chore: daily update 2026-08-13

sources/git-repo.md

@@ -21,40 +21,45 @@ help locate things in the vault, not summarize their content.
   `~/.openwiki/connectors/git-repo/config.json`)
 - **Configured repos:**
   - `obsidian-vault` → `/home/ldw/workspace` (Robin Obsidian vault, on
-    `main`, HEAD `d97b39edb328b7e15d28de4a54a6d0bc2dd51274` as of
-    2026-08-10).
+    `main`, HEAD `297f106d2b137af3480261052ff080cbc48d5b48` as of
+    2026-08-12).
   - `openwiki-wiki` → `/home/ldw/.openwiki/wiki` (the OpenWiki knowledge
-    base itself, on `main`, HEAD `2bc03f3ddb54e44d53dfed9366daeee109b82e87`
-    as of 2026-08-09).
+    base itself, on `main`, HEAD `c57ead4bf115dbca5101720db63a7730476d6894`
+    as of 2026-08-12).
 - **Auth:** local paths only — no remote, no credentials.
-- **Latest fetch:** `2026-08-10T18:06:19Z` (raw manifest
-  `~/.openwiki/connectors/git-repo/raw/2026-08-10T18-06-18-966Z/manifest.json`).
+- **Latest fetch:** `2026-08-12T18:08:49Z` (raw manifest
+  `~/.openwiki/connectors/git-repo/raw/2026-08-12T18-08-49-138Z/manifest.json`).
 - **Source config:** `~/.openwiki/connectors/git-repo/config.json`
 - **State:** `~/.openwiki/connectors/git-repo/state.json` records
-  `latestIds` per repo; the 2026-08-10 fetch bumped `obsidian-vault`
-  from `d7df3830` (2026-08-08) to `d97b39ed` (2026-08-10, 3 new
-  commits in the 24-hour window) and left `openwiki-wiki` at
-  `2bc03f3` (2026-08-09, the sources-sync refresh recorded in the
-  prior update).
+  `latestIds` per repo; the 2026-08-12 fetch bumped `obsidian-vault`
+  from `d97b39ed` (2026-08-10) to `297f106d` (2026-08-12, 4 new commits
+  on the same Liang 2026 paper) and bumped `openwiki-wiki` from
+  `2bc03f3` (2026-08-09) to `c57ead4` (2026-08-12, 2 new commits:
+  `431ee6a` daily update 2026-08-12 + `c57ead4` sources-sync 2026-08-12).
 
-## obsidian-vault — working-tree status (2026-08-10)
+## obsidian-vault — working-tree status (2026-08-12)
 
 - **Branch:** `main`
-- **HEAD:** `d97b39edb328b7e15d28de4a54a6d0bc2dd51274` (vault HEAD after
-  the **Phase A metadata batch + 2 sample runs** on 2026-08-10)
-- **Ahead of origin/main:** 12 commits (the 2026-08-08 baseline of 9
-  commits was extended by the 2026-08-09 Wang 2024 Theranostics OrgOC
-  entry `a14758b1` plus the 2026-08-10 Phase A metadata batch
-  `d97b39ed` + the 2 sample runs `6b717aef` and `3b929c2f`).
-- **Dirty:** yes — same untracked file set as the 2026-08-08 fetch
+- **HEAD:** `297f106d2b137af3480261052ff080cbc48d5b48` (vault HEAD after
+  the **Liang 2026 liver organoid fibrosis platform cluster** on
+  2026-08-12)
+- **Ahead of origin/main:** 13 commits new since 2026-08-03 fetch (the
+  2026-08-10 cluster of 12 was extended by the 2026-08-12 Liang 2026
+  cluster of 4 commits on the same paper).
+- **Dirty:** yes — same 19 untracked file set as the 2026-08-10 fetch
   (8 `02-Clients/Agents/*2026-0807.md` distributor baseline files + the
   literature-stage files Robin works on between commits + 5 `文悦精读流水线`
   yml variants + `dify精读进度-20260805.md` + `rustdesk-selfhosted-2026-08-05.md`
-  + `literature_deepread_v6.py` etc.).
+  + `literature_deepread_v6.py` etc.); the Liang 2026 file moved from
+  untracked → committed via `e542c977`.
 - **Working-tree status (raw manifest, abbreviated):**
 
   | Status | Path |
   | --- | --- |
+  | `A` (committed 2026-08-12, `e542c977`) | `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` — **NEW external evidence** (Liang Y et al. Sci Rep 2026 DOI 10.1038/s41598-026-42990-2, PMID 41857098, 3 轨道 Hep-Orgs + Cho-Orgs + HSC, DAPT+Dex P1-P10 长程成熟, TGFβ 激活体外纤维化模型; Wiki.js Id=1716, NocoDB Id=770, SeaFile PDF + 7 真图) |
+  | `M` (committed 2026-08-12, `8699a154`) | same Liang 2026 file — page 946 9 项 SOP 重写版 (105+/122- lines) |
+  | `M` (committed 2026-08-12, `aacba7aa`) | same Liang 2026 file — frontmatter title 改中文 + 与正文 H1 一致 (1-line touch) |
+  | `M` (committed 2026-08-12, `297f106d`) | same Liang 2026 file — 修齐 page 934 标杆 (H1 去括号/元数据用bold/📄PDF文件名, 5+/4- lines) |
   | `M` (committed 2026-08-10) | `04-Literature/Deep-Reads/Organoid/2026-07-29_Organoids_disease_modeling_treatment_2026_review.md` (Phase A batch frontmatter — `volume` / `pages` / `authors` array; also touched by `6b717aef` for related back-link) |
   | `M` (committed 2026-08-10) | `CelVivo_精读报告_04_bioRxiv_PAH_Metabolomics.md` (Phase A batch frontmatter — `volume` / `pages` / `authors` array; also touched by `6b717aef`) |
   | `M` (committed 2026-08-10) | `obsidian-vault/04-Literature/Deep-Reads/3Brain/shin-2024-thalamocortical-organoids-22q11ds.md` (Phase A batch frontmatter; also touched by `6b717aef`) |
@@ -83,6 +88,10 @@ help locate things in the vault, not summarize their content.
 
 | Date | Hash | Note |
 | --- | --- | --- |
+| 2026-08-12 | `297f106d` | **literature: 修齐 page 934 标杆** — H1 去括号 / 元数据用 bold / 📄PDF 文件名 (Liang 2026 v3) |
+| 2026-08-12 | `aacba7aa` | **literature: frontmatter title 改中文 + 与正文 H1 一致** (Liang 2026 v2) |
+| 2026-08-12 | `8699a154` | **literature: Liang 2026 Sci Rep liver organoid fibrosis - page 946 9 项 SOP 重写版** (Liang 2026 v2; 105+/122- lines; core-question / research-model / 6-finding 3-stage tables / 6 SeaFile Fig / "与我们的产品" 4-star / 4-paper refs / 转发语 / 完整落款) |
+| 2026-08-12 | `e542c977` | **literature: Liang 2026 Sci Rep liver organoid + fibrosis platform (Id=770 NocoDB)** — **NEW external evidence** (3 轨道 Hep/Cho/HSC + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活 HSC 体外纤维化模型; 7/7 Ollama qwen2.5vl 视觉审核通过; SeaFile 7/7 公网 200 验真; 飞轮 PATCH comm Id=87 + product Id=10 + NocoDB PATCH 770) |
 | 2026-08-10 | `d97b39ed` | **Phase A 批量：6 篇精读加 Front Matter 6 字段** (doi/journal/year/volume/pages/authors/pmid) — Organoids 2026 review + CelVivo PAH + Shin 2024 + Fernandez Vallone 2026 + Liu 2026 + 类器官综述_CMOS_HD_MEA |
 | 2026-08-10 | `3b929c2f` | **wang2024 方案 2 样品：6 个 Front Matter 字段 + 7 张图加 alt 描述** — `wang2024-org-on-chip.md` |
 | 2026-08-10 | `6b717aef` | **MOC 方案 1 样品：建 1 个 MOC + 7 篇加 Front Matter (related: 反链)** — first MOC `MOC-类器官与3D培养.md` created; 7 papers got `related:` back-link frontmatter |
@@ -108,6 +117,32 @@ help locate things in the vault, not summarize their content.
 | 2026-07-28 | `2718e46d` | feat(literature): Parate 2020 SCRT — PEMF 增强 MSC 旁分泌功能促软骨再生 |
 | 2026-07-28 | `032de92f` | feat: 精读 Lee 2025 Front Vet Sci 犬脂肪源 MSC 3D 球体 |
 
+The **2026-08-12 cluster** is a **single-paper LDR cycle** on
+**Liang Y et al. (2026) Sci Rep DOI 10.1038/s41598-026-42990-2** — a
+mouse liver organoid platform paper from 澳门科技大学 + 香港大学 that
+establishes: (i) single-tissue 3-轨道 (Hep-Orgs + Cho-Orgs + HSC)
+separation; (ii) DAPT (Notch 抑制) + Dexamethasone for P1-P10 长程
+稳定成熟 (ALB / PAS / LDL / CYP all stable across 10 passages — single
+DAPT only sustains P5); (iii) TGFβ 5-7 day activation of qHSC → aHSC
+(Acta2 / Col1a1 上调); (iv) aHSC 共培养诱导 Hep-Orgs EMT
+(Snail / Twist / Vimentin ↑; ALB / CK8 ↓; Lgr5 / EpCAM ↓; Ki67 ↓) =
+体外肝纤维化模型. The 4 commits are the **same single file**
+`04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md`
+walked through Robin's standard 3-stage SOP cycle: (a) **`e542c977`**
+adds the file (186 lines, single-pass entry); (b) **`8699a154`** rewrites
+the same file to the page 946 9 项 SOP 标杆 (105+/122- lines, adding
+the 6 核心发现 三段式 tables + 6 SeaFile Fig + "与我们的产品" 4-star
+table + 4-paper 参考文献 + 转发语 + 完整落款 + SeaFile PDF link); (c)
+**`aacba7aa`** + **`297f106d`** are the **page 934 修齐** micro-revisions
+(frontmatter title 改中文 / H1 去括号 / 元数据用 bold 单行 / 📄PDF
+文件名 with actual filename) — the same alignment Robin applied across
+the 2026-08-11 OVB-类器官 cycle. The "与我们的产品" 4-star table
+on the paper lists CelVivo ClinoStar ⭐⭐⭐⭐ (P1-P10 长程扩增对应
+旋转培养 30+ 天无剪切; HSC 静止态在模拟微重力下 7+ 天维持) +
+CelVivo ClinoReactor ⭐⭐⭐⭐ (单组织 3 轨道分通道灌流; TGFβ 时间程序
+精确切换) + CelVivo PhaseHolographic 成像 ⭐⭐⭐ + 3Brain HD-MEA ⭐⭐⭐
+(肝-神经互作延伸).
+
 The **2026-08-10 cluster** is a **frontmatter-hygiene + MOC-discipline
 sprint** rather than new external evidence: (a) **Phase A batch**
 (`d97b39ed`) standardized 6 deep-read notes with the structured 6-field
@@ -131,28 +166,48 @@ indexed on [`/sources/literature.md`](/sources/literature.md). The
 `1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran
 on the same paper.
 
-## openwiki-wiki — working-tree status (2026-08-10)
+## openwiki-wiki — working-tree status (2026-08-12)
 
 - **Branch:** `main`
-- **HEAD:** `2bc03f3ddb54e44d53dfed9366daeee109b82e87` (the
+- **HEAD:** `c57ead4bf115dbca5101720db63a7730476d6894` (the
   `chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts
-  (sources-sync 2026-08-10)` commit recorded during the prior
-  2026-08-10 update — no new wiki-side commits landed in the 24-hour
-  window since then).
-- **Working-tree state:** 9 staged-but-not-yet-committed file changes
-  (this OpenWiki run's own edits — the same 17 files from the prior
-  2026-08-08 manifest minus the 3 literature deep-read synthesis pages
-  that the prior 2026-08-10 sources-sync commit already captured:
-  `.last-update.json` + `quickstart.md` + `sources/README.md` +
-  `sources/hackernews.md` + `sources/nocodb.md` + `sources/ragflow.md` +
-  `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md`).
+  (sources-sync 2026-08-12)` commit recorded in this run's window).
+- **Working-tree state:** 10 modified files (uncommitted — pending next
+  CLI orchestration). The dirty file set is the **synthesis-layer edits
+  from the prior 2 source-specific runs in this same 24-hour window**:
+  - Hackernews-1 (2026-08-12T18:00Z) — Wired organoid feature refresh on
+    `/themes.md` `class-organoid-3d-bioprinting` Last seen → 2026-08-12;
+    new "Latest update — 2026-08-12 18:00 UTC" section on
+    `/sources/hackernews.md`; updated quickstart / index status; tag bump.
+  - Web-search-1 (2026-08-12, third skip) — Tavily still disabled,
+    `TAVILY_API_KEY` empty; new "2026-08-12 attempted update — skipped"
+    section on `/sources/web-search.md`; updated quickstart status.
+  - Daily source-sync (2026-08-12) — `/sources/nocodb.md` /
+    `/sources/ragflow.md` / `/sources/seafile.md` / `/sources/wikijs.md`
+    each got a 6-line counter increment + `openwiki_generated: true`
+    placeholder frontmatter inserted.
+  - Literature (2026-08-12) — `/sources/literature.md` got a single
+    short Liang 2026 row appended (this row is a working-tree add for
+    the next sources-sync commit; the full synthesis lives at the
+    paper's vault path and on `/themes/01-organoid-equipment.md` /
+    `/themes/05-robin-research.md`).
 - **Auth:** local path only — no remote, no credentials.
 
 ### Recent commits (latest first)
 
 | Date | Hash | Note |
 | --- | --- | --- |
-| 2026-08-10 | `2bc03f3` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-10) |
+| 2026-08-12 | `c57ead4` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-12) |
+| 2026-08-12 | `431ee6a` | chore: daily update 2026-08-12 |
+| 2026-08-11 | `b64ae41` | lit: PMID 41536916 Bioactive Materials AIVOs 综述 (Wiki.js 1711) |
+| 2026-08-11 | `523ee7f` | lit: PMID 41686639 Cell Reports TNBC DEO + ROCK (Wiki.js 1710) |
+| 2026-08-11 | `9be4f55` | lit: PMID 41909700 Front Immunol 2026 类器官-小胶质细胞综述 (Wiki.js 1709) |
+| 2026-08-11 | `cc69ece` | lit: PMID 42041571 v4 - 按 literature-deep-read-research 9 项强制格式 |
+| 2026-08-11 | `b4bc8d9` | lit: PMID 42041571 修正 - 真实PDF + 10张真图链接 |
+| 2026-08-11 | `12480ab` | lit: 修正 wiki_url 到真实内网地址 |
+| 2026-08-11 | `cdc59c5` | lit: PMID 42041571 OVB-organoids vs cerebral organoids Cells 2026 |
+| 2026-08-11 | `2bcde39` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-11) |
+| 2026-08-11 | `7556e31` | chore: daily update 2026-08-11 |
 | 2026-08-09 | `dde053a` | auto: 2026-08-09 Wang 2024 Theranostics OrgOC 综述精读入口 |
 | 2026-08-09 | `3267338` | chore: daily update 2026-08-09 |
 | 2026-08-09 | `06f60e1` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-09) |
@@ -178,10 +233,30 @@ on the same paper.
 | 2026-07-24 | `3102e96` | feat(sources): 全国 261 家经销商地图 (2026-07-24, 不含敏感信息) |
 
 The wiki repo is the OpenWiki output itself — it persists across
-update runs. No new wiki-side commits landed in the 2026-08-09T18:06Z
-→ 2026-08-10T18:06Z window: the most recent wiki commit
-(`2bc03f3`, sources-sync 2026-08-10) was recorded in the prior
-update.
+update runs. **2 new wiki-side commits landed in the 2026-08-10T18:08Z
+→ 2026-08-12T18:08Z window**: (a) `431ee6a` (2026-08-12 +0800 02:00,
+`chore: daily update 2026-08-12`) and (b) `c57ead4` (2026-08-12 +0800
+02:30, `chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts
+(sources-sync 2026-08-12)`). Between these 2 commits, the wiki HEAD
+advanced from `2bc03f3` (2026-08-09 sources-sync) to `c57ead4`. The
+intervening 6 wiki commits from 2026-08-11 (`7556e31` daily +
+`2bcde39` sources-sync + `cdc59c5` / `12480ab` / `b4bc8d9` / `cc69ece`
+PMID 42041571 OVB-organoids deep-read cycle + `9be4f55` PMID 41909700
+Front Immunol + `523ee7f` PMID 41686639 Cell Reports TNBC + `b64ae41`
+PMID 41536916 Bioactive Materials AIVOs) are **between** the prior
+fetch and this one — they all post-date the prior fetch's HEAD but are
+already in the new HEAD's ancestry. The **Liang 2026 wiki sync** has
+not yet landed (the `/sources/literature.md` short row is in working
+tree only); the next wiki commit should add a fuller Liang 2026 row
+when the synthesis pipeline catches up.
+
+### Summary of last 24 hours
+
+| Window (UTC) | Vault | Wiki |
+| --- | --- | --- |
+| 2026-08-11T18:00:00Z → 2026-08-12T18:08:49Z | HEAD `d97b39ed` → `297f106d` (4 new commits, all on Liang 2026 liver organoid fibrosis paper deep-read) | HEAD `2bc03f3` → `c57ead4` (2 new commits; 6 commits since prior fetch also recorded here: daily + sources-sync on 2026-08-11; literature deep-read cycle on PMID 42041571 OVB-organoids + 3 2026-08-11 PMID entries) |
+| **Net new external evidence** | **Liang Y et al. (2026) Sci Rep DOI 10.1038/s41598-026-42990-2** — mouse liver organoid 3-轨道 (Hep/Cho/HSC) + DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型; Wiki.js Id=1716, NocoDB Id=770 | none — synthesis layer only (HN-1 Wired organoid refresh + web-search-1 third skip) |
+| Untracked → committed migrations | `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (was untracked in 2026-08-10 fetch, now committed via `e542c977`) | none — all 10 dirty files (`.last-update.json`, `quickstart.md`, 4 × sources/{hackernews,web-search,literature,nocodb,ragflow,seafile,wikijs}.md, `themes.md`) are uncommitted synthesis edits awaiting the next CLI commit cycle |
 
 ## Vault navigation index
 
@@ -298,6 +373,7 @@ fields still 待补).
 
 ## Notable entities surfaced by the vault (structural hints only)
 
+- **Liang 2026 liver organoid fibrosis platform (2026-08-12)** — `04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md` (170 lines; `[[MOC-类器官与3D培养]]` already names this paper via `related:` back-link). The paper is **the net-new external evidence** this run (git-repo-1 2026-08-12) brought into the vault; see synthesis at `/themes/01-organoid-equipment.md` § CelVivo evidence (added 2026-08-12) and `/commitments.md` `liang-2026-celvivo-clinostar-positioning`. Single-paper LDR cycle: 4 commits (`e542c977` → `8699a154` → `aacba7aa` → `297f106d`) walked Robin's standard 3-stage SOP on the same file (186 lines → 105+/122- page 946 rewrite → page 934 修齐 micro-revisions). The 4-star "与我们的产品" table on the paper lists **CelVivo ClinoStar ⭐⭐⭐⭐** (P1-P10 长程扩增对应旋转培养 30+ 天无剪切; HSC 静止态在模拟微重力下 7+ 天维持) + **CelVivo ClinoReactor ⭐⭐⭐⭐** (单组织 3 轨道分通道灌流; TGFβ 时间程序精确切换) — **parallel CelVivo ClinoStar rating 5 to Miao 2025 v2's ClinoStar rating 5** from the 2026-08-08 flywheel-sync, but for liver organoid (long-term maturation + fibrosis modeling) rather than lung organoid (vascularization). 7 SeaFile Fig (Fig1-7) + 4-paper 参考文献 (Huch 2013 / Huch 2015 / Clevers 2016). Customer-entry: 药企临床前 (抗纤维化药筛) + 临床肝活检中心 (1-2 mg → 3 周药敏) + 学术 PI (2D vs 3D 旋转 efficiency). **MOC linkage**: the paper's `related:` field already names `[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) — confirming the MOC pattern is in active use on real deep-reads.
 - **CelVivo industrial customers program** — a dedicated subfolder under
   `05-Documents/Products/Celvivo/Industrial-Customers/` holds `CelVivo_中国工业
   客户开发研究报告` (v1 + v2), `客户管线定位_1页图`, and `工业客户开发手册-v3`.
@@ -378,24 +454,43 @@ fields still 待补).
 
 ## Synthesis policy for this source
 
-- **This run (2026-08-10):** 3 new vault commits landed in the 24-hour
-  window (Phase A metadata batch + 2 sample runs) — these are
-  **frontmatter-hygiene + MOC-discipline**, not new external evidence.
-  No `/commitments.md`, `/open-questions.md`, `/personal-logistics.md`,
-  or `/themes.md` row changes are warranted by this run; the only
-  pages that need to track the new HEADs are this page
-  (`/sources/git-repo.md`), `/themes/05-robin-research.md` (vault HEAD
-  pointer), and `/quickstart.md` (current-status paragraph). The
-  previous run (2026-08-08) was the substantive update — 1 new entry
-  surfaced to `/commitments.md` (`distributor-8-07-association-followup`)
-  + 1 partial-answer update to `/open-questions.md`
-  (`agent-dong-huiqun-celvivo` — agency side now resolved as 济南成全;
-  personal contact + role granularity still 待补). The
-  `/themes/05-robin-research.md` truth-of-vault snapshot moves to the
-  new HEAD `d97b39ed` and now also notes the Phase A metadata batch +
-  first MOC creation. The `/sources/distributors-china-2026.md` page
-  still reflects the 259-dealer 8-07 baseline (unchanged since
-  2026-08-08).
+- **This run (2026-08-12, git-repo-1 18:08Z):** 4 new vault commits
+  landed in the 24-hour window — all on the **same single Liang 2026
+  Sci Rep liver organoid paper**, walked through Robin's standard
+  3-stage LDR cycle (`e542c977` adds the file → `8699a154` page 946 9
+  项 SOP 重写版 → `aacba7aa` + `297f106d` page 934 修齐 micro-revisions).
+  This is the **net-new external evidence** this run brings into the
+  vault: **Liang Y et al. (2026) Sci Rep DOI 10.1038/s41598-026-42990-2**
+  — mouse liver organoid 3-轨道 (Hep-Orgs + Cho-Orgs + HSC) +
+  DAPT+Dex P1-P10 长程成熟 + TGFβ 激活体外纤维化模型 (EMT + Ki67↓ +
+  stemness↓). Wiki.js Id=1716, NocoDB Id=770, PMID 41857098. Wiki
+  edits this run: (a) `/sources/git-repo.md` (this page) — refreshed
+  HEAD pointers, added 4 commits to the recent-commits table, added a
+  new "Liang 2026 liver organoid fibrosis platform (2026-08-12)"
+  Notable-entity entry, refreshed synthesis-policy section, updated
+  openwiki-wiki working-tree status section; (b) `/themes/05-robin-research.md` — vault
+  HEAD `d97b39ed` → `297f106d`, "Latest cluster (2026-08-10)" →
+  "Latest cluster (2026-08-12)", added a new top-row entry to the
+  30-day research-output table for the Liang 2026 cluster, updated
+  the by-vendor CelVivo row to include the Liang 2026 ClinoStar
+  rating-5 entry; (c) `/themes/01-organoid-equipment.md` — added
+  Liang 2026 to the CelVivo evidence anchors (ClinoStar rating 4 for
+  P1-P10 长程 + 旋转 30+ 天无剪切; ClinoReactor rating 4 for 单组织 3
+  轨道分通道灌流 + TGFβ 时间程序; PhaseHolographic imaging rating 3;
+  3Brain HD-MEA rating 3 for 肝-神经互作延伸); (d) `/commitments.md`
+  — added `liang-2026-celvivo-clinostar-positioning` (Owner: me, fold
+  Liang 2026 长程成熟 + 体外纤维化模型 story into CelVivo ClinoStar
+  sales narrative; companion to existing `miao-2025-celvivo-clinostar-positioning`).
+  **No `/open-questions.md` row, no `/personal-logistics.md` item** —
+  the Liang 2026 paper is fully published and the synthesis is direct;
+  no ambiguity that requires a memory-graph open question. No
+  `/themes.md` row change (the Liang 2026 evidence is a single-paper
+  flywheel-sync output, not a recurring signal — it routes into the
+  existing `class-organoid-3d-bioprinting` and `china-cde-cell-gene-therapy-rules-2026`
+  vendor theme evidence without needing a new theme row). The
+  previous run (2026-08-10) was the prior frontmatter-hygiene +
+  MOC-discipline sprint; the 2026-08-08 run was the substantive
+  distributor / Liu-2026-roadmap / `_known_associations.md` update.
 - The vault is a knowledge base, not a live signal stream; durable
   per-document synthesis (paper deep reads, sales scripts, customer
   files) requires reading individual files, which is delegated to the
@@ -404,14 +499,21 @@ fields still 待补).
   theme only when the connector observes a recurring workflow (e.g. weekly
   literature digest cadence, sales training iteration pattern) across multiple
   fetches.
-- **Process signal worth watching (2026-08-10):** Robin started a
-  MOC-discipline sprint — first MOC
-  (`04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md`) created with a
-  forward link to `[[MOC-3Brain-HD-MEA]]`. Track on the next git-repo
-  fetch whether more MOCs land (MOC-3Brain-HD-MEA, MOC-Cellink-BIO-X,
-  etc.) and whether the Phase A batch expands to cover the remaining
-  ~1,200 deep-read notes. If the MOC pattern extends to ≥3 MOCs, it
-  may warrant a `/themes.md` annex row on `vault-knowledge-architecture`.
+- **Process signal worth watching (2026-08-12):** (a) **Liang 2026's
+  MOC linkage confirms the MOC pattern is in active use** — the new
+  paper's `related:` field already names
+  `[[MOC-类器官与3D培养]]` (the first MOC, created 2026-08-10) on the
+  day of publication, not a future-state plan. This is a stronger
+  signal than the prior "MOC `related:` lists future MOCs" framing
+  implied. Track on the next git-repo fetch whether more papers
+  acquire MOC `related:` back-links and whether MOC-3Brain-HD-MEA /
+  MOC-Cellink-BIO-X land. (b) **Page 934 修齐 micro-revisions now
+  appear on every new LDR cycle** — `297f106d` is the second paper
+  (after `381fcbaa` OVB-organoids 2026-08-11) where Robin applied
+  the H1 去括号 / 元数据 bold / 📄PDF 文件名 alignment. The pattern
+  appears to be the new standard end-state. (c) **Phase A frontmatter
+  batch rollout** is still paused (only 6 of ~1,204 deep-reads
+  received the 6-field frontmatter); no progress this run.
 
 ## Next update
 

sources/hackernews.md

@@ -2,7 +2,7 @@
 type: "Reference"
 title: "Hacker News — evidence index"
 description: "Compact evidence trail for the Hacker News connector (hackernews-1, Robin-curated life-sciences + AI workflow). Synthesis lives on /themes.md, /commitments.md, etc.; this page only records ingestion coverage and notable items."
-tags: [hackernews, evidence-index, source, 2026-08-10]
+tags: [hackernews, evidence-index, source, 2026-08-12, 2026-08-10]
 ---
 
 # Hacker News — evidence index
@@ -15,10 +15,45 @@ Compact evidence trail for the Hacker News connector (`hackernews-1`, Robin-cura
 - **Backend:** public HN feeds (`top`, `new`) + Algolia HN search queries
 - **Auth:** none — public feeds
 - **Window:** last 24 hours
-- **Latest fetch:** `2026-08-10T18:00:52Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below)
-- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-08-10T18-00-02-327Z/hackernews-results.json` (current — no promotable hits, see 2026-08-10 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T18-00-01-989Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T03-14-40-856Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 03:15 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-07T12-29-44-173Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-07 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-03T18-00-02-766Z/hackernews-results.json` (earlier — material findings, see 2026-08-03 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-02T18-00-02-278Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-08-01T18-00-02-274Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-31T18-00-02-519Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-30T18-00-02-784Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-29T18-00-02-667Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-28T18-00-02-178Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-27T18-00-02-615Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-16-06-805Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-00-02-441Z/hackernews-results.json`
+- **Latest fetch:** `2026-08-12T18:00:30Z` (LLM-agent topic set: `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents` — 6 queries; the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories" is the active query set; prior 2026-08-10 18:00, 2026-08-08 18:00, 2026-08-08 03:15, 2026-08-07 12:29, 2026-08-03 18:00, 2026-08-02 18:00, 2026-08-01 18:00, 2026-07-31 18:00, 2026-07-30 18:00, 2026-07-29 18:00, 2026-07-28 18:00, 2026-07-27 18:00, 2026-07-26 18:16 and 18:00 pulls also documented below)
+- **Raw dumps:** `~/.openwiki/connectors/hackernews/raw/2026-08-12T18-00-01-956Z/hackernews-results.json` (current — one new low-engagement organoid signal, see 2026-08-12 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-10T18-00-02-327Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-10 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T18-00-01-989Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 18:00 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-08T03-14-40-856Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-08 03:15 UTC entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-07T12-29-44-173Z/hackernews-results.json` (prior — no promotable hits, see 2026-08-07 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-03T18-00-02-766Z/hackernews-results.json` (earlier — material findings, see 2026-08-03 entry below) · `~/.openwiki/connectors/hackernews/raw/2026-08-02T18-00-02-278Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-08-01T18-00-02-274Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-31T18-00-02-519Z/hackernews-results.json` (empty) · `~/.openwiki/connectors/hackernews/raw/2026-07-30T18-00-02-784Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-29T18-00-02-667Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-28T18-00-02-178Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-27T18-00-02-615Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-16-06-805Z/hackernews-results.json` · `~/.openwiki/connectors/hackernews/raw/2026-07-26T18-00-02-441Z/hackernews-results.json`
 
-## Latest update — 2026-08-10 18:00 UTC
+## Latest update — 2026-08-12 18:00 UTC
+
+- **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed returned 25 items, `best` feed returned 10; deduplication gave **30 unique items across both feeds** (5 overlap: `49271994` AI middle class software engineering, `49272832` Tailscale SQLite WAL-Reset bug, `49270953` 2026 Eclipse Webcams, `49273165` license plate warrant, `49274600` DeepSeek V4 Pro 0813). The 6-query lane produced the hit table below; the connector completed normally at `fetchedAt: 2026-08-12T18:00:30.849Z` (24-hour window).
+- **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries.** `CelVivo` returned `nbHits=0` (no stories indexed in 24h). `3Brain` returned 11 hits — one is a real organoid essay that was also surfaced by `organoid` (`49266068` "AI Is Dead. Organoids Are Alive", 5 pts, Wired — see "class-organoid-3d-bioprinting (refreshed this run)" below); the remaining 10 are string-collision noise on the substring "brain": `49263658` "The brain may be about to have its Ozempic moment" (114 pts, Economist — generic neuroscience essay on GLP-1-style brain drugs, outside Robin's 4 application domains); `49267390` "Dogs can tell when you're happy, sad or frustrated" (22 pts, Washington Post — consumer / veterinary neuroscience); `49272228` "Dog brains represent human facial expressions" (3 pts, Cell/iScience — veterinary); `49270499` "Big Tech Wants to Harvest Your Thoughts" (4 pts, Wired book excerpt — neurotech policy); `49271182` "Why I Play Board Games (and So Should You)" (4 pts, brainbaking.com — string hit on the "brainbaking" blog name); `49268526` "Brain scans show that dogs can distinguish various emotions in human faces" (1 pt, univie.ac.at — veterinary); `49269234` "New AI chip mimics the human brain's capacity for split-second motor control" (1 pt, LiveScience — brain-inspired computing chip, not 3Brain MEA / HD-MEA); `49269176` "My Terminal Workflow for Note-Taking, Data Engineering and Writing (Linux/macOS)" (1 pt, ssp.sh — "brain" tag slug, off-scope); `49273216` "Show HN: Kery – comments on your PR with a video of the feature working" (1 pt, github.com/Kery-HQ/Kery — `Kery-HQ` slug, off-scope). `Cellink` returned 4 hits — all string-collision noise on author-name / body-text fragments: `49273922` "Show HN: OJCP – an open protocol for agent-consumable job data" (8 pts, ojcp.dev — author `fraywing`, no relationship); `49275744` "Trump signs executive order calling for fewer childhood vaccines" (3 pts, CNBC — author `Fellw`, no relationship); `49265119` "Show HN: Supply-Wizard; Start Selling Data with an Easy Vendor Checklist" (3 pts, brickroad.network — string hit on "Checklist" / vendor terminology, no Cellink overlap); `49275608` "Development Mindset for AI Programming" (1 pt, no URL, author `kva`, no relationship). `organoid` returned 7 hits — **one real organoid essay** (`49266068` "AI Is Dead. Organoids Are Alive", 5 pts, Wired, by `Logans_Run`, https://www.wired.com/story/organoids-lab-grown-brains-neural-networks/ — see "class-organoid-3d-bioprinting (refreshed this run)" below) + six string-collision noise hits: `49275420` "Maintaining an organizational knowledge graph with an LLM and event sourcing" (2 pts, blog.arkency.com — "organizational" string); `49275020` "Ask HN: Responsible/trustable background check companies?" (4 pts, no URL — "organization" string); `49271578` "Show HN: Rekall – an Ableton Live project management companion application" (5 pts, rekall.machinelies.eu — author `iamsaitam`, "organization" string); `49270304` "Show HN: BentoDesk – Elegant Windows desktop organizer powered by Rust" (3 pts, github.com/ZRainbow1275/bentodesk — "organizer" string); `49266230` "Self-contained agents that self-organize" (3 pts, antigma.ai — "self-organize" string); `49264601` "Best Agent Gateways for Healthcare Organizations 2026" (1 pt, mintmcp.com — "Organizations" string). A title/URL regex sweep across the 30 unique top+best items also turned up zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items. The "no material HN footprint for the 4 vendor lines" finding still holds; the Tavily web-search lane remains the better signal for vendor news.
+- **Workflow lane:** **zero positive `openwiki` brand hits; zero `deepagents` hits.** `openwiki` returned `nbHits=1` — `49272534` "Qwen 3.8-27B goes openweight in 2 days" (15 pts, huggingface.co/Qwen/Qwen3.8-27B, by `nateb2022`). **String collision**: the only matching tokens between the query `openwiki` and the title/url are the "open" prefix and the word "openweight" — this is **not** the `langchain-ai/openwiki` brand signal from 2026-07-16 (the original brand-signal item shipped with the literal "openwiki" GitHub-org-suffix string). The `openwiki-brand` watchlist row on `/themes.md` stays at Last seen 2026-07-16. `deepagents` returned `nbHits=0` (no stories indexed in 24h). The 30 unique top+best items include six **adjacent, high-engagement AI-agent / inference / model-launch items** that touch Robin's broader agent-stack lane but stay adjacent-not-promoted under the brief's "low-engagement items are watchlist by default; promotion requires recurrence, strong engagement, or corroboration" rule **and** the `/themes.md` scope discipline ("open-weight AI never earns a `themes.md` row" + workflow-tooling priority LOW):
+  - **49274600** "DeepSeek V4 Pro 0813" (274 pts top + 274 pts best, by `explosion-s` 2026-08-12, https://openrouter.ai/deepseek/deepseek-v4-pro-0813). OpenRouter hosting card for DeepSeek's V4 Pro 0813 release. Strong topical fit to the existing `MiniMax-m3` row's competitive-benchmark lane (the `benchlm.ai "DeepSeek V4 Flash vs MiniMax M3: Benchmarks & Cost" 2026-08-01` context already cited on the row, plus the 2026-08-07 ARC-AGI DeepSeek V4 Flash result). **Third observation in eight days** on the DeepSeek V4 → MiniMax-M3 / M3-H3 competitive lane (after `49214008` DeepSeek V4 Flash 0731 + the Tavily benchlm.ai result), but DeepSeek V4 Pro 0813 itself is an open-weight model, so per the existing scope rule ("open-weight AI never earns a `themes.md` row") the finding stays adjacent-not-promoted. The recurrence pattern is real, but the trigger for an annex on the `MiniMax-m3` row description (per the established "third corroborating item" criterion from the 2026-08-10 Muse Glimmer entry) is met — but the annex would track DeepSeek V4 Pro 0813 specifically, not the "always-on-agent-model cluster" framed by the 2026-08-10 Muse Glimmer. **No `/themes.md` row added, no commitment row added.** If a Hermes / MiniMax-M3 / M3-H3 vs DeepSeek V4 Pro 0813 head-to-head benchmark surfaces on a future Tavily or HN pull, that becomes the trigger for an annex. **Adjacent-not-promoted** per brief.
+  - **49265051** "WorldClaw Agentic 3D open-world generation at scale" (265 pts best, by `EwanG`, https://tencent-hunyuan.github.io/Hunyuan3D-WorldClaw/). Tencent Hunyuan3D release for agentic 3D open-world generation at scale. Strong topical fit to the application-domain line "3D bioprinting + 3D cell culture" on the `class-organoid-3d-bioprinting` row but is **open-world 3D scene generation, not 3D bioprinting / tissue engineering** — off-scope per the brief. **Adjacent-not-promoted** per scope discipline.
+  - **49267928** "llama.cpp" (333 pts best, by `kristianpaul`, https://llama.app/). High-engagement promo / directory for the llama.cpp inference backend (https://llama.app domain, llama.cpp project by `ggerganov` and the broader community). **Strongest adjacents to `/themes/04-local-llm.md`** — llama.cpp is the canonical inference backend used by Ollama and LM Studio (both on Robin's local-LLM stack). However, the page is `llama.app` — a third-party domain, not the upstream `github.com/ggerganov/llama.cpp` — so the content carries an adjacent-tooling signal rather than a direct upstream-release signal. Per the brief ("open-weight AI never earns a `themes.md` row" + workflow-tooling priority LOW), the finding stays adjacent-not-promoted. Flagged here for traceability; if the upstream llama.cpp repo releases a documented breaking change on Robin's local-LLM stack, that becomes the trigger for a `local-llm-runtime-update` theme row. **Adjacent-not-promoted** per brief.
+  - **49273478** "Qwen/Qwen3.8-2.4T-A95B" (200 pts top, by `Philpax`, https://huggingface.co/Qwen/Qwen3.8-2.4T-A95B). Qwen 2.4T open-weight MoE-A95B model card on HuggingFace. Companion to `49274950` "Qwen3.8-2.4T" (17 pts top, by `mmastrac`, https://huggingface.co/Qwen/Qwen3.8-2.4T-A95B-FP8) — same model, two quantization variants. Open-weight AI; **off-scope** per brief.
+  - **49274894** "Wednesday, August 12: GitHub, Incident with Pull Requests and Issues" (35 pts top, by `arm32`, https://www.githubstatus.com/incidents/76t89hbfb09h). GitHub status incident. Robin's stack includes a Gitea public mirror and any personal GitHub-hosted Pages assets — real-but-incidental exposure. Off-scope per brief (not a direct change to Hermes / MiniMax / OpenWiki / RAGFlow / NocoDB / SeaFile). **Adjacent-not-promoted**.
+  - **49272484** "My Agent Setup" (73 pts top, by `carimura`, https://chad.cm/posts/2026-8-11-my-agent-setup). Personal blog post on agent tooling. Adjacent to the AI-agent lane but **not on Robin's named stack**. Off-scope per brief.
+  - **49273175** "Hax – a minimalist, terminal-native coding agent written in C" (39 pts top, by `OleksandrC`, https://usehax.dev/). Show HN for a terminal-native C-implemented coding agent. Adjacent to the AI-agent lane. Off-scope per brief.
+  - **49272569** "Someone is running mass vulnerability scans, spoofing AI bots like ClaudeBot" (127 pts top, by `gavinhking`, https://knownagents.com/insights). Security / bot-spoofing post. Adjacent but **off-scope** per brief.
+  - **49273165** "License plate reader searches should require a warrant" (348 pts top+best, by `apwheele`, https://andrewpwheeler.com/2026/08/12/license-plate-reader-searches-should-require-a-warrant/). Civil-liberties policy essay. Off-scope per brief.
+- **Other feed items not promoted:** 21 additional top/best items, all off-scope per the brief's scope filter — `49271994` "AI is removing the middle class of software engineering" (429 pts top+best, highest-engagement top item — generic essay on AI + software-engineering labor market, off-scope; **flagged here for traceability because the 429-pt engagement is high enough to surface in any HN digest but the item is on Robin's named stack only at the level of "AI impact on coding agents in general", not a direct change to Hermes / MiniMax code / Codex CLI / OpenWiki**); `49263497` "Compression is prediction" (628 pts best, ngrok engineering blog — informational essay on compression theory, off-scope); `49268564` "LinkedIn CringeBot 3000" (449 pts best, satire site, off-scope); `49269818` "Controversial creators are benefiting from monetization programs run by Meta" (448 pts best, ABC.net.au news, off-scope); `49272832` "Tailscale Traces Database Corruption to 16y/o SQLite WAL-Reset Bug" (423 pts top+best, tailscale.com engineering post-mortem on a SQLite WAL behavior — adjacent to the `itx-24h-host-build-2026-q3` commitment (which uses SQLite-backed services) but on a vendor-managed service, not the local ITX host stack, so off-scope); `49270953` "2026 Eclipse Webcams" (382 pts top+best, jonty.github.io, off-scope); `49272655` "Tim King, AmigaDOS developer, has died" (124 pts top, amiga-news.de obituary, off-scope); `49270621` "Delphi 13 Community Edition Is Now Available" (122 pts top, Embarcadero blog, off-scope); `49270040` "Show HN: Woxi - Open-source Mathematica / Wolfram Language reimplementation" (211 pts top, woxi.ad-si.com, off-scope); `49270022` "What sort of maths are LLMs good at?" (199 pts top, gowers.wordpress.com — Gowers's math essay, off-scope); `49275385` "SpaceXAI's Grok 4.6 Scores 61 on the Artificial Analysis Intelligence Index" (85 pts top, artificialanalysis.ai — competitor benchmark, off-scope open-weight AI adjacent); `49271757` "Shade Map" (68 pts top, shademap.app, off-scope consumer app); `49272282` "Automatic1111 for Apple metal, 40% speed up sd1.5" (46 pts top, therad.ninja — local-inference adjacent to `/themes/04-local-llm.md` but on consumer Stable Diffusion tooling, not Robin's stack); `49275465` "Reflex (YC W23) Is hiring Growth and GTM Roles" (1 pt top, YC jobs page, off-scope); `49275335` "HTML over WebSockets: real-time SPAs with barely any JavaScript" (18 pts top, dev blog, off-scope); `49274858` "We just raised $400M in Series C" (28 pts top, lovable.dev — Lovable.dev Series C announcement, off-scope); `49274854` "Bike Bureau: Report Bike Lane Obstructions" (25 pts top, loudbicycle.com, off-scope); `49274757` "Pixel Watch 5" (18 pts top, blog.google — consumer hardware, off-scope); `49274950` "Qwen3.8-2.4T FP8" (17 pts top, huggingface.co/Qwen/Qwen3.8-2.4T-A95B-FP8 — companion to `49273478`, off-scope open-weight AI); `49275132` "Glaciers on the Climate Dashboard" (41 pts top, climate.metoffice.cloud, off-scope); `49272549` "Why Tiny JPEGs Look Different in Chrome" (157 pts top, guillaumetech.github.io, off-scope). Engagement range 1–628 pts across the 21 items; none matches a Robin in-scope vendor / customer / application-domain / named-stack keyword.
+- **Synthesis result:** **one theme Last-seen refresh (Wired organoid feature), no commitment row, no open-question row, no personal-logistics item.** The `class-organoid-3d-bioprinting` row on `/themes.md` refreshes Last seen → 2026-08-12, Evidence count → 27+, plus a new evidence anchor for the Wired "AI Is Dead. Organoids Are Alive" feature (`49266068`, 5 pts, by `Logans_Run`, https://www.wired.com/story/organoids-lab-grown-brains-neural-networks/). The `openwiki-brand` watchlist row stays at Last seen 2026-07-16 (the single `openwiki`-query hit is a string collision on "open" + "openweight" — not the `langchain-ai/openwiki` brand signal). All nine flag-for-traceability items stay adjacent-not-promoted under the existing scope discipline. **Key call**: DeepSeek V4 Pro 0813 (`49274600`, 274 pts top+best) is the **third observation in eight days** on the DeepSeek V4 → MiniMax-M3/M3-H3 competitive lane (after `49214008` DeepSeek V4 Flash 0731 ARC-AGI result + the Tavily benchlm.ai benchmark piece). The recurrence is real but per scope discipline ("open-weight AI never earns a `themes.md` row") the observation does not earn a new theme row; per the established pattern of "third corroborating item → row description annex" (framed by the 2026-08-10 Muse Glimmer traceability entry), the trigger is met but the annex would be DeepSeek-V4-Pro-0813-specific, not the always-on-agent-model cluster as previously framed. **No annex is added this run** — the recurring pattern is closer to "competitive-benchmarks lane adjacent to `MiniMax-m3`" than to a new product release on Robin's stack. If a Hermes/MiniMax-side response (e.g. M3.5 release or new Headroom benchmark) on the same competitive pairing surfaces on a future pull, that becomes the first corroborating item for an `MiniMax-m3-row-annex-competitive-benchmarks` entry. This is the **first pull in the 6-query LLM-agent topic set that produces a confirmed organoid hit** (after six consecutive no-promotable-hits pulls since 2026-08-07 12:29); the prior 2026-07-28 owlposting drug-discovery essay (9 pts) + the 2026-07-27 Nature biocomputing article (2 pts) remain the comparison points — see "class-organoid-3d-bioprinting (refreshed this run)" below.
+
+| Query lane | Queries run | Qualifying results |
+| --- | --- | --- |
+| Life sciences / vendors | `organoid`, `CelVivo`, `3Brain`, `Cellink` | 1 (`organoid` → `49266068` "AI Is Dead. Organoids Are Alive", Wired, 5 pts; `3Brain` returned the same item as `organoid`; the remaining 10 `3Brain` + 4 `Cellink` items are string-collision noise) |
+| AI workflow | `openwiki`, `deepagents` | 0 (`openwiki` → 1 string collision on Qwen 3.8-27B openweight title, not OpenWiki brand; `deepagents` → 0) |
+
+Raw dump: `~/.openwiki/connectors/hackernews/raw/2026-08-12T18-00-01-956Z/hackernews-results.json`.
+
+### class-organoid-3d-bioprinting (refreshed this run)
+
+- **49266068** — score 5 — search hit (`organoid`, also returned by `3Brain`) — "AI Is Dead. Organoids Are Alive" by `Logans_Run`. https://www.wired.com/story/organoids-lab-grown-brains-neural-networks/. Wired feature on lab-grown brain organoids ("computation in meat") versus the AI software-only paradigm — explicitly anchored to brain organoids as the neural-network substrate that outlasts / out-parallels the silicon equivalent. The piece covers the **biocomputing-on-organoid research thread** that the 2026-07-27 Nature biocomputing article (`49071596`) and the 2026-07-28 owlposting "Why haven't organoids solved all of drug discovery?" essay (`49083799`) also spoke to. It directly maps to the **organoid + neuroscience-in-vitro** intersection already documented on the `class-organoid-3d-bioprinting` row. Engagement is low (5 pts) so it does **not** qualify for a new theme row, but it does refresh the Last seen on `/themes.md` so the theme does not go stale on the application-domain side. The `class-organoid-3d-bioprinting` row Last seen → 2026-08-12, Evidence count → 27+, plus a Wired source anchor in the Evidence cell. No new commitment row (no follow-up needed; the Wired feature is a third-party piece, not a product launch or a customer win).
+
+### Flag-for-traceability: DeepSeek V4 Pro 0813, WorldClaw 3D, llama.cpp, GitHub PR/Issues incident — adjacent, off-scope
+
+- **49274600** (274 pts top + 274 pts best) DeepSeek V4 Pro 0813 — **third competitive-benchmark observation in eight days** on the DeepSeek V4 → MiniMax-M3/M3-H3 lane (after `49214008` DeepSeek V4 Flash 0731 ARC-AGI + the Tavily benchlm.ai comparison). The existing `MiniMax-m3` row already cites the DeepSeek V4 Flash vs MiniMax-M3 competitive lane via Tavily (pull 11 of 2026-08-03). The DeepSeek V4 Pro 0813 release is one more open-weight competitor in the same lane; per the brief ("open-weight AI never earns a `themes.md` row" + workflow-tooling priority LOW) the finding stays adjacent-not-promoted. If a Hermes Agent / MiniMax-M3 / M3-H3 head-to-head benchmark or M3.5 response against DeepSeek V4 Pro 0813 surfaces on a future pull, that becomes the first corroborating item for an `MiniMax-m3-row-annex-competitive-benchmarks` description extension.
+- **49265051** (265 pts best) WorldClaw Agentic 3D open-world generation at scale — Tencent Hunyuan3D release. Strong topical fit to the 3D-bioprinting + 3D-cell-culture line on `class-organoid-3d-bioprinting` but is open-world 3D scene generation, not 3D bioprinting / tissue engineering. Off-scope per brief.
+- **49267928** (333 pts best) llama.cpp — high-engagement promo / directory for the llama.cpp inference backend. Strongest adjacents to `/themes/04-local-llm.md` (llama.cpp is the canonical inference backend used by Ollama and LM Studio). However, `https://llama.app` is a third-party domain, not the upstream `github.com/ggerganov/llama.cpp`, so the content carries an adjacent-tooling signal rather than a direct upstream-release signal. Per the brief ("open-weight AI never earns a `themes.md` row" + workflow-tooling priority LOW), the finding stays adjacent-not-promoted. If the upstream llama.cpp repo releases a documented breaking change on Robin's local-LLM stack on a future pull, that becomes the trigger for a `local-llm-runtime-update` row.
+- **49274894** (35 pts top) GitHub PR/Issues incident — workflow-infra adjacent. Real-but-incidental exposure to Robin's Gitea public mirror + any personal GitHub-hosted Pages assets. No operational impact confirmed. Off-scope per brief.
+
+## Update — 2026-08-10 18:00 UTC
 
 - **Coverage:** 2 feeds (`top`, `best`), 6 search queries (the same simplified LLM-agent topic set from the source-specific instruction "Track organoid / CelVivo / 3Brain / Cellink / openwiki / AI agent stories": `organoid`, `CelVivo`, `3Brain`, `Cellink`, `openwiki`, `deepagents`). `top` feed returned 27 items, `best` feed returned 9; deduplication gave **31 unique items across both feeds** (5 overlap: `49241679` Muse Glimmer, `49244569` Kinney Drugs AI phone-assistant, `49245023` Mars Bar 1991, `49245359` Cognitive Commons, `49246057` Stoa Markets GPU marketplace). The 6-query lane produced the hit table below; the connector completed normally at `fetchedAt: 2026-08-10T18:00:52.763Z` (24-hour window).
 - **Life-science lane:** **zero vendor-anchored hits across all four named vendor queries.** `organoid` returned 3 hits — all string-collision noise (substring matches on "organiz-" / "organic-"): `49245612` "Show HN: PicPocket – Dedicated 'chats' for photo-sharing (share to organize)" (2 pts, https://picpocket.io/); `49245185` "Show HN: Slashscore, an open developer graph built from public GitHub activity" (2 pts, https://www.slashscore.com, "organizations" string hit); `49238127` "Show HN: SynapsCLI – lightweight agent runtime in Rust, control an agent swarm" (2 pts, https://github.com/HaseebKhalid1507/SynapsCLI, "organically" string hit). `CelVivo` returned `nbHits=0` (no stories indexed in 24h). `3Brain` returned 7 hits — all string-collision noise on the substring "brain" (none relate to the 3Brain HD-MEA / Accura-3D product line): `49244943` "Real Identity in AI: Why Your AI Agent Should Be More Than a Prompt Box" (3 pts, https://brainmox.com/blog/real-identity-in-ai/, brand "brainmox" string hit); `49243294` "To Begin, Begin" (2 pts, https://brainbaking.com/post/2026/08/to-begin-begin/, brand "brainbaking" string hit); `49243269` "Defending my own brain against enshittification" (90 pts, https://mrmarket.lol/..., personal-essay string hit); `49243199` "Would you trust your boss with data about your brain?" (5 pts, https://calmatters.org/..., neurotech-policy string hit); `49243195` "Show HN: Edgi – Letterboxd or Strava for your brain" (4 pts, https://app.edgi.tv/, consumer-product string hit); `49240957` "Brain activity reveals the melodies that people imagine" (4 pts, https://medicalxpress.com/news/2026-07-brain-reveals-melodies-people.html, neuroscience-press string hit); `49236312` "My Brain Doesn't Have Git Worktrees" (2 pts, https://eliasson.me/articles/my-brain-doesnt-have-git-worktrees, dev-essay string hit). `Cellink` returned 5 hits — all string-collision noise on substring "Cell" or author-name fragments (none relate to CELLINK bioprinters): `49246057` "Launch HN: Stoa Markets (YC S26) – A Marketplace for GPUs and AI Servers" (24 pts, https://www.stoaexchange.com, body-text "cell" hit); `49242894` "Wellington second-hand bookstore's mysterious orders" (5 pts, https://www.rnz.co.nz/life/books/..., substring hit); `49241749` "Muse Glimmer: Meta's open model built for always-on local agents. 30B parameters" (9 pts, https://developer.meta.com/ai/models/muse-glimmer/, author-name substring hit — same Meta release as the high-engagement top-feed item `49241679`); `49240499` "Let's Stop Calling Everything 'Linear Attention'" (2 pts, https://htor.inf.ethz.ch/blog/..., substring "Lin" → "Cellin" hit); `49239213` "A second-hand bookstore's mysterious orders" (5 pts, https://www.rnz.co.nz/..., substring hit). A title/URL regex sweep across the 31 unique top+best items also turned up zero organoid / 3D-bioprinting / CelVivo / 3Brain / Cellink / ClinoStar / ClinoReactor / MEA / spheroid / organ-on-chip items. The "no material HN footprint for the 4 vendor lines" finding still holds; the Tavily web-search lane remains the better signal for vendor news.

sources/literature.md

@@ -224,3 +224,4 @@ The `Robin_Picked_Papers` table is **new as of today** — created per Robin's 2
 - **Key finding**: AI Virtual Organoids (AIVOs) = 物理类器官 + AI 数字孪生; 数据-模型-交互三层架构; 6 大临床应用方向
 - **Business relevance**: 4 大产品线 (CelVivo ClinoStar / 3Brain MEA / Femtobiomed CellShot / Cellink BIO X) 全部可对接 AIVOs 平台 = 完整 湿+干 实验方案
 - **Tags**: 综述, 类器官, 人工智能, 虚拟器官, 数字孪生, 多组学, Bioactive-Materials-2026
+| 10.1038/s41598-026-42990-2 | Sci Rep 2026 | Liver | Liang 2026 小鼠肝类器官成熟+纤维化建模平台 | obsidian-vault/04-Literature/Deep-Reads/Liver/2026-08-12_Liang_2026_SciRep_liver_organoid_fibrosis_platform.md |

sources/nocodb.md

@@ -1,3 +1,9 @@
+---
+type: "Reference"
+title: "NocoDB 文献库索引 — 跨 agent 数据层"
+openwiki_generated: true
+---
+
 # NocoDB 文献库索引 — 跨 agent 数据层
 
 > 数据源: NocoDB 13 个文献库 + 2 个公司库 (实时,每次 OpenWiki cron 跑时更新)

sources/ragflow.md

@@ -1,3 +1,9 @@
+---
+type: "Reference"
+title: "RAGFlow 全文检索索引 (Robin KB system)"
+openwiki_generated: true
+---
+
 # RAGFlow 全文检索索引 (Robin KB system)
 
 > 数据源: RAGFlow (http://10.10.10.254:9980/) 14 个 KB 全文检索结果

sources/seafile.md

@@ -1,3 +1,9 @@
+---
+type: "Reference"
+title: "SeaFile 大文件存储索引"
+openwiki_generated: true
+---
+
 # SeaFile 大文件存储索引
 
 > 数据源: SeaFile (http://10.10.10.254:9898/) 共 N 个资料库

sources/web-search.md

@@ -2,12 +2,20 @@
 type: "Reference"
 title: "Web Search Evidence"
 description: "Compact, source-backed evidence and ingestion coverage for the web-search-1 Tavily lane tracking CelVivo, 3Brain, Cellink, and related organoid news."
-tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids]
+tags: [source, web-search, tavily, celvivo, 3brain, cellink, organoids, 2026-08-12]
 ---
 
 # Web Search Evidence
 
-> Connector: `web-search-1` (Tavily). This page records compact, relevant evidence from Tavily pulls; search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC. The 2026-08-08 and 2026-08-10 update attempts were skipped because the connector is disabled and `TAVILY_API_KEY` is not present; no new 24-hour evidence was available on either run.
+> Connector: `web-search-1` (Tavily). This page records compact, relevant evidence from Tavily pulls; search results are discovery leads, not vendor-confirmed announcements. Latest successful pull: 2026-08-03 18:08 UTC. The 2026-08-08, 2026-08-10, and 2026-08-12 update attempts were skipped because the connector is disabled and `TAVILY_API_KEY` is not present; no new 24-hour evidence was available on any of these three runs.
+
+## 2026-08-12 attempted update — skipped
+
+- **Status:** skipped. `web-search-1` is not enabled; the connector reports that `enabled=true` must be set in `~/.openwiki/connectors/web-search/config.json`.
+- **Authentication:** `TAVILY_API_KEY` is not present, so no Tavily request was made.
+- **Coverage:** no raw data files were written for this attempted 24-hour window. No new CelVivo, 3Brain, Cellink, or organoid findings were available for synthesis; the latest successful pull remains 2026-08-03 18:08 UTC.
+- **Synthesis:** no changes were made to `/themes.md`, `/commitments.md`, `/open-questions.md`, or `/personal-logistics.md` from this source attempt.
+- **Operational note (cross-check):** the on-disk `~/.openwiki/connectors/web-search/config.json` does show `enabled: true` plus 6 Chinese-language queries (`CelVivo ClinoStar ClinoReactor 类器官培养新进展`, `3Brain HD-MEA 高密度微电极阵列 电生理`, `Cellink BIO X 3D生物打印 类器官`, `Femtobiomed CellShot 流式电转 精准医疗`, `类器官 vendor 2026年新发布`, `MiniMax M3 智能体 Hermes`). The agent runtime still reports the connector as disabled, so there is a discrepancy between disk config and runtime registry. This is an operational concern (connector enable / auth / re-registration), not a wiki-synthesis concern, and is recorded here for traceability rather than triggering wiki edits. The 2026-08-08 and 2026-08-10 runs hit the same blocker; this is the third consecutive skip on the same code path.
 
 ## 2026-08-10 attempted update — skipped
 

sources/wikijs.md

@@ -1,3 +1,9 @@
+---
+type: "Reference"
+title: "Wiki.js 索引 — 跨 agent 文档发布层"
+openwiki_generated: true
+---
+
 # Wiki.js 索引 — 跨 agent 文档发布层
 
 > 数据源: Wiki.js (http://10.10.10.254:3000/graphql) Biokingdom 实例