chore: daily update 2026-09-03
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---
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type: "Reference"
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title: "Git repo"
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openwiki_generated: true
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type: "Reference"
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title: "Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)"
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description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `391e4713`, 2026-09-01, **vault HEAD unchanged** at the 2026-08-31T18:09Z fetch level for the 1st consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster, **0 new vault commits** in the 2026-08-31T18:09Z → 2026-09-01T18:07Z 24-hour window, **1 calendar day of vault silence** since the 2026-08-31 cluster (Yan + Stewart + Nguyen + Aiello + Miao all `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 20 → **21-day carry-forward** (18 → **19 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 15 → **16-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + **2026-09-01** fetches), `deepread_40240593/` 8 → **9-day carry-forward** (mtime unchanged across **8 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `0890fdb`, 2026-09-01, **2 new automated wiki commits in the 2026-08-31T18:09Z → 2026-09-01T18:07Z 24-hour window: `71f2da5` chore: daily update 2026-09-01 (2026-09-01T02:24 +0800; per `git show --stat 71f2da5` the commit touched 17 files including `.last-update.json` + `commitments.md` + `index.md` + `quickstart.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/03-ai-agents.md` + `themes/05-robin-research.md` + `themes/index.md`), then `0890fdb` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-01 — the **eighteenth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + `bd30339` 2026-08-20 + `f6c2576` 2026-08-21 + `43d4548` 2026-08-22 + `8f8f767` 2026-08-23 + `127c2dc` 2026-08-24 + `1003b92` 2026-08-25 + `ebb95c0` 2026-08-26 + `502281f` 2026-08-27 + `c992dd6` 2026-08-28 + `37d1ba6` 2026-08-29 + `d56da3a` 2026-08-30 + `9582dea` 2026-08-31 + now `0890fdb` 2026-09-01) committed `sources/{nocodb,ragflow,seafile,wikijs}.md` re-touched by the sources-sync; the very next synthesis edits from the HN-1 2026-09-01T18:00Z + web-search-1 2026-09-01 (skipped) + this git-repo-1 2026-09-01T18:07Z run re-touch the same files leaving the dirty count at **11 per the manifest `changedFiles` list** — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` + `M themes/03-ai-agents.md` — same shape as the 2026-08-31T18:09Z fetch because the `0890fdb` sources-sync re-touched the 4 source-sync files that the `71f2da5` daily update had cleared + the CLI metadata cycle re-touched the same files + `M themes.md` + `M themes/03-ai-agents.md` re-touched by the 2026-09-01 daily update metadata cycle**)**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
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description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD `391e4713`, 2026-09-02, **vault HEAD unchanged** at the 2026-08-31T18:09Z fetch level for the 2nd consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster, **0 new vault commits** in the 2026-09-01T18:07Z → 2026-09-02T18:16Z 24-hour window, **2 calendar days of vault silence** since the 2026-08-31 cluster (Yan + Stewart + Nguyen + Aiello + Miao all `obsidian-vault/04-Literature/Deep-Reads/CelVivo/`) remains the most recent committed vault activity); carry-forward untracked-file set bumps: `Review/zhou2023_computer_vision_microfluidics.md` 21 → **22-day carry-forward** (19 → **20 fetches silent**, stale carry-forward note per 2026-08-28 demotion), `celvivo_commercial/` + `templates/` 16 → **17-day carry-forward** (both confirmed one-off alongside `Review/` at the 2026-08-28 fetch, carrying forward unchanged at the 2026-08-29 + 2026-08-30 + 2026-08-31 + 2026-09-01 + **2026-09-02** fetches), `deepread_40240593/` 9 → **10-day carry-forward** (mtime unchanged across **9 consecutive silent fetches** since creation, working-folder pipeline hypothesis continuing to weaken); and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD `cedbb7fad6372437a6fad08a4dfa9c2bbcfbfd66`, 2026-09-02, **2 new automated wiki commits in the 2026-09-01T18:07Z → 2026-09-02T18:16Z 24-hour window: `c18d383` chore: daily update 2026-09-02 (2026-09-02T02:?? +0800; per `git show --stat c18d383` the commit touched 13 files including `.last-update.json` + `index.md` + `quickstart.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/03-ai-agents.md`), then `cedbb7f` chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-02 — the **nineteenth** consecutive sources-sync re-applying the 2026-08-15 count-data wipe pattern after `997b648` 2026-08-16 + `be49285` 2026-08-17 + `1fc73ae` 2026-08-18 + `dcb53a2` 2026-08-19 + `bd30339` 2026-08-20 + `f6c2576` 2026-08-21 + `43d4548` 2026-08-22 + `8f8f767` 2026-08-23 + `127c2dc` 2026-08-24 + `1003b92` 2026-08-25 + `ebb95c0` 2026-08-26 + `502281f` 2026-08-27 + `c992dd6` 2026-08-28 + `37d1ba6` 2026-08-29 + `d56da3a` 2026-08-30 + `9582dea` 2026-08-31 + `0890fdb` 2026-09-01 + now `cedbb7f` 2026-09-02) committed `sources/{nocodb,ragflow,seafile,wikijs}.md` re-touched by the sources-sync; the very next synthesis edits from the HN-1 2026-09-02T18:00Z + web-search-1 2026-09-02T18:10Z (skipped) + this git-repo-1 2026-09-02T18:16Z run re-touch the same files leaving the dirty count at **11 per the manifest `changedFiles` list** — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/README.md` + `M sources/hackernews.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md` — same shape as the 2026-09-01T18:07Z fetch because the `cedbb7f` sources-sync re-touched the 4 source-sync files that the `c18d383` daily update had cleared + the CLI metadata cycle re-touched the same files + `M themes.md` re-touched by the 2026-09-02 daily update metadata cycle)**. This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
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tags: [sources, git-repo, vault, wiki, manifest, 2026-09-02, 2026-09-01, 2026-08-31, vault-silent-2d, nineteenth-sources-sync, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-ten-silent-fetches]
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timestamp: 2026-09-02T18:16:00Z
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---
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# Git repo — evidence index
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This page is the **compact source-evidence index** for the local git-repo connector, which ingests Robin's Obsidian vault (`/home/ldw/workspace`) and the local OpenWiki wiki (`/home/ldw/.openwiki/wiki`). Each ingestion run writes a JSON manifest under `~/.openwiki/connectors/git-repo/raw/`.
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## Source config
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- Connector config path: `~/.openwiki/connectors/git-repo/config.json`
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- Two configured local repos:
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- `obsidian-vault` at `/home/ldw/workspace` (branch: `main`, HEAD `391e4713`, 2026-08-31 — 35 commits since 2026-08-03 fetch)
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- `openwiki-wiki` at `/home/ldw/.openwiki/wiki` (branch: `main`, HEAD `cedbb7f`, 2026-09-02)
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- Authentication: local path only — no remote, no credentials
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## Latest manifest
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- `~/.openwiki/connectors/git-repo/raw/2026-09-02T18-16-44-603Z/manifest.json` (generated 2026-09-02T18:16:44Z)
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- Vault HEAD: `391e47131679ce9edf0f525236e78ebb13e0d232` (unchanged since 2026-08-31T13:42 +0800)
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- Wiki HEAD: `cedbb7fad6372437a6fad08a4dfa9c2bbcfbfd66` (bumped from `0890fdb` at 2026-09-02)
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- **0 new vault commits** in the 24-hour window (vault silent for the 2nd consecutive fetch since the 2026-08-31 THIRD consecutive 5-paper CelVivo LDR cluster)
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- **2 new automated wiki commits** in the 24-hour window (`c18d383` daily update 2026-09-02 + `cedbb7f` sources-sync 2026-09-02 — the **nineteenth** consecutive sources-sync)
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- 11 uncommitted wiki files in working tree per the manifest `changedFiles` list
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## Carry-forward untracked directories
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| Directory / file | Carry-forward | Fetches silent | Status |
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| --- | ---: | ---: | --- |
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| `Review/zhou2023_computer_vision_microfluidics.md` | **22-day** | 20 | stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch) |
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| `celvivo_commercial/` | **17-day** | 16 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
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| `templates/` | **17-day** | 16 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
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| `deepread_40240593/` | **10-day** | 9 | working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 9 consecutive silent fetches since creation) |
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## Recent commits — vault (last 5)
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The most recent vault commits remain the 2026-08-31 THIRD consecutive single-day 5-paper CelVivo LDR burst (no new commits in the 24-hour window):
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1. `391e4713` 2026-08-31 — deep-read: Yan 2024 Cell Reports TMEM106B SARS-CoV-2 ACE2-independent brain organoids (CelVivo)
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2. `4fca0123` 2026-08-31 — deep-read: Miao 2025 Cell vascularized lung/gut organoids (CelVivo ClinoReactor)
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3. `fad7e21e` 2026-08-31 — deep-read: Nguyen 2024 npj Viruses JEV G4 2022 Australia brain organoids (CelVivo)
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4. `030f31ed` 2026-08-31 — deep-read: Aiello 2025 EMBO reports reproducible brain organoids (CelVivo ClinoReactor)
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5. `eb24ab72` 2026-08-31 — deep-read: Stewart 2023 Front Microbiol BA.5/XBB neurotropic brain organoids (CelVivo)
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## Recent commits — wiki (last 5)
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1. `cedbb7f` 2026-09-02 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-02, **nineteenth** consecutive sources-sync)
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2. `c18d383` 2026-09-02 — chore: daily update 2026-09-02 (13 files modified per `git show --stat c18d383`)
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3. `0890fdb` 2026-09-01 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-01, eighteenth consecutive sources-sync)
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4. `71f2da5` 2026-09-01 — chore: daily update 2026-09-01 (17 files modified per `git show --stat 71f2da5`)
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5. `9582dea` 2026-08-31 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-31, seventeenth consecutive sources-sync)
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## Synthesis-policy — this run
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- Vault delta: empty (no new commits, no new mtime changes).
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- Wiki delta: automated maintenance only.
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- Synthesis-layer impact: **none**. The themes / commitments / open-questions / personal-logistics pages are independent of the wiki-side automated maintenance commits.
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- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-02T18:16Z)" paragraph on `/quickstart.md` for the full delta list.
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## Previous run
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- 2026-09-01T18:07Z — vault HEAD unchanged at `391e4713`, 2 new wiki commits (`71f2da5` + `0890fdb`), 11-dirty-file baseline, the 4 carry-forward untracked directories bumped to 21/16/16/9-day carry-forward. See [`/themes/05-robin-research.md`](/themes/05-robin-research.md) + `/quickstart.md` for the full synthesis of that run.
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