chore: daily update 2026-08-11
This commit is contained in:
OpenWiki Bot
+127
-54
@@ -1,9 +1,9 @@
|
||||
---
|
||||
type: "Reference"
|
||||
title: "Git repo — evidence index (Obsidian vault, Robin)"
|
||||
description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD d7df3830, 2026-08-08) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD c94940c7, 2026-08-08). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
|
||||
description: "Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested through the local git-repo connector. Two configured repos: obsidian-vault at /home/ldw/workspace (main branch, HEAD d97b39ed, 2026-08-10) and openwiki-wiki at /home/ldw/.openwiki/wiki (main branch, HEAD 2bc03f3, 2026-08-09). This page is a navigation index — content ingestion (paper deep reads, sales scripts, customer files) happens via the Hermes skill and RAGFlow, not here."
|
||||
resource: "~/.openwiki/connectors/git-repo/config.json"
|
||||
tags: [git-repo, evidence, vault, openwiki-wiki, source]
|
||||
tags: [git-repo, evidence, vault, openwiki-wiki, source, 2026-08-10]
|
||||
---
|
||||
|
||||
# Git repo — evidence index (Obsidian vault + OpenWiki wiki)
|
||||
@@ -21,43 +21,49 @@ help locate things in the vault, not summarize their content.
|
||||
`~/.openwiki/connectors/git-repo/config.json`)
|
||||
- **Configured repos:**
|
||||
- `obsidian-vault` → `/home/ldw/workspace` (Robin Obsidian vault, on
|
||||
`main`, HEAD `d7df3830a28a48b0129a46729ab2357e231a2ec5` as of
|
||||
2026-08-08).
|
||||
`main`, HEAD `d97b39edb328b7e15d28de4a54a6d0bc2dd51274` as of
|
||||
2026-08-10).
|
||||
- `openwiki-wiki` → `/home/ldw/.openwiki/wiki` (the OpenWiki knowledge
|
||||
base itself, on `main`, HEAD `c94940c7d24bdf77680822a86c81355acff93ebf`
|
||||
as of 2026-08-08).
|
||||
base itself, on `main`, HEAD `2bc03f3ddb54e44d53dfed9366daeee109b82e87`
|
||||
as of 2026-08-09).
|
||||
- **Auth:** local paths only — no remote, no credentials.
|
||||
- **Latest fetch:** `2026-08-08T18:11:31Z` (raw manifest
|
||||
`~/.openwiki/connectors/git-repo/raw/2026-08-08T18-11-31-856Z/manifest.json`).
|
||||
- **Latest fetch:** `2026-08-10T18:06:19Z` (raw manifest
|
||||
`~/.openwiki/connectors/git-repo/raw/2026-08-10T18-06-18-966Z/manifest.json`).
|
||||
- **Source config:** `~/.openwiki/connectors/git-repo/config.json`
|
||||
- **State:** `~/.openwiki/connectors/git-repo/state.json` records
|
||||
`latestIds` per repo; the 2026-08-08 fetch bumped both `obsidian-vault`
|
||||
(from `2341383e` to `d7df3830`) and `openwiki-wiki` (from `45af5a4` /
|
||||
`9e80977` to `c94940c7`).
|
||||
`latestIds` per repo; the 2026-08-10 fetch bumped `obsidian-vault`
|
||||
from `d7df3830` (2026-08-08) to `d97b39ed` (2026-08-10, 3 new
|
||||
commits in the 24-hour window) and left `openwiki-wiki` at
|
||||
`2bc03f3` (2026-08-09, the sources-sync refresh recorded in the
|
||||
prior update).
|
||||
|
||||
## obsidian-vault — working-tree status (2026-08-08)
|
||||
## obsidian-vault — working-tree status (2026-08-10)
|
||||
|
||||
- **Branch:** `main`
|
||||
- **HEAD:** `d7df3830a28a48b0129a46729ab2357e231a2ec5` (obsidian-vault top
|
||||
of new remote / post-8-07 sweep)
|
||||
- **Ahead of origin/main:** 9 commits (the 2026-07-29 / 2026-07-28 cluster
|
||||
was extended by 4–5 new deep-read commits on 2026-08-07 / 2026-08-08).
|
||||
- **Dirty:** yes — 8 untracked 8-07 distributor/agent files + the
|
||||
literature-stage files Robin works on between commits.
|
||||
- **HEAD:** `d97b39edb328b7e15d28de4a54a6d0bc2dd51274` (vault HEAD after
|
||||
the **Phase A metadata batch + 2 sample runs** on 2026-08-10)
|
||||
- **Ahead of origin/main:** 12 commits (the 2026-08-08 baseline of 9
|
||||
commits was extended by the 2026-08-09 Wang 2024 Theranostics OrgOC
|
||||
entry `a14758b1` plus the 2026-08-10 Phase A metadata batch
|
||||
`d97b39ed` + the 2 sample runs `6b717aef` and `3b929c2f`).
|
||||
- **Dirty:** yes — same untracked file set as the 2026-08-08 fetch
|
||||
(8 `02-Clients/Agents/*2026-0807.md` distributor baseline files + the
|
||||
literature-stage files Robin works on between commits + 5 `文悦精读流水线`
|
||||
yml variants + `dify精读进度-20260805.md` + `rustdesk-selfhosted-2026-08-05.md`
|
||||
+ `literature_deepread_v6.py` etc.).
|
||||
- **Working-tree status (raw manifest, abbreviated):**
|
||||
|
||||
| Status | Path |
|
||||
| --- | --- |
|
||||
| `M` (committed 2026-08-08) | `obsidian-vault/04-Literature/Deep-Reads/Cells/fernandez-vallone-2026-thsdc-brain-organoids.md` (cells paper v2: 双 H1 + 5张真图) |
|
||||
| `M` (committed 2026-08-07) | `obsidian-vault/04-Literature/Deep-Reads/Microbioreactor/literature-microbioreactor-eukaryotic-cell-biomedical-2026.md` (fix v2 with SeaFile links) |
|
||||
| `??` (untracked) | `02-Clients/Agents/全国经销商地图-2026-0807.md` |
|
||||
| `??` (untracked) | `02-Clients/Agents/华北-2026-0807.md` |
|
||||
| `??` (untracked) | `02-Clients/Agents/华东-2026-0807.md` |
|
||||
| `??` (untracked) | `02-Clients/Agents/华南-2026-0807.md` |
|
||||
| `??` (untracked) | `02-Clients/Agents/山东-2026-0807.md` |
|
||||
| `??` (untracked) | `02-Clients/Agents/湖北-2026-0807.md` |
|
||||
| `??` (untracked) | `02-Clients/Agents/西北-2026-0807.md` |
|
||||
| `??` (untracked) | `02-Clients/Agents/西南-2026-0807.md` |
|
||||
| `M` (committed 2026-08-10) | `04-Literature/Deep-Reads/Organoid/2026-07-29_Organoids_disease_modeling_treatment_2026_review.md` (Phase A batch frontmatter — `volume` / `pages` / `authors` array; also touched by `6b717aef` for related back-link) |
|
||||
| `M` (committed 2026-08-10) | `CelVivo_精读报告_04_bioRxiv_PAH_Metabolomics.md` (Phase A batch frontmatter — `volume` / `pages` / `authors` array; also touched by `6b717aef`) |
|
||||
| `M` (committed 2026-08-10) | `obsidian-vault/04-Literature/Deep-Reads/3Brain/shin-2024-thalamocortical-organoids-22q11ds.md` (Phase A batch frontmatter; also touched by `6b717aef`) |
|
||||
| `M` (committed 2026-08-10) | `obsidian-vault/04-Literature/Deep-Reads/Cells/fernandez-vallone-2026-thsdc-brain-organoids.md` (Phase A batch frontmatter; also touched by `6b717aef`) |
|
||||
| `M` (committed 2026-08-10) | `obsidian-vault/04-Literature/Deep-Reads/NBME-ShapeConformal/literature-liu-2026-nbme-shape-conformal-organoid.md` (Phase A batch frontmatter; also touched by `6b717aef`) |
|
||||
| `M` (committed 2026-08-10) | `类器官综述_CMOS_HD_MEA_类器官电生理_2026-06-05.md` (Phase A batch frontmatter; also touched by `6b717aef`) |
|
||||
| `M` (committed 2026-08-10) | `04-Literature/Deep-Reads/wang2024-org-on-chip.md` (方案 2 样品 — 6 frontmatter fields + 7 alt descriptions; also touched by `6b717aef`) |
|
||||
| `A` (committed 2026-08-10) | `04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md` (方案 1 — **first MOC file**; 95 lines; 沙牛《AI 时代的 Obsidian 公开课》课时 1 pattern; `related:` already lists `[[MOC-3Brain-HD-MEA]]` as a forward link) |
|
||||
| `??` (untracked) | `02-Clients/Agents/全国经销商地图-2026-0807.md` + 7 区域 `*2026-0807.md` files (8-07 distributor baseline refresh — see below) |
|
||||
| `??` (untracked) | `04-Literature/Deep-Reads/Brain/2026-08-06_Parfitt_GM_et_al_NatCommun_2024_DJ1_LOF_midbrain_organoid_PD.md` |
|
||||
| `??` (untracked) | `Liu2026_NBME_shape_conformal_organoid.md` |
|
||||
| `??` (untracked) | `Miao2025_Cell_v2.md` |
|
||||
@@ -77,6 +83,10 @@ help locate things in the vault, not summarize their content.
|
||||
|
||||
| Date | Hash | Note |
|
||||
| --- | --- | --- |
|
||||
| 2026-08-10 | `d97b39ed` | **Phase A 批量：6 篇精读加 Front Matter 6 字段** (doi/journal/year/volume/pages/authors/pmid) — Organoids 2026 review + CelVivo PAH + Shin 2024 + Fernandez Vallone 2026 + Liu 2026 + 类器官综述_CMOS_HD_MEA |
|
||||
| 2026-08-10 | `3b929c2f` | **wang2024 方案 2 样品：6 个 Front Matter 字段 + 7 张图加 alt 描述** — `wang2024-org-on-chip.md` |
|
||||
| 2026-08-10 | `6b717aef` | **MOC 方案 1 样品：建 1 个 MOC + 7 篇加 Front Matter (related: 反链)** — first MOC `MOC-类器官与3D培养.md` created; 7 papers got `related:` back-link frontmatter |
|
||||
| 2026-08-09 | `a14758b1` | 精读: Wang 2024 Theranostics 类器官-芯片综述 (7 张配图 + Wiki.js ID 1700) — first Organoid-on-Chip 综述 / 7 大主题板块 |
|
||||
| 2026-08-08 | `d7df3830` | cells paper v2: 双 H1 + 5张真图 (xref) — Fernandez Vallone 2026 |
|
||||
| 2026-08-08 | `6c16dc05` | 精读: Fernandez Vallone 2026 Cells hiPSC 脑类器官 THSDC |
|
||||
| 2026-08-07 | `65fef021` | fix: v2 with SeaFile links — Microbioreactor 2026 |
|
||||
@@ -98,31 +108,54 @@ help locate things in the vault, not summarize their content.
|
||||
| 2026-07-28 | `2718e46d` | feat(literature): Parate 2020 SCRT — PEMF 增强 MSC 旁分泌功能促软骨再生 |
|
||||
| 2026-07-28 | `032de92f` | feat: 精读 Lee 2025 Front Vet Sci 犬脂肪源 MSC 3D 球体 |
|
||||
|
||||
The **2026-08-08 cluster** is the literature flywheel-sync output (Liu
|
||||
2026, Miao 2025 v2, Sharma 2026) — already indexed on
|
||||
[`/sources/literature.md`](/sources/literature.md). The
|
||||
The **2026-08-10 cluster** is a **frontmatter-hygiene + MOC-discipline
|
||||
sprint** rather than new external evidence: (a) **Phase A batch**
|
||||
(`d97b39ed`) standardized 6 deep-read notes with the structured 6-field
|
||||
frontmatter (doi / journal / year / **volume** / **pages** /
|
||||
**authors** array / pmid) that the prior notes had been missing; (b)
|
||||
**方案 2 样品** (`3b929c2f`) added 7 image alt descriptions on top of the
|
||||
6-field frontmatter for `wang2024-org-on-chip.md`; (c) **MOC 方案 1
|
||||
样品** (`6b717aef`) created Robin's first Map-of-Content file
|
||||
(`04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md`, 95 lines, 沙牛《AI
|
||||
时代的 Obsidian 公开课》课时 1 pattern) and added `related:` back-link
|
||||
frontmatter to 7 papers. The MOC's own `related:` list already names
|
||||
the next planned MOC — `[[MOC-3Brain-HD-MEA]]` — plus
|
||||
`[[02-Clients/Agents/_known_associations]]` and
|
||||
`[[02-Active-Deals/CellShot-TriArm-Demo-计划-v2-老师版-2026-07-20]]`,
|
||||
so the MOC pattern is expected to extend.
|
||||
|
||||
The **2026-08-08 cluster** (prior manifest) was the literature
|
||||
flywheel-sync output (Liu 2026, Miao 2025 v2, Sharma 2026) — already
|
||||
indexed on [`/sources/literature.md`](/sources/literature.md). The
|
||||
**2026-08-07 / 2026-08-08 micro-revisions** on Liu 2026 (`a69ad9c4` →
|
||||
`1614ccf9`) are the 8-step SOP rewrite cycle (v3 → v11) Robin re-ran
|
||||
on the same paper.
|
||||
|
||||
## openwiki-wiki — working-tree status (2026-08-08)
|
||||
## openwiki-wiki — working-tree status (2026-08-10)
|
||||
|
||||
- **Branch:** `main`
|
||||
- **HEAD:** `c94940c7d24bdf77680822a86c81355acff93ebf` (the
|
||||
`feat: add Microbioreactor 2026 v4` update commit for the
|
||||
literature index)
|
||||
- **Working-tree state:** 17 staged-but-not-yet-committed file changes
|
||||
(this OpenWiki run's own edits, plus 3 new literature deep-read
|
||||
synthesis pages from the 2026-08-08 flywheel-sync:
|
||||
`sources/literature-liu-2026-nbme-shape-conformal-organoid-deepread.md`,
|
||||
`sources/literature-miao-2025-cell-vascularization-v2-deepread.md`,
|
||||
`sources/literature-sharma-2026-cell-stem-cell-vascularized-retinal-organoid-rgc-deepread.md`).
|
||||
- **HEAD:** `2bc03f3ddb54e44d53dfed9366daeee109b82e87` (the
|
||||
`chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts
|
||||
(sources-sync 2026-08-10)` commit recorded during the prior
|
||||
2026-08-10 update — no new wiki-side commits landed in the 24-hour
|
||||
window since then).
|
||||
- **Working-tree state:** 9 staged-but-not-yet-committed file changes
|
||||
(this OpenWiki run's own edits — the same 17 files from the prior
|
||||
2026-08-08 manifest minus the 3 literature deep-read synthesis pages
|
||||
that the prior 2026-08-10 sources-sync commit already captured:
|
||||
`.last-update.json` + `quickstart.md` + `sources/README.md` +
|
||||
`sources/hackernews.md` + `sources/nocodb.md` + `sources/ragflow.md` +
|
||||
`sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md`).
|
||||
- **Auth:** local path only — no remote, no credentials.
|
||||
|
||||
### Recent commits (latest first)
|
||||
|
||||
| Date | Hash | Note |
|
||||
| --- | --- | --- |
|
||||
| 2026-08-10 | `2bc03f3` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-10) |
|
||||
| 2026-08-09 | `dde053a` | auto: 2026-08-09 Wang 2024 Theranostics OrgOC 综述精读入口 |
|
||||
| 2026-08-09 | `3267338` | chore: daily update 2026-08-09 |
|
||||
| 2026-08-09 | `06f60e1` | chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-08-09) |
|
||||
| 2026-08-08 | `c94940c7` | feat: add Microbioreactor 2026 v4 (PMID 42516424, ID 1696) |
|
||||
| 2026-08-08 | `7f65024` | feat: add Microbioreactor 2026 v3 (PMID 42516424) |
|
||||
| 2026-08-08 | `ea4f14a` | feat: add Microbioreactor 2026 v2 (PMID 42516424) |
|
||||
@@ -145,10 +178,10 @@ on the same paper.
|
||||
| 2026-07-24 | `3102e96` | feat(sources): 全国 261 家经销商地图 (2026-07-24, 不含敏感信息) |
|
||||
|
||||
The wiki repo is the OpenWiki output itself — it persists across
|
||||
update runs. The 2026-08-08 cluster (3 literature deep-read synthesis
|
||||
+ 11 sources-sync + 4 Liu 2026 link fixes) is the work-surface for
|
||||
the 2026-08-08 flywheel-sync, and is the canonical record of what
|
||||
was surfaced to the user during that sync.
|
||||
update runs. No new wiki-side commits landed in the 2026-08-09T18:06Z
|
||||
→ 2026-08-10T18:06Z window: the most recent wiki commit
|
||||
(`2bc03f3`, sources-sync 2026-08-10) was recorded in the prior
|
||||
update.
|
||||
|
||||
## Vault navigation index
|
||||
|
||||
@@ -319,18 +352,50 @@ fields still 待补).
|
||||
- **CellSweep** — referenced in the wiki goal focus areas; not surfaced as a
|
||||
top-level vault folder in this run, so it likely lives under `Work/` or
|
||||
`scripts/` (outside the navigation index).
|
||||
- **Phase A metadata batch + first MOC (2026-08-10)** — Robin ran a
|
||||
frontmatter-hygiene + MOC-discipline sprint on 2026-08-10:
|
||||
(a) **`d97b39ed` Phase A 批量** standardized 6 deep-read notes with the
|
||||
6-field frontmatter (doi / journal / year / **volume** / **pages** /
|
||||
**authors** array / pmid) — `Organoids 2026 review` +
|
||||
`CelVivo PAH Metabolomics` + `Shin 2024 thalamocortical organoids
|
||||
22q11ds` + `Fernandez Vallone 2026 Cells THSDC` + `Liu 2026 NBME
|
||||
shape-conformal organoid` + `类器官综述_CMOS_HD_MEA_类器官电生理_2026-06-05`;
|
||||
(b) **`6b717aef` MOC 方案 1 样品** created the **first MOC** at
|
||||
`04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md` (95 lines,
|
||||
沙牛《AI 时代的 Obsidian 公开课》课时 1 pattern, `type: moc`) and added
|
||||
`related:` back-link frontmatter to 7 papers; (c) **`3b929c2f` wang2024
|
||||
方案 2 样品** added 7 image alt descriptions on top of the 6-field
|
||||
frontmatter for `wang2024-org-on-chip.md`. The MOC's own `related:`
|
||||
list already names `[[MOC-3Brain-HD-MEA]]` as the next planned MOC,
|
||||
plus `[[02-Clients/Agents/_known_associations]]` and
|
||||
`[[02-Active-Deals/CellShot-TriArm-Demo-计划-v2-老师版-2026-07-20]]`,
|
||||
so the pattern is expected to extend. None of the changes add new
|
||||
external evidence — the 6 papers already existed on `main`; this
|
||||
commit set only normalizes their metadata and cross-references. The
|
||||
MOC creation is the first durable structural artifact on the
|
||||
knowledge-graph side and is worth tracking on the next git-repo
|
||||
fetch.
|
||||
|
||||
## Synthesis policy for this source
|
||||
|
||||
- **This run (2026-08-08):** 1 new entry surfaced to `/commitments.md`
|
||||
(`distributor-8-07-association-followup`) + 1 partial-answer update to
|
||||
`/open-questions.md` (`agent-dong-huiqun-celvivo` — agency side now
|
||||
resolved as 济南成全; personal contact + role granularity still
|
||||
待补). The `/themes/05-robin-research.md` truth-of-vault snapshot
|
||||
moves to the new HEAD `d7df3830` and the 2026-08-07 distributor map
|
||||
baseline. The `/sources/distributors-china-2026.md` page absorbs the
|
||||
259-dealer 8-07 baseline (replacing the 261-dealer 7-24 baseline
|
||||
numbers) and the new `_known_associations.md` index.
|
||||
- **This run (2026-08-10):** 3 new vault commits landed in the 24-hour
|
||||
window (Phase A metadata batch + 2 sample runs) — these are
|
||||
**frontmatter-hygiene + MOC-discipline**, not new external evidence.
|
||||
No `/commitments.md`, `/open-questions.md`, `/personal-logistics.md`,
|
||||
or `/themes.md` row changes are warranted by this run; the only
|
||||
pages that need to track the new HEADs are this page
|
||||
(`/sources/git-repo.md`), `/themes/05-robin-research.md` (vault HEAD
|
||||
pointer), and `/quickstart.md` (current-status paragraph). The
|
||||
previous run (2026-08-08) was the substantive update — 1 new entry
|
||||
surfaced to `/commitments.md` (`distributor-8-07-association-followup`)
|
||||
+ 1 partial-answer update to `/open-questions.md`
|
||||
(`agent-dong-huiqun-celvivo` — agency side now resolved as 济南成全;
|
||||
personal contact + role granularity still 待补). The
|
||||
`/themes/05-robin-research.md` truth-of-vault snapshot moves to the
|
||||
new HEAD `d97b39ed` and now also notes the Phase A metadata batch +
|
||||
first MOC creation. The `/sources/distributors-china-2026.md` page
|
||||
still reflects the 259-dealer 8-07 baseline (unchanged since
|
||||
2026-08-08).
|
||||
- The vault is a knowledge base, not a live signal stream; durable
|
||||
per-document synthesis (paper deep reads, sales scripts, customer
|
||||
files) requires reading individual files, which is delegated to the
|
||||
@@ -339,6 +404,14 @@ fields still 待补).
|
||||
theme only when the connector observes a recurring workflow (e.g. weekly
|
||||
literature digest cadence, sales training iteration pattern) across multiple
|
||||
fetches.
|
||||
- **Process signal worth watching (2026-08-10):** Robin started a
|
||||
MOC-discipline sprint — first MOC
|
||||
(`04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md`) created with a
|
||||
forward link to `[[MOC-3Brain-HD-MEA]]`. Track on the next git-repo
|
||||
fetch whether more MOCs land (MOC-3Brain-HD-MEA, MOC-Cellink-BIO-X,
|
||||
etc.) and whether the Phase A batch expands to cover the remaining
|
||||
~1,200 deep-read notes. If the MOC pattern extends to ≥3 MOCs, it
|
||||
may warrant a `/themes.md` annex row on `vault-knowledge-architecture`.
|
||||
|
||||
## Next update
|
||||
|
||||
|
||||
Reference in New Issue
Block a user