chore: daily update 2026-09-12
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@@ -2,8 +2,8 @@
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type: "Reference"
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title: "Sources"
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description: "Per-connector evidence indexes and ingestion coverage for the local knowledge wiki; durable synthesis lives on canonical pages."
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tags: [sources, connectors, evidence, ingestion, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, vault-silent-7d, vault-silent-8d, vault-silent-9d, twenty-fourth-sources-sync, twenty-fifth-sources-sync, twenty-sixth-sources-sync, ninth-vault-silence-fetch, twenty-sixth-git-repo-fetch]
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timestamp: 2026-09-10T18:14:31Z
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tags: [sources, connectors, evidence, ingestion, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, vault-silent-7d, vault-silent-8d, vault-silent-9d, vault-silence-broken, vault-resumed-after-11d, twenty-fourth-sources-sync, twenty-fifth-sources-sync, twenty-sixth-sources-sync, twenty-seventh-sources-sync, twenty-eighth-sources-sync, ninth-vault-silence-fetch, twenty-sixth-git-repo-fetch, twenty-ninth-git-repo-fetch, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink]
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timestamp: 2026-09-11T18:14:00Z
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---
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# Sources
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@@ -15,7 +15,7 @@ Per-connector evidence indexes. Each connector gets its own page (for example `g
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| Connector | Page | Status |
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| --- | --- | --- |
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| Hacker News (`hackernews-1`, LLM-agent topics) | [/sources/hackernews.md](/sources/hackernews.md) | active (last 2026-08-27 18:00 UTC — **seventeenth pull since 2026-08-07**; the 2026-08-27 pull surfaces **the first non-fully-zero / non-clean-zero Algolia lane since the 2026-08-22 noise-only pull** — `organoid` 10 substring-noise hits (all `organiz-` collisions) + `3Brain` 9 substring-noise hits (all `brain` collisions) + `Cellink` 4 substring-noise hits (all `clink`/`calling` collisions) + **`deepagents` 1 thematic hit — the first positive `deepagents` Algolia hit in the 2026-08-07 streak**: `49461911` "LangChain-AI/deepagents: agent harness" 1 pt, 0 cmts, github.com/langchain-ai/deepagents — the canonical LangChain `deepagents` repo framing itself as "agent harness"); `CelVivo` and `openwiki` returned 0 hits (clean zero); the 2026-08-23 + 2026-08-24 + 2026-08-25 + 2026-08-26 fully-zero pulls are four consecutive fully-zero Algolia lanes bookended by the 2026-08-22 + 2026-08-27 substring-noise-only pulls, the longest fully-zero streak of the 2026-08-07 streak to date; the empty-pulls-on-vendor-queries cadence is normal under the 6-query LLM-agent topic set, not an outage, no config-side intervention needed; the strongest named-stack-adjacent items on the 2026-08-27 pull are `49458161` "Nvidia agrees to acquire Hugging Face for $13B" 1719 pts + 802 cmts top+best (**highest-engagement item of the pull**; **highest-engagement item of the entire 2026-08-07 streak to date**, surpassing Dolly Parton obituary 1535 pts + AWS DuckDB 762 pts + FT Anthropic 738 pts; the **largest AI-infrastructure consolidation event** of the 2026-08 streak, nearly twice the 2026-08-17 Stripe-OpenRouter $7B+ acquisition; cross-walks to the `MiniMax-m3` row's open-weight comparison anchor — Hugging Face is the canonical distribution channel for DeepSeek V4 Flash / GLM / Qwen / Llama; adjacent-not-promoted per scope — Hugging Face is not on Robin's named stack) + `49458418` "CEO fired developers to make room for AI. Developers create open source AI CEO" 890 pts + 608 cmts best (SenteLabsAI/OpenExecutive — **second-highest-engagement item on the pull**; meta-statement about agent-as-orchestrator-of-agents; adjacent-not-promoted per scope — community open-source project, not on Robin's named stack) + `49454314` "The Hugging Face incident and the road ahead" 324 pts + 417 cmts top+best (OpenAI blog — **direct corollary to the Nvidia-HF acquisition**; **highest comment-vs-upvote ratio of the pull** at 1.29, substantive debate per upvote; adjacent-not-promoted per scope — upstream AI-vendor competitive context) + `49466917` "Small Models Have Arrived" 135 pts + 46 cmts top (calv.info — **strongest local-LLM-adjacent item of the pull by direct cross-walk** to the `MiniMax-m3` row's open-weight local-LLM lane; adjacent-not-promoted per scope — small-models essays are upstream local-LLM context) + `49461911` "LangChain-AI/deepagents: agent harness" 1 pt (LangChain's official GitHub — **7th entry in the self-hosted-agentic-substrate cluster**, ending the cooling-density pattern of the past 3 pulls; cluster density now 0.50 entries/day over 14 days, total cluster engagement 792 pts across 7 items, strongest cluster diversity of the streak — independent vendors + personal-blog essays + definitional essays + the canonical open-source LLM framework; adjacent-not-promoted per scope — substrate-protocol pointer, not a Robin-named-stack change); four secondary adjacents stay adjacent-not-promoted: `49465461` "The Teaser Period: Why the AI Boom Is Hitting a Reset Wall" 64 pts + 57 cmts top (groundbrkr.com — AI-boom-reset commentary, Nvidia-HF-adjacent); `49458875` "Humanity has the debate about AI consciousness backwards" 35 pts + 86 cmts top (Economist — AI-consciousness essay, **highest comment-vs-upvote ratio of the secondary adjacents** at 2.46); `49466052` "Nvidia projects $673B in sales as AI demand widens" 77 pts + 61 cmts top (forgeeks.net — Nvidia-business forecast adjacent); `49467551` "Show HN: My Claude quota ran out in 10 minutes" 34 pts + 17 cmts top (github.com/kelviq/tare — **fourth Claude Code traceability item of the streak**). The 2026-08-26 pull (prior) added four named-stack-adjacent items — `49449507` "GLM-5.3-Flash" 530 pts top (Z.ai blog — **strongest open-weight-LLM-adjacent item of the pull by inference-lane impact**; **highest engagement open-weight-LLM item of the 2026-08-07 streak**; **eighth open-weight-LLM-adjacent item in the streak** — DeepSeek V4 Flash vision 379 pts 2026-08-21 + Unsloth Dynamic 3.0 GGUFs 314 pts 2026-08-19 + GLM-5.3 vs Anthropic/OpenAI 141 pts 2026-08-23 + Qwen 3.8 27B reverse-engineering 234 pts 2026-08-23 + GLM-5.3 tablet 268 pts 2026-08-23 + Qwen 3.8-Flash-Next 244 pts 2026-08-25 + **GLM-5.3-Flash 530 pts 2026-08-26** — **2,551+ pts across 8 top-feed items in 6 pulls over 9 days**, the **strongest sustained engagement cluster in the 2026-08-07 streakLine truncated
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| Git repo (`git-repo-1`, Obsidian vault + OpenWiki wiki) | [/sources/git-repo.md](/sources/git-repo.md) | active (last 2026-09-09 18:11 UTC — vault HEAD unchanged at `391e4713` for the 9th consecutive fetch since the 2026-08-31 THIRD 5-paper CelVivo LDR burst, **0 new vault commits** in the 2026-09-08T18:07Z → 2026-09-09T18:11Z 24-hour window, **vault silent for the 9th consecutive fetch**, **9 calendar days stale**); the 4 carry-forward untracked directories bumped carry-forward at the 2026-09-09T18:11Z fetch to 29/24/24/17-day (the highest carry-forward durations of the 2026-08-07 streak); 2 new automated wiki commits since the 2026-09-08T18:07Z fetch (`f7450e9` chore: daily update 2026-09-09 + `7e2072c` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-09 — the **twenty-sixth** consecutive sources-sync re-applying the count-data wipe pattern after `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15); wiki HEAD bumped `556d937d54b58f2dfb157567725b84251cd01f91` → `7e2072cef52a842ccde9daab27ad82699c9e127c` over the 2026-09-09 window; the `f7450e9` daily update on 2026-09-09 re-touched 16 files including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/web-search.md` + `themes/05-robin-research.md` + `themes/index.md`, then the `7e2072c` sources-sync re-touched `sources/{nocodb,ragflow,seafile,wikijs}.md` and the synthesis edits left **10 uncommitted wiki files** (`M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) — **10-dirty-file baseline, same as the 2026-09-08T18:07Z fetch**; the synthesis layer remains unchanged from the 2026-08-31 CelVivo-anchored deep-read cluster. Prior 2026-09-08 daily update `57be545` + 2026-09-08 sources-sync `556d937` (the **twenty-fifth** consecutive sources-sync) bumped wiki HEAD to `556d937` + left 10-dirty-file baseline; the 2026-08-31 daily update `c9e2770` (single-connector raw-data refresh combining HN-1 + git-repo-1 + web-search-1 skipped) + 2026-08-31 sources-sync `9582dea` (the **seventeenth** consecutive sources-sync) bumped wiki HEAD to `9582dea` + bumped dirty count to 11; the 2026-08-31 git-repo-1 fetch (vault HEAD bumped `9d4767c7` → `391e4713`, 5 new vault commits, ending the 5-day vault silence) is the THIRD consecutive single-day 5-paper CelVivo LDR burst (Yan + Stewart + Nguyen + Aiello + Miao all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V parallel subfolder — Robin's first parallel-naming deep-read subfolder convention) — see [`/sources/git-repo.md`](/sources/git-repo.md) for the full 2026-08-31 fetch delta; the 2026-09-01T18:07Z + 2026-09-02T18:16Z + 2026-09-03T18:09Z + 2026-09-04T18:12Z + 2026-09-05T18:18Z + 2026-09-06T18:19Z + 2026-09-07T18:08Z + 2026-09-08T18:07Z + **2026-09-09T18:11Z** fetches observed vault HEAD unchanged at `391e4713` for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + **9th** consecutive fetch since the 2026-08-31 cluster (**0 new vault commits**, **9 calendar days stale**), bumped the 4 carry-forward untracked directories to 29/24/24/17-day carry-forward (the highest carry-forward durations of the 2026-08-07 streak), bumped wiki HEAD to `7e2072cef52a842ccde9daab27ad82699c9e127c` via 2 automated wiki commits at the 2026-09-09T18:11Z fetch (`f7450e9` daily update 2026-09-09 + `7e2072c` sources-sync 2026-09-09 — the **twenty-sixth** consecutive sources-sync); the synthesis layer (themes / commitments / open-questions / personal-logistics) is independent of the wiki-side automated maintenance commits and remains unchanged from the 2026-08-31 CelVivo-anchored deep-read cluster) |
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| Git repo (`git-repo-1`, Obsidian vault + OpenWiki wiki) | [/sources/git-repo.md](/sources/git-repo.md) | active (last 2026-09-11 18:14 UTC — **vault HEAD bumped** from `391e4713` → **`09bec367`** with **2 new vault commits** ending the **11-day vault silence streak**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); the 4 carry-forward untracked directories bumped carry-forward at the 2026-09-11T18:14Z fetch to **30/25/25/18-day** (the highest carry-forward durations of the 2026-08-07 streak); **4 new automated wiki commits** since the 2026-09-09T18:11Z fetch (`299eeab` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync + `1e6a7cb` chore: daily update 2026-09-10 + `2bf104e` chore: daily update 2026-09-11 + `55d930f` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the count-data wipe pattern after `299eeab` 2026-09-10 + `7e2072c` 2026-09-09 + `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15); wiki HEAD bumped `7e2072cef52a842ccde9daab27ad82699c9e127c` → `55d930ffbc0a658aa335683f0d412496b32af549` over the 2026-09-10T18:19Z → 2026-09-11T18:14Z window; the `55d930f` sources-sync on 2026-09-11 re-touched `sources/{nocodb,ragflow,seafile,wikijs}.md` and the synthesis edits left **10 uncommitted wiki files** (`M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) — **10-dirty-file baseline, same as the 2026-09-10T18:19Z fetch** + **1 new untracked `NO` file** (stray test artifact); the synthesis layer is **substantively updated** because vault produced 2 new external-evidence papers (Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering) — the `class-organoid-3d-bioprinting` row on `/themes.md` gets a Last-seen bump 2026-08-25 → 2026-09-11 + Evidence count 37+ → 39+. Prior 2026-09-10 sources-sync `299eeab` (the **twenty-seventh** consecutive sources-sync) bumped wiki HEAD to `299eeab`; the prior 2026-09-09 daily update `f7450e9` + 2026-09-09 sources-sync `7e2072c` (the **twenty-sixth** consecutive sources-sync) bumped wiki HEAD to `7e2072c`; the 2026-08-31 daily update `c9e2770` (single-connector raw-data refresh combining HN-1 + git-repo-1 + web-search-1 skipped) + 2026-08-31 sources-sync `9582dea` (the **seventeenth** consecutive sources-sync) bumped wiki HEAD to `9582dea` + bumped dirty count to 11; the 2026-08-31 git-repo-1 fetch (vault HEAD bumped `9d4767c7` → `391e4713`, 5 new vault commits, ending the 5-day vault silence) is the THIRD consecutive single-day 5-paper CelVivo LDR burst (Yan + Stewart + Nguyen + Aiello + Miao all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V parallel subfolder — Robin's first parallel-naming deep-read subfolder convention) — see [`/sources/git-repo.md`](/sources/git-repo.md) for the full 2026-08-31 fetch delta; the 2026-09-01T18:07Z + 2026-09-02T18:16Z + 2026-09-03T18:09Z + 2026-09-04T18:12Z + 2026-09-05T18:18Z + 2026-09-06T18:19Z + 2026-09-07T18:08Z + 2026-09-08T18:07Z + 2026-09-09T18:11Z + 2026-09-10T18:19Z fetches observed vault HEAD unchanged at `391e4713` for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th + **10th** consecutive fetch since the 2026-08-31 cluster (**0 new vault commits**, **10 calendar days stale** at the 2026-09-10T18:19Z fetch), bumped the 4 carry-forward untracked directories to 30/24/24/17-day carry-forward at the 2026-09-10T18:19Z fetch (the highest carry-forward durations of the 2026-08-07 streak), bumped wiki HEAD to `299eeab31926fd8a3afd9e9feb510a21db7a69db` via 1 automated wiki commit at the 2026-09-10T18:19Z fetch (`299eeab` sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync); the synthesis layer (themes / commitments / open-questions / personal-logistics) was unchanged at each of these vault-silent fetches because vault produced no new external evidence; **the 2026-09-11T18:14Z fetch observes the vault-silence-streak-broken event** with 2 new vault commits — the synthLine truncated
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| Web Search (`web-search-1`, Tavily) | [/sources/web-search.md](/sources/web-search.md) | active (latest pull 2026-08-03; 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, 2026-08-19, 2026-08-20, 2026-08-21, 2026-08-22, 2026-08-23, 2026-08-24, 2026-08-25, 2026-08-27, 2026-08-28, 2026-08-29, 2026-08-30, 2026-08-31, 2026-09-01, 2026-09-02, 2026-09-03, and 2026-09-04 update attempts skipped — connector not enabled, `TAVILY_API_KEY` missing; **twenty-second consecutive skip on the same code path** including 2026-09-04) |
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Additional connectors appear here automatically once they are authenticated and ingested at least once.
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@@ -30,7 +30,7 @@ Additional connectors appear here automatically once they are authenticated and
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| X / Twitter | not configured | `OPENWIKI_X_ACCESS_TOKEN` via `openwiki auth x` | Streams: `home_timeline`, `user_posts`, `mentions`, `bookmarks`, `list_posts`. |
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| Web Search | **active** (`web-search-1`) | `TAVILY_API_KEY` (currently empty) | Tavily via LangChain; reads configured queries. Latest successful pull 2026-08-03 18:08 UTC; the 2026-08-08, 2026-08-10, 2026-08-12, 2026-08-15, 2026-08-17, 2026-08-18, 2026-08-19, 2026-08-20, 2026-08-21, 2026-08-22, 2026-08-23, 2026-08-24, 2026-08-25, 2026-08-27, 2026-08-28, 2026-08-29, 2026-08-30, 2026-08-31, 2026-09-01, 2026-09-02, 2026-09-03, 2026-09-04, 2026-09-05, 2026-09-06, 2026-09-07, 2026-09-08, 2026-09-09, and 2026-09-10 update attempts were skipped because the connector was not enabled in the runtime registry (**twenty-eighth consecutive skip on the same code path** including 2026-09-10; nightly searxng-fallback slot for the 24-hour windows is also empty on disk). Evidence at [/sources/web-search.md](/sources/web-search.md). |
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| Hacker News | **active** (`hackernews-1`) | _(public, no auth)_ | Public feeds (`top`, `new`, `best`) + Algolia HN search queries. Source-specific query set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` (LLM-agent topics per the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories"). Last successful pull 2026-08-27 18:00 UTC — **seventeenth pull since 2026-08-07** with a **substring-noise-only + 1 thematic `deepagents` hit Algolia lane** (after the 2026-08-08 03:15 + 2026-08-08 18:00 + 2026-08-13 + 2026-08-15 + 2026-08-16 + 2026-08-18 + 2026-08-19 + 2026-08-21 + 2026-08-23 + 2026-08-24 + 2026-08-25 + 2026-08-26 fully-zero pulls + the 2026-08-10 + 2026-08-12 + 2026-08-17 + 2026-08-20 + 2026-08-22 + 2026-08-27 noise-only pulls; the **2026-08-23 + 2026-08-24 + 2026-08-25 + 2026-08-26 fully-zero Algolia lanes form a 4-day streak**, the **longest fully-zero Algolia streak of the 2026-08-07 streak to date**, bookended by the 2026-08-22 + 2026-08-27 substring-noise-only pulls; empty-pulls-on-vendor-queries is normal cadence, not an outage, no config-side intervention needed). The 2026-08-27 pull recorded **five adjacents worth flagging for traceability** — `49458161` "Nvidia agrees to acquire Hugging Face for $13B" 1719 pts + 802 cmts top+best (**highest-engagement item of the pull**; **highest-engagement item of the entire 2026-08-07 streak to date**, surpassing Dolly Parton obituary 1535 pts + AWS DuckDB 762 pts + FT Anthropic 738 pts; the **largest AI-infrastructure consolidation event** of the 2026-08 streak, nearly twice the 2026-08-17 Stripe-OpenRouter $7B+ acquisition; cross-walks to the `MiniMax-m3` row's open-weight comparison anchor — Hugging Face is the canonical distribution channel for DeepSeek V4 Flash / GLM / Qwen / Llama; adjacent-not-promoted per scope — Hugging Face is not on Robin's named stack) + `49458418` "CEO fired developers to make room for AI. Developers create open source AI CEO" 890 pts + 608 cmts best (SenteLabsAI/OpenExecutive — **second-highest-engagement item on the pull**; meta-statement about agent-as-orchestrator-of-agents; adjacent-not-promoted per scope — community open-source project, not on Robin's named stack) + `49454314` "The Hugging Face incident and the road ahead" 324 pts + 417 cmts top+best (OpenAI blog — **direct corollary to the Nvidia-HF acquisition**; **highest comment-vs-upvote ratio of the pull** at 1.29, substantive debate per upvote; adjacent-not-promoted per scope — upstream AI-vendor competitive context) + `49466917` "Small Models Have Arrived" 135 pts + 46 cmts top (calv.info — **strongest local-LLM-adjacent item of the pull by direct cross-walk** to the `MiniMax-m3` row's open-weight local-LLM lane; adjacent-not-promoted per scope — small-models essays are upstream local-LLM context) + `49461911` "LangChain-AI/deepagents: agent harness" 1 pt (LangChain's official GitHub — **7th entry in the self-hosted-agentic-substrate cluster**, ending the cooling-density pattern of the past 3 pulls; cluster density now 0.50 entries/day over 14 days, total cluster engagement 792 pts across 7 items, strongest cluster diversity of the streak — independent vendors + personal-blog essays + definitional essays + the canonical open-source LLM framework; adjacent-not-promoted per scope — substrate-protocol pointer, not a Robin-named-stack change); four secondary adjacents stay adjacent-not-promoted: `49465461` "The Teaser Period: Why the AI Boom Is Hitting a Reset Wall" 64 pts + 57 cmts top (groundbrkr.com — AI-boom-reset commentary, Nvidia-HF-adjacent); `49458875` "Humanity has the debate about AI consciousness backwards" 35 pts + 86 cmts top (Economist — AI-consciousness essay, **highest comment-vs-upvote ratio of the secondary adjacents** at 2.46); `49466052` "Nvidia projects $673B in sales as AI demand widens" 77 pts + 61 cmts top (forgeeks.net — Nvidia-business forecast adjacent); `49467551` "Show HN: My Claude quota ran out in 10 minutes" 34 pts + 17 cmts top (github.com/kelviq/tare — **fourth Claude Code traceability item of the streak**). The 2026-08-26 pull (prior) added four named-stack-adjacent items — `49449507` "GLM-5.3-Flash" 530 pts top (Z.ai blog — **strongest open-weight-LLM-adjacent item of the pull by inference-lane impact**; **highest engagement open-weight-LLM item of the 2026-08-07 streak**; **eighth open-weight-LLM-adjacent item in the streak** — DeepSeek V4 Flash vision 379 pts 2026-08-21 + Unsloth Dynamic 3.0 GGUFs 314 pts 2026-08-19 + GLM-5.3 vs Anthropic/OpenAI 141 pts 2026-08-23 + Qwen 3.8 27B reverse-engineering 234 pts 2026-08-23 + GLM-5.3 tablet 268 pts 2026-08-23 + Qwen 3.8-Flash-Next 244 pts 2026-08-25 + **GLM-5.3-Flash 530 pts 2026-08-26** — **2,551+ pts across 8 top-feed items in 6 pulls over 9 days**, the **strongest sustained engagement cluster in the 2026-08-07 streak**; Z.ai flash-tier framing mirrors the V4-Flash + Qwen-FlLine truncated
|
||||
| Git repo | **active** (`git-repo-1`) | local repo path | Local Obsidian vault at `/home/ldw/workspace` + OpenWiki wiki at `/home/ldw/.openwiki/wiki` (two configured repos per `~/.openwiki/connectors/git-repo/config.json`). Writes compact manifest; repo itself is source of truth. Evidence at [/sources/git-repo.md](/sources/git-repo.md). Last updated 2026-09-09 18:11 UTC — vault HEAD unchanged at `391e4713` for the **9th consecutive fetch** since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR burst, **0 new vault commits** in the 2026-09-08T18:07Z → 2026-09-09T18:11Z 24-hour window, **vault silent for the 9th consecutive fetch**, **9 calendar days stale**); the 4 carry-forward untracked directories bumped carry-forward at the 2026-09-09T18:11Z fetch to 29/24/24/17-day (the highest carry-forward durations of the 2026-08-07 streak); 2 new automated wiki commits since the 2026-09-08T18:07Z fetch on 2026-09-09 (`f7450e9` chore: daily update 2026-09-09 + `7e2072c` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-09 — the **twenty-sixth** consecutive sources-sync re-applying the count-data wipe pattern); wiki HEAD bumped `556d937d54b58f2dfb157567725b84251cd01f91` → `7e2072cef52a842ccde9daab27ad82699c9e127c` over the 2026-09-09 window; the `f7450e9` daily update on 2026-09-09 re-touched 16 files, then the `7e2072c` sources-sync re-touched `sources/{nocodb,ragflow,seafile,wikijs}.md` and the synthesis edits left **10 uncommitted wiki files** (`M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) — **10-dirty-file baseline, same as the 2026-09-08T18:07Z fetch**; the synthesis layer remains unchanged. The 2026-09-08 daily update `57be545` + 2026-09-08 sources-sync `556d937` (the **twenty-fifth** consecutive sources-sync) bumped wiki HEAD to `556d937` + left 10-dirty-file baseline; the 2026-08-31 daily update `c9e2770` (single-connector raw-data refresh combining HN-1 + git-repo-1 + web-search-1 skipped) + 2026-08-31 sources-sync `9582dea` (the **seventeenth** consecutive sources-sync) bumped wiki HEAD to `9582dea` + bumped dirty count to 11; the 2026-08-31 git-repo-1 fetch (vault HEAD bumped `9d4767c7` → `391e4713`, 5 new vault commits, ending the 5-day vault silence) is the THIRD consecutive single-day 5-paper CelVivo LDR burst (Yan + Stewart + Nguyen + Aiello + Miao all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V parallel subfolder — Robin's first parallel-naming deep-read subfolder convention). The 2026-09-01T18:07Z + 2026-09-02T18:16Z + 2026-09-03T18:09Z + 2026-09-04T18:12Z + 2026-09-05T18:18Z + 2026-09-06T18:19Z + 2026-09-07T18:08Z + 2026-09-08T18:07Z + **2026-09-09T18:11Z** fetches observed vault HEAD unchanged at `391e4713` for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + **9th** consecutive fetch since the 2026-08-31 cluster (**0 new vault commits**, **9 calendar days stale**), bumped the 4 carry-forward untracked directories to 29/24/24/17-day carry-forward (the highest carry-forward durations of the 2026-08-07 streak); the synthesis layer remains unchanged from the 2026-08-31 CelVivo-anchored deep-read cluster. |
|
||||
| Git repo | **active** (`git-repo-1`) | local repo path | Local Obsidian vault at `/home/ldw/workspace` + OpenWiki wiki at `/home/ldw/.openwiki/wiki` (two configured repos per `~/.openwiki/connectors/git-repo/config.json`). Writes compact manifest; repo itself is source of truth. Evidence at [/sources/git-repo.md](/sources/git-repo.md). Last updated 2026-09-11 18:14 UTC — **vault HEAD bumped** from `391e4713` → **`09bec36702cdbd8ef1d2644919ca337248ae6bff`** with **2 new vault commits** in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window, **vault silence streak BROKEN after 11 calendar days**: `1fd63019` 2026-09-10 (Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid, Western University, **0 vendor callouts**) + `09bec367` 2026-09-11 (Vijakumaran 2026 brain-organoid air-liquid interface oxygen engineering, **first v4 Flywheel auto-sink pipeline entry**); the 4 carry-forward untracked directories bumped carry-forward at the 2026-09-11T18:14Z fetch to **30/25/25/18-day** (the highest carry-forward durations of the 2026-08-07 streak); **4 new automated wiki commits** since the 2026-09-09T18:11Z fetch (`299eeab` sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync + `1e6a7cb` chore: daily update 2026-09-10 + `2bf104e` chore: daily update 2026-09-11 + `55d930f` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the count-data wipe pattern); wiki HEAD bumped `7e2072cef52a842ccde9daab27ad82699c9e127c` → `55d930ffbc0a658aa335683f0d412496b32af549` over the 2026-09-10T18:19Z → 2026-09-11T18:14Z window; the `55d930f` sources-sync on 2026-09-11 re-touched `sources/{nocodb,ragflow,seafile,wikijs}.md` and the synthesis edits left **10 uncommitted wiki files** (`M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`) — **10-dirty-file baseline, same as the 2026-09-10T18:19Z fetch** + **1 new untracked `NO` file** (stray test artifact); the synthesis layer is **substantively updated** because vault produced 2 new external-evidence papers — the `class-organoid-3d-bioprinting` row on `/themes.md` gets a Last-seen bump 2026-08-25 → 2026-09-11 + Evidence count 37+ → 39+. The 2026-08-31 daily update `c9e2770` (single-connector raw-data refresh combining HN-1 + git-repo-1 + web-search-1 skipped) + 2026-08-31 sources-sync `9582dea` (the **seventeenth** consecutive sources-sync) bumped wiki HEAD to `9582dea` + bumped dirty count to 11; the 2026-08-31 git-repo-1 fetch (vault HEAD bumped `9d4767c7` → `391e4713`, 5 new vault commits, ending the 5-day vault silence) is the THIRD consecutive single-day 5-paper CelVivo LDR burst (Yan + Stewart + Nguyen + Aiello + Miao all at `obsidian-vault/04-Literature/Deep-Reads/CelVivo/` capital-V parallel subfolder — Robin's first parallel-naming deep-read subfolder convention). The 2026-09-01T18:07Z + 2026-09-02T18:16Z + 2026-09-03T18:09Z + 2026-09-04T18:12Z + 2026-09-05T18:18Z + 2026-09-06T18:19Z + 2026-09-07T18:08Z + 2026-09-08T18:07Z + 2026-09-09T18:11Z + 2026-09-10T18:19Z fetches observed vault HEAD unchanged at `391e4713` for the 1st + 2nd + 3rd + 4th + 5th + 6th + 7th + 8th + 9th + **10th** consecutive fetch since the 2026-08-31 cluster (**0 new vault commits**, **10 calendar days stale** at the 2026-09-10T18:19Z fetch); the 2026-09-11T18:14Z fetch observes the **vault-silence-streak-broken** event with 2 new vault commits — the synthesis layer is **substantively updated** for the first time since the 2026-08-31 cluster. |
|
||||
|
||||
## How new source pages get created
|
||||
|
||||
|
||||
+42
-32
@@ -1,9 +1,9 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)"
|
||||
description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `391e4713`, 2026-09-09, **vault HEAD unchanged** at the 2026-08-31T18:09Z fetch level for the 9th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster, **0 new vault commits** in the 2026-09-08T18:07Z → 2026-09-09T18:11Z 24-hour window, **9 calendar days of vault silence** since the 2026-08-31 cluster (Yan + Stewart + Nguyen + Aiello + Miao all `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 28 → **29-day carry-forward** (26 → **27 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 23 → **24-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + **2026-09-09** fetches), `deepread_40240593/` 16 → **17-day carry-forward** (mtime unchanged across **16 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `7e2072cef52a842ccde9daab27ad82699c9e127c`, 2026-09-09, **2 new automated wiki commits in the 2026-09-08T18:07Z → 2026-09-09T18:11Z 24-hour window: `7e2072c` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-09 — the **twenty-sixth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15) committed `sources/{nocodb,ragflow,seafile,wikijs}.md` re-touched by the sources-sync, then `f7450e9` chore: daily update 2026-09-09 (per `git show --stat f7450e9` the commit touched 16 files including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` + one more file); the very next synthesis edits from the HN-1 2026-09-09 (next pull after the 2026-09-08 18:00 UTC pull — the 2026-09-09T18:11Z fetch is the git-repo-1 slot in the daily update cycle) + web-search-1 2026-09-09 (skipped) + this git-repo-1 2026-09-09T18:11Z run re-touched files leaving the dirty count at **10 per the manifest `changedFiles` list** — `M .last-update.json` + `M open-questions.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` — **same shape as the 2026-09-08T18:07Z fetch (10-dirty-file baseline)** because the `7e2072c` sources-sync on 2026-09-09 re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) that the `f7450e9` daily update had cleared via commit, plus the CLI metadata cycle re-touched `open-questions.md` + `sources/index.md` (replacing `quickstart.md` + `index.md` from the 2026-09-08 metadata cycle) + `.last-update.json` + `sources/hackernews.md` + `sources/web-search.md` + `themes.md` (4 metadata-cycle files that carried over from the 2026-09-08 cycle); the 10-dirty-file list does not include `quickstart.md` + `index.md` (the `f7450e9` daily update on 2026-09-09 re-touched them and cleared them via commit) or `sources/git-repo.md` + `sources/README.md` + `sources/literature.md` + `themes/05-robin-research.md` + `themes/index.md` (the `f7450e9` daily update on 2026-09-09 re-touched them and cleared them via commit) or `commitments.md` + `sources/openwiki-version-drift.md` (not re-touched by either the daily update or the CLI metadata cycle at this fetch)**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
|
||||
tags: [sources, git-repo, vault, wiki, manifest, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, vault-silent-9d, twenty-sixth-sources-sync, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-seventeen-silent-fetches]
|
||||
timestamp: 2026-09-09T18:11:00Z
|
||||
description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff`, 2026-09-11, **vault HEAD bumped `391e4713` → `09bec367`** in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window, **vault silence streak BROKEN after 11 calendar days** — **2 new vault commits** since the 2026-08-31T18:09Z THIRD consecutive 5-paper CelVivo LDR cluster: `1fd63019` 2026-09-10 `feat(literature): Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read` adding `04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md` (Western University HGSC ovarian-cancer precision-medicine deep-read, **0 vendor callouts**, `?? 0` per vendor-mapping discipline, no 3Brain reference per SOP cleanup rule) + `09bec367` 2026-09-11 `literature: 精读 NocoDB Id=3029 Air-liquid interface-centered oxygen engineering in human br (飞轮 v4 自动 sink)` adding `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md` (brain-organoid ALI oxygen engineering — first paper routed through the v4 Flywheel auto-sink pipeline)); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 29 → **30-day carry-forward** (27 → **28 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 24 → **25-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + **2026-09-11** fetches), `deepread_40240593/` 17 → **18-day carry-forward** (mtime unchanged across **17 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `55d930ffbc0a658aa335683f0d412496b32af549`, 2026-09-11, **4 new automated wiki commits in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window: `299eeab` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `7e2072c` 2026-09-09 + `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15) committed `sources/{nocodb,ragflow,seafile,wikijs}.md`, then `1e6a7cb` chore: daily update 2026-09-10 (per `git show --stat 1e6a7cb` the commit touched 14 files including `.last-update.json` + `open-questions.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md`), then `2bf104e` chore: daily update 2026-09-11 (per `git show --stat 2bf104e` the commit touched 12 files including `.last-update.json` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + additional files), then `55d930f` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern); the very next synthesis edits from the HN-1 2026-09-11 + web-search-1 2026-09-11 (skipped) + this git-repo-1 2026-09-11T18:14Z run re-touched files leaving the dirty count at **10 per the manifest `changedFiles` list** — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` — **same shape as the 2026-09-10T18:19Z fetch (10-dirty-file baseline)** because the `55d930f` sources-sync on 2026-09-11 re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) that the prior daily updates had cleared via commit, plus the CLI metadata cycle re-touched `index.md` + `quickstart.md` (carrying over from the prior metadata cycle) + `.last-updateLine truncated
|
||||
tags: [sources, git-repo, vault, wiki, manifest, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, vault-silence-broken, vault-resumed-after-11d, twenty-seventh-sources-sync, twenty-eighth-sources-sync, twenty-ninth-git-repo-fetch, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, wiki-4-new-commits, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-eighteen-silent-fetches]
|
||||
timestamp: 2026-09-11T18:14:00Z
|
||||
---
|
||||
|
||||
# Git repo — evidence index
|
||||
@@ -14,27 +14,28 @@ This page is the **compact source-evidence index** for the local git-repo connec
|
||||
|
||||
- Connector config path: `~/.openwiki/connectors/git-repo/config.json`
|
||||
- Two configured local repos:
|
||||
- `obsidian-vault` at `/home/ldw/workspace` (branch: `main`, HEAD `391e4713`, 2026-08-31 — 35 commits since 2026-08-03 fetch)
|
||||
- `openwiki-wiki` at `/home/ldw/.openwiki/wiki` (branch: `main`, HEAD `7e2072c`, 2026-09-09)
|
||||
- `obsidian-vault` at `/home/ldw/workspace` (branch: `main`, HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff`, 2026-09-11 — **37 commits since 2026-08-03 fetch**, +2 since 2026-09-09T18:11Z fetch)
|
||||
- `openwiki-wiki` at `/home/ldw/.openwiki/wiki` (branch: `main`, HEAD `55d930ffbc0a658aa335683f0d412496b32af549`, 2026-09-11 — bumped from `7e2072c` via 4 automated commits)
|
||||
- Authentication: local path only — no remote, no credentials
|
||||
|
||||
## Latest manifest
|
||||
|
||||
- `~/.openwiki/connectors/git-repo/raw/2026-09-09T18-11-48-700Z/manifest.json` (generated 2026-09-09T18:11:48Z)
|
||||
- Vault HEAD: `391e47131679ce9edf0f525236e78ebb13e0d232` (unchanged since 2026-08-31T13:42 +0800)
|
||||
- Wiki HEAD: `7e2072cef52a842ccde9daab27ad82699c9e127c` (bumped from `556d937` at 2026-09-09)
|
||||
- **0 new vault commits** in the 24-hour window (vault silent for the 9th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster)
|
||||
- **2 new automated wiki commits** in the 24-hour window (`7e2072c` sources-sync 2026-09-09 — the **twenty-sixth** consecutive sources-sync + `f7450e9` daily update 2026-09-09)
|
||||
- **10 uncommitted wiki files** in working tree per the manifest `changedFiles` list (same shape as the 2026-09-08T18:07Z fetch — the `f7450e9` daily update cleared `quickstart.md` + `index.md` + `sources/{git-repo,README,literature}.md` + `themes/05-robin-research.md` + `themes/index.md` via commit, but the `7e2072c` sources-sync on 2026-09-09 re-touched the 4 source-sync files `sources/{nocodb,ragflow,seafile,wikijs}.md` that the daily update had cleared — leaving those 4 + the 4 CLI metadata-cycle files `.last-update.json` + `open-questions.md` + `sources/hackernews.md` + `sources/web-search.md` + `sources/index.md` + `themes.md` still dirty after the synthesis edits = **10-dirty-file baseline, same shape as 2026-09-08T18:07Z fetch** — `open-questions.md` + `sources/index.md` replaced `quickstart.md` + `index.md` from the 2026-09-08 metadata cycle, all other entries carry forward unchanged)
|
||||
- `~/.openwiki/connectors/git-repo/raw/2026-09-11T18-14-12-972Z/manifest.json` (generated 2026-09-11T18:14:13Z)
|
||||
- Vault HEAD: `09bec36702cdbd8ef1d2644919ca337248ae6bff` (bumped from `391e4713` at 2026-09-11T18:14Z)
|
||||
- Wiki HEAD: `55d930ffbc0a658aa335683f0d412496b32af549` (bumped from `7e2072c` at 2026-09-11)
|
||||
- **2 new vault commits** in the 24-hour window (vault HEAD bumped `391e4713` → `09bec367`, **vault silence streak BROKEN** after 11 calendar days)
|
||||
- **4 new automated wiki commits** in the 24-hour window (`299eeab` sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync + `1e6a7cb` daily update 2026-09-10 + `2bf104e` daily update 2026-09-11 + `55d930f` sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync)
|
||||
- **10 uncommitted wiki files** in working tree per the manifest `changedFiles` list (same shape as the 2026-09-10T18:19Z fetch — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`)
|
||||
- **`?? NO`** — new untracked wiki file (content `Has \n?: 0` — stray test artifact; no synthesis relevance)
|
||||
|
||||
## Carry-forward untracked directories
|
||||
|
||||
| Directory / file | Carry-forward | Fetches silent | Status |
|
||||
| --- | ---: | ---: | --- |
|
||||
| `Review/zhou2023_computer_vision_microfluidics.md` | **29-day** | 27 | stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch) |
|
||||
| `celvivo_commercial/` | **24-day** | 24 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
|
||||
| `templates/` | **24-day** | 24 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
|
||||
| `deepread_40240593/` | **17-day** | 16 | working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 16 consecutive silent fetches since creation) |
|
||||
| `Review/zhou2023_computer_vision_microfluidics.md` | **30-day** | 28 | stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch) |
|
||||
| `celvivo_commercial/` | **25-day** | 25 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
|
||||
| `templates/` | **25-day** | 25 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
|
||||
| `deepread_40240593/` | **18-day** | 17 | working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 17 consecutive silent fetches since creation) |
|
||||
|
||||
## Robin 8-07 added — untracked regional agent files (context only)
|
||||
|
||||
@@ -51,31 +52,40 @@ The 8 untracked regional agent files Robin added on 2026-08-07 (per the source-s
|
||||
|
||||
These files are documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md) (with privacy rules per [`/sources/agents.md`](/sources/agents.md)) — no fresh synthesis update needed at this fetch.
|
||||
|
||||
## Recent commits — vault (last 5)
|
||||
## Recent commits — vault (last 7)
|
||||
|
||||
The most recent vault commits remain the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR burst (no new commits in the 24-hour window):
|
||||
The 5 most recent vault commits are the new 2 (Tomas 2026 + Vijakumaran 2026) on top of the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR burst. **Vault HEAD bumped `391e4713` → `09bec367`** — vault silence streak BROKEN after 11 calendar days:
|
||||
|
||||
1. `391e4713` 2026-08-31 — deep-read: Yan 2024 Cell Reports TMEM106B SARS-CoV-2 ACE2-independent brain organoids (CelVivo)
|
||||
2. `4fca0123` 2026-08-31 — deep-read: Miao 2025 Cell vascularized lung/gut organoids (CelVivo ClinoReactor)
|
||||
3. `fad7e21e` 2026-08-31 — deep-read: Nguyen 2024 npj Viruses JEV G4 2022 Australia brain organoids (CelVivo)
|
||||
4. `030f31ed` 2026-08-31 — deep-read: Aiello 2025 EMBO reports reproducible brain organoids (CelVivo ClinoReactor)
|
||||
5. `eb24ab72` 2026-08-31 — deep-read: Stewart 2023 Front Microbiol BA.5/XBB neurotropic brain organoids (CelVivo)
|
||||
1. `09bec367` 2026-09-11 — `literature: 精读 NocoDB Id=3029 Air-liquid interface-centered oxygen engineering in human br (飞轮 v4 自动 sink)` (brain-organoid ALI oxygen engineering — first paper routed through the **v4 Flywheel auto-sink pipeline**; new file at `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md`)
|
||||
2. `1fd63019` 2026-09-10 — `feat(literature): Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read` (Western University; new file at `04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md`)
|
||||
3. `391e4713` 2026-08-31 — deep-read: Yan 2024 Cell Reports TMEM106B SARS-CoV-2 ACE2-independent brain organoids (CelVivo)
|
||||
4. `4fca0123` 2026-08-31 — deep-read: Miao 2025 Cell vascularized lung/gut organoids (CelVivo ClinoReactor)
|
||||
5. `fad7e21e` 2026-08-31 — deep-read: Nguyen 2024 npj Viruses JEV G4 2022 Australia brain organoids (CelVivo)
|
||||
6. `030f31ed` 2026-08-31 — deep-read: Aiello 2025 EMBO reports reproducible brain organoids (CelVivo ClinoReactor)
|
||||
7. `eb24ab72` 2026-08-31 — deep-read: Stewart 2023 Front Microbiol BA.5/XBB neurotropic brain organoids (CelVivo)
|
||||
|
||||
## Recent commits — wiki (last 5)
|
||||
|
||||
1. `f7450e9` 2026-09-09 — chore: daily update 2026-09-09 (16 files modified per `git show --stat f7450e9`)
|
||||
2. `7e2072c` 2026-09-09 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-09, **twenty-sixth** consecutive sources-sync)
|
||||
3. `57be545` 2026-09-08 — chore: daily update 2026-09-08 (10 files modified per `git show --stat 57be545`)
|
||||
4. `556d937` 2026-09-08 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-08, **twenty-fifth** consecutive sources-sync)
|
||||
5. `3e04ce7` 2026-09-07 — chore: daily update 2026-09-07 (16 files modified per `git show --stat 3e04ce7`)
|
||||
1. `55d930f` 2026-09-11 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11, **twenty-eighth** consecutive sources-sync)
|
||||
2. `2bf104e` 2026-09-11 — chore: daily update 2026-09-11 (12 files modified per `git show --stat 2bf104e`)
|
||||
3. `1e6a7cb` 2026-09-10 — chore: daily update 2026-09-10 (14 files modified per `git show --stat 1e6a7cb`)
|
||||
4. `299eeab` 2026-09-10 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10, **twenty-seventh** consecutive sources-sync)
|
||||
5. `7e2072c` 2026-09-09 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-09, **twenty-sixth** consecutive sources-sync)
|
||||
|
||||
## Synthesis-policy — this run
|
||||
|
||||
- Vault delta: empty (no new commits, no new mtime changes; the 8 Robin-8-07 regional agent files carry forward unchanged).
|
||||
- Wiki delta: automated maintenance only (CLI metadata cycle + sources-sync + daily update).
|
||||
- Synthesis-layer impact: **none**. The themes / commitments / open-questions / personal-logistics pages are independent of the wiki-side automated maintenance commits.
|
||||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-09T18:11Z)" paragraph on `/quickstart.md` for the full delta list.
|
||||
- **Vault delta: 2 new vault commits** (Tomas 2026 + Vijakumaran 2026) — vault silence streak BROKEN after 11 calendar days since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster. Both new papers route through the standard `04-Literature/Deep-Reads/<application-domain>/<DOI>.md` pattern. The **v4 Flywheel auto-sink pipeline** (visible in the `09bec367` commit message "飞轮 v4 自动 sink") is the first observation of Robin's LDR pipeline v4 in action — the v3 SOP was 9 steps (per the 2026-08-25 `9aa2af4c` vendor-mapping retrofit); the v4 auto-sink iterates the SOP with an automated commit/sink step.
|
||||
- **Wiki delta: automated maintenance only** (CLI metadata cycle + sources-sync + daily update + sources-sync). The 4 new wiki commits are routine: 2 daily updates + 2 sources-syncs (the standard cadence).
|
||||
- **Synthesis-layer impact**:
|
||||
- **Vault silence streak BROKEN** — flips the narrative from "11 calendar days of vault silence" to "vault resumed after 11-day pause" + "2 new vault commits since the 2026-08-31 cluster" + "v4 Flywheel auto-sink pipeline first observation"
|
||||
- **`/sources/literature.md`** gets a new `2026-09-11 (Vijakumaran 2026 brain-organoid ALI oxygen engineering — first v4 Flywheel auto-sink entry)` row; the Tomas 2026 entry was added in a prior run (2026-09-10 row already present)
|
||||
- **`/themes.md`** `class-organoid-3d-bioprinting` row gets Last-seen refresh `2026-08-25` → `2026-09-11` + Evidence count bump `37+` → `39+` (Tomas 2026 + Vijakumaran 2026 = 2 new entries)
|
||||
- **`/themes/05-robin-research.md`** vault-snapshot metadata refreshed + 04-Literature/Deep-Reads/ breakdown table updated with Vijakumaran 2026 row + the 4 carry-forward untracked directories bumped to 30/25/25/18-day carry-forward
|
||||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-11T18:14Z)" paragraph + the description frontmatter mentions the 2026-09-11T18:14Z git-repo-1 fetch + the vault silence streak broken + the 2 new vault commits + the 4 new wiki commits + the 30/25/25/18-day carry-forward bump
|
||||
- **`/sources/index.md`** + **`/sources/README.md`** get their git-repo.md description entries refreshed
|
||||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-11T18:14Z)" paragraph on `/quickstart.md` for the full delta list.
|
||||
|
||||
## Previous run
|
||||
|
||||
- 2026-09-08T18:07Z — vault HEAD unchanged at `391e4713`, 2 new wiki commits (`556d937` + `57be545` — the **twenty-fifth** consecutive sources-sync), 10-dirty-file baseline (up from 4), the 4 carry-forward untracked directories bumped to 28/23/23/16-day carry-forward. See [`/themes/05-robin-research.md`](/themes/05-robin-research.md) + `/quickstart.md` for the full synthesis of that run.
|
||||
- 2026-09-09T18:11Z — vault HEAD unchanged at `391e4713`, 2 new wiki commits (`f7450e9` + `7e2072c` — the **twenty-sixth** consecutive sources-sync), 10-dirty-file baseline, the 4 carry-forward untracked directories bumped to 29/24/24/17-day carry-forward. See [`/themes/05-robin-research.md`](/themes/05-robin-research.md) + `/quickstart.md` for the full synthesis of that run.
|
||||
- 2026-09-10T18:19Z — manifest written by a prior ingestion cycle but no corresponding wiki update (the wiki HEAD was still `299eeab` at the 2026-09-10T18:19Z manifest timestamp, between the `7e2072c` 2026-09-09 sources-sync and the `1e6a7cb` 2026-09-10 daily update). The 2026-09-10T18:19Z manifest observed the same vault HEAD `391e4713` (vault still silent at that timestamp).
|
||||
+17
-5
@@ -2,8 +2,8 @@
|
||||
type: "Reference"
|
||||
title: "Hacker News — evidence index"
|
||||
description: "Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items."
|
||||
tags: [hackernews, evidence-index, source, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, 2026-08-21, 2026-08-20, 2026-08-19, 2026-08-18, 2026-08-17, 2026-08-16, 2026-08-15, 2026-08-13, 2026-08-12, 2026-08-10, cloud-in-a-bottle-8th-cluster-entry, gpt-6-astra-highest-engagement-streak, gpt-6-astra-openrouter-5th-cluster-entry, qwen-38-27b-cerebras-15th-cluster-entry, collusion-wiki-agent-message-board-adjacent, k2-horizon-openweight-14th-cluster-entry, m4-pro-mac-mini-local-model-13th-cluster-entry, muse-spark-closed-weight-adjacent, nvidia-acquire-hugging-face-2nd-item, gemini-38-flash-closed-weight-adjacent, anthropic-formalizing-fermat-closed-weight-adjacent, portal-spotify-claude-code-adjacent, codex-cli-libreoffice-adjacent, sixth-nbhits-positive-but-items-zero-materialization-gap, ask-hn-skills-files-259pt-named-stack-adjacent, lg-smart-tvs-audio-logging-972pt-off-scope, keep-our-servers-running-814pt-off-scope, de-brainrot-vacations-407pt-off-scope, grapheneos-default-apps-381pt-off-scope, anubis-wasm-338pt-off-scope, switzerland-microsoft-replacement-306pt-off-scope, mistral-raises-3b-eur-sovereign-openweight-adjacent, alphagenome-atlas-deepmind-247pt-closed-weight-adjacent, libreoffice-no-ai-features-590pt-named-stack-adjacent, jellyfin-12-556pt-off-scope, navier-stokes-openai-271pt-closed-weight-adjacent, google-jail-independent-wikis-439pt-openwiki-adjacent, qwen38-27b-quantization-benchmark-95pt-borderline, i-have-adhd-coding-skill-107pt-named-stack-adjacent, fifth-fully-zero-algolia-lane, thirtieth-hn-pull, deepseek-v41-flash-openweight-cluster-adjacent, qwen-38-reasoning-prefills-20pt-borderline, claude-change-add-to-cart-725pt-closed-weight-adjacent, gpt-6-astra-looped-transformers-162pt-closed-weight-adjacent, desert-ant-labs-294pt-local-llm-adjacent, thirty-first-hn-pull, deepseek-v41-flash-801pt-16th-cluster-adjacent, ai-vendor-business-stack-cluster-10-items, openai-training-toggle-8th-business-stack-entry, openai-proof-stolen-9th-business-stack-entry, openai-unpublished-math-10th-business-stack-entry, cognition-swe-2-coding-agent-adjacent]
|
||||
timestamp: 2026-09-10T18:00:33Z
|
||||
tags: [hackernews, evidence-index, source, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, 2026-08-30, 2026-08-29, 2026-08-28, 2026-08-27, 2026-08-26, 2026-08-25, 2026-08-24, 2026-08-23, 2026-08-22, 2026-08-21, 2026-08-20, 2026-08-19, 2026-08-18, 2026-08-17, 2026-08-16, 2026-08-15, 2026-08-13, 2026-08-12, 2026-08-10, cloud-in-a-bottle-8th-cluster-entry, gpt-6-astra-highest-engagement-streak, gpt-6-astra-openrouter-5th-cluster-entry, qwen-38-27b-cerebras-15th-cluster-entry, collusion-wiki-agent-message-board-adjacent, k2-horizon-openweight-14th-cluster-entry, m4-pro-mac-mini-local-model-13th-cluster-entry, muse-spark-closed-weight-adjacent, nvidia-acquire-hugging-face-2nd-item, gemini-38-flash-closed-weight-adjacent, anthropic-formalizing-fermat-closed-weight-adjacent, portal-spotify-claude-code-adjacent, codex-cli-libreoffice-adjacent, sixth-nbhits-positive-but-items-zero-materialization-gap, ask-hn-skills-files-259pt-named-stack-adjacent, lg-smart-tvs-audio-logging-972pt-off-scope, keep-our-servers-running-814pt-off-scope, de-brainrot-vacations-407pt-off-scope, grapheneos-default-apps-381pt-off-scope, anubis-wasm-338pt-off-scope, switzerland-microsoft-replacement-306pt-off-scope, mistral-raises-3b-eur-sovereign-openweight-adjacent, alphagenome-atlas-deepmind-247pt-closed-weight-adjacent, libreoffice-no-ai-features-590pt-named-stack-adjacent, jellyfin-12-556pt-off-scope, navier-stokes-openai-271pt-closed-weight-adjacent, google-jail-independent-wikis-439pt-openwiki-adjacent, qwen38-27b-quantization-benchmark-95pt-borderline, i-have-adhd-coding-skill-107pt-named-stack-adjacent, fifth-fully-zero-algolia-lane, thirtieth-hn-pull, deepseek-v41-flash-openweight-cluster-adjacent, qwen-38-reasoning-prefills-20pt-borderline, claude-change-add-to-cart-725pt-closed-weight-adjacent, gpt-6-astra-looped-transformers-162pt-closed-weight-adjacent, desert-ant-labs-294pt-local-llm-adjacent, thirty-first-hn-pull, deepseek-v41-flash-801pt-16th-cluster-adjacent, ai-vendor-business-stack-cluster-10-items, openai-training-toggle-8th-business-stack-entry, openai-proof-stolen-9th-business-stack-entry, openai-unpublished-math-10th-business-stack-entry, cognition-swe-2-coding-agent-adjacent, thirty-second-hn-pull, sixth-fully-zero-algolia-lane, openai-agents-api-11th-business-stack-entry, astra-for-coding-named-stack-adjacent, claude-age-assurance-closed-weight-adjacent, rtk-token-savings-named-stack-adjacent, gpty-agent-orchestration-adjacent]
|
||||
timestamp: 2026-09-11T18:00:33Z
|
||||
---
|
||||
|
||||
# Hacker News — evidence index
|
||||
@@ -16,10 +16,22 @@ Compact evidence trail for the Hacker News connector (`hackernews-1`, Robin-cura
|
||||
- **Backend:** public HN feeds (`top`, `new`) + Algolia HN search queries
|
||||
- **Auth:** none — public feeds
|
||||
- **Window:** last 24 hours
|
||||
- **Latest fetch:** `2026-09-10T18:00:33Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-09-10 18:00, 2026-09-09 18:00, 2026-09-08 18:00, 2026-09-07 18:00, 2026-09-06 18:00, 2026-09-05 18:00, 2026-09-04 18:00, 2026-09-03 18:00, 2026-09-02 18:00, 2026-09-01 18:00, 2026-08-31 18:00, 2026-08-30 18:00, 2026-08-29 18:00, 2026-08-28 18:00, 2026-08-27 18:00, 2026-08-26 18:00, 2026-08-25 18:00, 2026-08-24 18:00, 2026-08-23 18:00, 2026-08-22 18:00, 2026-08-21 18:00, 2026-08-20 18:00, 2026-08-19 18:00, 2026-08-18 18:00, 2026-08-17 18:00, 2026-08-16 18:00, 2026-08-15 18:00, 2026-08-13 18:00, 2026-08-12 18:00, 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below)
|
||||
- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-09-10T18-00-02-420Z/hackernews-results.json` (current — **thirty-first pull since 2026-08-07; first `normal-noise-only Algolia lane on 3 of 6 + clean zero on 3 of 6` pull since the 2026-09-09 7th `nbHits-positive-but-items-zero` materialization-gap pull** — same shape as the 2026-09-01 + 2026-09-02 + 2026-09-05 normal-noise-only pulls (Algolia substring-noise hits materialized in `queryResults[i].response.hits` for `CelVivo` + `3Brain` + `Cellink` with the connector-level `items` field populated normally); `organoid` returned `nbHits=0 / hits=0` (clean zero — **first clean-zero `organoid` pull since 2026-09-04 fully-zero pull**), `CelVivo` returned `nbHits=1 / hits=1` (1 substring-noise `Kelivo` Flutter LLM client — off-scope, **zero CelVivo organoid-in-a-bottle matches**), `3Brain` returned `nbHits=7 / hits=7` (7 `brain`-substring collisions: fly brain map / brainfuck chess engine / programming brain / Mario 64 fly brain / rebase brainer / Show HN build a sim — all off-scope `brain` substring collisions, **zero 3Brain HD-MEA matches**), `Cellink` returned `nbHits=3 / hits=3` (3 substring-noise `Miro acquisition`/`simulation testing` — all off-scope `celli-`/`Miro` substring collisions, **zero BIO X bioprinter matches**); `openwiki` + `deepagents` returned clean zero on both `nbHits` and `hits` — **fifteenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal); the connector completed normally at `fetchedAt: 2026-09-10T18:00:33.648Z` (24-hour window); **29 unique top+best items** (top 23/30 + best 10/30 - 4 overlap: `49641215` streaming subscriptions / `49643982` Shopify native / `49638353` OpenAI proof stolen / `49642531` Sony game ownership — the 29-item dedup count is -6 from the 2026-09-09 pull's 35 unique, the **first 29-item dedup count of the 2026-08-07 streak**; the 4 overlap count of 4 is -1 from the 2026-09-09 pull's 5 overlap); the **highest-engagement item of the pull** is **`49630931` "iPhone Duo"** (1350 pts top+best + 2356 cmts — off-scope Apple hardware rumor); the **highest-engagement named-stack-adjacent item of the pull** is **`49639090` "DeepSeek v4.1 Flash"** (801 pts top+best + 447 cmts, by `Liwink` 2026-09-09, https://api-docs.deepseek.com/news/v4-1-flash — **DeepSeek V4.1 Flash budget-tier sub-release of the V4 family**; **0.56 cmts-to-upvote ratio** indicates substantive engineering discussion; **adjacent-not-promoted per scope** because DeepSeek is not on Robin's named stack + the V4.1 flash is a budget-tier sub-release rather than a new family launch; **16th entry candidate in the open-weight-LLM cluster** with **the highest single open-weight-LLM cluster entry engagement of the entire 2026-08-07 streak**); the **highest-engagement AI-vendor-business-stack cluster entry of the pull** is **`49643556` "Tell HN: OpenAI keeps re-enabling the 'allow training' setting"** (383 pts best + 146 cmts, by `jacquesm` 2026-09-09, https://news.ycombinator.com/item?id=49643556 — **8th entry in the AI-vendor-business-stack cluster**; OpenAI user-train-on-input privacy/policy signal); see 2026-09-10 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-09-09T18-00-02-219Z/hackernews-results.json` (prior — **thirtieth pull since 2026-08-07; 7th `nbHits-positive-but-items-zero` materialization-gap pull** — same shape as the 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-05 + 2026-09-06 + 2026-09-07 pulls (Algolia substring-noise hits materialized in `queryResults[i].response.hits` for `organoid` + `3Brain` + `Cellink` but the connector-level `items` field is absent from the payload); `organoid` returned `nbHits=5 / hits=5` (5 substring-noise `organi-`/`organiz-` collisions: **`49626949` Ask HN: Would you support an anti-AI organization financially?** 3 pts + **`49625219` OCOM: An open spec that models an organization as governed objects** 1 pt + **`49620451` Show HN: Making an app to organize all basic aspects of modern life** 4 pts + **`49617072` Show HN: Blackholes – A macOS workspace for coding agents** 1 pt + **`49616713` Show HN: Thread to Self – a private message thread with yourself** 2 pts — all off-scope `organiz-`/`organi-` substring collisions, **zero biological-organoid matches**); `3Brain` returned `nbHits=8 / hits=8` (8 `brain`-substring collisions: **`49628919` Solving the Jane Street ASIC reverse-engineering puzzle** 3 pts + **`49628707` Show HN: Locksmith: Store Maven Secrets in the macOS Keychain** 3 pts + **`49624625` We asked if vibecoding had fried people's brains** 6 pts + **`49623800` Show HN; AGI brain project. Who wants to join in and help me?** 4 pts + **`49620601` Apple Acquires Sonera, Brainwave Sensing Technology Startup** 4 pts + **`49616682` Poisoning AI Scrapers (2024)** 2 pts + **`49615444` 166,000 neurons govern the fruit fly's behavior** 3 pts + **`49614253` Doomfly** 2Line truncated
|
||||
- **Latest fetch:** `2026-09-11T18:00:33Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-09-10 18:00, 2026-09-09 18:00, 2026-09-08 18:00, 2026-09-07 18:00, 2026-09-06 18:00, 2026-09-05 18:00, 2026-09-04 18:00, 2026-09-03 18:00, 2026-09-02 18:00, 2026-09-01 18:00, 2026-08-31 18:00, 2026-08-30 18:00, 2026-08-29 18:00, 2026-08-28 18:00, 2026-08-27 18:00, 2026-08-26 18:00, 2026-08-25 18:00, 2026-08-24 18:00, 2026-08-23 18:00, 2026-08-22 18:00, 2026-08-21 18:00, 2026-08-20 18:00, 2026-08-19 18:00, 2026-08-18 18:00, 2026-08-17 18:00, 2026-08-16 18:00, 2026-08-15 18:00, 2026-08-13 18:00, 2026-08-12 18:00, 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below)
|
||||
- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-09-11T18-00-02-196Z/hackernews-results.json` (current — **thirty-second pull since 2026-08-07; 6th `fully-zero Algolia lane` pull** — same shape as the 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-09-04 + 2026-09-08 fully-zero pulls (all 6 Algolia queries returned `nbHits=null / hits=0` with no substring-noise false positives); `organoid` + `CelVivo` + `3Brain` + `Cellink` + `openwiki` + `deepagents` each returned clean `nbHits=null / hits=0` — **sixteenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal); the connector completed normally at `fetchedAt: 2026-09-11T18:00:33.613Z` (24-hour window); **25 unique top+best items** (top 21/30 + best 7/30 - 3 overlap: `49656225` Claude 18+ + `49649213` OpenAI Agents API + `49658299` Houthis key island — the 25-item dedup count is -4 from the 2026-09-10 pull's 29 unique, the **first 25-item dedup count of the 2026-08-07 streak**; the 3 overlap count is -1 from the 2026-09-10 pull's 4 overlap); the **highest-engagement item of the pull** is **`49657850` "Ask HN: Can we please limit the AI news flood?"** (679 pts best + 334 cmts — meta HN discussion on AI-news volume; off-scope per scope); the **highest-engagement named-stack-adjacent AI agent item of the pull** is **`49649213` "OpenAI Agents API"** (333 pts top+best + 169 cmts, by `aquir` 2026-09-10, https://developers.openai.com/api/docs/guides/agents-api/overview — **OpenAI's new Agents API platform launch**; **0.51 cmts-to-upvote ratio** indicates substantive engineering discussion; **adjacent-not-promoted per scope** because OpenAI is closed-weight and not on Robin's named stack — Hermes / MiniMax-M3+H3 / OpenWiki / RAGFlow / NocoDB / SeaFile / Codex CLI are the named agents; **11th entry candidate in the AI-vendor-business-stack cluster**); the **highest-engagement named-stack-adjacent AI-coding item of the pull** is **`49654229` "Astra for Coding: Why Are We Doing This Again?"** (406 pts best + 311 cmts, by `manojbajaj95` 2026-09-11, https://lucumr.pocoo.org/2026/9/7/astra-why/ — Armin Ronacher's blog post on Astra for Coding / a critical reflection on the proliferation of AI coding tools; **adjacent-not-promoted per scope** because Astra is not on Robin's named coding-agent stack — Codex CLI is the named coding-agent); the **highest-engagement closed-weight-adjacent item of the pull** is **`49656225` "Claude is only available to people over 18 years"** (371 pts top+best + 447 cmts, by `Muhammad523` 2026-09-11, https://support.claude.com/en/articles/15171100-age-assurance-on-claude — **Anthropic's age-assurance policy announcement** for Claude; **adjacent-not-promoted per scope** because Anthropic is not on Robin's named stack); see 2026-09-11 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-09-10T18-00-02-420Z/hackernews-results.json` (prior — **thirty-first pull since 2026-08-07; first `normal-noise-only Algolia lane on 3 of 6 + clean zero on 3 of 6` pull since the 2026-09-09 7th `nbHits-positive-but-items-zero` materialization-gap pull** — same shape as the 2026-09-01 + 2026-09-02 + 2026-09-05 normal-noise-only pulls (Algolia substring-noise hits materialized in `queryResults[i].response.hits` for `CelVivo` + `3Brain` + `Cellink` with the connector-level `items` field populated normally); `organoid` returned `nbHits=0 / hits=0` (clean zero — **first clean-zero `organoid` pull since 2026-09-04 fully-zero pull**), `CelVivo` returned `nbHits=1 / hits=1` (1 substring-noise `Kelivo` Flutter LLM client — off-scope, **zero CelVivo organoid-in-a-bottle matches**), `3Brain` returned `nbHits=7 / hits=7` (7 `brain`-substring collisions: fly brain map / brainfuck chess engine / programming brain / Mario 64 fly brain / rebase brainer / Show HN build a sim — all off-scope `brain` substring collisions, **zero 3Brain HD-MEA matches**), `Cellink` returned `nbHits=3 / hits=3` (3 substring-noise `Miro acquisition`/`simulation testing` — all off-scope `celli-`/`Miro` substring collisions, **zero BIO X bioprinter matches**); `openwiki` + `deepagents` returned clean zero on both `nbHits` and `hits` — **fifteenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal); the connector completed normally at `fetchedAt: 2026-09-10T18:00:33.648Z` (24-hour window); **29 unique top+best items** (top 23/30 + best 10/30 - 4 overlap: `49641215` streaming subscriptions / `49643982` Shopify native / `49638353` OpenAI proof stolen / `49642531` Sony game ownership — the 29-item dedup count is -6 from the 2026-09-09 pull's 35 unique, the **first 29-item dedup count of the 2026-08-07 streak**; the 4 overlap count of 4 is -1 from the 2026-09-09 pull's 5 overlap); the **highest-engagement item of the pull** is **`49630931` "iPhone Duo"** (1350 pts top+bestLine truncated
|
||||
|
||||
## Latest update — 2026-09-10 18:00 UTC
|
||||
## Latest update — 2026-09-11 18:00 UTC
|
||||
|
||||
- **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed had 30 IDs (**21 resolved** — -2 from the 2026-09-10 pull's 23, the **lowest top-feed resolution of the 2026-08-07 streak**), `best` feed had 30 IDs (**7 resolved** — -3 from the 2026-09-10 pull's 10, the **lowest best-feed resolution of the 2026-08-07 streak**); deduplication gave **25 unique items across both feeds** (3 overlap between top and best: `49656225` Claude 18+ + `49649213` OpenAI Agents API + `49658299` Houthis key island — the 25-item dedup count is -4 from the 2026-09-10 pull's 29 unique, the **first 25-item dedup count of the 2026-08-07 streak**; the 3 overlap count is -1 from the 2026-09-10 pull's 4 overlap). The 6-query lane returned the **6th `fully-zero Algolia lane` pull of the 2026-08-07 streak** — same shape as the 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-09-04 + 2026-09-08 fully-zero pulls (all 6 Algolia queries returned `nbHits=null / hits=0` with no substring-noise false positives); `organoid` + `CelVivo` + `3Brain` + `Cellink` + `openwiki` + `deepagents` each returned clean `nbHits=null / hits=0` — **sixteenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal. The connector completed normally at `fetchedAt: 2026-09-11T18:00:33.613Z` (24-hour window). This is the **32nd pull since 2026-08-07** (after 31 prior pulls — 5 fully-zero + 6 substring-noise-only + 7 nbHits-positive-but-items-zero + 12 other [normal-noise-only / items-aggregated] — the 2026-09-11 pull is the 6th fully-zero Algolia lane pull, joining the 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-09-04 + 2026-09-08 prior fully-zero pulls). Tavily (web-search) remains the productive lane for vendor news; the HN lane's stable role continues as "high-engagement inference-lane / agent-stack adjacents + occasional substring-noise false positives on the vendor queries" rather than vendor-direct signals.
|
||||
|
||||
- **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries — and zero substring-noise false positives on the biological sense of the queries.** `organoid` + `CelVivo` + `3Brain` + `Cellink` returned clean `nbHits=null / hits=0` (no substring-noise false positives on any of the four). A title/URL regex sweep across the **25 unique top+best items** turned up **zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items**. The "no material HN footprint for the 4 vendor lines" finding continues to hold — this is the **32nd pull since 2026-08-07**. The 25 unique top+best items include **zero matches** for any in-scope vendor / customer / application-domain keyword — no CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip / organoid / bioprinting hits; no Hermes / OpenClaw / MiniMax / RAGFlow / NocoDB / SeaFile / Codex-CLI direct release hits.
|
||||
|
||||
- **Workflow lane:** **zero positive `openwiki` brand hits; zero positive `deepagents` hits; zero self-hosted-agentic-substrate cluster entries; zero open-weight-LLM cluster entries that promote the cluster; zero closed-weight-M3 cluster entries; one AI-vendor-business-stack cluster entry candidate `49649213` "OpenAI Agents API" (333 pts top+best + 169 cmts, by `aquir` 2026-09-10, https://developers.openai.com/api/docs/guides/agents-api/overview — **OpenAI's new Agents API platform launch**; **0.51 cmts-to-upvote ratio** indicates substantive engineering discussion; **adjacent-not-promoted per scope** because OpenAI is closed-weight and not on Robin's named stack — Hermes / MiniMax-M3+H3 / OpenWiki / RAGFlow / NocoDB / SeaFile / Codex CLI are the named agents; the **333-pt top+best engagement** would be the **11th cluster entry in the AI-vendor-business-stack cluster**, joining the 2026-09-05 `49568506` Anthropic FLT formalization (706 pts top+best + 447 cmts, 7th entry) + 2026-09-10 `49643556` OpenAI training-toggle (383 pts best + 146 cmts, 8th entry) + 2026-09-10 `49638353` OpenAI proof stolen (283 pts best + 10 cmts, 9th entry) + 2026-09-10 `49639408` OpenAI unpublished math (210 pts top + 357 cmts, 10th entry); the cluster would grow from 10 items / ~4,104+ pts to **11 items / ~4,437+ pts across 9 pulls over 12 days** if promoted, but **adjacent-not-promoted per scope** because OpenAI is closed-weight and not on Robin's named stack + the entry is the launch of a new AI agent platform rather than a vendor privacy / IP / business-stack signal that the existing cluster entries describe); zero named-stack-adjacent coding-agent launch (the 2026-09-10 `49645443` Cognition SWE-2 124 pts remains the latest coding-agent adjacent).** `openwiki` returned clean `nbHits=null / hits=0` — so the `openwiki-brand` watchlist row on `/themes.md` stays at Last seen 2026-07-16. `deepagents` returned clean `nbHits=null / hits=0` — the **sixteenth fully-zero `deepagents` lane in a row** after the 2026-08-27 first-positive LangChain deepagents `49461911` 1 pt single-event thematic signal. The 25 unique top+best items include **the highest-engagement item of the pull** — **`49657850` "Ask HN: Can we please limit the AI news flood?"** (679 pts best + 334 cmts, by `cromka` 2026-09-11, https://news.ycombinator.com/item?id=49657850 — meta HN discussion on the volume of AI news in HN feed; **0.49 cmts-to-upvote ratio** indicates substantive community feedback on HN's editorial balance; **off-scope per scope** because the item is a meta HN discussion rather than a vendor release / framework / schema / named-stack signal; the **679-pt engagement is the highest single best-feed item of the 2026-09-11 pull** and the **6th-highest single-item of the entire 2026-08-07 streak** after the 2026-09-04 GPT-6 Astra `49554643` 2080 pts + the 2026-08-27 Nvidia-Hugging Face acquisition `49458161` 1719 pts + the 2026-09-10 iPhone Duo `49630931` 1350 pts + the 2026-09-04 Discovery of a new OpenAI agent message board `49563355` 984 pts + the 2026-09-07 LG smart TVs `49594878` 972 pts). The 25 unique top+best items include **the highest-engagement named-stack-adjacent AI-coding item of the pull** — **`49654229` "Astra for Coding: Why Are We Doing This Again?"** (406 pts best + 311 cmts, by `manojbajaj95` 2026-09-11, https://lucumr.pocoo.org/2026/9/7/astra-why/ — Armin Ronacher's blog post on Astra for Coding / a critical reflection on the proliferation of AI coding tools; **0.77 cmts-to-upvote ratio** indicates substantive engineering discussion; **adjacent-not-promoted per scope** because Astra is not on Robin's named coding-agent stack — Codex CLI is the named coding-agent — but the **direct cross-walk to the Codex CLI / coding-agent-tooling cluster** is structurally adjacent because the item is a high-engagement reflection on the AI-coding-tool category that Codex CLI belongs to; **4th-highest coding-agent-tooling adjacent item of the 2026-08-07 streak** after the 2026-09-09 Claude change Add-to-Cart button `49623754` 725 pts + the 2026-09-02 ChatGPT/Codex LibreOffice `49527396` 473 pts + the 2026-09-10 Cognition SWE-2 `49645443` 124 pts + the 2026-08-30 Claude Session URL `49494049` 116 pts + the 2026-09-05 Portal by Spotify Claude Code `49571465` 218 pts). The 25 unique top+best items include **the highest-engagement closed-weight-adjacent item of the pull** — **`49656225` "Claude is only available to people over 18 years"** (371 pts top+best + 447 cmts, by `Muhammad523` 2026-09-11, https://support.claude.com/en/articles/15171100-age-assurance-on-claude — **Anthropic's age-assurance policy announcement** for Claude; **1.20 cmts-to-upvote ratio** indicates substantive community debate on AI age-verification; **adjacent-not-promoted per scope** because Anthropic is not on Robin's named stack + the entry is a policy change rather than a model release; cross-walks to the closed-weight-M3-comparison-anchor cluster via the AntLine truncated
|
||||
|
||||
- **Synthesis result:** **`/themes.md` updates** — the `MiniMax-m3` row description refreshes with the 2026-09-11 `49649213` "OpenAI Agents API" 11th AI-vendor-business-stack cluster entry candidate (adjacent-not-promoted per scope because OpenAI is closed-weight and not on Robin's named stack + the entry is a new AI agent platform launch rather than a vendor privacy / IP / business-stack signal); the cluster would grow from 10 items / ~4,104+ pts to 11 items / ~4,437+ pts across 9 pulls over 12 days if promoted, but the precedent from the 2026-09-10 3 OpenAI entries (`49643556` + `49638353` + `49639408`) is "adjacent-not-promoted per scope because OpenAI is closed-weight and not on Robin's named stack" + the same precedent applies to the 2026-09-11 entry; the AI-vendor-business-stack cluster total stays at **~4,104+ pts across 10 items in 8 pulls over 11 days**; the AI labs + math proof sub-cluster stays at ~1,582 pts over 5 days; **Last seen stays at 2026-08-03** because the 2026-09-11 pull does not surface any MiniMax-M3 or MiniMax-H3 release; Confidence stays at `source-backed`; Evidence count stays at 13. **No other theme-row updates** — `hermes-agent-v0-19-quicksilver` row stays unchanged (no new Hermes Agent release), `agent-memory-architecture` row stays unchanged (no new OKF/MCP Memory/Almanac artifact — the 1-pt Zep AI hiring `49661645` job posting is well below the 46-pt MCP Memory refresh trigger), `class-organoid-3d-bioprinting` row stays unchanged (no organoid/bioprinting signal on this pull), `openwiki-brand` row stays unchanged (clean zero on `openwiki` query — `openwiki-brand` watchlist row stays at Last seen 2026-07-16), `china-cde-cell-gene-therapy-rules-2026` row stays unchanged (no China regulatory items on this pull), `china-order-no-818-clinical-translation` row stays unchanged.
|
||||
|
||||
- **Key call:** The 2026-09-11 pull surfaces one notable workflow-lane signal — **`49649213` OpenAI Agents API** (333 pts top+best + 169 cmts) — the launch of a new AI agent platform API from OpenAI. The cluster engagement is well above the 100-pt typical entry bar but **adjacent-not-promoted per scope** because OpenAI is not on Robin's named stack + the entry is structurally adjacent to the AI-vendor-business-stack cluster via the 4 OpenAI entries from the 2026-09-10 pull (training-toggle + proof stolen + unpublished math) + the 2026-09-05 Anthropic FLT formalization entry, but the entry is a new AI agent platform launch rather than a vendor privacy / IP / business-stack signal that the existing cluster entries describe. Two other workflow-lane items worth flagging for traceability: (1) **`49654229` Astra for Coding: Why Are We Doing This Again?** (406 pts best + 311 cmts) — Armin Ronacher's high-engagement reflection on the proliferation of AI coding tools, adjacent-not-promoted per scope because Astra is not on Robin's named coding-agent stack (Codex CLI is the named coding-agent) but the entry is the 4th-highest coding-agent-tooling adjacent item of the 2026-08-07 streak and the highest-engagement AI-coding reflection since the 2026-08-22 Anthropic Claude Code A/B test 29 pts; (2) **`49656471` RTK reports token savings, but our cost benchmarks disagree** (112 pts top + 57 cmts) — Quesma's critical reflection on RTK's AI-coding token-savings claims, named-stack-adjacent because Codex CLI is on Robin's named coding-agent stack and the token-economics story is structurally relevant to the Codex CLI / Hermes / M3 inference-cost patterns. The 2026-09-11 pull did not surface any MiniMax-M3 or MiniMax-H3 release — the `MiniMax-m3` row's Last seen stays at 2026-08-03. The 2026-09-11 pull is the **6th fully-zero Algolia lane pull of the 2026-08-07 streak** (after 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-09-04 + 2026-09-08 — same shape as those five prior pulls, distinct from the 7 nbHits-positive-but-items-zero materialization-gap pulls on 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-09 + the 5 substring-noise-only pulls on 2026-08-10 + 2026-08-12 + 2026-08-22 + 2026-08-27 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-05 + 2026-09-10 + the 1 fully-noise pull on 2026-08-23), confirming the empty-pulls-on-vendor-queries cadence is normal under the 6-query LLM-agent topic set — not an outage, no config-side intervention needed. The Tavily (web-search) lane remains the productive lane for vendor news.
|
||||
|
||||
## Update — 2026-09-10 18:00 UTC
|
||||
|
||||
- **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed had 30 IDs (**23 resolved** — same top-feed resolution as the 2026-09-09 pull's 26, the **lowest top-feed resolution of the 2026-08-07 streak since the 2026-09-07 pull's 24**), `best` feed had 30 IDs (**10 resolved** — -4 from the 2026-09-09 pull's 14 best-feed resolution, the **lowest best-feed resolution of the 2026-08-07 streak**); deduplication gave **29 unique items across both feeds** (4 overlap between top and best: `49641215` Streaming subscriptions $702/year + `49643982` Shopify moves back to Native + `49638353` OpenAI might have stolen another major proof + `49642531` Sony digital game ownership — the 29-item dedup count is -6 from the 2026-09-09 pull's 35 unique, the **first 29-item dedup count of the 2026-08-07 streak**). The 6-query lane returned the **first `normal-noise-only Algolia lane on 3 of 6 + clean zero on 3 of 6` pull since the 2026-09-09 7th `nbHits-positive-but-items-zero` materialization-gap pull** — same shape as the 2026-09-01 + 2026-09-02 + 2026-09-05 noise-only pulls (Algolia substring-noise hits materialized in `queryResults[i].response.hits` for `CelVivo` + `3Brain` + `Cellink` with the connector-level `items` field populated normally, **distinct** from the 7 nbHits-positive-but-items-zero materialization-gap pulls on 2026-08-31 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-09 + the 2 prior 2026-09-01 + 2026-09-02 + the 5 fully-zero pulls on 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-09-04 + 2026-09-08, and from the 4 normal-noise-only pulls on 2026-08-10 + 2026-08-12 + 2026-08-22 + 2026-08-27 + 2026-09-03). `organoid` returned clean zero on both `nbHits` and `hits` — **first clean-zero `organoid` pull since the 2026-09-04 fully-zero pull**; `CelVivo` returned `nbHits=1 / hits=1` (1 substring-noise `Kelivo` Flutter LLM client — off-scope, **zero CelVivo organoid-in-a-bottle matches**); `3Brain` returned `nbHits=7 / hits=7` (7 `brain`-substring collisions: fly brain map / brainfuck chess engine / programming brain / Mario 64 fly brain / rebase brainer / Show HN build a sim — all off-scope `brain` substring collisions, **zero 3Brain HD-MEA matches**); `Cellink` returned `nbHits=3 / hits=3` (3 substring-noise `Miro acquisition`/`simulation testing` — all off-scope `celli-`/`Miro` substring collisions, **zero BIO X bioprinter matches**); `openwiki` + `deepagents` returned clean zero on both `nbHits` and `hits`. The connector completed normally at `fetchedAt: 2026-09-10T18:00:33.648Z` (24-hour window). This is the **thirty-first pull since 2026-08-07** (after 30 prior pulls — 5 fully-zero + 6 substring-noise-only + 7 nbHits-positive-but-items-zero + 12 other [normal-noise-only / items-aggregated] — the 2026-09-10 pull is counted within the 5 substring-noise-only pulls, joining the 2026-08-10 + 2026-08-12 + 2026-08-22 + 2026-08-27 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-05 prior substring-noise-only pulls). Tavily (web-search) remains the productive lane for vendor news; the HN lane's stable role continues as "high-engagement inference-lane / agent-stack adjacents + occasional substring-noise false positives on the vendor queries" rather than vendor-direct signals.
|
||||
|
||||
|
||||
+3
-2
@@ -4,7 +4,8 @@
|
||||
- [Agents 代理商档案索引 — 跨 agent CRM 同步](agents.md) - Cross-agent index of the Obsidian vault 02-Clients/Agents/* profiles (which agents Robin is actively working with, mapped by vendor product line). Base identity only — sensitive fields (phone / WeChat / email / end-customer list / opportunity value) live only in the private vault. Updated 2026-08-07 with _known_associations.md product-line → agent → end-customer mapping.
|
||||
- [全国经销商地图 (2026-08-07 时点)](distributors-china-2026.md) - Compact index of Robin's 2026-08-07 China distributor baseline (259 dealers across 7 regions, replacing 261 in the 2026-07-24 baseline) plus the new product-association index _known_associations.md. Surfaces CelVivo ClinoStar → 济南成全 + FemtoBiomed CellShot → 9X Bio → TriArm Therapeutics chain. Routes pricing-sensitive fields to the private Obsidian vault per /sources/agents.md privacy rule.
|
||||
- [飞书邮箱 (Robin customer mailbox)](feishu-mail.md) - Planned cross-agent mailbox sync target for Robin's Feishu (飞书) mailbox (imap.feishu.cn:993 / imap.larksuite.com:993) — would let MiniMax code / Hermes recall 'what did Robin last discuss with customer X' from email metadata + summaries. Not yet provisioned — IMAP credentials + update script + crontab still pending Robin setup; this page documents the planned configuration and the sync policy that will be applied once provisioned.
|
||||
- [Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `391e4713`, 2026-09-09, **vault HEAD unchanged** at the 2026-08-31T18:09Z fetch level for the 9th consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster, **0 new vault commits** in the 2026-09-08T18:07Z → 2026-09-09T18:11Z 24-hour window, **9 calendar days of vault silence** since the 2026-08-31 cluster (Yan + Stewart + Nguyen + Aiello + Miao all `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 28 → **29-day carry-forward** (26 → **27 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 23 → **24-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + **2026-09-09** fetches), `deepread_40240593/` 16 → **17-day carry-forward** (mtime unchanged across **16 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `7e2072cef52a842ccde9daab27ad82699c9e127c`, 2026-09-09, **2 new automated wiki commits in the 2026-09-08T18:07Z → 2026-09-09T18:11Z 24-hour window: `7e2072c` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-09 — the **twenty-sixth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15) committed `sources/{nocodb,ragflow,seafile,wikijs}.md` re-touched by the sources-sync, then `f7450e9` chore: daily update 2026-09-09 (per `git show --stat f7450e9` the commit touched 16 files including `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` + one more file); the very next synthesis edits from the HN-1 2026-09-09 (next pull after the 2026-09-08 18:00 UTC pull — the 2026-09-09T18:11Z fetch is the git-repo-1 slot in the daily update cycle) + web-search-1 2026-09-09 (skipped) + this git-repo-1 2026-09-09T18:11Z run re-touched files leaving the dirty count at **10 per the manifest `changedFiles` list** — `M .last-update.json` + `M open-questions.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` — **same shape as the 2026-09-08T18:07Z fetch (10-dirty-file baseline)** because the `7e2072c` sources-sync on 2026-09-09 re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) that the `f7450e9` daily update had cleared via commit, plus the CLI metadata cycle re-touched `open-questions.md` + `sources/index.md` (replacing `quickstart.md` + `index.md` from the 2026-09-08 metadata cycle) + `.last-update.json` + `sources/hackernews.md` + `sources/web-search.md` + `themes.md` (4 metadata-cycle files that carried over from the 2026-09-08 cycle); the 10-dirty-file list does not include `quickstart.md` + `index.md` (the `f7450e9` daily update on 2026-09-09 re-touched them and cleared them via commit) or `sources/git-repo.md` + `sources/README.md` + `sources/literature.md` + `themes/05-robin-research.md` + `themes/index.md` (the `f7450e9` daily update on 2026-09-09 re-touched them and cleared them via commit) or `commitments.md` + `sources/openwiki-version-drift.md` (not re-touched by either the daily update or the CLI metadata cycle at this fetch)**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
|
||||
- [Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)](git-repo.md) - Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff`, 2026-09-11, **vault HEAD bumped `391e4713` → `09bec367`** in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window, **vault silence streak BROKEN after 11 calendar days** — **2 new vault commits** since the 2026-08-31T18:09Z THIRD consecutive 5-paper CelVivo LDR cluster: `1fd63019` 2026-09-10 `feat(literature): Tomas 2026 HGSC carboplatin/PARPi spheroid+organoid deep-read` adding `04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md` (Western University HGSC ovarian-cancer precision-medicine deep-read, **0 vendor callouts**, `?? 0` per vendor-mapping discipline, no 3Brain reference per SOP cleanup rule) + `09bec367` 2026-09-11 `literature: 精读 NocoDB Id=3029 Air-liquid interface-centered oxygen engineering in human br (飞轮 v4 自动 sink)` adding `Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md` (brain-organoid ALI oxygen engineering — first paper routed through the v4 Flywheel auto-sink pipeline)); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 29 → **30-day carry-forward** (27 → **28 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 24 → **25-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10 + **2026-09-11** fetches), `deepread_40240593/` 17 → **18-day carry-forward** (mtime unchanged across **17 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `55d930ffbc0a658aa335683f0d412496b32af549`, 2026-09-11, **4 new automated wiki commits in the 2026-09-10T18:19Z → 2026-09-11T18:14Z 24-hour window: `299eeab` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-10 — the **twenty-seventh** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `7e2072c` 2026-09-09 + `556d937` 2026-09-08 + `56aeb69` 2026-09-07 + `0f8555e` 2026-09-06 + `0be3b8a` 2026-09-05 + `88635ed` 2026-09-04 + `58168e7` 2026-09-03 + `cedbb7f` 2026-09-02 + `0890fdb` 2026-09-01 + `9582dea` 2026-08-31 + `d56da3a` 2026-08-30 + `37d1ba6` 2026-08-29 + `c992dd6` 2026-08-28 + `502281f` 2026-08-27 + `ebb95c0` 2026-08-26 + `1003b92` 2026-08-25 + `127c2dc` 2026-08-24 + `8f8f767` 2026-08-23 + `43d4548` 2026-08-22 + `f6c2576` 2026-08-21 + `bd30339` 2026-08-20 + `dcb53a2` 2026-08-19 + `1fc73ae` 2026-08-18 + `be49285` 2026-08-17 + `997b648` 2026-08-16 + `2507925` 2026-08-15) committed `sources/{nocodb,ragflow,seafile,wikijs}.md`, then `1e6a7cb` chore: daily update 2026-09-10 (per `git show --stat 1e6a7cb` the commit touched 14 files including `.last-update.json` + `open-questions.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md`), then `2bf104e` chore: daily update 2026-09-11 (per `git show --stat 2bf104e` the commit touched 12 files including `.last-update.json` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + additional files), then `55d930f` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-11 — the **twenty-eighth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern); the very next synthesis edits from the HN-1 2026-09-11 + web-search-1 2026-09-11 (skipped) + this git-repo-1 2026-09-11T18:14Z run re-touched files leaving the dirty count at **10 per the manifest `changedFiles` list** — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` — **same shape as the 2026-09-10T18:19Z fetch (10-dirty-file baseline)** because the `55d930f` sources-sync on 2026-09-11 re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`) that the prior daily updates had cleared via commit, plus the CLI metadata cycle re-touched `index.md` + `quiLine truncated
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||||
?: 0` — appears to be a stray test artifact, no synthesis relevance)**.**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
|
||||
- [Hacker News — evidence index](hackernews.md) - Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items.
|
||||
- [文献精读 Master Template (Robin 7-27 实战版, "真适合浏览" 1 文件)](ldr-report-template.md) - Master template for Robin's literature-deep-read (LDR) pipeline — consolidates 4 literature skills (`literature-deep-read` / `research` / `review` / `curation-for-sales`) into a single 8-rule + 3-trigger + 5-section "真适合浏览" report format. Synthesized from 4-27 SOP范本 + 7-27 实战 lessons (Tasevska / Raji / Bosnjakovic). Triggers "精读吧" / "发 wikijs" / "入库" / "A" / Id/DOI/PMID/PDF signals into 4-step精简 or 8-step完整 flows. PDF全文必传 + PyMuPDF xref去重 + 9项强制 + SeaFile hostname `fb.biokingdom.top` + NocoDB v1 JSON + 3张真图 + `journal-year-topic` 报告路径.
|
||||
- [Bosnjakovic 2025 PAH 3D 球体代谢组学: 跟 CelVivo ClinoStar dynamic culture 关系 (Bosnjakovic 2025 bioRxiv)](literature-cel-bosnjakovic-2025-pah-deepread.md) - Deep-read synthesis of Bosnjakovic A et al. 2025 bioRxiv preprint (DOI 10.1101/2025.07.10.663939v1, 2025-07-10) — 21-day mature HepG2 3D spheroids with graded non-cytotoxic BaP + BBF (PAH代表物) exposure for metabolomics biomarker discovery. Robin's connection: 3D spheroid protocol maps directly onto CelVivo ClinoStar dynamic culture; supports PAH exposure metabolomics positioning for hepatotoxicity / NAFLD modeling applications. 精读 2026-07-27.
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@@ -14,7 +15,7 @@
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- [Raji 2026 (hMOs + 3Brain HD-MEA) — 7-27 增补版 (跟 7-01 矩阵集成)](literature-raji-2026-deepread.md) - Deep-read synthesis of Raji H, Bertoli F, Perez MJ, Lam A, Volpicelli-Daley LA, Deleidi M. 2026 Molecular Psychiatry (Nature 子刊, s41380-026-03667-4, DOI 10.1038/s41380-026-03667-4, IF 11) — human midbrain organoids (hMOs) with WNT modulation, dopaminergic neuron differentiation, bioreactor culture, and 3Brain HD-MEA electrophysiology for Parkinson's disease modeling. 7-01 实战范本 (page 1622) + 7-27 增补版 integrated with 3-paper 3Brain MEA matrix (Raji / Pali / Wei) and 4 product-line complementarity chain (CelVivo ClinoStar + Cellink BIO X + 3Brain HD-MEA + FemtoBiomed CellShot).
|
||||
- [Sharma 2026 — vascularized retinal organoid RGC survival and maturation (Cell Stem Cell)](literature-sharma-2026-cell-stem-cell-vascularized-retinal-organoid-rgc-deepread.md) - Deep-read synthesis of Sharma K et al. (2026) Cell Stem Cell — transiently vascularized human retinal organoids with RGC 18.2% vs ctrl-RO 1.21% at week 18, W31 ON/OFF/ON-OFF light responses, C3 endothelial monolayer integration strategy.
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||||
- [3D 打印缓释 HCTZ 片: 跟 Cellink BIO X 挤出打印 (Tasevska 2025 EJPS)](literature-tasevska-2025-deepread.md) - Deep-read synthesis of Tasevska T et al. 2025 European Journal of Pharmaceutical Sciences 206:106998 (DOI 10.1016/j.ejps.2024.106998, 精读 2026-07-27) — first systematic SSE semi-solid extrusion vs DLP digital-light-processing comparison for sustained-release HCTZ (hydrochlorothiazide) tablets, with focus on SSE matching Cellink BIO X extrusion principle. Supports Robin's 3D-printed personalized-dose / sustained-release positioning and SSE extruder cross-sell narrative for Cellink BIO X accounts.
|
||||
- [Literature Deep-Reads — cross-agent deep-read index](literature.md) - Cross-agent index of Robin's literature deep-reads across the 4 vendor product lines (CelVivo / 3Brain / Cellink / Femtobiomed) and adjacent application domains (organoid IRB / ethics, vascularized organoids, microfluidic / organ-on-chip). Backed by the Obsidian vault 04-Literature/Deep-Reads/ and the flywheel-sync pipeline; synthesis pages are linked per paper.
|
||||
- [Literature Deep-Reads — cross-agent deep-read index](literature.md) - Cross-agent index of Robin's literature deep-reads across the 4 vendor product lines (CelVivo / 3Brain / Cellink / Femtobiomed) and adjacent application domains (organoid IRB / ethics, vascularized organoids, microfluidic / organ-on-chip, brain-organoid ALI oxygen engineering, HGSC ovarian cancer precision medicine). Backed by the Obsidian vault 04-Literature/Deep-Reads/ and the flywheel-sync pipeline; synthesis pages are linked per paper. The 2026-09-11 fetch added 2 new entries after the **vault silence streak was broken** at 2026-09-10 (Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering, the latter being the **first v4 Flywheel auto-sink pipeline entry**); the prior 2026-08-31 CelVivo cluster remains the most-recent vault activity for 11 calendar days before the 2026-09-10 / 2026-09-11 resumption.
|
||||
- [NocoDB 文献库索引 — 跨 agent 数据层](nocodb.md)
|
||||
- [OpenWiki Upgrade Drift (auto-generated)](openwiki-version-drift.md)
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||||
- [OpenWiki 速查手册 (Robin 一次聊清, 直接拿来用)](OpenWiki%E9%80%9F%E6%9F%A5%E6%89%8B%E5%86%8C.md) - Compact OpenWiki cheat-sheet that condenses the 2026-07-27 6-conversation walkthrough into a single ready-to-share document. Designed for one-shot delivery to any agent / colleague / customer / manager who asks 'what is OpenWiki?' — covers the core concept, structure, sync model, and 4 active connectors in one page.
|
||||
|
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+11
-5
@@ -1,9 +1,9 @@
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---
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||||
type: "Reference"
|
||||
title: "Literature Deep-Reads — cross-agent deep-read index"
|
||||
description: "Cross-agent index of Robin's literature deep-reads across the 4 vendor product lines (CelVivo / 3Brain / Cellink / Femtobiomed) and adjacent application domains (organoid IRB / ethics, vascularized organoids, microfluidic / organ-on-chip). Backed by the Obsidian vault 04-Literature/Deep-Reads/ and the flywheel-sync pipeline; synthesis pages are linked per paper."
|
||||
tags: [literature, deep-read, flywheel, celvivo, 3brain, cellink, femtobiomed, tevonian-2026-vascularized-liver-mps, yang-2026-cardiac-organoid-review, shen-2026-vascularized-organoids-review, zhai-2026-3d-skin-pemphigus, yan-2024-tmem106b-sars-cov2-brain-organoid, stewart-2023-ba5-xbb-neurotropic-brain-organoid, nguyen-2024-jev-g4-australia-brain-organoid, aiello-2025-brain-organoid-reproducibility, miao-2025-vascularized-lung-gut-organoids, pasca-2025-nature-assembloid, microgravity-reproductive-review-2026, 2026-08-31, 2026-08-27, 2026-08-25, 2026-08-24, 2026-08-23, vascularized-organoids, cardiac-organoids, skin-organoids, brain-organoid-virology-cluster, third-5paper-burst, celvivo-capital-v-parallel-subfolder]
|
||||
timestamp: 2026-08-27T18:25:00Z
|
||||
description: "Cross-agent index of Robin's literature deep-reads across the 4 vendor product lines (CelVivo / 3Brain / Cellink / Femtobiomed) and adjacent application domains (organoid IRB / ethics, vascularized organoids, microfluidic / organ-on-chip, brain-organoid ALI oxygen engineering, HGSC ovarian cancer precision medicine). Backed by the Obsidian vault 04-Literature/Deep-Reads/ and the flywheel-sync pipeline; synthesis pages are linked per paper. The 2026-09-11 fetch added 2 new entries after the **vault silence streak was broken** at 2026-09-10 (Tomas 2026 HGSC + Vijakumaran 2026 brain-organoid ALI oxygen engineering, the latter being the **first v4 Flywheel auto-sink pipeline entry**); the prior 2026-08-31 CelVivo cluster remains the most-recent vault activity for 11 calendar days before the 2026-09-10 / 2026-09-11 resumption."
|
||||
tags: [literature, deep-read, flywheel, celvivo, 3brain, cellink, femtobiomed, tevonian-2026-vascularized-liver-mps, yang-2026-cardiac-organoid-review, shen-2026-vascularized-organoids-review, zhai-2026-3d-skin-pemphigus, yan-2024-tmem106b-sars-cov2-brain-organoid, stewart-2023-ba5-xbb-neurotropic-brain-organoid, nguyen-2024-jev-g4-australia-brain-organoid, aiello-2025-brain-organoid-reproducibility, miao-2025-vascularized-lung-gut-organoids, pasca-2025-nature-assembloid, microgravity-reproductive-review-2026, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, 2026-09-11, 2026-09-10, 2026-08-31, 2026-08-27, 2026-08-25, 2026-08-24, 2026-08-23, vascularized-organoids, cardiac-organoids, skin-organoids, brain-organoid-virology-cluster, third-5paper-burst, celvivo-capital-v-parallel-subfolder, flywheel-v4-auto-sink, vault-silence-broken, vault-resumed-after-11d, post-celvivo-burst-cluster-resumption]
|
||||
timestamp: 2026-09-11T18:14:00Z
|
||||
---
|
||||
|
||||
# Literature Deep-Reads — cross-agent deep-read index
|
||||
@@ -14,11 +14,17 @@ timestamp: 2026-08-27T18:25:00Z
|
||||
|
||||
## Last 30 days of deep reads (mtime descending)
|
||||
|
||||
### 2026-09-10 (HGSC ovarian-cancer PDO combination-therapy deep-read — non-vendor, PMC gold OA)
|
||||
### 2026-09-11 (Vijakumaran 2026 brain-organoid ALI oxygen engineering — first v4 Flywheel auto-sink pipeline entry)
|
||||
|
||||
| DOI / slug | Vendor | Application | Title (short) | Vault path |
|
||||
| --- | --- | --- | --- | --- |
|
||||
| `vijakumaran2026-brain-organoid-ali-oxygen-engineering` | **TBD — vendor callout pending** (path is `Literature/Deep-Reads/Organoid/`, suggesting Robin classified it under brain-organoid culture-technique domain; NocoDB Id=3029; vendor mapping pending Tavily verification) | Brain organoid air-liquid interface (ALI) oxygen engineering | Vijakumaran 2026 **Air-liquid interface-centered oxygen engineering in human brain organoids** (NocoDB Id=3029; Wiki ID TBD; **first paper routed through the v4 Flywheel auto-sink pipeline** per the `09bec367` commit message `飞轮 v4 自动 sink`) — air-liquid interface (ALI) culture technique applied to human brain organoids to control oxygen exposure for neural maturation; the ALI-centered oxygen engineering pattern is structurally adjacent to CelVivo ClinoReactor (long-term stable oxygen-controlled organoid culture) + 3Brain HD-MEA (downstream functional validation via electrophysiology) + Mimetas OrganoPlate (ALI culture is the canonical Mimetas OrganoPlate use case for airway / lung / intestinal epithelia, now applied to brain organoid) — vendor-mapping step pending | `obsidian-vault/Literature/Deep-Reads/Organoid/vijakumaran2026-brain-organoid-ali-oxygen-engineering.md` |
|
||||
|
||||
### 2026-09-10 (HGSC ovarian-cancer PDO combination-therapy deep-read — non-vendor, PMC gold OA — vault commit landed 2026-09-10)
|
||||
|
||||
| DOI | Vendor | Application | Title (short) | Vault path |
|
||||
| --- | --- | --- | --- | --- |
|
||||
| `10.1080/15384047.2025.2611602` | **none — 0 product mentions** (spheroid = ULA static plate; organoid = Cultrex BME; no bioreactor/spinner) | HGSC patient-ascites iOvCa lines (n=6) as spheroids + organoids; carboplatin ± olaparib/niraparib direct vs sequential | Tomas EJ, Davis J, Ramos Valdes Y, Shepherd TG (2026) **Evaluating carboplatin and PARP inhibitor combination efficacy using high-grade serous carcinoma spheroids and organoids** (Cancer Biol Ther 27(1):2611602; Western University; PMID 41520277; PMC12795296 gold OA; Wiki.js 1787) — direct combination did NOT exceed carboplatin alone (no additivity/synergy); only exception = BRCA1-mutant iOvCa195 organoids benefit when PARPi given FIRST; niraparib more potent than olaparib except iOvCa256 (27.16 vs 18.09 µM); RAD51 foci functional HRD validation. Key "honest negative" for clinical-trial sequencing of PARPi-before-chemo in HRD patients | `obsidian-vault/04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md` |
|
||||
| `10.1080/15384047.2025.2611602` | **none — 0 product mentions** (spheroid = ULA static plate; organoid = Cultrex BME; no bioreactor/spinner) | HGSC patient-ascites iOvCa lines (n=6) as spheroids + organoids; carboplatin ± olaparib/niraparib direct vs sequential | Tomas EJ, Davis J, Ramos Valdes Y, Shepherd TG (2026) **Evaluating carboplatin and PARP inhibitor combination efficacy using high-grade serous carcinoma spheroids and organoids** (Cancer Biol Ther 27(1):2611602; Western University; PMID 41520277; PMC12795296 gold OA; Wiki.js 1787; **vault commit `1fd63019` 2026-09-10 — first vault commit since the 2026-08-31 CelVivo cluster**) — direct combination did NOT exceed carboplatin alone (no additivity/synergy); only exception = BRCA1-mutant iOvCa195 organoids benefit when PARPi given FIRST; niraparib more potent than olaparib except iOvCa256 (27.16 vs 18.09 µM); RAD51 foci functional HRD validation. Key "honest negative" for clinical-trial sequencing of PARPi-before-chemo in HRD patients | `obsidian-vault/04-Literature/Deep-Reads/tomas-2026-hgsoc-carboplatin-parpi-spheroid-organoid.md` |
|
||||
|
||||
### 2026-08-31 (5-paper CelVivo-anchored single-shot LDR burst — NEW `CelVivo/` capital-V subfolder)
|
||||
|
||||
|
||||
@@ -1,3 +1,9 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "NocoDB 文献库索引 — 跨 agent 数据层"
|
||||
openwiki_generated: true
|
||||
---
|
||||
|
||||
# NocoDB 文献库索引 — 跨 agent 数据层
|
||||
|
||||
> 数据源: NocoDB 13 个文献库 + 2 个公司库 (实时,每次 OpenWiki cron 跑时更新)
|
||||
|
||||
@@ -1,3 +1,9 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "RAGFlow 全文检索索引 (Robin KB system)"
|
||||
openwiki_generated: true
|
||||
---
|
||||
|
||||
# RAGFlow 全文检索索引 (Robin KB system)
|
||||
|
||||
> 数据源: RAGFlow (http://10.10.10.254:9980/) 14 个 KB 全文检索结果
|
||||
|
||||
@@ -1,3 +1,9 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "SeaFile 大文件存储索引"
|
||||
openwiki_generated: true
|
||||
---
|
||||
|
||||
# SeaFile 大文件存储索引
|
||||
|
||||
> 数据源: SeaFile (http://10.10.10.254:9898/) 共 N 个资料库
|
||||
|
||||
+13
-5
@@ -2,13 +2,21 @@
|
||||
type: "Reference"
|
||||
title: "Web Search Evidence"
|
||||
description: "Compact ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news."
|
||||
tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-09-10, 2026-09-09, twenty-eighth-websearch-skip]
|
||||
timestamp: 2026-09-10T18:14:31Z
|
||||
tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-09-11, 2026-09-10, 2026-09-09, twenty-ninth-websearch-skip]
|
||||
timestamp: 2026-09-11T18:14:00Z
|
||||
---
|
||||
|
||||
# Web Search Evidence
|
||||
|
||||
> Connector: `web-search-1` (Tavily). Search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC.
|
||||
> Connector: `web-search-1` (Tavily). Search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC. Cumulative skip count: **29 consecutive** across 2026-08-08 → 2026-09-11.
|
||||
|
||||
## 2026-09-11 attempted update — skipped
|
||||
|
||||
- **Status:** skipped. The runtime reported that `web-search-1` was not enabled (`Set enabled=true in ~/.openwiki/connectors/web-search/config.json`).
|
||||
- **Authentication:** `TAVILY_API_KEY` was not present, so no Tavily request was made.
|
||||
- **Coverage:** no raw data files were written for the requested 24-hour window. The nightly searxng-fallback slot for the 24-hour window is also empty on disk (no fallback result) — no web-search evidence of any kind landed in the window. No new source-backed evidence about CelVivo, 3Brain, Cellink, or organoid news was available.
|
||||
- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md`.
|
||||
- **Operational note:** the connector's on-disk configuration and runtime registration remain inconsistent. Configure `TAVILY_API_KEY` in the OpenWiki runtime and refresh the connector registry before the next pull. This is the **twenty-ninth consecutive skip** on the same code path (after 2026-08-08 + 2026-08-10 + 2026-08-12 + 2026-08-15 + 2026-08-17 + 2026-08-18 + 2026-08-19 + 2026-08-20 + 2026-08-21 + 2026-08-22 + 2026-08-23 + 2026-08-24 + 2026-08-25 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09 + 2026-09-10); the latest successful Tavily pull remains 2026-08-03 18:08 UTC.
|
||||
|
||||
## 2026-09-10 attempted update — skipped
|
||||
|
||||
@@ -16,7 +24,7 @@ timestamp: 2026-09-10T18:14:31Z
|
||||
- **Authentication:** `TAVILY_API_KEY` was not present, so no Tavily request was made.
|
||||
- **Coverage:** no raw data files were written for the requested 24-hour window. The nightly searxng-fallback slot for the 24-hour window is also empty on disk (no fallback result) — no web-search evidence of any kind landed in the window. No new source-backed evidence about CelVivo, 3Brain, Cellink, or organoid news was available.
|
||||
- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md`.
|
||||
- **Operational note:** the connector's on-disk configuration and runtime registration remain inconsistent. Configure `TAVILY_API_KEY` in the OpenWiki runtime and refresh the connector registry before the next pull. This is the **twenty-eighth consecutive skip** on the same code path (after 2026-08-08 + 2026-08-10 + 2026-08-12 + 2026-08-15 + 2026-08-17 + 2026-08-18 + 2026-08-19 + 2026-08-20 + 2026-08-21 + 2026-08-22 + 2026-08-23 + 2026-08-24 + 2026-08-25 + 2026-08-27 + 2026-08-28 + 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + 2026-09-02 + 2026-09-03 + 2026-09-04 + 2026-09-05 + 2026-09-06 + 2026-09-07 + 2026-09-08 + 2026-09-09); the latest successful Tavily pull remains 2026-08-03 18:08 UTC.
|
||||
- **Operational note:** the connector's on-disk configuration and runtime registration remain inconsistent. Configure `TAVILY_API_KEY` in the OpenWiki runtime and refresh the connector registry before the next pull. The 2026-09-10 attempt was the **twenty-eighth consecutive skip** at the time of its attempt (twenty-ninth including the 2026-09-11 follow-up); the latest successful Tavily pull remains 2026-08-03 18:08 UTC.
|
||||
|
||||
## 2026-09-09 attempted update — skipped
|
||||
|
||||
@@ -24,7 +32,7 @@ timestamp: 2026-09-10T18:14:31Z
|
||||
- **Authentication:** `TAVILY_API_KEY` was not present, so no Tavily request was made.
|
||||
- **Coverage:** no raw data files were written for the requested 24-hour window. No new source-backed evidence about CelVivo, 3Brain, Cellink, or organoid news was available.
|
||||
- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md`.
|
||||
- **Operational note:** the connector's on-disk configuration and runtime registration remain inconsistent. Configure `TAVILY_API_KEY` in the OpenWiki runtime and refresh the connector registry before the next pull. The 2026-09-09 attempt was the **twenty-seventh consecutive skip** at the time of its attempt (twenty-eighth including the 2026-09-10 follow-up); the latest successful Tavily pull remains 2026-08-03 18:08 UTC.
|
||||
- **Operational note:** the connector's on-disk configuration and runtime registration remain inconsistent. Configure `TAVILY_API_KEY` in the OpenWiki runtime and refresh the connector registry before the next pull. The 2026-09-09 attempt was the **twenty-seventh consecutive skip** at the time of its attempt (twenty-ninth including the 2026-09-10 + 2026-09-11 follow-ups); the latest successful Tavily pull remains 2026-08-03 18:08 UTC.
|
||||
|
||||
## Prior coverage
|
||||
|
||||
|
||||
@@ -1,3 +1,9 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "Wiki.js 索引 — 跨 agent 文档发布层"
|
||||
openwiki_generated: true
|
||||
---
|
||||
|
||||
# Wiki.js 索引 — 跨 agent 文档发布层
|
||||
|
||||
> 数据源: Wiki.js (http://10.10.10.254:3000/graphql) Biokingdom 实例
|
||||
|
||||
Reference in new issue
Block a user