); **count data wiped** by `2507925` 2026-08-15
sources-sync (NocoDB went from 6614 → 0 records) and the wipe
persists across the 3 subsequent sources-syncs (`997b648` 2026-08-16
+ `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 — the count stays at
0 across all 4 sources-syncs); body content (13 literature tables +
record counts from `1737454` baseline) remains intact.
carried forward in 2026-08-16 + 2026-08-17 + 2026-08-18 +
2026-08-19 daily updates; **placeholder resolved by the
2026-08-18T18:10Z update run** (proper `type` / `title` /
`description` / `tags` frontmatter now in place); **count data
wiped** by `2507925` 2026-08-15 sources-sync (NocoDB went from
6614 → 0 records) and the wipe persists across the 4 subsequent
sources-syncs (`997b648` 2026-08-16 + `be49285` 2026-08-17 +
`1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 — the count stays at
0 across all 5 sources-syncs); body content (13 literature tables
+ record counts from `1737454` baseline) remains intact.
- `sources/ragflow.md` — same `openwiki_generated: true` placeholder
auto-applied during the 2026-08-15 daily update;
**placeholder resolved by the 2026-08-18T18:10Z update run**
@@ -387,19 +416,20 @@ on the same paper.
in place); **count data wiped** by `2507925` 2026-08-15
sources-sync (libraries table emptied — SeaFile was already empty
in `1737454` already — a separate, older cron issue not introduced
by `2507925`); body content (API config + integration chain) remains
intact.
by `2507925`); body content (API config + integration chain)
remains intact.
- `sources/web-search.md` — accumulated "2026-08-15 attempted
update — skipped" + "2026-08-17 attempted update — skipped" +
"2026-08-18 attempted update — skipped" sections from the
web-search-1 2026-08-15 + web-search-1 2026-08-17 + web-search-1
2026-08-18 runs (5th + 6th + 7th consecutive skips on the same
code path).
"2026-08-18 attempted update — skipped" + "2026-08-19 attempted
update — skipped" sections from the web-search-1 2026-08-15 +
web-search-1 2026-08-17 + web-search-1 2026-08-18 + web-search-1
2026-08-19 runs (5th + 6th + 7th + 8th consecutive skips on the
same code path).
- `sources/wikijs.md` — same `openwiki_generated: true` placeholder
auto-applied during the 2026-08-15 daily update; **count data
wiped** by `2507925` 2026-08-15 sources-sync (Wiki.js went from
83 → 0 unique pages; ID range 22..1704 → 0..0) and the wipe
persists across the 3 subsequent sources-syncs.
persists across the 4 subsequent sources-syncs.
- **Auth:** local path only — no remote, no credentials.
- **New file in this window:** `sources/openwiki-version-drift.md`
was created in the 2026-08-17 daily update commit `5c70881` (auto-
@@ -413,6 +443,8 @@ on the same paper.
| Date | Hash | Note |
| --- | --- | --- |
| 2026-08-19 | `dcb53a2` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-19) — **count-data wipe re-applied** for the **fifth** consecutive sources-sync (after 2026-08-15 `2507925` + 2026-08-16 `997b648` + 2026-08-17 `be49285` + 2026-08-18 `1fc73ae`); see Notable-entity § "2026-08-15 sources-sync bug" |
| 2026-08-19 | `7e904ec` | chore: daily update 2026-08-19 (synthesis-layer edits accumulated from the prior HN-1 2026-08-19T18:00Z + web-search-1 2026-08-19 + git-repo-1 2026-08-18T18:10Z runs + the prior `sources/openwiki-version-drift.md` carryover) |
| 2026-08-18 | `1fc73ae` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-18) — **count-data wipe re-applied** for the **fourth** consecutive sources-sync (after 2026-08-15 `2507925` + 2026-08-16 `997b648` + 2026-08-17 `be49285`); see Notable-entity § "2026-08-15 sources-sync bug" |
| 2026-08-18 | `8127797` | chore: daily update 2026-08-18 (synthesis-layer edits accumulated from the prior HN-1 2026-08-18T18:00Z + git-repo-1 2026-08-17T18:09Z runs + the new `sources/openwiki-version-drift.md` carryover) |
| 2026-08-17 | `be49285` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-17) |
@@ -489,9 +521,10 @@ pipeline catches up.
| --- | --- | --- |
| 2026-08-15T18:07:49Z → 2026-08-17T18:09:32Z | HEAD `297f106d` → `a4fa5a32` (**7 new commits**: `0fc8db24` + `290e9635` + `24c713de` + `4073abf4` Quintard 2024 Nat Commun microfluidic vascularized organoid chip 4-commit LDR cycle + `2e6f5989` + `00f824f2` + `a4fa5a32` Guo 2026 Front Cell Dev Biol organoid ethics systematic review 3-commit LDR cycle — **first time since the 2026-07-28 / 2026-07-29 Parate / Lee / Hodge cluster that two new paper deep-reads landed on `main` in the same 48-hour window**) | HEAD `2507925` → `be49285` (**4 new commits**: `151d22b` daily update 2026-08-16 + `997b648` sources-sync 2026-08-16 + `5c70881` daily update 2026-08-17 + `be49285` sources-sync 2026-08-17) |
| 2026-08-17T18:09:32Z → 2026-08-18T18:10:12Z | HEAD **unchanged** at `a4fa5a32` (**0 new commits**, **0 new mtime changes** — vault is silent in this 24-hour window; the 2026-08-16 Quintard 2024 + Guo 2026 cluster remains the most recent vault activity) | HEAD `be49285` → `1fc73ae` (**2 new automated commits**: `8127797` chore: daily update 2026-08-18 + `1fc73ae` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-18, the **fourth** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern)) |
| **Net new external evidence** | **2 new paper deep-reads**: Quintard 2024 Nat Commun microfluidic vascularized organoid chip + Guo 2026 Front Cell Dev Biol organoid ethics systematic review. **2 new untracked directories**: `celvivo_commercial/1331651_20260630_131201.pdf` (the 6-30 quote PDF migrated into a new folder) + `templates/类器官IRB申请清单.md` (the IRB application checklist derived from Guo 2026 — Robin's first customer-facing sales ammunition template produced from a single deep-read). The `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder is still untracked, carrying forward from the 2026-08-13 fetch | **1 new wiki file** (carried from 2026-08-17): `sources/openwiki-version-drift.md` (auto-generated OpenWiki version-drift monitor; v0.3.1 local → v0.3.3 npm latest as of 2026-08-15T20:00:03Z). Synthesis-layer edits accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + HN-1 2026-08-16 + HN-1 2026-08-17 + HN-1 2026-08-18 + web-search-1 2026-08-15 + web-search-1 2026-08-17 + web-search-1 2026-08-18 + git-repo-1 2026-08-13 + git-repo-1 2026-08-15 + git-repo-1 2026-08-17 + git-repo-1 2026-08-18 runs are pending the next CLI commit cycle |
| Untracked → committed migrations | **Quintard 2024 file (4 commits)** + **Guo 2026 file (3 commits)** all moved from absent → committed on `main`; **the 2 new untracked directories** are net-new in the 2026-08-15 → 2026-08-17 window. **None** in the 2026-08-17 → 2026-08-18 window (vault silent). | **2026-08-15 → 2026-08-17 window**: **none** of the 9 dirty files were committed in this window (the `sources/index.md` from the 2026-08-15 dirty set was committed by the 2026-08-16 daily update `151d22b`; the remaining 9 dirty files are uncommitted synthesis edits accumulated across the prior HN-1 + web-search-1 + git-repo-1 runs). **2026-08-17 → 2026-08-18 window**: the `8127797` 2026-08-18 daily update committed a subset of the synthesis-layer edits from the prior HN-1 2026-08-18T18:00Z + git-repo-1 2026-08-17T18:09Z runs (touching `commitments.md` + `index.md` + `quickstart.md` + `sources/{README,git-repo,hackernews,index,literature,nocodb,ragflow,seafile,web-search,wikijs}.md` + `themes/{01-organoid-equipment,05-robin-research}.md` per `git show --stat 8127797`); the 9 dirty files (`.last-update.json` + `quickstart.md` + `sources/{README,hackernews,nocodb,ragflow,seafile,web-search,wikijs}.md`) re-appear in the working tree because the very next synthesis edits from this git-repo-1 2026-08-18T18:10Z run re-touch the same files. The 9 dirty files are awaiting the next CLI commit cycle |
| **Operational issue carried over from prior runs** | n/a | **`2507925` 2026-08-15 sources-sync bug** + the 2026-08-16 `997b648` + 2026-08-17 `be49285` + 2026-08-18 `1fc73ae` sources-syncs (which re-applied the same operational pattern as `2507925` — NocoDB / Wiki.js / RAGFlow count values stayed zero across all **4** sources-syncs). The on-disk `~/.openwiki/connectors/web-search/config.json` is unaffected — this is a wiki-side CRON issue with the auto-source-sync job, not a connector config issue. Recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page. The data is recoverable from `git show 8ddc6d9:sources/nocodb.md` etc. for any future recovery commit |
| 2026-08-18T18:10:12Z → 2026-08-19T18:08:24Z | HEAD **unchanged** at `a4fa5a32` (**0 new commits**, **0 new mtime changes** — vault is silent in this 24-hour window for the **3rd consecutive fetch**; the 2026-08-16 Quintard 2024 + Guo 2026 cluster remains the most recent vault activity, **3 calendar days stale**) | HEAD `1fc73ae` → `dcb53a2` (**2 new automated commits**: `7e904ec` chore: daily update 2026-08-19 + `dcb53a2` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-19, the **fifth** consecutive sources-sync re-applying the `2507925` 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + now `dcb53a2` 2026-08-19)) |
| **Net new external evidence** | **2 new paper deep-reads** (from the 2026-08-15T18:07Z → 2026-08-17T18:09Z window): Quintard 2024 Nat Commun microfluidic vascularized organoid chip + Guo 2026 Front Cell Dev Biol organoid ethics systematic review. **2 new untracked directories** (from the same window): `celvivo_commercial/1331651_20260630_131201.pdf` (the 6-30 quote PDF migrated into a new folder) + `templates/类器官IRB申请清单.md` (the IRB application checklist derived from Guo 2026 — Robin's first customer-facing sales ammunition template produced from a single deep-read). The `Review/zhou2023_computer_vision_microfluidics.md` first-entry-in-Review/-subfolder is still untracked, carrying forward from the 2026-08-13 fetch (**8-day carry-forward** at the 2026-08-19T18:08Z fetch). **No new vault evidence in the 2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window** | **1 new wiki file** (from the 2026-08-17 daily update `5c70881`): `sources/openwiki-version-drift.md` (auto-generated OpenWiki version-drift monitor; v0.3.1 local → v0.3.3 npm latest as of 2026-08-15T20:00:03Z). Synthesis-layer edits accumulated across the prior HN-1 2026-08-13 + HN-1 2026-08-15 + HN-1 2026-08-16 + HN-1 2026-08-17 + HN-1 2026-08-18 + HN-1 2026-08-19 + web-search-1 2026-08-15 + web-search-1 2026-08-17 + web-search-1 2026-08-18 + web-search-1 2026-08-19 + git-repo-1 2026-08-13 + git-repo-1 2026-08-15 + git-repo-1 2026-08-17 + git-repo-1 2026-08-18 + this git-repo-1 2026-08-19 runs are pending the next CLI commit cycle |
| Untracked → committed migrations | **Quintard 2024 file (4 commits)** + **Guo 2026 file (3 commits)** all moved from absent → committed on `main` (in the 2026-08-15T18:07Z → 2026-08-17T18:09Z window); **the 2 new untracked directories** are net-new in the same window. **None** in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour window (vault silent) or the 2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window (vault silent for the 3rd consecutive fetch) | **2026-08-15T18:07Z → 2026-08-17T18:09Z window**: the `sources/index.md` from the 2026-08-15 dirty set was committed by the 2026-08-16 daily update `151d22b`; the remaining 9 dirty files are uncommitted synthesis edits accumulated across the prior HN-1 + web-search-1 + git-repo-1 runs. **2026-08-17T18:09Z → 2026-08-18T18:10Z window**: the `8127797` 2026-08-18 daily update committed a subset of the synthesis-layer edits from the prior HN-1 2026-08-18T18:00Z + git-repo-1 2026-08-17T18:09Z runs (touching `commitments.md` + `index.md` + `quickstart.md` + `sources/{README,git-repo,hackernews,index,literature,nocodb,ragflow,seafile,web-search,wikijs}.md` + `themes/{01-organoid-equipment,05-robin-research}.md` per `git show --stat 8127797`); the 9 dirty files re-appear in the working tree because the very next synthesis edits from this git-repo-1 2026-08-18T18:10Z run re-touch the same files. **2026-08-18T18:10Z → 2026-08-19T18:08Z window**: the `7e904ec` 2026-08-19 daily update committed a subset of the synthesis-layer edits from the prior HN-1 2026-08-19T18:00Z + web-search-1 2026-08-19 + git-repo-1 2026-08-18T18:10Z runs (touching `.last-update.json` + `quickstart.md` + `sources/{README,git-repo,hackernews,index,nocodb,ragflow,seafile,web-search,wikijs}.md` + `themes/05-robin-research.md` per `git show --stat 7e904ec`); the 10 dirty files (`.last-update.json` + `quickstart.md` + `sources/{README,hackernews,index,nocodb,ragflow,seafile,web-search,wikijs}.md`) re-appear in the working tree because the very next synthesis edits from this git-repo-1 2026-08-19T18:08Z run re-touch the same files. The 10 dirty files are awaiting the next CLI commit cycle |
| **Operational issue carried over from prior runs** | n/a | **`2507925` 2026-08-15 sources-sync bug** + the 2026-08-16 `997b648` + 2026-08-17 `be49285` + 2026-08-18 `1fc73ae` + 2026-08-19 `dcb53a2` sources-syncs (which re-applied the same operational pattern as `2507925` — NocoDB / Wiki.js / RAGFlow count values stayed zero across all **5** sources-syncs). The on-disk `~/.openwiki/connectors/web-search/config.json` is unaffected — this is a wiki-side CRON issue with the auto-source-sync job, not a connector config issue. Recorded for traceability on `/sources/git-repo.md` Notable-entity § "2026-08-15 sources-sync bug" and on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page. The data is recoverable from `git show 8ddc6d9:sources/nocodb.md` etc. for any future recovery commit |
## Vault navigation index
@@ -543,9 +576,9 @@ Markdown file counts per deep-read subfolder:
| `Retinal/` | 1 |
| `Microbioreactor/` | 1 (new as of 2026-08-07 — Rosero 2026 Front Bioeng Biotechnol) |
| `Cells/` | 1 (new as of 2026-08-08 — Fernandez Vallone 2026 Cells THSDC) |
| `Review/` | 1 (new as of 2026-08-13 — Zhou 2023 computer vision + microfluidics, **untracked**) |
| `templates/` | 1 (new as of 2026-08-17 — `类器官IRB申请清单.md`, derived from the Guo 2026 ethics deep-read; Robin's first customer-facing template produced from a single deep-read, **untracked**) |
| `celvivo_commercial/` | 1 (new as of 2026-08-17 — `1331651_20260630_131201.pdf`, the 6-30 quote PDF migrated into a new folder, **untracked**) |
| `Review/` | 1 (new as of 2026-08-13 — Zhou 2023 computer vision + microfluidics, **untracked**, **8-day carry-forward** at 2026-08-19 fetch, **6 fetches silent** — structural signal continuing to weaken) |
| `templates/` | 1 (new as of 2026-08-17 — `类器官IRB申请清单.md`, derived from the Guo 2026 ethics deep-read; Robin's first customer-facing template produced from a single deep-read, **untracked**, **3-day carry-forward** at 2026-08-19 fetch) |
| `celvivo_commercial/` | 1 (new as of 2026-08-17 — `1331651_20260630_131201.pdf`, the 6-30 quote PDF migrated into a new folder, **untracked**, **3-day carry-forward** at 2026-08-19 fetch) |
Total ≈ 1,207 deep-read notes on `main` (+2 from the 2026-08-16 Quintard 2024 + Guo 2026 clusters).
Review/ zhou2023 computer vision + microfluidics, **untracked** — only
@@ -613,9 +646,9 @@ fields still 待补).
- **Quintard 2024 Nat Commun microfluidic vascularized organoid chip (2026-08-16, 7 commits in 48-hour window)** — `obsidian-vault/Literature/Deep-Reads/Organoid/quintard_2024_vasorganoid_chip.md` (189 lines; 4-commit LDR cycle `0fc8db24` adds → `290e9635` -v2 修图床/双 H1/落款 → `24c713de` -v3 Wiki.js 自带图床 6 张图 → `4073abf4` -v4 转发语标题/落款加粗/删 3Brain; Wiki IDs 1719/1720/1722, NocoDB Id 3297). The paper is **the first microfluidic / organ-on-chip platform paper** Robin has deep-read in the 2026-08 window; the platform combines (i) 10-channel parallel microfluidic chips with U-shaped capture sites (300-800 µm adjustable), (ii) fibrin + Matrigel hydrogel layer deposition using Landau-Levich-Bretherton effect, (iii) ~10 s capture efficiency ~100%, (iv) dynamic perfusion 7-30 days with HUVEC + fibroblast co-culture + hiPSC-derived BVO + islet spheroid + lung organoid cross-validation, (v) hierarchical vasculature (37 µm upstream artery-vein + 8 µm BVO capillaries, matching physiological ranges 50-1900 s⁻¹). **Net-new external evidence** in this run (git-repo-1 2026-08-17). The 4-star "与我们的产品" table lists **Mimetas OrganoPlate ⭐⭐⭐⭐** (direct Phaseguide-based vascularized / kidney / intestine organ-on-chip competitor) + **CelVivo ClinoStar ⭐⭐⭐** (upstream workflow step: BVO differentiation day 0-15 needs rotating-wall suspension culture; ClinoStar is the canonical hardware for this stage; the paper's day 15 → chip-on-board handoff is the canonical CelVivo → organ-on-chip workflow) + **Emulate Organ-Chip ⭐⭐⭐** (Colon-Intestine-Liver platform companion). Synthesis routes into `/themes/05-robin-research.md` (新增 by-vendor entry) and `/sources/literature.md` (last-30-days deep-read table). Vendor-anchor mapping: CelVivo-adjacent (workflow upstream) + Mimetas OrganoPlate / Emulate Organ-Chip (organ-on-chip product lane that Robin's portfolio does not currently cover but represents a potential cross-sell if Robin's customers ask "where do I run my CelVivo-matured organoids in a vascularized microenvironment?"). Customer-entry: 药企临床前 (vascularized drug screening) + 微流控 organ-on-chip 平台集成商 (Mimetas / Emulate channel partners) + academic PI (vascular development / diabetes). **Track on next fetch** whether Robin publishes a `/sources/literature-quintard-2024-nat-commun-vasorganoid-chip-deepread.md` synthesis page; the deep-read pipeline currently only carries `liang-2026-celvivo-clinostar-positioning` + `miao-2025-celvivo-clinostar-positioning` + `liu-2026-hd-mea-roadmap-implication` + `sharma-2026-retinal-organoid-mea-cross-sell` — no Quintard synthesis page yet.
- **Guo 2026 Front Cell Dev Biol organoid ethics systematic review (2026-08-16, 7 commits in 48-hour window)** — `obsidian-vault/Literature/Deep-Reads/Organoid/guo_2026_organoid_ethical_review.md` (170 lines + 3 真图; 3-commit LDR cycle `2e6f5989` adds → `00f824f2` -v2 修图床 (加 2 张 Wiki.js 自带图) → `a4fa5a32` -v3 补 Fig 1; Wiki ID 1724, NocoDB Id 3298). The paper is **the first organoid-research ethics / IRB systematic review** Robin has deep-read in any window — fills the methodological gap on the IRB-side that the prior clinical-translation evidence (CDE classification + Order No. 818) does not directly cover. The paper structures the IRB review framework as **7 mandatory points** (sample provenance + donor informed consent + data privacy & de-identification + co-culture agency + animal welfare 3R + cross-border regulation + long-term storage & termination); the cross-border table compares China (《人类遗传资源管理条例》+ 《涉及人的生命科学和医学研究伦理审查办法》2023), US (HIPAA + Common Rule + NIH GDS), EU (GDPR + Clinical Trials Regulation 536/2014), Japan, Korea. The 4-star "与我们的产品" table lists **CelVivo ClinoStar ⭐⭐⭐⭐** (clinical-translation IRB compliance — the 7 mandatory points directly apply to ClinoStar customer IRB submissions; **Robin 推广 ClinoStar 给三甲医院时, 可附带本框架作为增值**) + **Mimetas OrganoPlate ⭐⭐⭐⭐** (co-culture ethics — Mimetas 主营类器官 + 免疫细胞共培养, the co-culture agency framework from Guo 2026 point 4 directly applies) + **Emulate Organ-Chip ⭐⭐⭐** (organoid + microfluidic cross-border regulation reference). **Net-new external evidence** in this run (git-repo-1 2026-08-17). Robin translated the paper into a **customer-facing sales ammunition template** at `templates/类器官IRB申请清单.md` (180 lines; 7 mandatory points checklist + 5 customer Q&A + China vs International flow table + 10 attachments + 7 citations; v1.0 dated 2026-08-16, "Robin 8-16 实战沉淀") — see the templates/ entry in the next bullet. Customer-entry: 临床转化型医院 (class A tertiary hospitals running organoid IRB submissions) + 类器官厂家 Robin 培训客户 (the IRB checklist is the canonical "Robin 培训客户 IRB 申请" core material) + academic PI (cross-border collaboration IRB paperwork). **Track on next fetch** whether (a) the templates/ IRB checklist gets committed, (b) the Robin-author attribution in the template is recognized as a wiki-side customer-training artifact, (c) Robin produces a deep-read synthesis page at `/sources/literature-guo-2026-front-cell-dev-biol-organoid-ethics-deepread.md`, and (d) the IRB checklist routes into the existing CelVivo industrial-customers program (which currently lives at `05-Documents/Products/Celvivo/Industrial-Customers/`) as a standard customer-training artifact.
- **Review/ subfolder — first entry (2026-08-13, still uncommitted at 2026-08-17, 4-day carry-forward, watchlist signal weakening)** — `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` is the **first file in a new `Review/` subfolder** under `04-Literature/Deep-Reads/`. The file is **untracked** at the 2026-08-17 fetch (Robin has not yet committed it — same state as the 2026-08-13 + 2026-08-15 fetches, 0 progress in the 2026-08-13 → 2026-08-17 96-hour window). **Watchlist trigger met at this fetch**: per the 2026-08-15 watchlist-trigger rubric ("if the file remains uncommitted at the next fetch (2026-08-17 or later), the structural signal weakens"), the `Review/` subfolder at the 2026-08-17 fetch is **still single-entry, still untracked** — the structural signal **does weaken** at this fetch (4-day carry-forward with no commit, no follow-up paper landed in the subfolder). The `Review/` subfolder is more likely to be a one-off than a recurring pattern. The file should either be committed on a future fetch (which would re-strengthen the signal) or remain untracked indefinitely (which would confirm the one-off interpretation). No synthesis routes until the file is committed.
- **`templates/` subfolder — first entry (2026-08-16, NEW this run)** — `templates/类器官IRB申请清单.md` (180 lines, mtime 2026-08-16, untracked) is the **first file in a new `templates/` directory** at the vault root. The file is Robin's **first customer-facing sales ammunition template produced from a single deep-read** (the Guo 2026 IRB ethics systematic review). Content: 7 mandatory IRB review points checklist (样本来源/知情同意/数据隐私/共培养主体性/3R 动物福利/跨境监管/长期保存与终止使用) + 5 customer Q&A ("类器官研究要不要 IRB 申请?" / "类器官共培养产品怎么申请 IRB?" / "类器官跨境研究怎么报?" / "3R 原则怎么写?" / "类器官 + 免疫细胞共培养 = CAR-T 体外培养, 算不算新生物体? 伦理上算什么?") + China vs International flow comparison table + 10-row 申请附件清单 + 7 references (Guo 2026 + ISSCR 2021 + OHRP 2016 + GDPR 2018 + China 2023 + China 2019 + Cambridge 2020). The template's `version: v1.0 (2026-08-16, Robin 8-16 实战沉淀)` and `Robin 业务定位: 类器官厂家给三甲医院 IRB 申请的标准模板 + Robin 客户培训材料核心` framing makes it explicit that this is the canonical "Robin 培训客户 IRB 申请" core material. **Structural significance**: the `templates/` directory is new — none of the existing top-level folders (`01-Active-Sales/` / `02-Clients/` / `02-Active-Deals/` / `02-Contacts/` / `03-Product/` / `03-Resources/` / `04-Literature/` / `05-Documents/` / `06-Sales/` / `99-Templates/` / `memory/`) provides a vendor-agnostic customer-training-artifact slot at the vault root. The Obsidian vault already has `99-Templates/` for reusable Obsidian templates (note templates, daily-report templates — per `99-Templates/` size hint 14 .md), but the new `templates/` directory is **for customer-facing sales ammunition**, not Obsidian note templates — a different artifact type. The naming convention overlaps with `99-Templates/` and may need disambiguation; Robin's intent (per the file header) is for this `templates/` to be the **canonical customer-training artifact directory**, distinct from `99-Templates/` Obsidian-note templates. **Customer-entry scenarios** called out in the template: (a) 类器官厂家研发负责人 = IRB 申请准备, (b) Robin 客户开发 = 培训客户 IRB 申请核心材料, (c) 医院 IRB 委员会 = 类器官研究 IRB 审查标准参考, (d) 学术合作方 = 跨境合作时多国法规差异对照. **Carry-forward status** (2026-08-17): untracked, future-commit candidate. **Track on next fetch** whether (a) Robin commits the file to `main`, (b) more templates land in the directory (extending the customer-training-artifact slot), (c) the `templates/` and `99-Templates/` naming overlap gets resolved (rename / docs / conventions). Synthesis routes into `/themes/05-robin-research.md` (sales ammunition pipeline section).
- **`celvivo_commercial/` subfolder — first entry (2026-08-17, NEW this run)** — `celvivo_commercial/1331651_20260630_131201.pdf` (56 KB PDF, mtime 2026-08-17, untracked) is the **first file in a new `celvivo_commercial/` directory** at the vault root. The PDF is the existing 6-30 quote PDF that Robin migrated into a new folder. The file is **a quote PDF**, not a synthesis target — the on-disk evidence is the existing 6-30 quote document that already exists in `05-Documents/Products/Celvivo/Industrial-Customers/` (per the 2026-08-15 synthesis-policy section above, "commercial docs (8 files: Exhibit 1 Price Book / Exhibit 3 SuperUser certification / Huibai demo discount agreement / 惠百 PO 盖章版 / Celvivo Distribution Agreement 2026 Huibai Bio / 1331651_20260630_131201 (6-30 quote) / Packing Slip Ordre 726_1 / Packing Slip Ordre 726_2)"). **Structural significance**: the `celvivo_commercial/` directory is new — Robin has migrated the 6-30 quote out of wherever it was previously (presumably a working folder or `05-Documents/Products/Celvivo/` deep path) into a top-level dedicated directory. **The migration is unfinished** — only 1 file in the new directory; if Robin intends the directory to consolidate all 8 commercial docs from `05-Documents/Products/Celvivo/Industrial-Customers/`, the other 7 files (Exhibit 1 Price Book / Exhibit 3 SuperUser certification / Huibai demo discount agreement / 惠百 PO 盖章版 / Celvivo Distribution Agreement 2026 / Packing Slip Ordre 726_1 / Packing Slip Ordre 726_2) should eventually land here too. **No synthesis routes** until Robin commits the file or migrates more docs into the directory. Carry-forward status (2026-08-17): untracked, single-entry, future-commit candidate. Track on next fetch whether (a) the file gets committed, (b) more commercial docs migrate into the directory.
- **Review/ subfolder — first entry (2026-08-13, still uncommitted at 2026-08-19, 8-day carry-forward, watchlist signal continuing to weaken)** — `obsidian-vault/04-Literature/Deep-Reads/Review/zhou2023_computer_vision_microfluidics.md` is the **first file in a new `Review/` subfolder** under `04-Literature/Deep-Reads/`. The file is **untracked** at the 2026-08-19 fetch (Robin has not yet committed it — same state as the 2026-08-13 + 2026-08-15 + 2026-08-17 + 2026-08-18 fetches, **0 progress in the 2026-08-13 → 2026-08-19 144-hour window**, **6 consecutive fetches silent on the file**). **Watchlist signal continuing to weaken at this fetch**: per the 2026-08-15 watchlist-trigger rubric ("if the file remains uncommitted at the next fetch (2026-08-17 or later), the structural signal weakens"), the `Review/` subfolder at the 2026-08-19 fetch is **still single-entry, still untracked** — the structural signal **continues to weaken** at this fetch (**8-day carry-forward** with no commit, no follow-up paper landed in the subfolder across **6 consecutive fetches**). The `Review/` subfolder is more likely to be a one-off than a recurring pattern. The file should either be committed on a future fetch (which would re-strengthen the signal) or remain untracked indefinitely (which would confirm the one-off interpretation). No synthesis routes until the file is committed.
- **`templates/` subfolder — first entry (2026-08-16, NEW this run)** — `templates/类器官IRB申请清单.md` (180 lines, mtime 2026-08-16, untracked) is the **first file in a new `templates/` directory** at the vault root. The file is Robin's **first customer-facing sales ammunition template produced from a single deep-read** (the Guo 2026 IRB ethics systematic review). Content: 7 mandatory IRB review points checklist (样本来源/知情同意/数据隐私/共培养主体性/3R 动物福利/跨境监管/长期保存与终止使用) + 5 customer Q&A ("类器官研究要不要 IRB 申请?" / "类器官共培养产品怎么申请 IRB?" / "类器官跨境研究怎么报?" / "3R 原则怎么写?" / "类器官 + 免疫细胞共培养 = CAR-T 体外培养, 算不算新生物体? 伦理上算什么?") + China vs International flow comparison table + 10-row 申请附件清单 + 7 references (Guo 2026 + ISSCR 2021 + OHRP 2016 + GDPR 2018 + China 2023 + China 2019 + Cambridge 2020). The template's `version: v1.0 (2026-08-16, Robin 8-16 实战沉淀)` and `Robin 业务定位: 类器官厂家给三甲医院 IRB 申请的标准模板 + Robin 客户培训材料核心` framing makes it explicit that this is the canonical "Robin 培训客户 IRB 申请" core material. **Structural significance**: the `templates/` directory is new — none of the existing top-level folders (`01-Active-Sales/` / `02-Clients/` / `02-Active-Deals/` / `02-Contacts/` / `03-Product/` / `03-Resources/` / `04-Literature/` / `05-Documents/` / `06-Sales/` / `99-Templates/` / `memory/`) provides a vendor-agnostic customer-training-artifact slot at the vault root. The Obsidian vault already has `99-Templates/` for reusable Obsidian templates (note templates, daily-report templates — per `99-Templates/` size hint 14 .md), but the new `templates/` directory is **for customer-facing sales ammunition**, not Obsidian note templates — a different artifact type. The naming convention overlaps with `99-Templates/` and may need disambiguation; Robin's intent (per the file header) is for this `templates/` to be the **canonical customer-training artifact directory**, distinct from `99-Templates/` Obsidian-note templates. **Customer-entry scenarios** called out in the template: (a) 类器官厂家研发负责人 = IRB 申请准备, (b) Robin 客户开发 = 培训客户 IRB 申请核心材料, (c) 医院 IRB 委员会 = 类器官研究 IRB 审查标准参考, (d) 学术合作方 = 跨境合作时多国法规差异对照. **Carry-forward status** (2026-08-19): untracked, **3-day carry-forward** since first observation (2026-08-17 fetch), future-commit candidate. **Track on next fetch** whether (a) Robin commits the file to `main`, (b) more templates land in the directory (extending the customer-training-artifact slot), (c) the `templates/` and `99-Templates/` naming overlap gets resolved (rename / docs / conventions). Synthesis routes into `/themes/05-robin-research.md` (sales ammunition pipeline section).
- **`celvivo_commercial/` subfolder — first entry (2026-08-17, NEW this run)** — `celvivo_commercial/1331651_20260630_131201.pdf` (56 KB PDF, mtime 2026-08-17, untracked) is the **first file in a new `celvivo_commercial/` directory** at the vault root. The PDF is the existing 6-30 quote PDF that Robin migrated into a new folder. The file is **a quote PDF**, not a synthesis target — the on-disk evidence is the existing 6-30 quote document that already exists in `05-Documents/Products/Celvivo/Industrial-Customers/` (per the 2026-08-15 synthesis-policy section above, "commercial docs (8 files: Exhibit 1 Price Book / Exhibit 3 SuperUser certification / Huibai demo discount agreement / 惠百 PO 盖章版 / Celvivo Distribution Agreement 2026 Huibai Bio / 1331651_20260630_131201 (6-30 quote) / Packing Slip Ordre 726_1 / Packing Slip Ordre 726_2)"). **Structural significance**: the `celvivo_commercial/` directory is new — Robin has migrated the 6-30 quote out of wherever it was previously (presumably a working folder or `05-Documents/Products/Celvivo/` deep path) into a top-level dedicated directory. **The migration is unfinished** — only 1 file in the new directory; if Robin intends the directory to consolidate all 8 commercial docs from `05-Documents/Products/Celvivo/Industrial-Customers/`, the other 7 files (Exhibit 1 Price Book / Exhibit 3 SuperUser certification / Huibai demo discount agreement / 惠百 PO 盖章版 / Celvivo Distribution Agreement 2026 / Packing Slip Ordre 726_1 / Packing Slip Ordre 726_2) should eventually land here too. **No synthesis routes** until Robin commits the file or migrates more docs into the directory. Carry-forward status (2026-08-19): untracked, single-entry, **3-day carry-forward** since first observation (2026-08-17 fetch), future-commit candidate. Track on next fetch whether (a) the file gets committed, (b) more commercial docs migrate into the directory.
- **2026-08-15 sources-sync bug — count-data wipe (operational)** — the `2507925e27b83b4f9d2e6f3b9c939d081a90f9f2` `chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-15)` commit at 2026-08-15 +0800 02:31 committed **empty count values** for NocoDB / Wiki.js / RAGFlow (SeaFile was already empty so the commit was a no-op there): (a) NocoDB: 6614 → **0** total records, with all 13 per-table counts (brain_organoid_literature / intestinal_organoid_literature / Celvivo_literature / cardiac_organoid_literature / cancer_organoid_literature / liver_organoid_literature / other_organoid_literature / kidney_organoid_literature / retinal_organoid_literature / Cellink_literature / organoid_literature_old / lung_organoid_literature / 3Brain_literature) cleared to empty cells; (b) SeaFile: libraries table unchanged (was empty in `1737454` already — a separate, older cron issue not introduced by `2507925`); (c) Wiki.js: 83 → **0** unique pages, ID range 22..1704 → **0..0**, Locale 分布 → empty, Top-level 路径分布 → empty; (d) RAGFlow: landing 200 → **000**, `/api/v1/health` 404 → **000**, `/api/v1/datasets` 401 → **000**. The header lines on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page still report `上次同步: 2026-08-14T18:30:42Z` (the prior successful sync timestamp), but the body count values are wiped. **Probable root cause**: the auto-source-sync CRON job ran but the underlying NocoDB / Wiki.js / RAGFlow API calls failed (likely the same operational issue already documented on `/sources/web-search.md` and `/sources/README.md` — runtime registry disagreement on `enabled: true` vs. disabled); the script committed the empty values instead of skipping the commit on failure. **Impact**: 3 source pages now show misleading zero/null values (NocoDB / Wiki.js / RAGFlow); Tavily / HN / git-repo synthesis is unaffected. **Recovery**: the wiped data is recoverable from the prior wiki commit (`git show 1737454:sources/nocodb.md` etc. will restore the pre-wipe state). This run restored the wiped data on all 3 affected pages (plus an operational note documenting the bug) so the wiki is internally consistent again. **Wiki-synthesis concern**: **none** — the synthesis layer (themes / commitments / open-questions / personal-logistics) is independent of the source-page counters. **Operational concern**: **yes** — the auto-source-sync job should (a) check connectivity before committing, (b) skip the commit on API failure rather than committing empty values, or (c) preserve the prior counter values when a fresh pull returns null/empty. Recorded for traceability here + on each affected `/sources/{nocodb,ragflow,seafile,wikijs}.md` page.
- **Liang 2026 liver organoid fibrosis platform (2026-08-12)** — `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (170 lines; `[[MOC-类器官与3D培养]]` already names this paper via `related:` back-link). The paper is **the net-new external evidence** this run (git-repo-1 2026-08-12) brought into the vault; see synthesis at `/themes/01-organoid-equipment.md` § CelVivo evidence (added 2026-08-12) and `/commitments.md` `liang-2026-celvivo-clinostar-positioning`. Single-paper LDR cycle: 4 commits (`e542c977` → `8699a154` → `aacba7aa` → `297f106d`) walked Robin's standard 3-stage SOP on the same file (186 lines → 105+/122- page 946 rewrite → page 934 修齐 micro-revisions). The 4-star "与我们的产品" table on the paper lists **CelVivo ClinoStar ⭐⭐⭐⭐** (P1-P10 长程扩增对应旋转培养 30+ 天无剪切; HSC 静止态在模拟微重力下 7+ 天维持) + **CelVivo ClinoReactor ⭐⭐⭐⭐** (单组织 3 轨道分通道灌流; TGFβ 时间程序精确切换) — **parallel CelVivo ClinoStar rating 5 to Miao 2025 v2's ClinoStar rating 5** from the 2026-08-08 flywheel-sync, but for liver organoid (long-term maturation + fibrosis modeling) rather than lung organoid (vascularization). 7 SeaFile Fig (Fig1-7) + 4-paper 参考文献 (Huch 2013 / Huch 2015 / Clevers 2016). Customer-entry: 药企临床前 (抗纤维化药筛) + 临床肝活检中心 (1-2 mg → 3 周药敏) + 学术 PI (2D vs 3D 旋转 efficiency). **MOC linkage**: the paper's `related:` field already names `[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) — confirming the MOC pattern is in active use on real deep-reads.
- **CelVivo industrial customers program** — a dedicated subfolder under
@@ -698,7 +731,77 @@ fields still 待补).
## Synthesis policy for this source
- **This run (2026-08-18, git-repo-1 18:10Z):** **0 new vault commits**
- **This run (2026-08-19, git-repo-1 18:08Z):** **0 new vault commits**
in the 2026-08-18T18:10Z → 2026-08-19T18:08Z 24-hour window — the
vault HEAD is **unchanged at `a4fa5a32`** for the **3rd consecutive
fetch** (the 2026-08-16 Quintard 2024 Nat Commun 4-commit LDR cycle
+ Guo 2026 Front Cell Dev Biol 3-commit LDR cycle remain the most
recent vault activity, **3 calendar days stale** at this fetch).
**0 new vault mtime changes** — the 2 untracked directories
(`celvivo_commercial/` + `templates/`) and the 23+ untracked files
from the 2026-08-17T18:09Z fetch carry forward unchanged. The
`Review/zhou2023_computer_vision_microfluidics.md` first-entry in the
new `Review/` subfolder is **8-day carry-forward** at this fetch
(uncommitted since 2026-08-11); the structural signal for `Review/`
continues to weaken per the Notable-entity entry (the subfolder has
been a single-entry watchlist since 2026-08-13, now **6 fetches
silent**). Wiki-side: **2 new automated wiki commits** landed in
the 24-hour window — `7e904ec` chore: daily update 2026-08-19
(2026-08-19 02:23 +0800) + `dcb53a2` chore(sources): refresh
NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-19,
2026-08-19 02:30 +0800) — advancing wiki HEAD from `1fc73ae`
(2026-08-18T18:10Z fetch) to `dcb53a2`. Both commits are routine
auto-orchestration: (a) the `7e904ec` daily update carried the
synthesis-layer edits from the prior HN-1 2026-08-19T18:00Z +
web-search-1 2026-08-19 + git-repo-1 2026-08-18T18:10Z runs
(touching `.last-update.json` + `quickstart.md` +
`sources/{README,git-repo,hackernews,index,nocodb,ragflow,seafile,web-search,wikijs}.md`
+ `themes/05-robin-research.md` per `git show --stat 7e904ec`);
(b) the `dcb53a2` sources-sync re-applied the count-data wipe
pattern on NocoDB / SeaFile / Wiki.js / RAGFlow for the **fifth**
consecutive sources-sync (after 2026-08-15 `2507925` + 2026-08-16
`997b648` + 2026-08-17 `be49285` + 2026-08-18 `1fc73ae`).
**No new external evidence** in this run (vault silent), **no
new theme row**, **no new commitment row**, **no new open-question
row**, **no new personal-logistics item** — the synthesis layer
is unchanged. Wiki edits this run: (a) `/sources/git-repo.md` (this
page) — refreshed frontmatter HEAD pointers (vault HEAD unchanged at
`a4fa5a32`, wiki HEAD `1fc73ae` → `dcb53a2`, tags + `2026-08-19`,
timestamp → `2026-08-19T18:08:24Z`), refreshed the Connector /
State section to the new `2026-08-19T18-08-24-164Z` raw manifest,
refreshed the obsidian-vault working-tree-status section to
2026-08-19 (0 new commits, 0 new mtime changes, untracked set
unchanged), refreshed the openwiki-wiki working-tree-status section
to 2026-08-19 (2 new automated wiki commits + the carry-forward 10
uncommitted synthesis-layer edits — `sources/index.md` re-appears
as dirty in the working tree at this fetch), added 2 new entries at
the top of the Recent-commits-for-wiki table (`dcb53a2` +
`7e904ec`), refreshed the Summary-of-last-48-hours table to add the
2026-08-18T18:10Z → 2026-08-19T18:08Z window data (0 vault commits /
2 wiki commits / operational row noting the **fifth** consecutive
sources-sync re-applying the count-data wipe pattern), refreshed
the Synthesis-policy section with this run's delta summary; (b)
`/themes/05-robin-research.md` — vault-snapshot metadata refreshed
(fetch timestamp → `2026-08-19T18:08:24Z`, raw-manifest path → the
new `2026-08-19T18-08-24-164Z` manifest); the vault HEAD pointer
stays `a4fa5a32` (unchanged across the 2026-08-17 + 2026-08-18 +
2026-08-19 fetches); (c) `/quickstart.md` — added the "Latest update
— git-repo-1 (2026-08-19T18:08Z)" paragraph; updated the Backlog
git-repo entry to reflect the new wiki HEAD `dcb53a2` + 2 new
automated wiki commits + the carry-forward 10 uncommitted files +
the **fifth** consecutive sources-sync note. **No `/themes.md` row
change, no `/commitments.md` row, no `/open-questions.md` row, no
`/personal-logistics.md` item** — the vault delta is empty and the
wiki delta is automated maintenance only. The "vault is silent on
a 24-hour window" pattern continues to be normal cadence for Robin's
workflow (the 2026-08-13 + 2026-08-15 + 2026-08-18 fetches were
also 0-new-vault-commits daily-cycle follow-ups; the 2026-08-19
fetch makes it **4 consecutive 0-new-vault-commit fetches**).
The synthesis layer (themes / commitments / open-questions /
personal-logistics) is independent of the wiki-side automated
maintenance commits.
- **Previous run (2026-08-18, git-repo-1 18:10Z):** **0 new vault commits**
in the 2026-08-17T18:09Z → 2026-08-18T18:10Z 24-hour window — the
vault HEAD is **unchanged at `a4fa5a32`** (the 2026-08-16 Quintard
2024 Nat Commun 4-commit LDR cycle + Guo 2026 Front Cell Dev Biol
@@ -764,7 +867,7 @@ fields still 待补).
commitments / open-questions / personal-logistics) is independent
of the wiki-side automated maintenance commits.
- **This run (2026-08-17, git-repo-1 18:09Z):** **7 new vault commits**
- **Previous run (2026-08-17, git-repo-1 18:09Z):** **7 new vault commits**
landed in the 2026-08-15T18:07Z → 2026-08-17T18:09Z window — the vault
HEAD bumped from `297f106d` (the 2026-08-12 Liang 2026 cluster) to
`a4fa5a32` (the 2026-08-16 Quintard 2024 + Guo 2026 cluster). The