chore: daily update 2026-09-30
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@@ -3,33 +3,35 @@ type: "Reference"
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title: "Git repo — evidence index (Obsidian vault + OpenWiki wiki, Robin)"
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description: >
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Compact manifest of Robin's Obsidian vault + the local OpenWiki wiki, ingested
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through the local git-repo connector. **Latest fetch (2026-09-28T18:09Z — 44th
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through the local git-repo connector. **Latest fetch (2026-09-29T18:14Z — 45th
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git-repo-1 fetch since 2026-08-07): vault HEAD unchanged at `09bec367` for the
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17th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption; wiki
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HEAD bumped `057a35ef` → `6bafbff` via 2 new automated wiki commits (`53fd10c`
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daily update 2026-09-28 + `6bafbff` sources-sync 2026-09-28 — the **forty-fifth**
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18th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption; wiki
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HEAD bumped `6bafbff` → `2fccbf0` via 2 new automated wiki commits (`92874d2`
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daily update 2026-09-29 + `2fccbf0` sources-sync 2026-09-29 — the **forty-sixth**
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consecutive sources-sync); 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md`
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(mtime 2026-09-13 11:55:42 +0800 — persists uncommitted for 15 calendar days at
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this fetch); 12-dirty-file baseline (same count as the 2026-09-27T18:19Z fetch —
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the `53fd10c` daily update cycle cleared `sources/openwiki-version-drift.md` from
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the dirty list; the `6bafbff` sources-sync re-touched the 4 source-sync files
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(`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`);
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the post-sources-sync synthesis-side write path re-touched `index.md` + `quickstart.md`
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+ `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/web-search.md`
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+ `themes.md`; net: 0 vs the 12-dirty baseline; composition shift: lost
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`sources/openwiki-version-drift.md`, gained `themes.md`);
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carry-forward bump 46/41/41/34 → **47/42/42/35-day** (highest carry-forward
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(mtime 2026-09-13 11:55:42 +0800 — persists uncommitted for 16 calendar days at
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this fetch); 13-dirty-file baseline (vs the 12-dirty baseline at the 2026-09-28T18:09Z
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fetch — the `92874d2` daily update cycle cleared `themes.md` from the dirty list;
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the `2fccbf0` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md`
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+ `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the
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post-sources-sync synthesis-side write path re-touched `index.md` + `quickstart.md`
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+ `sources/README.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md`
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+ `sources/web-search.md` + `themes.md`; the `92874d2` daily update also deleted
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`tmp/check_themes.py` (now in the dirty list as `D tmp/check_themes.py`); net: +1
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vs the 12-dirty baseline; composition shift: lost `themes.md`, gained
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`sources/README.md` + `D tmp/check_themes.py`);
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carry-forward bump 47/42/42/35 → **48/43/43/36-day** (highest carry-forward
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durations of the 2026-08-07 streak).** Two configured repos: obsidian-vault at
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/home/ldw/workspace (main branch, HEAD `09bec367`, 2026-09-11, vault HEAD unchanged
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at `09bec367` for the 17th consecutive fetch after the Tomas 2026 + Vijakumaran
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2026 resumption; the MOC working-tree modification persists uncommitted for 15 calendar
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at `09bec367` for the 18th consecutive fetch after the Tomas 2026 + Vijakumaran
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2026 resumption; the MOC working-tree modification persists uncommitted for 16 calendar
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days at this fetch); and openwiki-wiki at /home/ldw/.openwiki/wiki (main
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branch, HEAD `6bafbff`, 2026-09-28, bumped from `057a35ef` via 2 automated commits
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in the 24-hour window — `53fd10c` daily update + `6bafbff` sources-sync forty-fifth).
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branch, HEAD `2fccbf0`, 2026-09-29, bumped from `6bafbff` via 2 automated commits
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in the 24-hour window — `92874d2` daily update + `2fccbf0` sources-sync forty-sixth).
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This page is a navigation index — content ingestion (paper deep reads, sales
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scripts, customer files) happens via the Hermes skill and RAGFlow, not here.
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tags: [sources, git-repo, vault, wiki, manifest, 2026-09-28, 2026-09-27, 2026-09-26, 2026-09-25, 2026-09-24, 2026-09-23, 2026-09-22, 2026-09-21, 2026-09-20, 2026-09-19, 2026-09-18, 2026-09-17, 2026-09-16, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, vault-silence-broken, vault-resumed-after-11d, twenty-seventh-sources-sync, twenty-eighth-sources-sync, twenty-ninth-sources-sync, thirtieth-sources-sync, thirty-first-sources-sync, thirty-second-sources-sync, thirty-third-sources-sync, thirty-fourth-sources-sync, thirty-fifth-sources-sync, thirty-sixth-sources-sync, thirty-seventh-sources-sync, thirty-eighth-sources-sync, thirty-ninth-sources-sync, fortieth-sources-sync, forty-first-sources-sync, forty-second-sources-sync, forty-third-sources-sync, forty-fourth-sources-sync, forty-fifth-sources-sync, forty-fifth-sources-sync-2026-09-28, thirty-second-git-repo-fetch, thirty-third-git-repo-fetch, thirty-fourth-git-repo-fetch, thirty-fifth-git-repo-fetch, thirty-sixth-git-repo-fetch, thirty-seventh-git-repo-fetch, thirty-eighth-git-repo-fetch, thirty-ninth-git-repo-fetch, fortieth-git-repo-fetch, forty-first-git-repo-fetch, forty-second-git-repo-fetch, forty-third-git-repo-fetch, forty-fourth-git-repo-fetch, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, wiki-2-new-commits, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-twenty-three-silent-fetches, deepread-40240593-twenty-four-silent-fetches, deepread-40240593-twenty-five-silent-fetches, deepread-40240593-twenty-six-silent-fetches, deepread-40240593-twenty-seven-silent-fetches, deepread-40240593-twenty-eight-silent-fetches, deepread-40240593-twenty-nine-silent-fetches, deepread-40240593-thirty-silent-fetches, deepread-40240593-thirty-one-silent-fetches, deepread-40240593-thirty-two-silent-fetches, deepread-40240593-thirty-three-silent-fetches, deepread-40240593-thirty-four-silent-fetches, deepread-40240593-thirty-five-silent-fetches, vault-silent-5d, vault-silent-6d, vault-silent-7d, vault-silent-8d, vault-silent-9d, vault-silent-10d, vault-silent-11d, vault-silent-12d, vault-silent-13d, vault-silent-14d, vault-silent-15d, vault-silent-16d, vault-silent-17d, moc-organoid-3d-culture-uncommitted-edit-4d, moc-organoid-3d-culture-uncommitted-edit-5d, moc-organoid-3d-culture-uncommitted-edit-6d, moc-organoid-3d-culture-uncommitted-edit-7d, moc-organoid-3d-culture-uncommitted-edit-8d, moc-organoid-3d-culture-uncommitted-edit-9d, moc-organoid-3d-culture-uncommitted-edit-10d, moc-organoid-3d-culture-uncommitted-edit-11d, moc-organoid-3d-culture-uncommitted-edit-12d, moc-organoid-3d-culture-uncommitted-edit-13d, moc-organoid-3d-culture-uncommitted-edit-14d, moc-organoid-3d-culture-uncommitted-edit-15d, vault-working-tree-moc-modification-2026-09-13-persists, vault-silent-8d-consecutive-fetch, vault-silent-9d-consecutive-fetch, vault-silent-10d-consecutive-fetch, vault-silent-11d-consecutive-fetch, vault-silent-12d-consecutive-fetch, vault-silent-13d-consecutive-fetch, vault-silent-14d-consecutive-fetch, vault-silent-15d-consecutive-fetch, vault-silent-16d-consecutive-fetch, vault-silent-17d-consecutive-fetch, thirty-fourth-git-repo-fetch-34th, thirty-fifth-git-repo-fetch-35th, thirty-sixth-git-repo-fetch-36th, thirty-seventh-git-repo-fetch-37th, thirty-eighth-git-repo-fetch-38th, thirty-ninth-git-repo-fetch-39th, fortieth-git-repo-fetch-40th, forty-first-git-repo-fetch-41st, forty-second-git-repo-fetch-42nd, forty-third-git-repo-fetch-43rd, forty-fourth-git-repo-fetch-44th, thirty-sixth-sources-sync-2026-09-19, thirty-seventh-sources-sync-2026-09-20, thirty-eighth-sources-sync-2026-09-21, thirty-ninth-sources-sync-2026-09-22, fortieth-sources-sync-2026-09-23, forty-first-sources-sync-2026-09-24, forty-second-sources-sync-2026-09-25, forty-third-sources-sync-2026-09-26, forty-fourth-sources-sync-2026-09-27, dirty-12-files-baseline-2026-09-24, dirty-11-files-baseline-2026-09-25, dirty-11-files-baseline-2026-09-26, dirty-12-files-baseline-2026-09-27, dirty-12-files-baseline-2026-09-28, dirty-10-files-baseline-2026-09-23, dirty-8-files-baseline-2026-09-22, robin-8-07-added-untracked-regional-agent-files]
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timestamp: 2026-09-28T18:09:00Z
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tags: [sources, git-repo, vault, wiki, manifest, 2026-09-29, 2026-09-28, 2026-09-27, 2026-09-26, 2026-09-25, 2026-09-24, 2026-09-23, 2026-09-22, 2026-09-21, 2026-09-20, 2026-09-19, 2026-09-18, 2026-09-17, 2026-09-16, 2026-09-11, 2026-09-10, 2026-09-09, 2026-09-08, 2026-09-07, 2026-09-06, 2026-09-05, 2026-09-04, 2026-09-03, 2026-09-02, 2026-09-01, 2026-08-31, vault-silence-broken, vault-resumed-after-11d, twenty-seventh-sources-sync, twenty-eighth-sources-sync, twenty-ninth-sources-sync, thirtieth-sources-sync, thirty-first-sources-sync, thirty-second-sources-sync, thirty-third-sources-sync, thirty-fourth-sources-sync, thirty-fifth-sources-sync, thirty-sixth-sources-sync, thirty-seventh-sources-sync, thirty-eighth-sources-sync, thirty-ninth-sources-sync, fortieth-sources-sync, forty-first-sources-sync, forty-second-sources-sync, forty-third-sources-sync, forty-fourth-sources-sync, forty-fifth-sources-sync, forty-fifth-sources-sync-2026-09-28, thirty-second-git-repo-fetch, thirty-third-git-repo-fetch, thirty-fourth-git-repo-fetch, thirty-fifth-git-repo-fetch, thirty-sixth-git-repo-fetch, thirty-seventh-git-repo-fetch, thirty-eighth-git-repo-fetch, thirty-ninth-git-repo-fetch, fortieth-git-repo-fetch, forty-first-git-repo-fetch, forty-second-git-repo-fetch, forty-third-git-repo-fetch, forty-fourth-git-repo-fetch, forty-fifth-git-repo-fetch-45th, forty-sixth-sources-sync-2026-09-29, tomas-2026-hgsoc-parpi-spheroid-organoid, vijakumaran-2026-brain-organoid-ali-oxygen-engineering, flywheel-v4-auto-sink, wiki-2-new-commits, review-templates-celvivo-commercial-confirmed-one-off, deepread-40240593-twenty-three-silent-fetches, deepread-40240593-twenty-four-silent-fetches, deepread-40240593-twenty-five-silent-fetches, deepread-40240593-twenty-six-silent-fetches, deepread-40240593-twenty-seven-silent-fetches, deepread-40240593-twenty-eight-silent-fetches, deepread-40240593-twenty-nine-silent-fetches, deepread-40240593-thirty-silent-fetches, deepread-40240593-thirty-one-silent-fetches, deepread-40240593-thirty-two-silent-fetches, deepread-40240593-thirty-three-silent-fetches, deepread-40240593-thirty-four-silent-fetches, deepread-40240593-thirty-five-silent-fetches, deepread-40240593-thirty-six-silent-fetches, vault-silent-5d, vault-silent-6d, vault-silent-7d, vault-silent-8d, vault-silent-9d, vault-silent-10d, vault-silent-11d, vault-silent-12d, vault-silent-13d, vault-silent-14d, vault-silent-15d, vault-silent-16d, vault-silent-17d, vault-silent-18d, moc-organoid-3d-culture-uncommitted-edit-4d, moc-organoid-3d-culture-uncommitted-edit-5d, moc-organoid-3d-culture-uncommitted-edit-6d, moc-organoid-3d-culture-uncommitted-edit-7d, moc-organoid-3d-culture-uncommitted-edit-8d, moc-organoid-3d-culture-uncommitted-edit-9d, moc-organoid-3d-culture-uncommitted-edit-10d, moc-organoid-3d-culture-uncommitted-edit-11d, moc-organoid-3d-culture-uncommitted-edit-12d, moc-organoid-3d-culture-uncommitted-edit-13d, moc-organoid-3d-culture-uncommitted-edit-14d, moc-organoid-3d-culture-uncommitted-edit-15d, moc-organoid-3d-culture-uncommitted-edit-16d, vault-working-tree-moc-modification-2026-09-13-persists, vault-silent-8d-consecutive-fetch, vault-silent-9d-consecutive-fetch, vault-silent-10d-consecutive-fetch, vault-silent-11d-consecutive-fetch, vault-silent-12d-consecutive-fetch, vault-silent-13d-consecutive-fetch, vault-silent-14d-consecutive-fetch, vault-silent-15d-consecutive-fetch, vault-silent-16d-consecutive-fetch, vault-silent-17d-consecutive-fetch, vault-silent-18d-consecutive-fetch, thirty-fourth-git-repo-fetch-34th, thirty-fifth-git-repo-fetch-35th, thirty-sixth-git-repo-fetch-36th, thirty-seventh-git-repo-fetch-37th, thirty-eighth-git-repo-fetch-38th, thirty-ninth-git-repo-fetch-39th, fortieth-git-repo-fetch-40th, forty-first-git-repo-fetch-41st, forty-second-git-repo-fetch-42nd, forty-third-git-repo-fetch-43rd, forty-fourth-git-repo-fetch-44th, thirty-sixth-sources-sync-2026-09-19, thirty-seventh-sources-sync-2026-09-20, thirty-eighth-sources-sync-2026-09-21, thirty-ninth-sources-sync-2026-09-22, fortieth-sources-sync-2026-09-23, forty-first-sources-sync-2026-09-24, forty-second-sources-sync-2026-09-25, forty-third-sources-sync-2026-09-26, forty-fourth-sources-sync-2026-09-27, dirty-12-files-baseline-2026-09-24, dirty-11-files-baseline-2026-09-25, dirty-11-files-baseline-2026-09-26, dirty-12-files-baseline-2026-09-27, dirty-12-files-baseline-2026-09-28, dirty-13-files-baseline-2026-09-29, dirty-10-files-baseline-2026-09-23, dirty-8-files-baseline-2026-09-22, robin-8-07-added-untracked-regional-agent-files]
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timestamp: 2026-09-29T18:14:00Z
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---
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# Git repo — evidence index
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@@ -40,28 +42,28 @@ This page is the **compact source-evidence index** for the local git-repo connec
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- Connector config path: `~/.openwiki/connectors/git-repo/config.json`
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- Two configured local repos:
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- `obsidian-vault` at `/home/ldw/workspace` (branch: `main`, HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff`, 2026-09-11 — **37 commits since 2026-08-03 fetch**, +2 since 2026-09-09T18:11Z fetch; vault HEAD unchanged for the 17th consecutive git-repo-1 fetch since the 2026-09-11T18:14Z resumption)
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- `openwiki-wiki` at `/home/ldw/.openwiki/wiki` (branch: `main`, HEAD `6bafbff15a35eb51cd394daf8495afc2b95837a4`, 2026-09-28 — bumped from `057a35efeea2c41ed3a64036c5d733e6aac6e97b` via 2 automated commits in the 24-hour window)
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- `obsidian-vault` at `/home/ldw/workspace` (branch: `main`, HEAD `09bec36702cdbd8ef1d2644919ca337248ae6bff`, 2026-09-11 — **37 commits since 2026-08-03 fetch**, +2 since 2026-09-09T18:11Z fetch; vault HEAD unchanged for the 18th consecutive git-repo-1 fetch since the 2026-09-11T18:14Z resumption)
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- `openwiki-wiki` at `/home/ldw/.openwiki/wiki` (branch: `main`, HEAD `2fccbf0176a39461576367410e3d459287350799`, 2026-09-29 — bumped from `6bafbff15a35eb51cd394daf8495afc2b95837a4` via 2 automated commits in the 24-hour window)
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- Authentication: local path only — no remote, no credentials
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## Latest manifest
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- `~/.openwiki/connectors/git-repo/raw/2026-09-28T18-09-29-651Z/manifest.json` (generated 2026-09-28T18:09Z — **44th git-repo-1 fetch since 2026-08-07**)
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- Vault HEAD: `09bec36702cdbd8ef1d2644919ca337248ae6bff` (**unchanged at `09bec367` for the 17th consecutive fetch** after the 2026-09-11T18:14Z bump from `391e4713`; **17 calendar days of vault silence** since the 2026-09-11 resumption)
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- Wiki HEAD: `6bafbff15a35eb51cd394daf8495afc2b95837a4` (bumped from `057a35efeea2c41ed3a64036c5d733e6aac6e97b` via 2 automated commits in the 24-hour window)
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- **0 new vault commits** in the 24-hour window + **1 working-tree modification** at `M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"` (mtime 2026-09-13 11:55:42 +0800; Robin actively editing MOC index file but has not yet committed — the modification now persists uncommitted for **15 calendar days** at this fetch)
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- **2 new automated wiki commits** in the 24-hour window (`6bafbff` sources-sync 2026-09-28 — the **forty-fifth** consecutive sources-sync — + `53fd10c` daily update 2026-09-28)
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- **12 uncommitted wiki files** in working tree per the manifest `changedFiles` list (same count as the 2026-09-27T18:19Z fetch; composition shift: lost `sources/openwiki-version-drift.md`, gained `themes.md` — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/literature.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `M themes.md`; the `53fd10c` daily update cycle cleared `sources/openwiki-version-drift.md` from the dirty list (it had been carrying across multiple fetches); the `6bafbff` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the post-sources-sync synthesis-side write path re-touched `index.md` + `quickstart.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/web-search.md` + `themes.md`; the CLI metadata cycle re-touched `.last-update.json`; net: 0 vs the 12-dirty baseline because the daily update cleared `sources/openwiki-version-drift.md` while the sources-sync + post-commit write path re-touched `themes.md` that the daily update had committed; the post-commit `status` output also shows `?? home/index.md` + `?? home/ldw/index.md` + `?? home/ldw/replace_quickstart_prior.py` + `?? tmp/replace_quickstart_prior.py` as new untracked entries but the manifest `changedFiles` array excludes untracked entries so the modified-file count stays at 12)
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- **Carry-forward untracked-file bumps**: `Review/zhou2023_computer_vision_microfluidics.md` 46 → **47-day** (45 → **46 fetches silent**), `celvivo_commercial/` + `templates/` 41 → **42-day**, `deepread_40240593/` 34 → **35-day** (mtime unchanged across **34 consecutive silent fetches** since creation)
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- `~/.openwiki/connectors/git-repo/raw/2026-09-29T18-14-49-934Z/manifest.json` (generated 2026-09-29T18:14Z — **45th git-repo-1 fetch since 2026-08-07**)
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- Vault HEAD: `09bec36702cdbd8ef1d2644919ca337248ae6bff` (**unchanged at `09bec367` for the 18th consecutive fetch** after the 2026-09-11T18:14Z bump from `391e4713`; **18 calendar days of vault silence** since the 2026-09-11 resumption)
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- Wiki HEAD: `2fccbf0176a39461576367410e3d459287350799` (bumped from `6bafbff15a35eb51cd394daf8495afc2b95837a4` via 2 automated commits in the 24-hour window)
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- **0 new vault commits** in the 24-hour window + **1 working-tree modification** at `M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"` (mtime 2026-09-13 11:55:42 +0800; Robin actively editing MOC index file but has not yet committed — the modification now persists uncommitted for **16 calendar days** at this fetch)
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- **2 new automated wiki commits** in the 24-hour window (`2fccbf0` sources-sync 2026-09-29 — the **forty-sixth** consecutive sources-sync — + `92874d2` daily update 2026-09-29)
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- **13 uncommitted wiki files** in working tree per the manifest `changedFiles` list (vs the 12-dirty baseline at the 2026-09-28T18:09Z fetch; composition shift: lost `themes.md`, gained `sources/README.md` + `D tmp/check_themes.py` — `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/README.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/literature.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `D tmp/check_themes.py`; the `92874d2` daily update cycle cleared `themes.md` from the dirty list (it had been carrying across multiple fetches); the daily update also deleted `tmp/check_themes.py` (the deletion is in the manifest `changedFiles` list as `D tmp/check_themes.py`); the `2fccbf0` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the post-sources-sync synthesis-side write path re-touched `index.md` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/web-search.md`; the CLI metadata cycle re-touched `.last-update.json`; net: +1 vs the 12-dirty baseline because the daily update cleared `themes.md` while the sources-sync + post-commit write path re-touched `sources/README.md` + `sources/literature.md` that the daily update had not re-touched and the `tmp/check_themes.py` deletion remained in the dirty list)
|
||||
- **Carry-forward untracked-file bumps**: `Review/zhou2023_computer_vision_microfluidics.md` 47 → **48-day** (46 → **47 fetches silent**), `celvivo_commercial/` + `templates/` 42 → **43-day**, `deepread_40240593/` 35 → **36-day** (mtime unchanged across **35 consecutive silent fetches** since creation)
|
||||
|
||||
## Carry-forward untracked directories
|
||||
|
||||
| Directory / file | Carry-forward | Fetches silent | Status |
|
||||
| --- | ---: | ---: | --- |
|
||||
| `Review/zhou2023_computer_vision_microfluidics.md` | **47-day** | 46 | stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch) |
|
||||
| `celvivo_commercial/` | **42-day** | 43 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
|
||||
| `templates/` | **42-day** | 43 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
|
||||
| `deepread_40240593/` | **35-day** | 34 | working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 34 consecutive silent fetches since creation) |
|
||||
| `Review/zhou2023_computer_vision_microfluidics.md` | **48-day** | 47 | stale carry-forward note (confirmed one-off at 2026-08-27 fetch, demoted at 2026-08-28 fetch) |
|
||||
| `celvivo_commercial/` | **43-day** | 44 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
|
||||
| `templates/` | **43-day** | 44 | stale carry-forward note (confirmed one-off alongside `Review/` at 2026-08-28 fetch) |
|
||||
| `deepread_40240593/` | **36-day** | 35 | working-folder pipeline hypothesis continuing to weaken (mtime unchanged across 35 consecutive silent fetches since creation) |
|
||||
|
||||
## Robin 8-07 added — untracked regional agent files (context only)
|
||||
|
||||
@@ -92,7 +94,9 @@ The 5 most recent vault commits are the new 2 (Tomas 2026 + Vijakumaran 2026) on
|
||||
|
||||
## Recent commits — wiki (last 8)
|
||||
|
||||
1. `6bafbff` 2026-09-28 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-28, **forty-fifth** consecutive sources-sync — the per `git show --stat 6bafbff` commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files)
|
||||
1. `2fccbf0` 2026-09-29 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-29, **forty-sixth** consecutive sources-sync — the per `git show --stat 2fccbf0` commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files)
|
||||
2. `92874d2` 2026-09-29 — chore: daily update 2026-09-29 (per `git show --stat 92874d2` the commit re-touched `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — the standard daily-update cycle)
|
||||
3. `6bafbff` 2026-09-28 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-28, **forty-fifth** consecutive sources-sync — the per `git show --stat 6bafbff` commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files)
|
||||
2. `53fd10c` 2026-09-28 — chore: daily update 2026-09-28 (per `git show --stat 53fd10c` the commit re-touched `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/nocodb.md` + `sources/openwiki-version-drift.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — the standard daily-update cycle; this commit cleared `sources/openwiki-version-drift.md` from the working-tree dirty list; new `home/index.md` + `home/ldw/index.md` + `home/ldw/replace_quickstart_prior.py` + `tmp/replace_quickstart_prior.py` files added)
|
||||
3. `057a35e` 2026-09-27 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-27, **forty-fourth** consecutive sources-sync — the per `git show --stat 057a35e` commit re-touched `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md` — the same 4 source-sync files)
|
||||
4. `3e52ff2` 2026-09-27 — chore: daily update 2026-09-27 (per `git show --stat 3e52ff2` the commit re-touched `.last-update.json` + `index.md` + `quickstart.md` + `sources/README.md` + `sources/git-repo.md` + `sources/hackernews.md` + `sources/index.md` + `sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/web-search.md` + `sources/wikijs.md` + `themes.md` + `themes/05-robin-research.md` + `themes/index.md` — the standard daily-update cycle; this commit cleared `themes.md` from the working-tree dirty list; new `tmp/check_themes.py` + `tmp/index.md` files added)
|
||||
@@ -120,6 +124,20 @@ The 5 most recent vault commits are the new 2 (Tomas 2026 + Vijakumaran 2026) on
|
||||
26. `73dae5e` 2026-09-16 — chore: daily update 2026-09-16 (per `git show --stat 73dae5e` the commit re-touched the same source-sync files)
|
||||
27. `f5465f9` 2026-09-15 — chore(sources): refresh NocoDB/SeaFile/Wiki.js/RAGFlow counts (sources-sync 2026-09-15, **thirty-second** consecutive sources-sync)
|
||||
|
||||
## Synthesis-policy — this run (2026-09-29T18:14Z)
|
||||
|
||||
- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **18th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **18 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-28T18:09Z fetch recorded 17 calendar days; +1 calendar day from 2026-09-28 → 2026-09-29). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 16 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-28T18:09Z → 2026-09-29T18:14Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md). The new 2 untracked vault files noted at the 2026-09-24T18:07Z fetch (`04-Literature/Deep-Reads/Brain/2026-08-06_Parfitt_GM_et_al_NatCommun_2024_DJ1_LOF_midbrain_organoid_PD.md` 15972 bytes + `04-Literature/Deep-Reads/MOCs/papamichail-2025-organoids-on-chip.md` 13143 bytes) continue to carry forward unchanged from the 2026-09-24T18:07Z fetch — both pre-date the 2026-09-24 fetch and have been in the vault working tree since 2026-08-06 / 2026-09-13 respectively without being promoted to commits.
|
||||
- **Wiki delta: automated maintenance only** (1 daily update + 1 sources-sync). The 2 new wiki commits in the 24-hour window are routine: `92874d2` daily update 2026-09-29 + `2fccbf0` sources-sync 2026-09-29 — the **forty-sixth** consecutive sources-sync (continuing the count-data wipe pattern that started at the 2026-08-15 `2507925` commit). The wiki HEAD bump `6bafbff` → `2fccbf0` covers 1 calendar day.
|
||||
- **Dirty-file baseline change**: 12-dirty baseline (at 2026-09-28T18:09Z) → **13-dirty baseline** (at 2026-09-29T18:14Z). The `92874d2` daily update committed `themes.md` (clearing it from the dirty list; the standard 16-file cycle per `git show --stat 92874d2` re-touched the same synthesis-layer files as the prior daily update including `themes.md` + `themes/05-robin-research.md` + `themes/index.md`); the daily update also removed `tmp/check_themes.py` from the working tree (deleted in commit; this is the new entry in the dirty list). The `2fccbf0` sources-sync re-touched the 4 source-sync files (`sources/nocodb.md` + `sources/ragflow.md` + `sources/seafile.md` + `sources/wikijs.md`); the post-sources-sync synthesis-side write path re-touched `index.md` + `quickstart.md` + `sources/README.md` + `sources/hackernews.md` + `sources/index.md` + `sources/literature.md` + `sources/web-search.md`; the CLI metadata cycle re-touched `.last-update.json`. The 13-dirty-file list at 2026-09-29T18:14Z: `M .last-update.json` + `M index.md` + `M quickstart.md` + `M sources/README.md` + `M sources/hackernews.md` + `M sources/index.md` + `M sources/literature.md` + `M sources/nocodb.md` + `M sources/ragflow.md` + `M sources/seafile.md` + `M sources/web-search.md` + `M sources/wikijs.md` + `D tmp/check_themes.py`. (Note: the standard `92874d2` daily update cycle cleared `themes.md` from the dirty list, but the `2fccbf0` sources-sync that landed after the daily update re-dirtied the 4 source-sync files plus 7 synthesis-side files re-touched by the post-commit write path + the `tmp/check_themes.py` deletion that the daily update committed = net +1 vs the 12-dirty baseline because the daily update cleared `themes.md` while the sources-sync + post-commit write path re-touched `sources/README.md` + `sources/literature.md` that the daily update had not re-touched and added the `tmp/check_themes.py` deletion.)
|
||||
- **Carry-forward bump** to **48/43/43/36-day** at this fetch (highest carry-forward durations of the 2026-08-07 streak, +1 day from the 2026-09-28 fetch's 47/42/42/35-day): `Review/zhou2023_computer_vision_microfluidics.md` 47 → **48-day** (46 → **47 fetches silent**), `celvivo_commercial/` + `templates/` 42 → **43-day** (43 → **44 fetches silent** each), `deepread_40240593/` 35 → **36-day** (34 → **35 consecutive silent fetches** since creation; mtime unchanged at 2026-08-24 16:31 +0800).
|
||||
- **Synthesis-layer impact**: **none** — vault delta is empty (no new commits, no new mtime changes) and the wiki delta is automated maintenance only. The MOC-file working-tree modification persists uncommitted for 16 calendar days; it does not affect synthesis-layer pages until the commit lands. No `/themes.md` row, no `/commitments.md` row, no `/open-questions.md` row, no `/personal-logistics.md` item is added at this fetch.
|
||||
- **`/quickstart.md`** gets a new "Latest update — git-repo-1 (2026-09-29T18:14Z)" paragraph + the description frontmatter mentions the 2026-09-29T18:14Z git-repo-1 fetch + the **45th git-repo-1 fetch** of the 2026-08-07 streak + the **vault-silent-for-18th-consecutive-fetch** event + the 2 new wiki commits (45th/46th sources-sync sequence: `92874d2` daily update + `2fccbf0` sources-sync forty-sixth) + the 48/43/43/36-day carry-forward bump + the 13-dirty-file baseline + the MOC-file working-tree modification persisting uncommitted for 16 calendar days + the Robin 8-07 added untracked regional agent files
|
||||
- **`/sources/git-repo.md`** (this page) — description frontmatter refreshed to mention the 2026-09-29T18:14Z fetch; tags refreshed to add `2026-09-29`, `vault-silent-18d-consecutive-fetch`, `forty-sixth-sources-sync-2026-09-29`, `forty-fifth-git-repo-fetch-45th`, `wiki-2-new-commits`, `moc-organoid-3d-culture-uncommitted-edit-16d`, `deepread-40240593-thirty-six-silent-fetches`, `dirty-13-files-baseline-2026-09-29`, `robin-8-07-added-untracked-regional-agent-files`; timestamp refreshed to `2026-09-29T18:14:00Z`; Source-config vault/wiki HEADs refreshed; Latest-manifest section refreshed; Carry-forward table bumped to 48/43/43/36-day; Recent-commits-wiki table refreshed (2 new commits at top); this Synthesis-policy section added; Previous-run section updated
|
||||
- **`/themes/05-robin-research.md`** — frontmatter description refreshed to mention the 2026-09-29T18:14Z fetch + the vault HEAD unchanged for the 18th consecutive fetch + the 2 new wiki commits (45th/46th sources-sync sequence) + the 48/43/43/36-day carry-forward bump + the MOC-file working-tree modification persisting uncommitted for 16 calendar days; 04-Literature/Deep-Reads/ breakdown table refreshed with the 48/43/43/36-day carry-forward bump
|
||||
- **`/sources/index.md`** — refreshed the git-repo.md description entry to reflect the 2026-09-29T18:14Z fetch + the vault HEAD unchanged at `09bec367` for the 18th consecutive fetch + the wiki HEAD `2fccbf0` + the 48/43/43/36-day carry-forward bump + the **45th git-repo-1 fetch** of the 2026-08-07 streak + the 13-dirty-file baseline
|
||||
- **`/sources/README.md`** — refreshed Active connectors Git repo row + Connector roll Git repo row to mention the 2026-09-29T18:14Z fetch + the **forty-sixth** consecutive sources-sync + the 13-dirty-file baseline + the 48/43/43/36-day carry-forward bump
|
||||
- Wiki edits: see the corresponding "Latest update — git-repo-1 (2026-09-29T18:14Z)" paragraph on `/quickstart.md` for the full delta list.
|
||||
|
||||
## Synthesis-policy — this run (2026-09-28T18:09Z)
|
||||
|
||||
- **Vault delta: 0 new vault commits + 1 working-tree modification persisting** — vault HEAD unchanged at `09bec367` for the **17th consecutive fetch** after the Tomas 2026 + Vijakumaran 2026 resumption on 2026-09-11T18:14Z. **17 calendar days of vault silence** since the 2026-09-11 resumption (the 2026-09-27T18:19Z fetch recorded 16 calendar days; +1 calendar day from 2026-09-27 → 2026-09-28). The same MOC-file modification that surfaced at the 2026-09-13T18:08Z fetch (`M "04-Literature/Deep-Reads/MOCs/MOC-类器官与3D培养.md"`, mtime 2026-09-13 11:55:42 +0800) **persists uncommitted for 15 calendar days** at this fetch — Robin is editing the MOC index file but the modification has not been promoted to a commit. No new vault mtime changes were observed in the 2026-09-27T18:19Z → 2026-09-28T18:09Z 24-hour window. The 8 untracked regional agent files from 2026-08-07 (per the source-specific instruction "Track vault + OpenWiki wiki mtime + commits (Robin 8-07 added)") continue to carry forward unchanged: `02-Clients/Agents/全国经销商地图-2026-0807.md` (1310 bytes) + `02-Clients/Agents/华东-2026-0807.md` (10030 bytes) + `02-Clients/Agents/华北-2026-0807.md` (13057 bytes) + `02-Clients/Agents/华南-2026-0807.md` (10744 bytes) + `02-Clients/Agents/山东-2026-0807.md` (8592 bytes) + `02-Clients/Agents/湖北-2026-0807.md` (5766 bytes) + `02-Clients/Agents/西北-2026-0807.md` (2287 bytes) + `02-Clients/Agents/西南-2026-0807.md` (2657 bytes) — all dated 2026-08-07 20:24:19 +0800, documented in [`/sources/distributors-china-2026.md`](/sources/distributors-china-2026.md). The new 2 untracked vault files noted at the 2026-09-24T18:07Z fetch (`04-Literature/Deep-Reads/Brain/2026-08-06_Parfitt_GM_et_al_NatCommun_2024_DJ1_LOF_midbrain_organoid_PD.md` 15972 bytes + `04-Literature/Deep-Reads/MOCs/papamichail-2025-organoids-on-chip.md` 13143 bytes) continue to carry forward unchanged from the 2026-09-24T18:07Z fetch — both pre-date the 2026-09-24 fetch and have been in the vault working tree since 2026-08-06 / 2026-09-13 respectively without being promoted to commits.
|
||||
@@ -330,7 +348,11 @@ The 5 most recent vault commits are the new 2 (Tomas 2026 + Vijakumaran 2026) on
|
||||
|
||||
## Previous run
|
||||
|
||||
- 2026-09-29T18:14Z — vault HEAD unchanged at `09bec367` for the 18th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 16 calendar days at this fetch), 2 new wiki commits (`92874d2` daily update 2026-09-29 + `2fccbf0` sources-sync 2026-09-29 — the **forty-sixth** consecutive sources-sync), 13-dirty-file baseline (vs the 12-dirty baseline at the 2026-09-28T18:09Z fetch — the `92874d2` daily update cleared `themes.md` from the dirty list while the `2fccbf0` sources-sync + post-commit write path re-touched `sources/README.md` + `sources/literature.md` + the `tmp/check_themes.py` deletion that the daily update committed remained in the dirty list; net: +1 vs the 12-dirty baseline), carry-forward bump to 48/43/43/36-day. See the "Synthesis-policy — this run (2026-09-29T18:14Z)" section above + the "Latest update — git-repo-1 (2026-09-29T18:14Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||||
|
||||
- 2026-09-26T18:09Z — vault HEAD unchanged at `09bec367` for the 15th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 13 calendar days at this fetch), 2 new wiki commits (`41347af` daily update 2026-09-26 + `4becee0` sources-sync 2026-09-26 — the **forty-third** consecutive sources-sync), 11-dirty-file baseline (down from 12-dirty at the 2026-09-25T18:17Z fetch — the `41347af` daily update cleared `sources/README.md` from the dirty list; net: −1 vs the 12-dirty baseline), carry-forward bump to 45/40/40/33-day. See the "Synthesis-policy — this run (2026-09-26T18:09Z)" section above + the "Latest update — git-repo-1 (2026-09-26T18:09Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||||
- 2026-09-27T18:19Z — vault HEAD unchanged at `09bec367` for the 16th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 14 calendar days at this fetch), 2 new wiki commits (`3e52ff2` daily update 2026-09-27 + `057a35e` sources-sync 2026-09-27 — the **forty-fourth** consecutive sources-sync), 12-dirty-file baseline (up from 11-dirty at the 2026-09-26T18:09Z fetch — the `057a35e` sources-sync re-touched the 4 source-sync files; net: +1 vs the 11-dirty baseline), carry-forward bump to 46/41/41/34-day. See the "Synthesis-policy — this run (2026-09-27T18:19Z)" section above + the "Latest update — git-repo-1 (2026-09-27T18:19Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||||
- 2026-09-28T18:09Z — vault HEAD unchanged at `09bec367` for the 17th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 15 calendar days at this fetch), 2 new wiki commits (`53fd10c` daily update 2026-09-28 + `6bafbff` sources-sync 2026-09-28 — the **forty-fifth** consecutive sources-sync), 12-dirty-file baseline (same count as the 2026-09-27T18:19Z fetch — the `53fd10c` daily update cleared `sources/openwiki-version-drift.md` from the dirty list while the `6bafbff` sources-sync + post-commit write path re-touched `themes.md`; net: 0 vs the 12-dirty baseline), carry-forward bump to 47/42/42/35-day. See the "Synthesis-policy — this run (2026-09-28T18:09Z)" section above + the "Latest update — git-repo-1 (2026-09-28T18:09Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||||
- 2026-09-25T18:17Z — vault HEAD unchanged at `09bec367` for the 14th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 12 calendar days at this fetch), 2 new wiki commits (`069eef3` daily update 2026-09-25 + `f9bb2e5` sources-sync 2026-09-25 — the **forty-second** consecutive sources-sync), 11-dirty-file baseline (down from 12-dirty at the 2026-09-24T18:07Z fetch — the `069eef3` daily update cleared `sources/git-repo.md` from the dirty list; net: −1 vs the 12-dirty baseline), carry-forward bump to 44/39/39/32-day. See the "Synthesis-policy — this run (2026-09-25T18:17Z)" section above + the "Latest update — git-repo-1 (2026-09-25T18:17Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||||
- 2026-09-24T18:07Z — vault HEAD unchanged at `09bec367` for the 13th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 11 calendar days at this fetch), 2 new wiki commits (`dc1a9fb` daily update 2026-09-24 + `17e9faf` sources-sync 2026-09-24 — the **forty-first** consecutive sources-sync), 12-dirty-file baseline (up from 10-dirty at the 2026-09-23T18:10Z fetch — the `17e9faf` sources-sync re-touched the 4 source-sync files; net: +2 vs the 10-dirty baseline), carry-forward bump to 43/38/38/31-day. See the "Synthesis-policy — this run (2026-09-24T18:07Z)" section above + the "Latest update — git-repo-1 (2026-09-24T18:07Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||||
- 2026-09-23T18:10Z — vault HEAD unchanged at `09bec367` for the 12th consecutive fetch after the Tomas 2026 + Vijakumaran 2026 resumption, 0 new vault commits + 1 working-tree modification at `MOCs/MOC-类器官与3D培养.md` (mtime 2026-09-13 11:55:42 +0800, persists uncommitted for 10 calendar days at this fetch), 2 new wiki commits (`4c145e2` daily update 2026-09-23 + `6aa1db2` sources-sync 2026-09-23 — the **fortieth** consecutive sources-sync), 10-dirty-file baseline (up from 8-dirty at the 2026-09-22T18:08Z fetch — the `6aa1db2` sources-sync re-touched the 4 source-sync files; net: +2 vs the 8-dirty baseline), carry-forward bump to 42/37/37/30-day. See the "Synthesis-policy — this run (2026-09-23T18:10Z)" section above + the "Latest update — git-repo-1 (2026-09-23T18:10Z)" paragraph on `/quickstart.md` for the full synthesis of that run.
|
||||
|
||||
Reference in new issue
Block a user